Multiple sequence alignment - TraesCS5D01G176100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G176100 chr5D 100.000 9955 0 0 1 9955 276284542 276294496 0.000000e+00 18384.0
1 TraesCS5D01G176100 chr5D 97.393 537 9 3 9421 9955 25043871 25044404 0.000000e+00 909.0
2 TraesCS5D01G176100 chr5D 85.774 239 31 3 6945 7181 543848191 543848428 5.970000e-62 250.0
3 TraesCS5D01G176100 chr5D 98.913 92 0 1 7890 7980 496216255 496216346 8.000000e-36 163.0
4 TraesCS5D01G176100 chr5B 97.756 4768 84 6 3138 7893 313139269 313144025 0.000000e+00 8191.0
5 TraesCS5D01G176100 chr5B 92.051 2365 106 26 602 2924 313136230 313138554 0.000000e+00 3251.0
6 TraesCS5D01G176100 chr5B 89.541 1090 69 18 8271 9321 313144365 313145448 0.000000e+00 1339.0
7 TraesCS5D01G176100 chr5B 93.627 659 31 4 1 651 313119451 313120106 0.000000e+00 974.0
8 TraesCS5D01G176100 chr5B 98.404 376 3 2 9583 9955 459577465 459577090 0.000000e+00 658.0
9 TraesCS5D01G176100 chr5B 97.872 282 6 0 7976 8257 313144024 313144305 1.160000e-133 488.0
10 TraesCS5D01G176100 chr5B 91.515 330 26 2 9626 9953 399433567 399433896 4.240000e-123 453.0
11 TraesCS5D01G176100 chr5B 98.305 236 3 1 2921 3155 313138676 313138911 7.200000e-111 412.0
12 TraesCS5D01G176100 chr5B 93.168 161 9 2 9422 9580 459580242 459580082 1.670000e-57 235.0
13 TraesCS5D01G176100 chr5B 94.444 54 2 1 647 700 313136224 313136276 2.300000e-11 82.4
14 TraesCS5D01G176100 chr5B 91.837 49 4 0 4994 5042 37609390 37609342 1.790000e-07 69.4
15 TraesCS5D01G176100 chr5A 93.805 3858 153 38 364 4170 364673708 364677530 0.000000e+00 5722.0
16 TraesCS5D01G176100 chr5A 96.506 1803 55 7 6094 7893 364679145 364680942 0.000000e+00 2974.0
17 TraesCS5D01G176100 chr5A 94.427 933 33 7 5193 6120 364677904 364678822 0.000000e+00 1417.0
18 TraesCS5D01G176100 chr5A 90.616 714 37 8 7976 8683 364680941 364681630 0.000000e+00 920.0
19 TraesCS5D01G176100 chr5A 89.481 675 37 7 8681 9342 364681845 364682498 0.000000e+00 822.0
20 TraesCS5D01G176100 chr5A 85.887 248 29 5 6950 7194 640617342 640617098 9.920000e-65 259.0
21 TraesCS5D01G176100 chr1D 98.876 534 6 0 9422 9955 436340144 436339611 0.000000e+00 953.0
22 TraesCS5D01G176100 chr1D 87.805 246 27 2 6945 7188 383758021 383758265 1.640000e-72 285.0
23 TraesCS5D01G176100 chr1D 78.767 146 24 5 5027 5170 487609719 487609859 3.830000e-14 91.6
24 TraesCS5D01G176100 chr3D 97.015 536 9 4 9422 9955 31699537 31699007 0.000000e+00 894.0
25 TraesCS5D01G176100 chr4D 97.451 510 12 1 9445 9954 492816886 492817394 0.000000e+00 869.0
26 TraesCS5D01G176100 chr4D 89.320 103 11 0 4522 4624 11000006 10999904 8.110000e-26 130.0
27 TraesCS5D01G176100 chrUn 97.600 375 7 1 9583 9955 88078385 88078011 8.430000e-180 641.0
28 TraesCS5D01G176100 chrUn 90.643 171 11 4 9410 9580 88081229 88081064 1.300000e-53 222.0
29 TraesCS5D01G176100 chr2A 96.379 359 9 3 9599 9955 772850724 772851080 1.110000e-163 588.0
30 TraesCS5D01G176100 chr2A 93.125 160 9 2 9422 9580 772850230 772850388 6.010000e-57 233.0
31 TraesCS5D01G176100 chr2A 87.121 132 14 2 4351 4479 102683042 102682911 8.060000e-31 147.0
32 TraesCS5D01G176100 chr2A 86.719 128 16 1 5062 5188 697096204 697096077 3.750000e-29 141.0
33 TraesCS5D01G176100 chr2A 82.927 123 19 2 5063 5184 174230389 174230510 1.060000e-19 110.0
34 TraesCS5D01G176100 chr2A 81.967 122 21 1 5064 5184 174030251 174030372 1.770000e-17 102.0
35 TraesCS5D01G176100 chr4B 94.154 325 14 4 9632 9954 285409040 285408719 3.230000e-134 490.0
36 TraesCS5D01G176100 chr4B 100.000 31 0 0 9602 9632 285409438 285409408 3.880000e-04 58.4
37 TraesCS5D01G176100 chr7D 86.166 253 24 8 6945 7193 46020886 46020641 7.670000e-66 263.0
38 TraesCS5D01G176100 chr7D 87.288 118 13 2 5066 5182 585662967 585663083 6.270000e-27 134.0
39 TraesCS5D01G176100 chr1B 85.433 254 33 3 6939 7189 123953314 123953566 2.760000e-65 261.0
40 TraesCS5D01G176100 chr1B 93.038 158 10 1 9422 9578 559137304 559137147 7.780000e-56 230.0
41 TraesCS5D01G176100 chr1B 93.038 158 10 1 9422 9578 559151152 559150995 7.780000e-56 230.0
42 TraesCS5D01G176100 chr1B 98.913 92 1 0 7889 7980 133188853 133188944 2.220000e-36 165.0
43 TraesCS5D01G176100 chr1B 100.000 86 0 0 7892 7977 429603126 429603041 1.030000e-34 159.0
44 TraesCS5D01G176100 chr1B 93.069 101 7 0 7883 7983 539573353 539573253 2.240000e-31 148.0
45 TraesCS5D01G176100 chr4A 87.783 221 25 2 6939 7158 674359846 674359627 3.570000e-64 257.0
46 TraesCS5D01G176100 chr4A 79.762 168 23 7 5023 5187 576565608 576565449 2.940000e-20 111.0
47 TraesCS5D01G176100 chr6B 85.306 245 35 1 6945 7189 717561762 717562005 1.660000e-62 252.0
48 TraesCS5D01G176100 chr3A 89.130 138 11 4 5058 5192 581620359 581620495 1.720000e-37 169.0
49 TraesCS5D01G176100 chr6D 100.000 87 0 0 7891 7977 68334472 68334386 2.880000e-35 161.0
50 TraesCS5D01G176100 chr6D 98.864 88 1 0 7890 7977 400063759 400063672 3.720000e-34 158.0
51 TraesCS5D01G176100 chr7B 100.000 86 0 0 7892 7977 433174862 433174777 1.030000e-34 159.0
52 TraesCS5D01G176100 chr7B 86.842 114 13 2 5066 5178 656276005 656276117 1.050000e-24 126.0
53 TraesCS5D01G176100 chr7A 95.050 101 4 1 7890 7990 608993357 608993258 3.720000e-34 158.0
54 TraesCS5D01G176100 chr2B 97.778 90 2 0 7888 7977 799148682 799148771 1.340000e-33 156.0
55 TraesCS5D01G176100 chr2B 87.879 132 13 1 4351 4479 154934614 154934483 1.730000e-32 152.0
56 TraesCS5D01G176100 chr2D 87.879 132 13 1 4351 4479 106268862 106268731 1.730000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G176100 chr5D 276284542 276294496 9954 False 18384.0 18384 100.000000 1 9955 1 chr5D.!!$F2 9954
1 TraesCS5D01G176100 chr5D 25043871 25044404 533 False 909.0 909 97.393000 9421 9955 1 chr5D.!!$F1 534
2 TraesCS5D01G176100 chr5B 313136224 313145448 9224 False 2293.9 8191 94.994833 602 9321 6 chr5B.!!$F3 8719
3 TraesCS5D01G176100 chr5B 313119451 313120106 655 False 974.0 974 93.627000 1 651 1 chr5B.!!$F1 650
4 TraesCS5D01G176100 chr5B 459577090 459580242 3152 True 446.5 658 95.786000 9422 9955 2 chr5B.!!$R2 533
5 TraesCS5D01G176100 chr5A 364673708 364682498 8790 False 2371.0 5722 92.967000 364 9342 5 chr5A.!!$F1 8978
6 TraesCS5D01G176100 chr1D 436339611 436340144 533 True 953.0 953 98.876000 9422 9955 1 chr1D.!!$R1 533
7 TraesCS5D01G176100 chr3D 31699007 31699537 530 True 894.0 894 97.015000 9422 9955 1 chr3D.!!$R1 533
8 TraesCS5D01G176100 chr4D 492816886 492817394 508 False 869.0 869 97.451000 9445 9954 1 chr4D.!!$F1 509
9 TraesCS5D01G176100 chrUn 88078011 88081229 3218 True 431.5 641 94.121500 9410 9955 2 chrUn.!!$R1 545
10 TraesCS5D01G176100 chr2A 772850230 772851080 850 False 410.5 588 94.752000 9422 9955 2 chr2A.!!$F3 533
11 TraesCS5D01G176100 chr4B 285408719 285409438 719 True 274.2 490 97.077000 9602 9954 2 chr4B.!!$R1 352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 550 0.749649 TGCCGGTTCAGTGCAATTTT 59.250 45.000 1.90 0.0 30.85 1.82 F
1232 1258 0.469917 TCAGATCTCCCCAATTCGCC 59.530 55.000 0.00 0.0 0.00 5.54 F
