AutoCloner

Multiple sequence alignment - TraesCS5D01G175600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G175600	chr5D	100.000	2399	0	0	1	2399	275404532	275406930	0.000000e+00	4431.0
1	TraesCS5D01G175600	chr5D	84.501	1613	189	25	120	1682	245715510	245717111	0.000000e+00	1537.0
2	TraesCS5D01G175600	chr5D	78.443	1169	203	31	263	1400	275147058	275148208	0.000000e+00	717.0
3	TraesCS5D01G175600	chr5D	87.440	629	65	6	571	1187	275167551	275168177	0.000000e+00	712.0
4	TraesCS5D01G175600	chr5D	78.098	1146	196	35	270	1387	274572412	274571294	0.000000e+00	675.0
5	TraesCS5D01G175600	chr5D	80.907	529	86	6	266	781	274776102	274776628	1.030000e-108	403.0
6	TraesCS5D01G175600	chr5D	82.951	305	36	10	1201	1494	275168247	275168546	6.580000e-66	261.0
7	TraesCS5D01G175600	chr5D	77.586	290	51	7	2083	2370	275169076	275169353	1.910000e-36	163.0
8	TraesCS5D01G175600	chr5D	94.737	38	1	1	2011	2048	387787612	387787648	9.260000e-05	58.4
9	TraesCS5D01G175600	chr5B	95.855	1954	48	9	43	1977	312592292	312594231	0.000000e+00	3129.0
10	TraesCS5D01G175600	chr5B	86.331	1112	126	13	97	1187	309882568	309883674	0.000000e+00	1188.0
11	TraesCS5D01G175600	chr5B	78.204	1147	193	38	270	1387	309665782	309664664	0.000000e+00	680.0
12	TraesCS5D01G175600	chr5B	77.654	1168	214	31	263	1400	309817062	309818212	0.000000e+00	667.0
13	TraesCS5D01G175600	chr5B	94.737	418	18	3	1972	2389	312594263	312594676	0.000000e+00	647.0
14	TraesCS5D01G175600	chr5B	85.152	559	70	10	709	1265	278863716	278864263	5.790000e-156	560.0
15	TraesCS5D01G175600	chr5B	82.951	305	36	10	1201	1494	309883744	309884043	6.580000e-66	261.0
16	TraesCS5D01G175600	chr5B	81.620	321	39	8	1421	1723	278884367	278884049	5.120000e-62	248.0
17	TraesCS5D01G175600	chr5B	76.945	347	58	12	2040	2376	309884528	309884862	6.810000e-41	178.0
18	TraesCS5D01G175600	chr5A	95.849	1590	41	8	40	1619	364349337	364350911	0.000000e+00	2547.0
19	TraesCS5D01G175600	chr5A	84.748	1508	184	20	92	1565	329693266	329694761	0.000000e+00	1469.0
20	TraesCS5D01G175600	chr5A	77.962	1148	194	40	270	1387	363598381	363597263	0.000000e+00	664.0
21	TraesCS5D01G175600	chr5A	82.853	694	95	13	69	743	364136811	364137499	3.410000e-168	601.0
22	TraesCS5D01G175600	chr5A	93.664	363	21	2	2028	2389	364350907	364351268	2.100000e-150	542.0
23	TraesCS5D01G175600	chr5A	83.111	450	72	4	736	1183	364147229	364147676	7.980000e-110	407.0
24	TraesCS5D01G175600	chr5A	88.660	194	18	3	1201	1392	364167446	364167637	1.430000e-57	233.0
