Multiple sequence alignment - TraesCS5D01G175500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G175500 chr5D 100.000 3398 0 0 1 3398 275194096 275197493 0.000000e+00 6276
1 TraesCS5D01G175500 chr5D 87.192 1015 110 12 1181 2182 275147027 275148034 0.000000e+00 1136
2 TraesCS5D01G175500 chr5D 96.454 564 16 3 2178 2738 58020291 58020853 0.000000e+00 928
3 TraesCS5D01G175500 chr5D 82.979 987 143 18 1165 2140 274572469 274571497 0.000000e+00 869
4 TraesCS5D01G175500 chr5D 92.202 218 14 2 2730 2944 274778332 274778549 4.260000e-79 305
5 TraesCS5D01G175500 chr5D 86.102 295 22 6 2730 3005 275148024 275148318 1.980000e-77 300
6 TraesCS5D01G175500 chr5B 97.382 1146 30 0 1037 2182 312261059 312262204 0.000000e+00 1951
7 TraesCS5D01G175500 chr5B 93.953 1290 44 10 899 2182 310034664 310035925 0.000000e+00 1919
8 TraesCS5D01G175500 chr5B 86.660 1027 111 16 1172 2182 309817022 309818038 0.000000e+00 1114
9 TraesCS5D01G175500 chr5B 82.675 987 146 18 1165 2140 309665839 309664867 0.000000e+00 852
10 TraesCS5D01G175500 chr5B 97.590 332 6 1 2723 3054 312262189 312262518 4.920000e-158 568
11 TraesCS5D01G175500 chr5B 90.746 335 11 5 2723 3057 310035910 310036224 2.420000e-116 429
12 TraesCS5D01G175500 chr5B 94.397 232 12 1 634 864 310000685 310000916 4.170000e-94 355
13 TraesCS5D01G175500 chr5B 87.333 300 19 7 2730 3010 309818028 309818327 3.270000e-85 326
14 TraesCS5D01G175500 chr5B 92.481 133 10 0 402 534 310000557 310000689 1.240000e-44 191
15 TraesCS5D01G175500 chr5A 96.867 1149 33 1 1037 2182 364198507 364199655 0.000000e+00 1919
16 TraesCS5D01G175500 chr5A 86.550 1026 114 15 1172 2182 363919795 363920811 0.000000e+00 1109
17 TraesCS5D01G175500 chr5A 84.840 1029 111 22 1172 2182 363861961 363862962 0.000000e+00 994
18 TraesCS5D01G175500 chr5A 82.631 996 150 17 1155 2140 363598448 363597466 0.000000e+00 859
19 TraesCS5D01G175500 chr5A 89.749 439 23 10 2723 3151 364199640 364200066 2.980000e-150 542
20 TraesCS5D01G175500 chr5A 82.772 505 69 6 401 888 364197903 364198406 5.210000e-118 435
21 TraesCS5D01G175500 chr5A 85.424 295 24 5 2730 3005 363920801 363921095 4.290000e-74 289
22 TraesCS5D01G175500 chr5A 87.745 204 16 2 3203 3398 364200079 364200281 2.640000e-56 230
23 TraesCS5D01G175500 chr3D 98.736 554 5 1 2182 2733 91802953 91803506 0.000000e+00 983
24 TraesCS5D01G175500 chr3D 98.138 376 7 0 1 376 122655960 122655585 0.000000e+00 656
25 TraesCS5D01G175500 chr7D 98.007 552 9 1 2182 2731 525913638 525914189 0.000000e+00 957
26 TraesCS5D01G175500 chr7D 98.007 552 9 1 2181 2730 608122522 608121971 0.000000e+00 957
27 TraesCS5D01G175500 chr7D 97.122 556 11 5 2177 2730 457113338 457113890 0.000000e+00 933
28 TraesCS5D01G175500 chr7D 98.138 376 7 0 1 376 574260316 574260691 0.000000e+00 656
29 TraesCS5D01G175500 chr2D 97.658 555 9 3 2180 2732 544881403 544881955 0.000000e+00 950
30 TraesCS5D01G175500 chr2D 97.283 552 13 1 2181 2730 612544565 612544014 0.000000e+00 935
31 TraesCS5D01G175500 chr2D 98.138 376 7 0 1 376 462702850 462702475 0.000000e+00 656
32 TraesCS5D01G175500 chr1D 97.317 559 10 4 2182 2737 364840152 364839596 0.000000e+00 944
33 TraesCS5D01G175500 chr1D 97.096 551 14 1 2182 2730 410455289 410455839 0.000000e+00 928
34 TraesCS5D01G175500 chr1D 97.889 379 8 0 1 379 260896709 260896331 0.000000e+00 656
35 TraesCS5D01G175500 chr1D 98.133 375 7 0 1 375 295160430 295160804 0.000000e+00 654
36 TraesCS5D01G175500 chr1D 97.872 376 8 0 1 376 394970320 394969945 0.000000e+00 651
37 TraesCS5D01G175500 chrUn 97.872 376 8 0 1 376 286279613 286279988 0.000000e+00 651
38 TraesCS5D01G175500 chr6D 97.872 376 8 0 1 376 40886473 40886848 0.000000e+00 651
39 TraesCS5D01G175500 chr4D 97.872 376 8 0 1 376 301804116 301804491 0.000000e+00 651