2215 2266 0.107703 TAGGAGGTTGGCAAGATGCG 60.108 55.000 0.00 0.0 46.21 4.73 F
2766 2845 0.536006 GACAGGCCTGCAGTTTCAGT 60.536 55.000 33.06 9.8 32.32 3.41 F
2806 2885 0.596577 TGCATAGGTATCTCGTCGCC 59.403 55.000 0.00 0.0 0.00 5.54 F
4689 5660 0.038744 CCTGGATCAACACCTGCCTT 59.961 55.000 0.00 0.0 0.00 4.35 F
4981 5952 0.322187 ATAGTTGGAACCCCACGTGC 60.322 55.000 10.91 0.0 43.41 5.34 F
5153 6124 2.367947 AGGGAGAAGGTTTGAGGGAT 57.632 50.000 0.00 0.0 0.00 3.85 F
6653 7976 1.377202 CCGTCCATTGTCTGGTGGG 60.377 63.158 0.00 0.0 46.08 4.61 F
7905 9230 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2215 2266 0.244721 GGGCATGAAGAAAGCACACC 59.755 55.000 0.00 0.00 0.00 4.16 R
3080 3293 1.204941 CTAGTACGGAAAGGCAGCTGT 59.795 52.381 16.64 0.00 0.00 4.40 R
4194 5155 0.107654 GCGGAGTTGTGGGAGCTAAT 60.108 55.000 0.00 0.00 0.00 1.73 R
4639 5610 1.226888 CCACCGTCGCTAGCTAACC 60.227 63.158 13.93 0.00 0.00 2.85 R
4798 5769 1.923204 CCTCTCAATCTTCAGAACGCG 59.077 52.381 3.53 3.53 0.00 6.01 R
5637 6610 0.036388 AGAATACCACACGCCCACTG 60.036 55.000 0.00 0.00 0.00 3.66 R
6379 7702 1.604604 TAAACTTGTCACAGCCTGGC 58.395 50.000 11.65 11.65 0.00 4.85 R
7014 8338 0.250513 AACTTGCCATCCTCGGAGAC 59.749 55.000 6.58 0.00 0.00 3.36 R
8521 9909 0.659427 CATGCCATACCAGCAACTCG 59.341 55.000 0.00 0.00 44.83 4.18 R
9378 11019 0.383231 CGGATGATTTCAGCAAGGGC 59.617 55.000 0.00 0.00 41.61 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 180 1.527433 GGTTTTGCACCAGAGGAGGC 61.527 60.000 0.00 0.00 46.42 4.70
218 227 4.067896 GTTGAAGGAGATTCTGTTGCTCA 58.932 43.478 0.00 0.00 38.83 4.26
221 230 1.066573 AGGAGATTCTGTTGCTCACGG 60.067 52.381 0.00 0.00 0.00 4.94
227 236 1.069765 CTGTTGCTCACGGAGGTGT 59.930 57.895 3.56 0.00 44.68 4.16
233 242 4.357947 TCACGGAGGTGTCGCTGC 62.358 66.667 0.00 0.00 44.68 5.25
263 272 6.037098 GGAGTATTATTGCTATGTAGAGGCG 58.963 44.000 0.00 0.00 0.00 5.52
284 293 2.037772 GAGGCAGAGGAAGAGTTGTTGA 59.962 50.000 0.00 0.00 0.00 3.18
344 353 2.423892 TCGAAGAGGATTGAAGAGGTCG 59.576 50.000 0.00 0.00 0.00 4.79
346 355 0.827368 AGAGGATTGAAGAGGTCGGC 59.173 55.000 0.00 0.00 0.00 5.54
479 488 4.757149 AGTGACTAATGTGGTCTTCAAAGC 59.243 41.667 0.00 0.00 35.04 3.51
492 501 5.123979 GGTCTTCAAAGCCTGGTATAACAAG 59.876 44.000 0.00 0.00 0.00 3.16
494 503 4.919774 TCAAAGCCTGGTATAACAAGGA 57.080 40.909 4.59 0.00 0.00 3.36
496 505 2.981859 AGCCTGGTATAACAAGGACG 57.018 50.000 4.59 0.00 0.00 4.79
499 508 3.008704 AGCCTGGTATAACAAGGACGTTT 59.991 43.478 4.59 0.00 0.00 3.60
540 550 0.749649 TGCCGGTTCAGTGCAATTTT 59.250 45.000 1.90 0.00 30.85 1.82
603 613 7.384439 TGACCAGCATAATTTTCGATGTAAA 57.616 32.000 0.00 0.00 0.00 2.01
606 616 9.301153 GACCAGCATAATTTTCGATGTAAATTT 57.699 29.630 10.62 0.00 36.75 1.82
1232 1258 0.469917 TCAGATCTCCCCAATTCGCC 59.530 55.000 0.00 0.00 0.00 5.54
1285 1312 3.735514 GCGAGTAGAGCTTCGATCCTTTT 60.736 47.826 9.64 0.00 0.00 2.27
1296 1323 1.649171 CGATCCTTTTGTCGTCGTCTG 59.351 52.381 0.00 0.00 33.42 3.51
1340 1367 5.205565 GTTGTCACCGAGTTTTCAATCTTC 58.794 41.667 0.00 0.00 0.00 2.87
1347 1374 4.065088 CGAGTTTTCAATCTTCTGGGACA 58.935 43.478 0.00 0.00 0.00 4.02
1387 1415 7.708051 TGTCTAAATTTCTCATCCTAGAGACG 58.292 38.462 0.00 0.00 43.91 4.18
1436 1464 3.530265 TGCTTACTAACGGTATGTGGG 57.470 47.619 0.00 0.00 0.00 4.61
1440 1468 0.971959 ACTAACGGTATGTGGGCGGA 60.972 55.000 0.00 0.00 0.00 5.54
1449 1477 3.066203 GGTATGTGGGCGGAATAAACAAG 59.934 47.826 0.00 0.00 0.00 3.16
1454 1482 2.014857 GGGCGGAATAAACAAGAGGTC 58.985 52.381 0.00 0.00 0.00 3.85
1511 1539 4.363999 TCGGTTTGCCAACAGTAATTTTG 58.636 39.130 2.78 0.00 34.15 2.44
1512 1540 4.116238 CGGTTTGCCAACAGTAATTTTGT 58.884 39.130 2.78 0.00 34.15 2.83
1513 1541 5.067413 TCGGTTTGCCAACAGTAATTTTGTA 59.933 36.000 2.78 0.00 34.15 2.41
1514 1542 5.174216 CGGTTTGCCAACAGTAATTTTGTAC 59.826 40.000 2.78 0.00 34.15 2.90
1515 1543 5.174216 GGTTTGCCAACAGTAATTTTGTACG 59.826 40.000 2.78 0.00 34.15 3.67
1516 1544 5.502153 TTGCCAACAGTAATTTTGTACGT 57.498 34.783 0.00 0.00 0.00 3.57
1585 1614 3.611766 AGTATCAGTACTGTTGCACCC 57.388 47.619 21.99 5.31 39.66 4.61
1594 1623 3.386932 ACTGTTGCACCCCATGATATT 57.613 42.857 0.00 0.00 0.00 1.28
1595 1624 3.711863 ACTGTTGCACCCCATGATATTT 58.288 40.909 0.00 0.00 0.00 1.40
1649 1694 4.282195 ACTCCATTACTATCAGCTGCCTAC 59.718 45.833 9.47 0.00 0.00 3.18
1652 1697 4.562347 CCATTACTATCAGCTGCCTACTGG 60.562 50.000 9.47 6.05 35.78 4.00
1673 1718 8.557592 ACTGGTGCATGATTATAGTGATTATG 57.442 34.615 0.00 0.00 0.00 1.90
1725 1770 3.885484 AGTCTGCAGTTTCATTTCACG 57.115 42.857 14.67 0.00 0.00 4.35
1728 1773 2.046313 CTGCAGTTTCATTTCACGTGC 58.954 47.619 11.67 0.00 0.00 5.34
1739 1784 0.950836 TTCACGTGCCTTGTTCCATG 59.049 50.000 11.67 0.00 0.00 3.66
1783 1828 2.697229 TGCACATGAATTTGGGTTGTGA 59.303 40.909 0.00 0.00 39.98 3.58
1789 1834 5.481122 ACATGAATTTGGGTTGTGATCATGA 59.519 36.000 16.96 0.00 43.18 3.07
1926 1972 3.380479 TCTTCACCTTCCTTGTACGTG 57.620 47.619 0.00 0.00 0.00 4.49
2058 2105 3.401182 TCCTTGCATTGTTGATTTTGCC 58.599 40.909 0.00 0.00 34.20 4.52
2067 2115 9.006839 TGCATTGTTGATTTTGCCAATTATTTA 57.993 25.926 0.00 0.00 34.20 1.40
2110 2161 2.279582 AGTACAACCTCGAGCAATCG 57.720 50.000 6.99 0.00 0.00 3.34
2163 2214 7.919091 CCATGATCAATTTTCATGTTCTGTAGG 59.081 37.037 19.49 5.51 45.83 3.18
2164 2215 6.855836 TGATCAATTTTCATGTTCTGTAGGC 58.144 36.000 0.00 0.00 0.00 3.93
2165 2216 6.660521 TGATCAATTTTCATGTTCTGTAGGCT 59.339 34.615 0.00 0.00 0.00 4.58
2166 2217 6.899393 TCAATTTTCATGTTCTGTAGGCTT 57.101 33.333 0.00 0.00 0.00 4.35
2167 2218 7.994425 TCAATTTTCATGTTCTGTAGGCTTA 57.006 32.000 0.00 0.00 0.00 3.09
2168 2219 8.044060 TCAATTTTCATGTTCTGTAGGCTTAG 57.956 34.615 0.00 0.00 0.00 2.18
2169 2220 7.665559 TCAATTTTCATGTTCTGTAGGCTTAGT 59.334 33.333 0.00 0.00 0.00 2.24
2170 2221 8.299570 CAATTTTCATGTTCTGTAGGCTTAGTT 58.700 33.333 0.00 0.00 0.00 2.24
2171 2222 7.817418 TTTTCATGTTCTGTAGGCTTAGTTT 57.183 32.000 0.00 0.00 0.00 2.66
2172 2223 7.817418 TTTCATGTTCTGTAGGCTTAGTTTT 57.183 32.000 0.00 0.00 0.00 2.43
2173 2224 7.817418 TTCATGTTCTGTAGGCTTAGTTTTT 57.183 32.000 0.00 0.00 0.00 1.94
2174 2225 7.202016 TCATGTTCTGTAGGCTTAGTTTTTG 57.798 36.000 0.00 0.00 0.00 2.44
2175 2226 6.770785 TCATGTTCTGTAGGCTTAGTTTTTGT 59.229 34.615 0.00 0.00 0.00 2.83
2176 2227 7.284489 TCATGTTCTGTAGGCTTAGTTTTTGTT 59.716 33.333 0.00 0.00 0.00 2.83
2177 2228 6.791303 TGTTCTGTAGGCTTAGTTTTTGTTG 58.209 36.000 0.00 0.00 0.00 3.33
2183 2234 6.809196 TGTAGGCTTAGTTTTTGTTGTTGTTG 59.191 34.615 0.00 0.00 0.00 3.33
2195 2246 6.512177 TTGTTGTTGTTGTTGTTGTTGTAC 57.488 33.333 0.00 0.00 0.00 2.90
2215 2266 0.107703 TAGGAGGTTGGCAAGATGCG 60.108 55.000 0.00 0.00 46.21 4.73
2222 2273 3.058160 GGCAAGATGCGGTGTGCT 61.058 61.111 0.00 0.00 46.21 4.40
2235 2286 1.251251 GTGTGCTTTCTTCATGCCCT 58.749 50.000 0.00 0.00 0.00 5.19
2236 2287 1.615392 GTGTGCTTTCTTCATGCCCTT 59.385 47.619 0.00 0.00 0.00 3.95