25	TraesCS5D01G175600	chr5A	83.750	240	35	4	2040	2276	329695326	329695564	8.630000e-55	224.0
26	TraesCS5D01G175600	chr5A	78.070	342	52	11	2040	2370	364191552	364191881	6.770000e-46	195.0
27	TraesCS5D01G175600	chr3A	87.500	72	6	3	1972	2043	333307258	333307326	1.980000e-11	80.5
28	TraesCS5D01G175600	chr3A	90.909	44	4	0	1972	2015	31846590	31846547	2.580000e-05	60.2
29	TraesCS5D01G175600	chr6A	86.667	75	5	3	1972	2042	591206566	591206639	7.110000e-11	78.7
30	TraesCS5D01G175600	chr7D	93.182	44	3	0	2008	2051	75928927	75928970	5.540000e-07	65.8
31	TraesCS5D01G175600	chr4B	95.000	40	2	0	1972	2011	651511593	651511632	1.990000e-06	63.9
32	TraesCS5D01G175600	chr2B	95.000	40	2	0	1972	2011	386315320	386315359	1.990000e-06	63.9
33	TraesCS5D01G175600	chr3B	94.872	39	2	0	1972	2010	222813522	222813484	7.160000e-06	62.1
34	TraesCS5D01G175600	chr3D	100.000	32	0	0	2011	2042	565081558	565081589	2.580000e-05	60.2
35	TraesCS5D01G175600	chr1D	100.000	32	0	0	2011	2042	445610635	445610604	2.580000e-05	60.2
36	TraesCS5D01G175600	chr1B	92.857	42	2	1	2011	2052	367886772	367886732	2.580000e-05	60.2
37	TraesCS5D01G175600	chr1A	100.000	32	0	0	2011	2042	494443740	494443771	2.580000e-05	60.2
38	TraesCS5D01G175600	chr4A	100.000	30	0	0	1972	2001	75437848	75437819	3.330000e-04	56.5
39	TraesCS5D01G175600	chr2D	100.000	30	0	0	1972	2001	318339154	318339183	3.330000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G175600	chr5D	275404532	275406930	2398	False	4431.000000	4431	100.000000	1	2399	1	chr5D.!!$F4	2398
1	TraesCS5D01G175600	chr5D	245715510	245717111	1601	False	1537.000000	1537	84.501000	120	1682	1	chr5D.!!$F1	1562
2	TraesCS5D01G175600	chr5D	275147058	275148208	1150	False	717.000000	717	78.443000	263	1400	1	chr5D.!!$F3	1137
3	TraesCS5D01G175600	chr5D	274571294	274572412	1118	True	675.000000	675	78.098000	270	1387	1	chr5D.!!$R1	1117
4	TraesCS5D01G175600	chr5D	274776102	274776628	526	False	403.000000	403	80.907000	266	781	1	chr5D.!!$F2	515
5	TraesCS5D01G175600	chr5D	275167551	275169353	1802	False	378.666667	712	82.659000	571	2370	3	chr5D.!!$F6	1799
6	TraesCS5D01G175600	chr5B	312592292	312594676	2384	False	1888.000000	3129	95.296000	43	2389	2	chr5B.!!$F4	2346
7	TraesCS5D01G175600	chr5B	309664664	309665782	1118	True	680.000000	680	78.204000	270	1387	1	chr5B.!!$R2	1117
8	TraesCS5D01G175600	chr5B	309817062	309818212	1150	False	667.000000	667	77.654000	263	1400	1	chr5B.!!$F2	1137