2237 2288 1.614903 TGTGCTTTCTTCATGCCCTTG 59.385 47.619 0.00 0.00 0.00 3.61
2238 2289 1.615392 GTGCTTTCTTCATGCCCTTGT 59.385 47.619 0.00 0.00 0.00 3.16
2239 2290 2.036346 GTGCTTTCTTCATGCCCTTGTT 59.964 45.455 0.00 0.00 0.00 2.83
2240 2291 2.699846 TGCTTTCTTCATGCCCTTGTTT 59.300 40.909 0.00 0.00 0.00 2.83
2241 2292 3.062042 GCTTTCTTCATGCCCTTGTTTG 58.938 45.455 0.00 0.00 0.00 2.93
2242 2293 3.656559 CTTTCTTCATGCCCTTGTTTGG 58.343 45.455 0.00 0.00 0.00 3.28
2243 2294 2.380064 TCTTCATGCCCTTGTTTGGT 57.620 45.000 0.00 0.00 0.00 3.67
2244 2295 2.676748 TCTTCATGCCCTTGTTTGGTT 58.323 42.857 0.00 0.00 0.00 3.67
2245 2296 3.037549 TCTTCATGCCCTTGTTTGGTTT 58.962 40.909 0.00 0.00 0.00 3.27
2246 2297 3.454082 TCTTCATGCCCTTGTTTGGTTTT 59.546 39.130 0.00 0.00 0.00 2.43
2247 2298 3.191078 TCATGCCCTTGTTTGGTTTTG 57.809 42.857 0.00 0.00 0.00 2.44
2248 2299 2.503356 TCATGCCCTTGTTTGGTTTTGT 59.497 40.909 0.00 0.00 0.00 2.83
2249 2300 3.706594 TCATGCCCTTGTTTGGTTTTGTA 59.293 39.130 0.00 0.00 0.00 2.41
2388 2454 9.383519 GAGTCTAATGATGTGTTTCCTGAATTA 57.616 33.333 0.00 0.00 0.00 1.40
2665 2736 5.641209 GTGCTCACATCTTTAACTGTCAGAT 59.359 40.000 6.91 0.00 0.00 2.90
2704 2775 9.069078 CATTTTCATGTAACATTCTGTTGCTAG 57.931 33.333 9.04 0.00 42.31 3.42
2709 2780 5.534407 TGTAACATTCTGTTGCTAGTTCGA 58.466 37.500 9.04 0.00 42.31 3.71
2723 2802 3.963428 AGTTCGAGTAGCAGTTCCAAT 57.037 42.857 0.00 0.00 0.00 3.16
2766 2845 0.536006 GACAGGCCTGCAGTTTCAGT 60.536 55.000 33.06 9.80 32.32 3.41
2800 2879 6.925610 TTGATGTTGTTGCATAGGTATCTC 57.074 37.500 0.00 0.00 0.00 2.75
2805 2884 2.052157 GTTGCATAGGTATCTCGTCGC 58.948 52.381 0.00 0.00 0.00 5.19
2806 2885 0.596577 TGCATAGGTATCTCGTCGCC 59.403 55.000 0.00 0.00 0.00 5.54
2893 2978 3.275617 TGCAACAACCAGACTTACAGT 57.724 42.857 0.00 0.00 0.00 3.55
3043 3255 6.183360 GCTCTCTAACTTGAAATACGGCAATT 60.183 38.462 0.00 0.00 0.00 2.32
3276 3864 6.906157 ATTGTTAGGATATGGGATTTGCAG 57.094 37.500 0.00 0.00 0.00 4.41
3879 4470 8.984764 GCCAACAACGTGTATTATAGATCATTA 58.015 33.333 0.00 0.00 0.00 1.90
3926 4517 3.607422 TTCTGCAGAACAATGAACGTG 57.393 42.857 25.16 0.00 0.00 4.49
3968 4559 1.230324 GCAGTCTGTCCCTTTGTGAC 58.770 55.000 0.93 0.00 0.00 3.67
4131 4722 9.020731 ACACCAAGGATTTTTGTAGTATTTAGG 57.979 33.333 0.00 0.00 0.00 2.69
4194 5155 2.057137 AAACTGCTTGCTCAAGTGGA 57.943 45.000 10.86 0.00 40.45 4.02
4211 5172 1.559682 TGGATTAGCTCCCACAACTCC 59.440 52.381 0.00 0.00 44.23 3.85
4322 5293 2.201771 GGTATCTCCCCGGCTCCT 59.798 66.667 0.00 0.00 0.00 3.69
4341 5312 1.299926 GCTGACTGTCGTTGACCGT 60.300 57.895 2.98 0.00 37.94 4.83
4397 5368 1.954362 CTCCACGCTCCTCCTCTTGG 61.954 65.000 0.00 0.00 0.00 3.61
4399 5370 3.394836 ACGCTCCTCCTCTTGGCC 61.395 66.667 0.00 0.00 0.00 5.36
4537 5508 3.002583 TGCCGTCTGGATGCCTGA 61.003 61.111 0.00 0.00 37.49 3.86
4689 5660 0.038744 CCTGGATCAACACCTGCCTT 59.961 55.000 0.00 0.00 0.00 4.35
4786 5757 3.932710 GTGTGCGTTGATTGAGAGGATAA 59.067 43.478 0.00 0.00 0.00 1.75
4798 5769 1.840635 AGAGGATAACAGAGGGGCAAC 59.159 52.381 0.00 0.00 0.00 4.17
4933 5904 7.331440 TGTTTTTATTGTTGCTATCCAATGCAG 59.669 33.333 0.00 0.00 40.46 4.41
4981 5952 0.322187 ATAGTTGGAACCCCACGTGC 60.322 55.000 10.91 0.00 43.41 5.34
5029 6000 6.995686 TGTGTGAGTGTATATTGAAGGTGTTT 59.004 34.615 0.00 0.00 0.00 2.83
5067 6038 5.321927 ACCAAATATCGGCTTTATTAGGGG 58.678 41.667 0.00 0.00 0.00 4.79
5101 6072 3.065095 GGCATCTGCTAGCTGAGAAAAAG 59.935 47.826 25.68 8.98 41.70 2.27
5113 6084 6.547402 AGCTGAGAAAAAGTTTAATCCCTCT 58.453 36.000 0.00 0.00 0.00 3.69
5153 6124 2.367947 AGGGAGAAGGTTTGAGGGAT 57.632 50.000 0.00 0.00 0.00 3.85
5154 6125 2.648838 AGGGAGAAGGTTTGAGGGATT 58.351 47.619 0.00 0.00 0.00 3.01
5170 6141 5.908831 TGAGGGATTAAGTTTAGGGCATCTA 59.091 40.000 0.00 0.00 0.00 1.98
5339 6310 6.222038 ACTCTTGAATCGACTAATGCCTTA 57.778 37.500 0.00 0.00 0.00 2.69
5806 6779 6.957631 TGATGTTCTCTGGTGGTTTGTATAT 58.042 36.000 0.00 0.00 0.00 0.86
6035 7010 8.649841 CAATGTTGCTGGTCAAATTTAATACTG 58.350 33.333 0.00 0.00 36.26 2.74
6265 7588 6.645003 GTCCCTGTTTGTGAAATTTGATAACC 59.355 38.462 0.00 0.00 0.00 2.85
6653 7976 1.377202 CCGTCCATTGTCTGGTGGG 60.377 63.158 0.00 0.00 46.08 4.61
6984 8308 5.078949 TGATGTCAGATTTTTGACCATGGT 58.921 37.500 19.89 19.89 45.40 3.55
7014 8338 7.324856 TCGAACGTTTTTCATGACAAATTATGG 59.675 33.333 10.08 1.97 0.00 2.74
7171 8496 3.429492 TGCCATGCCTAAAAATCTGACA 58.571 40.909 0.00 0.00 0.00 3.58
7547 8872 1.134670 AGCAATACGCAGTCTTCCCTC 60.135 52.381 0.00 0.00 43.93 4.30
7733 9058 4.158394 GGATTAGCTTCAGCATTTGGTTCA 59.842 41.667 0.75 0.00 45.16 3.18
7893 9218 9.919348 TCGACTTAAAAATGTAAACACAACTAC 57.081 29.630 0.00 0.00 0.00 2.73
7894 9219 9.925268 CGACTTAAAAATGTAAACACAACTACT 57.075 29.630 0.00 0.00 0.00 2.57
7897 9222 9.673454 CTTAAAAATGTAAACACAACTACTCCC 57.327 33.333 0.00 0.00 0.00 4.30
7898 9223 7.891498 AAAAATGTAAACACAACTACTCCCT 57.109 32.000 0.00 0.00 0.00 4.20
7899 9224 7.506328 AAAATGTAAACACAACTACTCCCTC 57.494 36.000 0.00 0.00 0.00 4.30
7900 9225 4.612264 TGTAAACACAACTACTCCCTCC 57.388 45.455 0.00 0.00 0.00 4.30
7901 9226 2.833631 AAACACAACTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
7902 9227 1.713297 AACACAACTACTCCCTCCGT 58.287 50.000 0.00 0.00 0.00 4.69
7903 9228 1.713297 ACACAACTACTCCCTCCGTT 58.287 50.000 0.00 0.00 0.00 4.44
7904 9229 1.617357 ACACAACTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95
7905 9230 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62
7906 9231 1.263356 CAACTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
7907 9232 1.831736 CAACTACTCCCTCCGTTCCAT 59.168 52.381 0.00 0.00 0.00 3.41
7908 9233 3.028850 CAACTACTCCCTCCGTTCCATA 58.971 50.000 0.00 0.00 0.00 2.74
7909 9234 3.614568 ACTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
7910 9235 3.924922 ACTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
7911 9236 5.070823 ACTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
7912 9237 4.831710 ACTACTCCCTCCGTTCCATATTAC 59.168 45.833 0.00 0.00 0.00 1.89
7913 9238 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
7914 9239 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
7915 9240 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
7916 9241 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
7917 9242 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
7918 9243 3.552541 CTCCGTTCCATATTACTCGTCG 58.447 50.000 0.00 0.00 0.00 5.12
7919 9244 2.049228 CCGTTCCATATTACTCGTCGC 58.951 52.381 0.00 0.00 0.00 5.19
7920 9245 2.287427 CCGTTCCATATTACTCGTCGCT 60.287 50.000 0.00 0.00 0.00 4.93
7921 9246 2.719556 CGTTCCATATTACTCGTCGCTG 59.280 50.000 0.00 0.00 0.00 5.18
7922 9247 3.547413 CGTTCCATATTACTCGTCGCTGA 60.547 47.826 0.00 0.00 0.00 4.26
7923 9248 4.547532 GTTCCATATTACTCGTCGCTGAT 58.452 43.478 0.00 0.00 0.00 2.90
7924 9249 4.848562 TCCATATTACTCGTCGCTGATT 57.151 40.909 0.00 0.00 0.00 2.57
7925 9250 5.196341 TCCATATTACTCGTCGCTGATTT 57.804 39.130 0.00 0.00 0.00 2.17
7926 9251 6.321848 TCCATATTACTCGTCGCTGATTTA 57.678 37.500 0.00 0.00 0.00 1.40
7927 9252 6.379386 TCCATATTACTCGTCGCTGATTTAG 58.621 40.000 0.00 0.00 0.00 1.85
7928 9253 6.016527 TCCATATTACTCGTCGCTGATTTAGT 60.017 38.462 0.00 0.00 0.00 2.24
7929 9254 7.173735 TCCATATTACTCGTCGCTGATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
7930 9255 7.270793 CCATATTACTCGTCGCTGATTTAGTAC 59.729 40.741 0.00 0.00 0.00 2.73
7931 9256 5.550232 TTACTCGTCGCTGATTTAGTACA 57.450 39.130 0.00 0.00 0.00 2.90
7932 9257 4.430137 ACTCGTCGCTGATTTAGTACAA 57.570 40.909 0.00 0.00 0.00 2.41
7933 9258 4.801891 ACTCGTCGCTGATTTAGTACAAA 58.198 39.130 0.00 0.00 0.00 2.83
7934 9259 4.857588 ACTCGTCGCTGATTTAGTACAAAG 59.142 41.667 0.00 0.00 0.00 2.77
7935 9260 4.801891 TCGTCGCTGATTTAGTACAAAGT 58.198 39.130 0.00 0.00 0.00 2.66
7936 9261 5.224888 TCGTCGCTGATTTAGTACAAAGTT 58.775 37.500 0.00 0.00 0.00 2.66
7937 9262 5.118050 TCGTCGCTGATTTAGTACAAAGTTG 59.882 40.000 0.00 0.00 0.00 3.16
7938 9263 5.107607 CGTCGCTGATTTAGTACAAAGTTGT 60.108 40.000 1.75 1.75 44.86 3.32
7939 9264 6.088483 CGTCGCTGATTTAGTACAAAGTTGTA 59.912 38.462 0.00 0.00 42.35 2.41
7952 9277 6.224420 ACAAAGTTGTACTAAATCAGCGAC 57.776 37.500 0.00 0.00 40.16 5.19
7953 9278 5.107607 ACAAAGTTGTACTAAATCAGCGACG 60.108 40.000 0.00 0.00 40.16 5.12
7954 9279 4.430137 AGTTGTACTAAATCAGCGACGA 57.570 40.909 0.00 0.00 0.00 4.20
7955 9280 4.413087 AGTTGTACTAAATCAGCGACGAG 58.587 43.478 0.00 0.00 0.00 4.18
7956 9281 4.082895 AGTTGTACTAAATCAGCGACGAGT 60.083 41.667 0.00 0.00 0.00 4.18
7957 9282 5.122869 AGTTGTACTAAATCAGCGACGAGTA 59.877 40.000 0.00 0.00 0.00 2.59
7958 9283 5.550232 TGTACTAAATCAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
7959 9284 6.127810 TGTACTAAATCAGCGACGAGTAAT 57.872 37.500 0.00 0.00 0.00 1.89
7960 9285 7.250445 TGTACTAAATCAGCGACGAGTAATA 57.750 36.000 0.00 0.00 0.00 0.98
7961 9286 7.868775 TGTACTAAATCAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
7962 9287 7.801783 TGTACTAAATCAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
7963 9288 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
7964 9289 4.848562 AATCAGCGACGAGTAATATGGA 57.151 40.909 0.00 0.00 0.00 3.41
7965 9290 4.848562 ATCAGCGACGAGTAATATGGAA 57.151 40.909 0.00 0.00 0.00 3.53
7966 9291 3.961182 TCAGCGACGAGTAATATGGAAC 58.039 45.455 0.00 0.00 0.00 3.62
7967 9292 2.719556 CAGCGACGAGTAATATGGAACG 59.280 50.000 0.00 0.00 0.00 3.95
7968 9293 2.049228 GCGACGAGTAATATGGAACGG 58.951 52.381 0.00 0.00 0.00 4.44
7969 9294 2.287188 GCGACGAGTAATATGGAACGGA 60.287 50.000 0.00 0.00 0.00 4.69
7970 9295 3.552541 CGACGAGTAATATGGAACGGAG 58.447 50.000 0.00 0.00 0.00 4.63
7971 9296 3.608707 CGACGAGTAATATGGAACGGAGG 60.609 52.174 0.00 0.00 0.00 4.30
7972 9297 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
7973 9298 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
7974 9299 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
7975 9300 3.896272 GAGTAATATGGAACGGAGGGAGT 59.104 47.826 0.00 0.00 0.00 3.85
7976 9301 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
8240 9565 2.158740 TGTGTAGTTGCTTTGTGGCCTA 60.159 45.455 3.32 0.00 0.00 3.93
8316 9690 5.920273 ACTTGCCAGAAATTATCGTTGTTTG 59.080 36.000 0.00 0.00 0.00 2.93
8319 9693 5.689514 TGCCAGAAATTATCGTTGTTTGTTG 59.310 36.000 0.00 0.00 0.00 3.33
8324 9698 8.591312 CAGAAATTATCGTTGTTTGTTGTTGTT 58.409 29.630 0.00 0.00 0.00 2.83
8325 9699 8.591312 AGAAATTATCGTTGTTTGTTGTTGTTG 58.409 29.630 0.00 0.00 0.00 3.33
8326 9700 7.820044 AATTATCGTTGTTTGTTGTTGTTGT 57.180 28.000 0.00 0.00 0.00 3.32
8327 9701 7.820044 ATTATCGTTGTTTGTTGTTGTTGTT 57.180 28.000 0.00 0.00 0.00 2.83
8328 9702 4.956034 TCGTTGTTTGTTGTTGTTGTTG 57.044 36.364 0.00 0.00 0.00 3.33
8329 9703 3.182572 TCGTTGTTTGTTGTTGTTGTTGC 59.817 39.130 0.00 0.00 0.00 4.17
8330 9704 3.060272 CGTTGTTTGTTGTTGTTGTTGCA 60.060 39.130 0.00 0.00 0.00 4.08
8336 9710 3.430008 TGTTGTTGTTGTTGCATACACG 58.570 40.909 0.00 0.00 36.21 4.49
8369 9756 7.163001 TGCTAATGGTATCTAGCTGTATCAG 57.837 40.000 0.00 0.00 40.99 2.90
8370 9757 6.153510 TGCTAATGGTATCTAGCTGTATCAGG 59.846 42.308 0.00 0.00 40.99 3.86
8385 9772 3.889859 ATCAGGCCATGTATCACCATT 57.110 42.857 5.01 0.00 0.00 3.16
8396 9783 7.223584 CCATGTATCACCATTATCACCTGTTA 58.776 38.462 0.00 0.00 0.00 2.41
8404 9792 8.325787 TCACCATTATCACCTGTTAGTAAATGT 58.674 33.333 0.00 0.00 0.00 2.71
8441 9829 2.033299 CGTTCAACATGACAACTTGGCT 59.967 45.455 0.00 0.00 0.00 4.75
8521 9909 9.614792 AACAGGATTTTTGACATAGTATACTCC 57.385 33.333 9.12 0.00 0.00 3.85
8587 9978 5.816919 ACTGAACGTTTGTGTATTTGGAAG 58.183 37.500 0.46 0.00 0.00 3.46
8588 9979 5.355910 ACTGAACGTTTGTGTATTTGGAAGT 59.644 36.000 0.46 0.00 0.00 3.01
8620 10011 0.983467 TGGCAAGAGTCCACTATGCA 59.017 50.000 15.25 0.00 39.35 3.96
8655 10048 4.150980 CGCTTGTGTTTATCGTTCTACCAA 59.849 41.667 0.00 0.00 0.00 3.67
8663 10056 6.128117 TGTTTATCGTTCTACCAATTGCCTTC 60.128 38.462 0.00 0.00 0.00 3.46
8665 10058 2.039216 TCGTTCTACCAATTGCCTTCCA 59.961 45.455 0.00 0.00 0.00 3.53
8727 10340 7.201785 CCTTTTGACACAATTGTTACTACCAGT 60.202 37.037 8.77 0.58 35.47 4.00
8732 10345 5.238650 ACACAATTGTTACTACCAGTTCAGC 59.761 40.000 8.77 0.00 28.43 4.26
8772 10401 9.929180 TGGAGAATCTATTAGATTGTTTATCCG 57.071 33.333 20.90 0.00 44.41 4.18
8773 10402 9.930693 GGAGAATCTATTAGATTGTTTATCCGT 57.069 33.333 20.90 0.00 44.41 4.69
8777 10406 8.833231 ATCTATTAGATTGTTTATCCGTGTGG 57.167 34.615 0.08 0.00 28.69 4.17
8778 10407 7.788026 TCTATTAGATTGTTTATCCGTGTGGT 58.212 34.615 0.00 0.00 36.30 4.16
8779 10408 8.262227 TCTATTAGATTGTTTATCCGTGTGGTT 58.738 33.333 0.00 0.00 36.30 3.67
8780 10409 7.696992 ATTAGATTGTTTATCCGTGTGGTTT 57.303 32.000 0.00 0.00 36.30 3.27
8781 10410 7.513371 TTAGATTGTTTATCCGTGTGGTTTT 57.487 32.000 0.00 0.00 36.30 2.43
8782 10411 6.009115 AGATTGTTTATCCGTGTGGTTTTC 57.991 37.500 0.00 0.00 36.30 2.29
8852 10481 1.689959 GCAACAAGCAGATGGAAACG 58.310 50.000 0.00 0.00 44.79 3.60
8939 10568 1.302511 GGAAAACCAGCAGCTCCGA 60.303 57.895 0.00 0.00 0.00 4.55
8991 10631 6.449698 GTGTTCAATTTGACATGTGGAAGAT 58.550 36.000 1.15 0.00 0.00 2.40
9097 10737 5.885912 TCTTTTTGGAGCAAGTTTGTCTAGT 59.114 36.000 0.00 0.00 0.00 2.57
9141 10781 5.121611 CACGGTTGTACATAGCATCTTTCAA 59.878 40.000 0.00 0.00 0.00 2.69
9153 10793 9.181805 CATAGCATCTTTCAATTTAGAAGCATG 57.818 33.333 10.17 0.00 37.52 4.06
9198 10839 3.151554 TGCTTGCTTGCATATCCATAGG 58.848 45.455 0.00 0.00 38.12 2.57
9199 10840 3.181441 TGCTTGCTTGCATATCCATAGGA 60.181 43.478 0.00 0.00 38.12 2.94
9202 10843 5.649395 GCTTGCTTGCATATCCATAGGATTA 59.351 40.000 3.55 0.00 39.79 1.75
9209 10850 8.593945 TTGCATATCCATAGGATTATTTTCCC 57.406 34.615 3.55 0.00 39.79 3.97
9210 10851 7.125391 TGCATATCCATAGGATTATTTTCCCC 58.875 38.462 3.55 0.00 39.79 4.81
9215 10856 8.772647 ATCCATAGGATTATTTTCCCCTTAGA 57.227 34.615 0.00 0.00 39.79 2.10
9229 10870 9.627123 TTTTCCCCTTAGAATTCATATGTACTG 57.373 33.333 8.44 0.00 0.00 2.74
9264 10905 6.149640 GGAAAGTTTTCATCCACTCTAACCTC 59.850 42.308 6.90 0.00 38.92 3.85