9	TraesCS5D01G175600	chr5B	278863716	278864263	547	False	560.000000	560	85.152000	709	1265	1	chr5B.!!$F1	556
10	TraesCS5D01G175600	chr5B	309882568	309884862	2294	False	542.333333	1188	82.075667	97	2376	3	chr5B.!!$F3	2279
11	TraesCS5D01G175600	chr5A	364349337	364351268	1931	False	1544.500000	2547	94.756500	40	2389	2	chr5A.!!$F6	2349
12	TraesCS5D01G175600	chr5A	329693266	329695564	2298	False	846.500000	1469	84.249000	92	2276	2	chr5A.!!$F5	2184
13	TraesCS5D01G175600	chr5A	363597263	363598381	1118	True	664.000000	664	77.962000	270	1387	1	chr5A.!!$R1	1117
14	TraesCS5D01G175600	chr5A	364136811	364137499	688	False	601.000000	601	82.853000	69	743	1	chr5A.!!$F1	674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
84	85	0.179012	GCTAGCTAGTCCTCCGTCCT	60.179	60.0	21.62	0.0	0.0	3.85	F
168	169	2.158608	CCAGAACCAAAAGAGACCCACT	60.159	50.0	0.00	0.0	0.0	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1101	1130	2.443957	GAAGCCAACCGTTGTCGCTG	62.444	60.0	13.67	0.0	32.15	5.18	R
1540	1657	3.912248	CCTCCAGGTTCTACTAGCCTAA	58.088	50.0	0.00	0.0	36.50	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.892374	CATCCCCAAATTCGAAAAGGC	58.108	47.619	0.00	0.00	0.00	4.35
21	22	2.002505	TCCCCAAATTCGAAAAGGCA	57.997	45.000	0.00	0.00	0.00	4.75
22	23	1.892474	TCCCCAAATTCGAAAAGGCAG	59.108	47.619	0.00	0.00	0.00	4.85
23	24	1.672737	CCCCAAATTCGAAAAGGCAGC	60.673	52.381	0.00	0.00	0.00	5.25
24	25	1.339711	CCAAATTCGAAAAGGCAGCG	58.660	50.000	0.00	0.00	0.00	5.18
25	26	0.710017	CAAATTCGAAAAGGCAGCGC	59.290	50.000	0.00	0.00	0.00	5.92
26	27	0.729140	AAATTCGAAAAGGCAGCGCG	60.729	50.000	0.00	0.00	0.00	6.86
27	28	2.527547	AATTCGAAAAGGCAGCGCGG	62.528	55.000	8.83	2.11	0.00	6.46
28	29	4.673298	TCGAAAAGGCAGCGCGGA	62.673	61.111	13.03	0.00	0.00	5.54
29	30	3.722295	CGAAAAGGCAGCGCGGAA	61.722	61.111	13.03	0.00	0.00	4.30
30	31	2.642700	GAAAAGGCAGCGCGGAAA	59.357	55.556	13.03	0.00	0.00	3.13
31	32	1.212751	GAAAAGGCAGCGCGGAAAT	59.787	52.632	13.03	0.00	0.00	2.17
32	33	0.798389	GAAAAGGCAGCGCGGAAATC	60.798	55.000	13.03	0.00	0.00	2.17
33	34	1.523154	AAAAGGCAGCGCGGAAATCA	61.523	50.000	13.03	0.00	0.00	2.57
34	35	2.200170	AAAGGCAGCGCGGAAATCAC	62.200	55.000	13.03	0.00	0.00	3.06
35	36	3.430862	GGCAGCGCGGAAATCACA	61.431	61.111	13.03	0.00	0.00	3.58
36	37	2.764314	GGCAGCGCGGAAATCACAT	61.764	57.895	13.03	0.00	0.00	3.21
37	38	1.584483	GCAGCGCGGAAATCACATG	60.584	57.895	13.03	0.00	0.00	3.21
38	39	1.796151	CAGCGCGGAAATCACATGT	59.204	52.632	8.83	0.00	0.00	3.21
77	78	2.482333	CCGCGTGCTAGCTAGTCCT	61.482	63.158	21.62	0.00	34.40	3.85