9265 10906 6.441088 AAGTTTTCATCCACTCTAACCTCT 57.559 37.500 0.00 0.00 0.00 3.69
9266 10907 6.441088 AGTTTTCATCCACTCTAACCTCTT 57.559 37.500 0.00 0.00 0.00 2.85
9272 10913 5.485353 TCATCCACTCTAACCTCTTGTGAAT 59.515 40.000 0.00 0.00 0.00 2.57
9278 10919 7.206687 CACTCTAACCTCTTGTGAATATCCTC 58.793 42.308 0.00 0.00 0.00 3.71
9302 10943 6.817641 TCTGTTTTTCTTGTGCACAATCAATT 59.182 30.769 31.17 0.00 35.02 2.32
9342 10983 5.557891 AGTATTGAAAAGACATGCTGCTC 57.442 39.130 0.00 0.00 41.34 4.26
9343 10984 5.251764 AGTATTGAAAAGACATGCTGCTCT 58.748 37.500 0.00 0.00 41.34 4.09
9344 10985 6.409704 AGTATTGAAAAGACATGCTGCTCTA 58.590 36.000 0.00 0.00 41.34 2.43
9345 10986 6.881065 AGTATTGAAAAGACATGCTGCTCTAA 59.119 34.615 0.00 0.00 41.34 2.10
9346 10987 6.770746 ATTGAAAAGACATGCTGCTCTAAT 57.229 33.333 0.00 0.00 0.00 1.73
9347 10988 5.808042 TGAAAAGACATGCTGCTCTAATC 57.192 39.130 0.00 0.00 0.00 1.75
9348 10989 4.637534 TGAAAAGACATGCTGCTCTAATCC 59.362 41.667 0.00 0.00 0.00 3.01
9349 10990 4.500499 AAAGACATGCTGCTCTAATCCT 57.500 40.909 0.00 0.00 0.00 3.24
9350 10991 4.500499 AAGACATGCTGCTCTAATCCTT 57.500 40.909 0.00 0.00 0.00 3.36
9351 10992 5.620738 AAGACATGCTGCTCTAATCCTTA 57.379 39.130 0.00 0.00 0.00 2.69
9352 10993 5.212532 AGACATGCTGCTCTAATCCTTAG 57.787 43.478 0.00 0.00 34.52 2.18
9353 10994 4.653341 AGACATGCTGCTCTAATCCTTAGT 59.347 41.667 0.00 0.00 34.81 2.24
9354 10995 5.130145 AGACATGCTGCTCTAATCCTTAGTT 59.870 40.000 0.00 0.00 34.81 2.24
9355 10996 5.749462 ACATGCTGCTCTAATCCTTAGTTT 58.251 37.500 0.00 0.00 34.81 2.66
9356 10997 6.889198 ACATGCTGCTCTAATCCTTAGTTTA 58.111 36.000 0.00 0.00 34.81 2.01
9357 10998 7.512992 ACATGCTGCTCTAATCCTTAGTTTAT 58.487 34.615 0.00 0.00 34.81 1.40
9358 10999 8.651389 ACATGCTGCTCTAATCCTTAGTTTATA 58.349 33.333 0.00 0.00 34.81 0.98
9359 11000 9.494271 CATGCTGCTCTAATCCTTAGTTTATAA 57.506 33.333 0.00 0.00 34.81 0.98
9384 11025 3.077484 TGAGAATCAAAGAGGCCCTTG 57.923 47.619 0.00 0.56 45.97 3.61
9385 11026 1.747924 GAGAATCAAAGAGGCCCTTGC 59.252 52.381 0.00 0.00 34.79 4.01
9386 11027 1.357079 AGAATCAAAGAGGCCCTTGCT 59.643 47.619 0.00 0.00 37.74 3.91
9387 11028 1.475682 GAATCAAAGAGGCCCTTGCTG 59.524 52.381 0.00 0.00 37.74 4.41
9388 11029 0.700564 ATCAAAGAGGCCCTTGCTGA 59.299 50.000 0.00 5.04 37.74 4.26
9389 11030 0.478072 TCAAAGAGGCCCTTGCTGAA 59.522 50.000 0.00 0.00 37.74 3.02
9390 11031 1.133513 TCAAAGAGGCCCTTGCTGAAA 60.134 47.619 0.00 0.00 37.74 2.69
9391 11032 1.897802 CAAAGAGGCCCTTGCTGAAAT 59.102 47.619 0.00 0.00 37.74 2.17
9392 11033 1.844687 AAGAGGCCCTTGCTGAAATC 58.155 50.000 0.00 0.00 37.74 2.17
9393 11034 0.700564 AGAGGCCCTTGCTGAAATCA 59.299 50.000 0.00 0.00 37.74 2.57
9394 11035 1.287146 AGAGGCCCTTGCTGAAATCAT 59.713 47.619 0.00 0.00 37.74 2.45
9395 11036 1.680207 GAGGCCCTTGCTGAAATCATC 59.320 52.381 0.00 0.00 37.74 2.92
9396 11037 0.749049 GGCCCTTGCTGAAATCATCC 59.251 55.000 0.00 0.00 37.74 3.51
9397 11038 0.383231 GCCCTTGCTGAAATCATCCG 59.617 55.000 0.00 0.00 33.53 4.18
9398 11039 2.018644 GCCCTTGCTGAAATCATCCGA 61.019 52.381 0.00 0.00 33.53 4.55
9399 11040 2.368439 CCCTTGCTGAAATCATCCGAA 58.632 47.619 0.00 0.00 0.00 4.30
9400 11041 2.098117 CCCTTGCTGAAATCATCCGAAC 59.902 50.000 0.00 0.00 0.00 3.95
9401 11042 3.012518 CCTTGCTGAAATCATCCGAACT 58.987 45.455 0.00 0.00 0.00 3.01
9402 11043 4.191544 CCTTGCTGAAATCATCCGAACTA 58.808 43.478 0.00 0.00 0.00 2.24
9403 11044 4.272018 CCTTGCTGAAATCATCCGAACTAG 59.728 45.833 0.00 0.00 0.00 2.57
9404 11045 4.736126 TGCTGAAATCATCCGAACTAGA 57.264 40.909 0.00 0.00 0.00 2.43
9405 11046 4.686972 TGCTGAAATCATCCGAACTAGAG 58.313 43.478 0.00 0.00 0.00 2.43
9406 11047 4.402474 TGCTGAAATCATCCGAACTAGAGA 59.598 41.667 0.00 0.00 0.00 3.10
9407 11048 5.105351 TGCTGAAATCATCCGAACTAGAGAA 60.105 40.000 0.00 0.00 0.00 2.87
9408 11049 5.461737 GCTGAAATCATCCGAACTAGAGAAG 59.538 44.000 0.00 0.00 0.00 2.85
9409 11050 5.352284 TGAAATCATCCGAACTAGAGAAGC 58.648 41.667 0.00 0.00 0.00 3.86
9410 11051 4.329462 AATCATCCGAACTAGAGAAGCC 57.671 45.455 0.00 0.00 0.00 4.35
9411 11052 3.019799 TCATCCGAACTAGAGAAGCCT 57.980 47.619 0.00 0.00 0.00 4.58
9412 11053 3.366396 TCATCCGAACTAGAGAAGCCTT 58.634 45.455 0.00 0.00 0.00 4.35
9413 11054 3.769844 TCATCCGAACTAGAGAAGCCTTT 59.230 43.478 0.00 0.00 0.00 3.11
9414 11055 4.954202 TCATCCGAACTAGAGAAGCCTTTA 59.046 41.667 0.00 0.00 0.00 1.85
9415 11056 5.598830 TCATCCGAACTAGAGAAGCCTTTAT 59.401 40.000 0.00 0.00 0.00 1.40
9416 11057 6.776116 TCATCCGAACTAGAGAAGCCTTTATA 59.224 38.462 0.00 0.00 0.00 0.98
9417 11058 7.451877 TCATCCGAACTAGAGAAGCCTTTATAT 59.548 37.037 0.00 0.00 0.00 0.86
9418 11059 8.740906 CATCCGAACTAGAGAAGCCTTTATATA 58.259 37.037 0.00 0.00 0.00 0.86
9419 11060 8.108551 TCCGAACTAGAGAAGCCTTTATATAC 57.891 38.462 0.00 0.00 0.00 1.47
9478 11119 8.634475 AGACAAATTTGAAGCAAGAACTAAAC 57.366 30.769 24.64 0.00 0.00 2.01
9794 14510 6.231951 AGAAGGAAGCACTAAGTTAGTTTCC 58.768 40.000 26.06 26.06 42.23 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 140 8.460831 AAACCACATCAAATAATAAAAGCGTC 57.539 30.769 0.00 0.00 0.00 5.19
183 192 1.597742 CTTCAACACCACCACCTCAG 58.402 55.000 0.00 0.00 0.00 3.35
188 197 2.568623 ATCTCCTTCAACACCACCAC 57.431 50.000 0.00 0.00 0.00 4.16
221 230 4.803426 CTCCGGCAGCGACACCTC 62.803 72.222 0.00 0.00 0.00 3.85
227 236 3.733507 ATACTCCCTCCGGCAGCGA 62.734 63.158 0.00 0.00 0.00 4.93
233 242 4.223032 ACATAGCAATAATACTCCCTCCGG 59.777 45.833 0.00 0.00 0.00 5.14
263 272 2.037772 TCAACAACTCTTCCTCTGCCTC 59.962 50.000 0.00 0.00 0.00 4.70
321 330 3.436243 ACCTCTTCAATCCTCTTCGAGT 58.564 45.455 0.00 0.00 0.00 4.18
341 350 2.095252 GGAAGACGAAGCTGCCGAC 61.095 63.158 14.59 9.01 0.00 4.79
344 353 1.004440 AGTGGAAGACGAAGCTGCC 60.004 57.895 0.00 0.00 33.83 4.85
346 355 2.447244 AAGAGTGGAAGACGAAGCTG 57.553 50.000 0.00 0.00 0.00 4.24
416 425 4.817517 TCTAGAAATCGTTGAAGGGACAC 58.182 43.478 0.00 0.00 0.00 3.67
479 488 5.481105 TGTAAACGTCCTTGTTATACCAGG 58.519 41.667 0.00 0.00 0.00 4.45
492 501 4.759516 AAATGGACACATGTAAACGTCC 57.240 40.909 20.81 20.81 46.69 4.79
494 503 6.385649 AAGAAAATGGACACATGTAAACGT 57.614 33.333 0.00 0.00 37.40 3.99
496 505 6.701400 AGCAAAGAAAATGGACACATGTAAAC 59.299 34.615 0.00 0.00 37.40 2.01
499 508 5.771469 CAGCAAAGAAAATGGACACATGTA 58.229 37.500 0.00 0.00 37.40 2.29
540 550 1.883275 ACGTTGCCCATCGAAAATTGA 59.117 42.857 5.82 0.00 0.00 2.57
779 798 0.040204 CATTCCAAGGTTCCCCTGCT 59.960 55.000 0.00 0.00 41.56 4.24
1296 1323 1.535015 GCTAGAGACTGATGGCACGTC 60.535 57.143 0.00 0.00 0.00 4.34
1340 1367 9.449719 AGACAAATAACTTAAATACTGTCCCAG 57.550 33.333 0.00 0.00 33.94 4.45
1364 1392 6.321435 TGCGTCTCTAGGATGAGAAATTTAGA 59.679 38.462 0.00 0.00 43.68 2.10
1382 1410 3.001736 GCTACATTTTGATCCTGCGTCTC 59.998 47.826 0.00 0.00 0.00 3.36
1387 1415 6.814506 ATATGAGCTACATTTTGATCCTGC 57.185 37.500 4.35 0.00 40.07 4.85
1421 1449 0.971959 TCCGCCCACATACCGTTAGT 60.972 55.000 0.00 0.00 0.00 2.24
1436 1464 5.154222 CAAAAGACCTCTTGTTTATTCCGC 58.846 41.667 0.00 0.00 36.12 5.54
1440 1468 9.981460 ATATCTCCAAAAGACCTCTTGTTTATT 57.019 29.630 0.00 0.00 36.65 1.40
1449 1477 7.554118 TCAATGTTGATATCTCCAAAAGACCTC 59.446 37.037 3.98 0.00 32.06 3.85
1454 1482 8.229253 TCCATCAATGTTGATATCTCCAAAAG 57.771 34.615 7.84 0.00 45.62 2.27
1511 1539 5.697826 ACAGAGCTCTTACAAACTACGTAC 58.302 41.667 15.27 0.00 0.00 3.67
1512 1540 5.954296 ACAGAGCTCTTACAAACTACGTA 57.046 39.130 15.27 0.00 0.00 3.57
1513 1541 4.850347 ACAGAGCTCTTACAAACTACGT 57.150 40.909 15.27 1.44 0.00 3.57
1514 1542 5.612709 GCAAACAGAGCTCTTACAAACTACG 60.613 44.000 15.27 0.73 0.00 3.51
1515 1543 5.467063 AGCAAACAGAGCTCTTACAAACTAC 59.533 40.000 15.27 0.00 38.01 2.73
1516 1544 5.611374 AGCAAACAGAGCTCTTACAAACTA 58.389 37.500 15.27 0.00 38.01 2.24
1649 1694 7.120138 TGCATAATCACTATAATCATGCACCAG 59.880 37.037 2.43 0.00 41.53 4.00
1652 1697 7.752239 GGTTGCATAATCACTATAATCATGCAC 59.248 37.037 5.88 2.82 44.85 4.57
1673 1718 7.816640 TCACTAGAACAGAAAATAATGGTTGC 58.183 34.615 0.00 0.00 0.00 4.17
1767 1812 6.801718 ATCATGATCACAACCCAAATTCAT 57.198 33.333 1.18 0.00 0.00 2.57
1783 1828 4.951715 TGCTAAGAAACCAGCAATCATGAT 59.048 37.500 1.18 1.18 44.49 2.45
1926 1972 4.906618 TCAAATGTGTCTTCTAGGGTTCC 58.093 43.478 0.00 0.00 0.00 3.62
1975 2021 4.316025 CCTATCTGGGGAAAGTCCAAAA 57.684 45.455 0.00 0.00 38.64 2.44
2031 2077 4.660789 ATCAACAATGCAAGGAATAGCC 57.339 40.909 0.00 0.00 0.00 3.93
2076 2124 4.315803 GTTGTACTACAAGTCATGCCACT 58.684 43.478 1.63 0.00 39.00 4.00
2084 2132 3.057736 TGCTCGAGGTTGTACTACAAGTC 60.058 47.826 15.58 2.32 39.00 3.01
2163 2214 6.883129 ACAACAACAACAACAAAAACTAAGC 58.117 32.000 0.00 0.00 0.00 3.09
2164 2215 8.331742 ACAACAACAACAACAACAAAAACTAAG 58.668 29.630 0.00 0.00 0.00 2.18
2165 2216 8.197988 ACAACAACAACAACAACAAAAACTAA 57.802 26.923 0.00 0.00 0.00 2.24
2166 2217 7.772332 ACAACAACAACAACAACAAAAACTA 57.228 28.000 0.00 0.00 0.00 2.24
2167 2218 6.670077 ACAACAACAACAACAACAAAAACT 57.330 29.167 0.00 0.00 0.00 2.66
2168 2219 6.743172 ACAACAACAACAACAACAACAAAAAC 59.257 30.769 0.00 0.00 0.00 2.43
2169 2220 6.842163 ACAACAACAACAACAACAACAAAAA 58.158 28.000 0.00 0.00 0.00 1.94
2170 2221 6.422776 ACAACAACAACAACAACAACAAAA 57.577 29.167 0.00 0.00 0.00 2.44
2171 2222 6.757010 AGTACAACAACAACAACAACAACAAA 59.243 30.769 0.00 0.00 0.00 2.83
2172 2223 6.273825 AGTACAACAACAACAACAACAACAA 58.726 32.000 0.00 0.00 0.00 2.83
2173 2224 5.833082 AGTACAACAACAACAACAACAACA 58.167 33.333 0.00 0.00 0.00 3.33
2174 2225 6.525280 CCTAGTACAACAACAACAACAACAAC 59.475 38.462 0.00 0.00 0.00 3.32
2175 2226 6.430308 TCCTAGTACAACAACAACAACAACAA 59.570 34.615 0.00 0.00 0.00 2.83
2176 2227 5.938710 TCCTAGTACAACAACAACAACAACA 59.061 36.000 0.00 0.00 0.00 3.33
2177 2228 6.425577 TCCTAGTACAACAACAACAACAAC 57.574 37.500 0.00 0.00 0.00 3.32
2183 2234 4.514066 CCAACCTCCTAGTACAACAACAAC 59.486 45.833 0.00 0.00 0.00 3.32
2195 2246 1.673168 GCATCTTGCCAACCTCCTAG 58.327 55.000 0.00 0.00 37.42 3.02
2215 2266 0.244721 GGGCATGAAGAAAGCACACC 59.755 55.000 0.00 0.00 0.00 4.16
2222 2273 3.037549 ACCAAACAAGGGCATGAAGAAA 58.962 40.909 0.00 0.00 0.00 2.52
2665 2736 8.941977 GTTACATGAAAATGACTACCACACATA 58.058 33.333 0.00 0.00 0.00 2.29
2704 2775 5.358298 AAAATTGGAACTGCTACTCGAAC 57.642 39.130 0.00 0.00 0.00 3.95
2709 2780 4.452455 CAGACGAAAATTGGAACTGCTACT 59.548 41.667 0.00 0.00 0.00 2.57
2766 2845 2.596346 ACAACATCAATGGACAGGCAA 58.404 42.857 0.00 0.00 0.00 4.52
2805 2884 2.322161 CAAACTGCTCATTTGAAGCGG 58.678 47.619 2.51 2.51 39.01 5.52
2806 2885 2.287788 ACCAAACTGCTCATTTGAAGCG 60.288 45.455 8.80 0.00 39.01 4.68
2893 2978 7.985184 ACAGAAACGATGCTATAAAAGGTATCA 59.015 33.333 0.00 0.00 0.00 2.15
3043 3255 6.052360 GGTTTGAAAAATAAGTGAAAGCCCA 58.948 36.000 0.00 0.00 0.00 5.36
3080 3293 1.204941 CTAGTACGGAAAGGCAGCTGT 59.795 52.381 16.64 0.00 0.00 4.40
3276 3864 3.058639 GCCATTTGATACATCTCTTCCGC 60.059 47.826 0.00 0.00 0.00 5.54
3384 3972 6.475504 TCCAGAAGCAAGATTGTGAAGAATA 58.524 36.000 0.00 0.00 0.00 1.75
3879 4470 4.038271 TGATTGGAGTGCAAGAAAGGAT 57.962 40.909 2.75 0.00 0.00 3.24
3926 4517 2.652590 AGGAAGCTGAGGATGAAATGC 58.347 47.619 0.00 0.00 33.28 3.56
4031 4622 1.983972 CTCCTGTCGGAAGTTTCTCG 58.016 55.000 0.00 0.00 39.29 4.04
4131 4722 4.768583 AGTGAATCTTGATCTCAGCTTCC 58.231 43.478 0.00 0.00 0.00 3.46
4194 5155 0.107654 GCGGAGTTGTGGGAGCTAAT 60.108 55.000 0.00 0.00 0.00 1.73
4295 5266 2.808598 GGAGATACCCAGAGTGCGA 58.191 57.895 0.00 0.00 0.00 5.10
4322 5293 4.750460 GGTCAACGACAGTCAGCA 57.250 55.556 0.41 0.00 33.68 4.41
4341 5312 1.620739 GGCAGAGGATCAGGCTCACA 61.621 60.000 0.00 0.00 43.92 3.58
4484 5455 2.611518 GGAGATTTCTGGAGTGTGACG 58.388 52.381 0.00 0.00 0.00 4.35
4486 5457 1.550524 CGGGAGATTTCTGGAGTGTGA 59.449 52.381 0.00 0.00 0.00 3.58
4514 5485 1.432270 GCATCCAGACGGCAGTTAGC 61.432 60.000 0.00 0.00 44.65 3.09
4524 5495 2.187946 CCCGTCAGGCATCCAGAC 59.812 66.667 0.00 0.00 36.81 3.51
4571 5542 3.207669 CCAAGCTCCTGGATGCGC 61.208 66.667 0.00 0.00 38.96 6.09
4639 5610 1.226888 CCACCGTCGCTAGCTAACC 60.227 63.158 13.93 0.00 0.00 2.85
4786 5757 4.250305 AACGCGTTGCCCCTCTGT 62.250 61.111 26.00 0.00 0.00 3.41
4798 5769 1.923204 CCTCTCAATCTTCAGAACGCG 59.077 52.381 3.53 3.53 0.00 6.01
4933 5904 4.021894 ACTGTCATAGGCCTAACATCGATC 60.022 45.833 18.42 2.76 0.00 3.69
4981 5952 5.860182 CAGTCTGACTTTTTGCACATAATGG 59.140 40.000 7.77 0.00 0.00 3.16
5029 6000 7.758980 CCGATATTTGGTTCAAACATTTCATCA 59.241 33.333 0.00 0.00 36.13 3.07
5067 6038 5.180304 GCTAGCAGATGCCCTAAACTTAATC 59.820 44.000 10.63 0.00 43.38 1.75
5339 6310 2.928334 CTTTAGCCATGAGACCTGCAT 58.072 47.619 0.00 0.00 0.00 3.96
5637 6610 0.036388 AGAATACCACACGCCCACTG 60.036 55.000 0.00 0.00 0.00 3.66
6265 7588 9.557061 AGTCTTTTAACCTTGTTTAACTAGGAG 57.443 33.333 27.07 15.68 42.55 3.69
6379 7702 1.604604 TAAACTTGTCACAGCCTGGC 58.395 50.000 11.65 11.65 0.00 4.85
6416 7739 3.244078 TGTTCTCGCTAACAATGACAGGT 60.244 43.478 0.57 0.00 36.45 4.00
6653 7976 3.632855 GCCTGTAGCTTTGATAATGGC 57.367 47.619 0.00 0.00 38.99 4.40
6984 8308 8.789881 ATTTGTCATGAAAAACGTTCGATTTA 57.210 26.923 13.32 0.00 0.00 1.40
7014 8338 0.250513 AACTTGCCATCCTCGGAGAC 59.749 55.000 6.58 0.00 0.00 3.36
7101 8426 0.460459 TGGCGCAATGATGGCAAATG 60.460 50.000 10.83 0.00 37.75 2.32
7201 8526 5.565509 AGATGACAGAGAACAGAGACAGTA 58.434 41.667 0.00 0.00 0.00 2.74
7547 8872 0.879400 GGCTGGCAGATGATGTCTCG 60.879 60.000 20.86 0.00 34.00 4.04
7733 9058 4.279420 GCTCCAGTCTTCTTTGATTTTGGT 59.721 41.667 0.00 0.00 0.00 3.67
7868 9193 9.925268 AGTAGTTGTGTTTACATTTTTAAGTCG 57.075 29.630 0.00 0.00 36.53 4.18
7893 9218 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
7894 9219 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
7895 9220 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
7896 9221 3.608707 CGACGAGTAATATGGAACGGAGG 60.609 52.174 0.00 0.00 0.00 4.30
7897 9222 3.552541 CGACGAGTAATATGGAACGGAG 58.447 50.000 0.00 0.00 0.00 4.63
7898 9223 2.287188 GCGACGAGTAATATGGAACGGA 60.287 50.000 0.00 0.00 0.00 4.69