84	85	0.179012	GCTAGCTAGTCCTCCGTCCT	60.179	60.000	21.62	0.00	0.00	3.85
168	169	2.158608	CCAGAACCAAAAGAGACCCACT	60.159	50.000	0.00	0.00	0.00	4.00
1000	1020	2.278596	GAATCGACGCGCTGGCTA	60.279	61.111	5.73	0.00	36.88	3.93
1534	1651	6.147204	ATACCATGAGTAAGTGCAGTGGCA	62.147	45.833	0.00	0.00	40.49	4.92
1608	1773	3.080319	AGGCAGTTCTTCTTGCAAGATC	58.920	45.455	28.89	18.37	34.49	2.75
1614	1798	4.220821	AGTTCTTCTTGCAAGATCGGTAGA	59.779	41.667	28.89	23.47	34.49	2.59
1656	1840	0.186873	AATGACATGGATGGGAGGCC	59.813	55.000	0.00	0.00	0.00	5.19
1697	1885	5.757320	AGTCTGTTTGAACTTCTGATCACAG	59.243	40.000	0.00	0.00	44.66	3.66
1817	2080	9.166173	TCTGAATTGTTCTTACACATTATCCTG	57.834	33.333	0.00	0.00	32.98	3.86
1828	2091	5.126067	ACACATTATCCTGGTATGCTTGAC	58.874	41.667	0.00	0.00	0.00	3.18
1970	2332	6.719370	AGTTAACTAGGTTGCCAATGAATTGA	59.281	34.615	6.26	0.00	40.14	2.57
1977	2339	3.173953	TGCCAATGAATTGAACTCCCT	57.826	42.857	4.58	0.00	40.14	4.20
1978	2340	3.091545	TGCCAATGAATTGAACTCCCTC	58.908	45.455	4.58	0.00	40.14	4.30
1980	2342	3.129988	GCCAATGAATTGAACTCCCTCTG	59.870	47.826	4.58	0.00	40.14	3.35
1984	2346	6.261826	CCAATGAATTGAACTCCCTCTGTATC	59.738	42.308	4.58	0.00	40.14	2.24
1985	2347	6.566079	ATGAATTGAACTCCCTCTGTATCA	57.434	37.500	0.00	0.00	0.00	2.15
2014	2412	9.686683	ATATAAGACCTTTGCTGACACTAAAAT	57.313	29.630	0.00	0.00	0.00	1.82
2099	2506	2.278854	GCGTTTTAACCGCCCTGTATA	58.721	47.619	7.33	0.00	45.20	1.47
2214	2624	6.804770	TTTATTTAGCTTGTTTCGTAGGCA	57.195	33.333	0.00	0.00	0.00	4.75
2232	2642	2.227865	GGCATGTCGCAGGTTTAAGAAA	59.772	45.455	0.00	0.00	45.17	2.52
2233	2643	3.119495	GGCATGTCGCAGGTTTAAGAAAT	60.119	43.478	0.00	0.00	45.17	2.17
2246	2656	9.780413	CAGGTTTAAGAAATGATCTTTTAGCTC	57.220	33.333	6.57	0.00	46.39	4.09
2276	2686	8.027189	TCTATGAATTGTATACCTCCGAAATCG	58.973	37.037	0.00	0.00	39.44	3.34
2389	2799	7.067496	AGTTCCTCACTTTAACTTCTGATGA	57.933	36.000	0.00	0.00	29.25	2.92
2390	2800	7.684529	AGTTCCTCACTTTAACTTCTGATGAT	58.315	34.615	0.00	0.00	29.25	2.45
2391	2801	7.605691	AGTTCCTCACTTTAACTTCTGATGATG	59.394	37.037	0.00	0.00	29.25	3.07
2392	2802	7.009179	TCCTCACTTTAACTTCTGATGATGT	57.991	36.000	0.00	0.00	32.82	3.06
2393	2803	7.099764	TCCTCACTTTAACTTCTGATGATGTC	58.900	38.462	0.00	0.00	31.35	3.06
2394	2804	6.875726	CCTCACTTTAACTTCTGATGATGTCA	59.124	38.462	0.00	0.00	35.05	3.58
2395	2805	7.148507	CCTCACTTTAACTTCTGATGATGTCAC	60.149	40.741	0.00	0.00	32.22	3.67
2396	2806	6.650807	TCACTTTAACTTCTGATGATGTCACC	59.349	38.462	0.00	0.00	32.22	4.02