7899 9224 2.049228 GCGACGAGTAATATGGAACGG 58.951 52.381 0.00 0.00 0.00 4.44
7900 9225 2.719556 CAGCGACGAGTAATATGGAACG 59.280 50.000 0.00 0.00 0.00 3.95
7901 9226 3.961182 TCAGCGACGAGTAATATGGAAC 58.039 45.455 0.00 0.00 0.00 3.62
7902 9227 4.848562 ATCAGCGACGAGTAATATGGAA 57.151 40.909 0.00 0.00 0.00 3.53
7903 9228 4.848562 AATCAGCGACGAGTAATATGGA 57.151 40.909 0.00 0.00 0.00 3.41
7904 9229 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
7905 9230 7.801783 TGTACTAAATCAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
7906 9231 7.868775 TGTACTAAATCAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
7907 9232 7.250445 TGTACTAAATCAGCGACGAGTAATA 57.750 36.000 0.00 0.00 0.00 0.98
7908 9233 6.127810 TGTACTAAATCAGCGACGAGTAAT 57.872 37.500 0.00 0.00 0.00 1.89
7909 9234 5.550232 TGTACTAAATCAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
7910 9235 5.550232 TTGTACTAAATCAGCGACGAGTA 57.450 39.130 0.00 0.00 0.00 2.59
7911 9236 4.430137 TTGTACTAAATCAGCGACGAGT 57.570 40.909 0.00 0.00 0.00 4.18
7912 9237 4.857588 ACTTTGTACTAAATCAGCGACGAG 59.142 41.667 0.00 0.00 0.00 4.18
7913 9238 4.801891 ACTTTGTACTAAATCAGCGACGA 58.198 39.130 0.00 0.00 0.00 4.20
7914 9239 5.107607 ACAACTTTGTACTAAATCAGCGACG 60.108 40.000 0.00 0.00 40.16 5.12
7915 9240 6.224420 ACAACTTTGTACTAAATCAGCGAC 57.776 37.500 0.00 0.00 40.16 5.19
7928 9253 6.088483 CGTCGCTGATTTAGTACAACTTTGTA 59.912 38.462 0.00 0.00 42.35 2.41
7929 9254 5.107607 CGTCGCTGATTTAGTACAACTTTGT 60.108 40.000 0.00 0.00 44.86 2.83
7930 9255 5.118050 TCGTCGCTGATTTAGTACAACTTTG 59.882 40.000 0.00 0.00 0.00 2.77
7931 9256 5.224888 TCGTCGCTGATTTAGTACAACTTT 58.775 37.500 0.00 0.00 0.00 2.66
7932 9257 4.801891 TCGTCGCTGATTTAGTACAACTT 58.198 39.130 0.00 0.00 0.00 2.66
7933 9258 4.082895 ACTCGTCGCTGATTTAGTACAACT 60.083 41.667 0.00 0.00 0.00 3.16
7934 9259 4.164294 ACTCGTCGCTGATTTAGTACAAC 58.836 43.478 0.00 0.00 0.00 3.32
7935 9260 4.430137 ACTCGTCGCTGATTTAGTACAA 57.570 40.909 0.00 0.00 0.00 2.41
7936 9261 5.550232 TTACTCGTCGCTGATTTAGTACA 57.450 39.130 0.00 0.00 0.00 2.90
7937 9262 7.270793 CCATATTACTCGTCGCTGATTTAGTAC 59.729 40.741 0.00 0.00 0.00 2.73
7938 9263 7.173735 TCCATATTACTCGTCGCTGATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
7939 9264 6.016527 TCCATATTACTCGTCGCTGATTTAGT 60.017 38.462 0.00 0.00 0.00 2.24
7940 9265 6.379386 TCCATATTACTCGTCGCTGATTTAG 58.621 40.000 0.00 0.00 0.00 1.85
7941 9266 6.321848 TCCATATTACTCGTCGCTGATTTA 57.678 37.500 0.00 0.00 0.00 1.40
7942 9267 5.196341 TCCATATTACTCGTCGCTGATTT 57.804 39.130 0.00 0.00 0.00 2.17
7943 9268 4.848562 TCCATATTACTCGTCGCTGATT 57.151 40.909 0.00 0.00 0.00 2.57
7944 9269 4.547532 GTTCCATATTACTCGTCGCTGAT 58.452 43.478 0.00 0.00 0.00 2.90
7945 9270 3.547413 CGTTCCATATTACTCGTCGCTGA 60.547 47.826 0.00 0.00 0.00 4.26
7946 9271 2.719556 CGTTCCATATTACTCGTCGCTG 59.280 50.000 0.00 0.00 0.00 5.18
7947 9272 2.287427 CCGTTCCATATTACTCGTCGCT 60.287 50.000 0.00 0.00 0.00 4.93
7948 9273 2.049228 CCGTTCCATATTACTCGTCGC 58.951 52.381 0.00 0.00 0.00 5.19
7949 9274 3.552541 CTCCGTTCCATATTACTCGTCG 58.447 50.000 0.00 0.00 0.00 5.12
7950 9275 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
7951 9276 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
7952 9277 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
7953 9278 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
7954 9279 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
7955 9280 5.997384 ATACTCCCTCCGTTCCATATTAC 57.003 43.478 0.00 0.00 0.00 1.89
7956 9281 7.731688 AGTAAATACTCCCTCCGTTCCATATTA 59.268 37.037 0.00 0.00 0.00 0.98
7957 9282 5.906772 AAATACTCCCTCCGTTCCATATT 57.093 39.130 0.00 0.00 0.00 1.28
7958 9283 6.082707 AGTAAATACTCCCTCCGTTCCATAT 58.917 40.000 0.00 0.00 0.00 1.78
7959 9284 5.461327 AGTAAATACTCCCTCCGTTCCATA 58.539 41.667 0.00 0.00 0.00 2.74
7960 9285 4.296056 AGTAAATACTCCCTCCGTTCCAT 58.704 43.478 0.00 0.00 0.00 3.41
7961 9286 3.716431 AGTAAATACTCCCTCCGTTCCA 58.284 45.455 0.00 0.00 0.00 3.53
7962 9287 5.859205 TTAGTAAATACTCCCTCCGTTCC 57.141 43.478 0.00 0.00 37.73 3.62
7963 9288 6.041296 TCCATTAGTAAATACTCCCTCCGTTC 59.959 42.308 0.00 0.00 37.73 3.95
7964 9289 5.901276 TCCATTAGTAAATACTCCCTCCGTT 59.099 40.000 0.00 0.00 37.73 4.44
7965 9290 5.461327 TCCATTAGTAAATACTCCCTCCGT 58.539 41.667 0.00 0.00 37.73 4.69
7966 9291 5.539193 ACTCCATTAGTAAATACTCCCTCCG 59.461 44.000 0.00 0.00 36.36 4.63
7967 9292 6.326843 ACACTCCATTAGTAAATACTCCCTCC 59.673 42.308 0.00 0.00 35.76 4.30
7968 9293 7.362802 ACACTCCATTAGTAAATACTCCCTC 57.637 40.000 0.00 0.00 35.76 4.30
7969 9294 6.326843 GGACACTCCATTAGTAAATACTCCCT 59.673 42.308 0.00 0.00 35.76 4.20
7970 9295 6.099269 TGGACACTCCATTAGTAAATACTCCC 59.901 42.308 0.00 0.00 42.67 4.30
7971 9296 7.120923 TGGACACTCCATTAGTAAATACTCC 57.879 40.000 0.00 0.00 42.67 3.85
8026 9351 1.963515 GAACCTGAGGTTGGCAATTGT 59.036 47.619 23.60 0.00 46.95 2.71
8240 9565 5.964758 TGCAATTGACAACAAGAAAGAACT 58.035 33.333 10.34 0.00 39.46 3.01
8316 9690 3.480668 GTCGTGTATGCAACAACAACAAC 59.519 43.478 0.00 0.00 40.63 3.32
8319 9693 3.242608 ACAGTCGTGTATGCAACAACAAC 60.243 43.478 0.00 0.00 40.63 3.32
8324 9698 1.343142 AGGACAGTCGTGTATGCAACA 59.657 47.619 0.00 0.00 36.88 3.33
8325 9699 2.080286 AGGACAGTCGTGTATGCAAC 57.920 50.000 0.00 0.00 36.88 4.17
8326 9700 2.412870 CAAGGACAGTCGTGTATGCAA 58.587 47.619 0.00 0.00 36.88 4.08
8327 9701 1.939381 GCAAGGACAGTCGTGTATGCA 60.939 52.381 11.76 0.00 39.18 3.96
8328 9702 0.721718 GCAAGGACAGTCGTGTATGC 59.278 55.000 0.00 0.00 36.88 3.14
8329 9703 2.370281 AGCAAGGACAGTCGTGTATG 57.630 50.000 0.00 0.00 36.88 2.39
8330 9704 4.433615 CATTAGCAAGGACAGTCGTGTAT 58.566 43.478 0.00 0.00 36.88 2.29
8336 9710 5.283457 AGATACCATTAGCAAGGACAGTC 57.717 43.478 0.00 0.00 0.00 3.51
8369 9756 3.758554 GGTGATAATGGTGATACATGGCC 59.241 47.826 0.00 0.00 0.00 5.36
8370 9757 4.456911 CAGGTGATAATGGTGATACATGGC 59.543 45.833 0.00 0.00 0.00 4.40
8396 9783 7.148474 ACGCTGATGTTTCGAATTACATTTACT 60.148 33.333 14.88 0.00 35.24 2.24
8404 9792 5.050023 TGTTGAACGCTGATGTTTCGAATTA 60.050 36.000 0.00 0.00 30.75 1.40
8410 9798 3.908382 GTCATGTTGAACGCTGATGTTTC 59.092 43.478 4.13 0.00 30.75 2.78
8441 9829 2.566833 ACCAAGAGCTGCATGTGTTA 57.433 45.000 1.02 0.00 0.00 2.41
8521 9909 0.659427 CATGCCATACCAGCAACTCG 59.341 55.000 0.00 0.00 44.83 4.18
8620 10011 3.045601 ACACAAGCGAGCTTATCACTT 57.954 42.857 10.22 0.00 34.50 3.16
8630 10021 4.031426 GGTAGAACGATAAACACAAGCGAG 59.969 45.833 0.00 0.00 0.00 5.03
8633 10026 5.600908 TTGGTAGAACGATAAACACAAGC 57.399 39.130 0.00 0.00 0.00 4.01
8636 10029 5.106475 GGCAATTGGTAGAACGATAAACACA 60.106 40.000 7.72 0.00 0.00 3.72
8727 10340 1.284111 ATCCCATGGGCTGAGCTGAA 61.284 55.000 27.41 5.60 34.68 3.02
8754 10367 8.433421 AACCACACGGATAAACAATCTAATAG 57.567 34.615 0.00 0.00 34.75 1.73
8768 10397 2.357637 CACAACTGAAAACCACACGGAT 59.642 45.455 0.00 0.00 35.59 4.18
8769 10398 1.740585 CACAACTGAAAACCACACGGA 59.259 47.619 0.00 0.00 35.59 4.69