2397	2807	5.940470	ACTTTAACTTCTGATGATGTCACCC	59.060	40.000	0.00	0.00	32.22	4.61
2398	2808	5.762179	TTAACTTCTGATGATGTCACCCT	57.238	39.130	0.00	0.00	32.22	4.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	2.233431	TGCCTTTTCGAATTTGGGGATG	59.767	45.455	0.00	0.00	0.00	3.51
1	2	2.497273	CTGCCTTTTCGAATTTGGGGAT	59.503	45.455	0.00	0.00	0.00	3.85
2	3	1.892474	CTGCCTTTTCGAATTTGGGGA	59.108	47.619	0.00	0.00	0.00	4.81
3	4	1.672737	GCTGCCTTTTCGAATTTGGGG	60.673	52.381	0.00	0.00	0.00	4.96
4	5	1.713597	GCTGCCTTTTCGAATTTGGG	58.286	50.000	0.00	0.30	0.00	4.12
5	6	1.339711	CGCTGCCTTTTCGAATTTGG	58.660	50.000	0.00	2.91	0.00	3.28
6	7	0.710017	GCGCTGCCTTTTCGAATTTG	59.290	50.000	0.00	0.00	0.00	2.32
7	8	0.729140	CGCGCTGCCTTTTCGAATTT	60.729	50.000	5.56	0.00	0.00	1.82
8	9	1.154225	CGCGCTGCCTTTTCGAATT	60.154	52.632	5.56	0.00	0.00	2.17
9	10	2.480555	CGCGCTGCCTTTTCGAAT	59.519	55.556	5.56	0.00	0.00	3.34
10	11	3.722295	CCGCGCTGCCTTTTCGAA	61.722	61.111	5.56	0.00	0.00	3.71
11	12	4.673298	TCCGCGCTGCCTTTTCGA	62.673	61.111	5.56	0.00	0.00	3.71
12	13	2.527547	ATTTCCGCGCTGCCTTTTCG	62.528	55.000	5.56	0.00	0.00	3.46
13	14	0.798389	GATTTCCGCGCTGCCTTTTC	60.798	55.000	5.56	0.00	0.00	2.29
14	15	1.212751	GATTTCCGCGCTGCCTTTT	59.787	52.632	5.56	0.00	0.00	2.27
15	16	1.971167	TGATTTCCGCGCTGCCTTT	60.971	52.632	5.56	0.00	0.00	3.11
16	17	2.359850	TGATTTCCGCGCTGCCTT	60.360	55.556	5.56	0.00	0.00	4.35
17	18	3.127533	GTGATTTCCGCGCTGCCT	61.128	61.111	5.56	0.00	0.00	4.75
18	19	2.764314	ATGTGATTTCCGCGCTGCC	61.764	57.895	5.56	0.00	0.00	4.85
19	20	1.584483	CATGTGATTTCCGCGCTGC	60.584	57.895	5.56	0.00	0.00	5.25
20	21	0.247814	GACATGTGATTTCCGCGCTG	60.248	55.000	1.15	0.00	0.00	5.18
21	22	1.369091	GGACATGTGATTTCCGCGCT	61.369	55.000	1.15	0.00	0.00	5.92
22	23	1.062525	GGACATGTGATTTCCGCGC	59.937	57.895	1.15	0.00	0.00	6.86
23	24	1.348250	CGGACATGTGATTTCCGCG	59.652	57.895	1.15	0.00	45.35	6.46
26	27	2.009774	CAGGACGGACATGTGATTTCC	58.990	52.381	1.15	3.58	0.00	3.13
27	28	1.398390	GCAGGACGGACATGTGATTTC	59.602	52.381	1.15	0.00	32.48	2.17
28	29	1.453155	GCAGGACGGACATGTGATTT	58.547	50.000	1.15	0.00	32.48	2.17
29	30	0.392998	GGCAGGACGGACATGTGATT	60.393	55.000	1.15	0.00	32.48	2.57
30	31	1.221840	GGCAGGACGGACATGTGAT	59.778	57.895	1.15	0.00	32.48	3.06
31	32	1.763546	TTGGCAGGACGGACATGTGA	61.764	55.000	1.15	0.00	32.48	3.58
32	33	0.888736	TTTGGCAGGACGGACATGTG	60.889	55.000	1.15	0.00	32.48	3.21
33	34	0.889186	GTTTGGCAGGACGGACATGT	60.889	55.000	0.00	0.00	32.48	3.21