8770 10399 1.797348 GCACAACTGAAAACCACACGG 60.797 52.381 0.00 0.00 38.77 4.94
8771 10400 1.132262 AGCACAACTGAAAACCACACG 59.868 47.619 0.00 0.00 0.00 4.49
8772 10401 2.939460 AGCACAACTGAAAACCACAC 57.061 45.000 0.00 0.00 0.00 3.82
8773 10402 3.616219 ACTAGCACAACTGAAAACCACA 58.384 40.909 0.00 0.00 0.00 4.17
8774 10403 4.632538 AACTAGCACAACTGAAAACCAC 57.367 40.909 0.00 0.00 0.00 4.16
8775 10404 4.271533 CGTAACTAGCACAACTGAAAACCA 59.728 41.667 0.00 0.00 0.00 3.67
8776 10405 4.271776 ACGTAACTAGCACAACTGAAAACC 59.728 41.667 0.00 0.00 0.00 3.27
8777 10406 5.399604 ACGTAACTAGCACAACTGAAAAC 57.600 39.130 0.00 0.00 0.00 2.43
8778 10407 6.425577 AAACGTAACTAGCACAACTGAAAA 57.574 33.333 0.00 0.00 0.00 2.29
8779 10408 6.757947 ACTAAACGTAACTAGCACAACTGAAA 59.242 34.615 0.00 0.00 0.00 2.69
8780 10409 6.275335 ACTAAACGTAACTAGCACAACTGAA 58.725 36.000 0.00 0.00 0.00 3.02
8781 10410 5.835257 ACTAAACGTAACTAGCACAACTGA 58.165 37.500 0.00 0.00 0.00 3.41
8782 10411 6.638063 TGTACTAAACGTAACTAGCACAACTG 59.362 38.462 0.00 0.00 0.00 3.16
8822 10451 2.869233 GCTTGTTGCAGAAAAGGTCA 57.131 45.000 7.08 0.00 42.31 4.02
8852 10481 2.415512 GACCAAGTTCATAACGCCAGAC 59.584 50.000 0.00 0.00 36.23 3.51
8964 10593 4.403752 TCCACATGTCAAATTGAACACCAA 59.596 37.500 0.00 0.00 39.41 3.67
9097 10737 5.448438 CGTGTCGAAAATGAATTTCCTGAA 58.552 37.500 0.00 0.00 43.77 3.02
9179 10820 7.876936 ATAATCCTATGGATATGCAAGCAAG 57.123 36.000 0.00 0.00 42.27 4.01
9227 10868 7.814587 GGATGAAAACTTTCCTATGAAAACCAG 59.185 37.037 0.00 0.00 39.88 4.00
9229 10870 7.598869 GTGGATGAAAACTTTCCTATGAAAACC 59.401 37.037 0.00 0.00 39.88 3.27
9264 10905 8.571336 ACAAGAAAAACAGAGGATATTCACAAG 58.429 33.333 0.00 0.00 0.00 3.16
9265 10906 8.352201 CACAAGAAAAACAGAGGATATTCACAA 58.648 33.333 0.00 0.00 0.00 3.33
9266 10907 7.522073 GCACAAGAAAAACAGAGGATATTCACA 60.522 37.037 0.00 0.00 0.00 3.58
9272 10913 5.129634 TGTGCACAAGAAAAACAGAGGATA 58.870 37.500 19.28 0.00 0.00 2.59
9278 10919 6.592798 ATTGATTGTGCACAAGAAAAACAG 57.407 33.333 33.44 0.00 39.47 3.16
9354 10995 9.071276 GGCCTCTTTGATTCTCATGAATTATAA 57.929 33.333 0.00 0.00 42.43 0.98
9355 10996 7.667219 GGGCCTCTTTGATTCTCATGAATTATA 59.333 37.037 0.84 0.00 42.43 0.98
9356 10997 6.492772 GGGCCTCTTTGATTCTCATGAATTAT 59.507 38.462 0.84 0.00 42.43 1.28
9357 10998 5.829924 GGGCCTCTTTGATTCTCATGAATTA 59.170 40.000 0.84 0.00 42.43 1.40
9358 10999 4.648307 GGGCCTCTTTGATTCTCATGAATT 59.352 41.667 0.84 0.00 42.43 2.17
9359 11000 4.079327 AGGGCCTCTTTGATTCTCATGAAT 60.079 41.667 0.00 0.00 44.79 2.57
9360 11001 3.267812 AGGGCCTCTTTGATTCTCATGAA 59.732 43.478 0.00 0.00 36.54 2.57
9361 11002 2.848694 AGGGCCTCTTTGATTCTCATGA 59.151 45.455 0.00 0.00 0.00 3.07
9362 11003 3.294038 AGGGCCTCTTTGATTCTCATG 57.706 47.619 0.00 0.00 0.00 3.07
9363 11004 3.629087 CAAGGGCCTCTTTGATTCTCAT 58.371 45.455 6.46 0.00 32.41 2.90
9364 11005 2.881403 GCAAGGGCCTCTTTGATTCTCA 60.881 50.000 6.46 0.00 32.41 3.27
9365 11006 1.747924 GCAAGGGCCTCTTTGATTCTC 59.252 52.381 6.46 0.00 32.41 2.87
9366 11007 1.357079 AGCAAGGGCCTCTTTGATTCT 59.643 47.619 6.46 0.00 42.56 2.40
9367 11008 1.475682 CAGCAAGGGCCTCTTTGATTC 59.524 52.381 6.46 0.00 42.56 2.52
9368 11009 1.076024 TCAGCAAGGGCCTCTTTGATT 59.924 47.619 6.46 0.00 42.56 2.57
9369 11010 0.700564 TCAGCAAGGGCCTCTTTGAT 59.299 50.000 6.46 0.00 42.56 2.57
9370 11011 0.478072 TTCAGCAAGGGCCTCTTTGA 59.522 50.000 6.46 8.17 42.56 2.69
9371 11012 1.331214 TTTCAGCAAGGGCCTCTTTG 58.669 50.000 6.46 2.11 42.56 2.77
9372 11013 2.174360 GATTTCAGCAAGGGCCTCTTT 58.826 47.619 6.46 0.00 42.56 2.52
9373 11014 1.076024 TGATTTCAGCAAGGGCCTCTT 59.924 47.619 6.46 0.93 42.56 2.85
9374 11015 0.700564 TGATTTCAGCAAGGGCCTCT 59.299 50.000 6.46 0.00 42.56 3.69
9375 11016 1.680207 GATGATTTCAGCAAGGGCCTC 59.320 52.381 6.46 0.00 42.56 4.70
9376 11017 1.687368 GGATGATTTCAGCAAGGGCCT 60.687 52.381 0.00 0.00 42.56 5.19
9377 11018 0.749049 GGATGATTTCAGCAAGGGCC 59.251 55.000 0.00 0.00 42.56 5.80
9378 11019 0.383231 CGGATGATTTCAGCAAGGGC 59.617 55.000 0.00 0.00 41.61 5.19
9379 11020 2.042686 TCGGATGATTTCAGCAAGGG 57.957 50.000 0.00 0.00 33.17 3.95
9380 11021 3.012518 AGTTCGGATGATTTCAGCAAGG 58.987 45.455 0.00 0.00 33.17 3.61
9381 11022 5.111989 TCTAGTTCGGATGATTTCAGCAAG 58.888 41.667 0.00 0.00 33.17 4.01
9382 11023 5.084818 TCTAGTTCGGATGATTTCAGCAA 57.915 39.130 0.00 0.00 33.17 3.91
9383 11024 4.402474 TCTCTAGTTCGGATGATTTCAGCA 59.598 41.667 0.00 0.00 33.17 4.41
9384 11025 4.938080 TCTCTAGTTCGGATGATTTCAGC 58.062 43.478 0.00 0.00 0.00 4.26
9385 11026 5.461737 GCTTCTCTAGTTCGGATGATTTCAG 59.538 44.000 0.00 0.00 0.00 3.02
9386 11027 5.352284 GCTTCTCTAGTTCGGATGATTTCA 58.648 41.667 0.00 0.00 0.00 2.69
9387 11028 4.747605 GGCTTCTCTAGTTCGGATGATTTC 59.252 45.833 0.00 0.00 0.00 2.17
9388 11029 4.407296 AGGCTTCTCTAGTTCGGATGATTT 59.593 41.667 0.00 0.00 0.00 2.17
9389 11030 3.964031 AGGCTTCTCTAGTTCGGATGATT 59.036 43.478 0.00 0.00 0.00 2.57
9390 11031 3.571590 AGGCTTCTCTAGTTCGGATGAT 58.428 45.455 0.00 0.00 0.00 2.45
9391 11032 3.019799 AGGCTTCTCTAGTTCGGATGA 57.980 47.619 0.00 0.00 0.00 2.92
9392 11033 3.810310 AAGGCTTCTCTAGTTCGGATG 57.190 47.619 0.00 0.00 0.00 3.51
9393 11034 7.784470 ATATAAAGGCTTCTCTAGTTCGGAT 57.216 36.000 0.00 0.00 0.00 4.18
9394 11035 7.722728 TGTATATAAAGGCTTCTCTAGTTCGGA 59.277 37.037 0.00 0.00 0.00 4.55
9395 11036 7.883217 TGTATATAAAGGCTTCTCTAGTTCGG 58.117 38.462 0.00 0.00 0.00 4.30
9396 11037 9.182933 GTTGTATATAAAGGCTTCTCTAGTTCG 57.817 37.037 0.00 0.00 0.00 3.95
9405 11046 9.425577 GGTCATCTAGTTGTATATAAAGGCTTC 57.574 37.037 0.00 0.00 0.00 3.86
9406 11047 9.160412 AGGTCATCTAGTTGTATATAAAGGCTT 57.840 33.333 0.00 0.00 0.00 4.35
9407 11048 8.589338 CAGGTCATCTAGTTGTATATAAAGGCT 58.411 37.037 0.83 0.00 0.00 4.58
9408 11049 8.368668 ACAGGTCATCTAGTTGTATATAAAGGC 58.631 37.037 0.83 0.00 0.00 4.35
9409 11050 9.915629 GACAGGTCATCTAGTTGTATATAAAGG 57.084 37.037 0.83 0.00 0.00 3.11
9410 11051 9.613957 CGACAGGTCATCTAGTTGTATATAAAG 57.386 37.037 0.00 0.00 0.00 1.85
9411 11052 8.080417 GCGACAGGTCATCTAGTTGTATATAAA 58.920 37.037 0.00 0.00 0.00 1.40
9412 11053 7.572539 CGCGACAGGTCATCTAGTTGTATATAA 60.573 40.741 0.00 0.00 0.00 0.98
9413 11054 6.128363 CGCGACAGGTCATCTAGTTGTATATA 60.128 42.308 0.00 0.00 0.00 0.86
9414 11055 5.334957 CGCGACAGGTCATCTAGTTGTATAT 60.335 44.000 0.00 0.00 0.00 0.86
9415 11056 4.024302 CGCGACAGGTCATCTAGTTGTATA 60.024 45.833 0.00 0.00 0.00 1.47
9416 11057 3.243101 CGCGACAGGTCATCTAGTTGTAT 60.243 47.826 0.00 0.00 0.00 2.29
9417 11058 2.096980 CGCGACAGGTCATCTAGTTGTA 59.903 50.000 0.00 0.00 0.00 2.41
9418 11059 1.135373 CGCGACAGGTCATCTAGTTGT 60.135 52.381 0.00 0.00 0.00 3.32
9419 11060 1.550065 CGCGACAGGTCATCTAGTTG 58.450 55.000 0.00 0.00 0.00 3.16
9794 14510 9.739786 GAACAATACAAATTTTCCTATTTTGCG 57.260 29.630 0.00 0.00 34.47 4.85
9850 14567 7.288389 TGCATCAAGCCTAATTTTCTATTGGAT 59.712 33.333 0.00 0.00 44.83 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.