34	35	1.875963	GTTTGGCAGGACGGACATG	59.124	57.895	0.00	0.00	0.00	3.21
35	36	1.671054	CGTTTGGCAGGACGGACAT	60.671	57.895	15.08	0.00	35.74	3.06
36	37	2.280524	CGTTTGGCAGGACGGACA	60.281	61.111	15.08	0.00	35.74	4.02
37	38	3.723348	GCGTTTGGCAGGACGGAC	61.723	66.667	21.45	7.26	42.87	4.79
77	78	2.359404	GAGAGGGGACAGGACGGA	59.641	66.667	0.00	0.00	0.00	4.69
84	85	1.916777	GGTTTCGGGAGAGGGGACA	60.917	63.158	0.00	0.00	41.75	4.02
168	169	0.473117	AGGAACCGAGGTGGAGGAAA	60.473	55.000	0.00	0.00	42.00	3.13
927	947	2.032681	GTGACAGGGTCCAGCACC	59.967	66.667	0.00	0.00	45.97	5.01
1000	1020	2.092291	CGACGCGGTACTTGCACAT	61.092	57.895	12.47	0.00	0.00	3.21
1069	1098	2.747460	GCGCACCCAGAGATGCAA	60.747	61.111	0.30	0.00	42.17	4.08
1101	1130	2.443957	GAAGCCAACCGTTGTCGCTG	62.444	60.000	13.67	0.00	32.15	5.18
1534	1651	5.308237	CCAGGTTCTACTAGCCTAATCCAAT	59.692	44.000	0.00	0.00	36.50	3.16
1540	1657	3.912248	CCTCCAGGTTCTACTAGCCTAA	58.088	50.000	0.00	0.00	36.50	2.69
1608	1773	7.148641	AGCATAATCACTTCAGTATTCTACCG	58.851	38.462	0.00	0.00	0.00	4.02
1697	1885	5.662674	ATCTCTACAACTAACAGGACACC	57.337	43.478	0.00	0.00	0.00	4.16
1708	1896	8.478877	CAAATTAGGGAGTGTATCTCTACAACT	58.521	37.037	0.00	0.00	40.90	3.16
1817	2080	4.846779	TCAAAAACCAGTCAAGCATACC	57.153	40.909	0.00	0.00	0.00	2.73
1828	2091	7.447374	TGTAATACAGGACATCAAAAACCAG	57.553	36.000	0.00	0.00	0.00	4.00
1960	2322	6.825213	TGATACAGAGGGAGTTCAATTCATTG	59.175	38.462	0.00	0.00	39.10	2.82
1977	2339	9.905713	AGCAAAGGTCTTATATTTTGATACAGA	57.094	29.630	0.43	0.00	33.50	3.41
1978	2340	9.941664	CAGCAAAGGTCTTATATTTTGATACAG	57.058	33.333	0.43	0.00	33.50	2.74
1980	2342	9.937175	GTCAGCAAAGGTCTTATATTTTGATAC	57.063	33.333	0.43	0.00	33.50	2.24
1984	2346	7.820648	AGTGTCAGCAAAGGTCTTATATTTTG	58.179	34.615	0.00	0.00	34.51	2.44
1985	2347	9.515226	TTAGTGTCAGCAAAGGTCTTATATTTT	57.485	29.630	0.00	0.00	0.00	1.82
2014	2412	9.213777	ACTCCCTCTGTATCAAAATATAAGACA	57.786	33.333	0.00	0.00	0.00	3.41
2099	2506	6.845758	TCAAAATGAGCAAGGAAATCAGAT	57.154	33.333	0.00	0.00	0.00	2.90
2197	2607	3.259064	GACATGCCTACGAAACAAGCTA	58.741	45.455	0.00	0.00	0.00	3.32
2214	2624	5.882557	AGATCATTTCTTAAACCTGCGACAT	59.117	36.000	0.00	0.00	0.00	3.06
2233	2643	9.842775	AATTCATAGACATGAGCTAAAAGATCA	57.157	29.630	0.00	0.00	45.43	2.92
2246	2656	7.602753	TCGGAGGTATACAATTCATAGACATG	58.397	38.462	5.01	0.00	0.00	3.21
2276	2686	6.574350	AGCATTAAGGTACACACTAGATGAC	58.426	40.000	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.