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G175500 chr5D 275194096 275197493 3397 False 6276.0 6276 100.00000 1 3398 1 chr5D.!!$F3 3397
1 TraesCS5D01G175500 chr5D 58020291 58020853 562 False 928.0 928 96.45400 2178 2738 1 chr5D.!!$F1 560
2 TraesCS5D01G175500 chr5D 274571497 274572469 972 True 869.0 869 82.97900 1165 2140 1 chr5D.!!$R1 975
3 TraesCS5D01G175500 chr5D 275147027 275148318 1291 False 718.0 1136 86.64700 1181 3005 2 chr5D.!!$F4 1824
4 TraesCS5D01G175500 chr5B 312261059 312262518 1459 False 1259.5 1951 97.48600 1037 3054 2 chr5B.!!$F4 2017
5 TraesCS5D01G175500 chr5B 310034664 310036224 1560 False 1174.0 1919 92.34950 899 3057 2 chr5B.!!$F3 2158
6 TraesCS5D01G175500 chr5B 309664867 309665839 972 True 852.0 852 82.67500 1165 2140 1 chr5B.!!$R1 975
7 TraesCS5D01G175500 chr5B 309817022 309818327 1305 False 720.0 1114 86.99650 1172 3010 2 chr5B.!!$F1 1838
8 TraesCS5D01G175500 chr5A 363861961 363862962 1001 False 994.0 994 84.84000 1172 2182 1 chr5A.!!$F1 1010
9 TraesCS5D01G175500 chr5A 363597466 363598448 982 True 859.0 859 82.63100 1155 2140 1 chr5A.!!$R1 985
10 TraesCS5D01G175500 chr5A 364197903 364200281 2378 False 781.5 1919 89.28325 401 3398 4 chr5A.!!$F3 2997
11 TraesCS5D01G175500 chr5A 363919795 363921095 1300 False 699.0 1109 85.98700 1172 3005 2 chr5A.!!$F2 1833
12 TraesCS5D01G175500 chr3D 91802953 91803506 553 False 983.0 983 98.73600 2182 2733 1 chr3D.!!$F1 551
13 TraesCS5D01G175500 chr7D 525913638 525914189 551 False 957.0 957 98.00700 2182 2731 1 chr7D.!!$F2 549
14 TraesCS5D01G175500 chr7D 608121971 608122522 551 True 957.0 957 98.00700 2181 2730 1 chr7D.!!$R1 549
15 TraesCS5D01G175500 chr7D 457113338 457113890 552 False 933.0 933 97.12200 2177 2730 1 chr7D.!!$F1 553
16 TraesCS5D01G175500 chr2D 544881403 544881955 552 False 950.0 950 97.65800 2180 2732 1 chr2D.!!$F1 552
17 TraesCS5D01G175500 chr2D 612544014 612544565 551 True 935.0 935 97.28300 2181 2730 1 chr2D.!!$R2 549
18 TraesCS5D01G175500 chr1D 364839596 364840152 556 True 944.0 944 97.31700 2182 2737 1 chr1D.!!$R2 555
19 TraesCS5D01G175500 chr1D 410455289 410455839 550 False 928.0 928 97.09600 2182 2730 1 chr1D.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.032217 CCTCTCCCTCTCTCCTTGCT 60.032 60.0 0.0 0.0 0.0 3.91 F
1027 1059 0.034896 AAGGTGAGCGGTGTGGTAAG 59.965 55.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1091 0.183014 TACGTTTGGTTTGGGCCAGA 59.817 50.0 6.23 0.0 40.01 3.86 R
2745 2827 0.036164 ATGAACAGCTTGCCGGTACA 59.964 50.0 1.90 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.895372 CCTACGGGATTGCCACGC 60.895 66.667 0.00 0.00 35.15 5.34
45 46 2.186903 CTACGGGATTGCCACGCT 59.813 61.111 0.00 0.00 35.15 5.07
46 47 1.883084 CTACGGGATTGCCACGCTC 60.883 63.158 0.00 0.00 35.15 5.03
47 48 3.379865 TACGGGATTGCCACGCTCC 62.380 63.158 0.00 0.00 35.15 4.70
48 49 4.473520 CGGGATTGCCACGCTCCT 62.474 66.667 0.00 0.00 35.15 3.69
49 50 2.044946 GGGATTGCCACGCTCCTT 60.045 61.111 0.00 0.00 35.15 3.36
50 51 2.115291 GGGATTGCCACGCTCCTTC 61.115 63.158 0.00 0.00 35.15 3.46
51 52 1.377202 GGATTGCCACGCTCCTTCA 60.377 57.895 0.00 0.00 0.00 3.02
52 53 0.749454 GGATTGCCACGCTCCTTCAT 60.749 55.000 0.00 0.00 0.00 2.57
53 54 0.659957 GATTGCCACGCTCCTTCATC 59.340 55.000 0.00 0.00 0.00 2.92
54 55 0.035152 ATTGCCACGCTCCTTCATCA 60.035 50.000 0.00 0.00 0.00 3.07
55 56 0.955428 TTGCCACGCTCCTTCATCAC 60.955 55.000 0.00 0.00 0.00 3.06
56 57 2.109126 GCCACGCTCCTTCATCACC 61.109 63.158 0.00 0.00 0.00 4.02
57 58 1.296392 CCACGCTCCTTCATCACCA 59.704 57.895 0.00 0.00 0.00 4.17
58 59 1.021390 CCACGCTCCTTCATCACCAC 61.021 60.000 0.00 0.00 0.00 4.16
59 60 1.021390 CACGCTCCTTCATCACCACC 61.021 60.000 0.00 0.00 0.00 4.61
60 61 1.296392 CGCTCCTTCATCACCACCA 59.704 57.895 0.00 0.00 0.00 4.17
61 62 0.107508 CGCTCCTTCATCACCACCAT 60.108 55.000 0.00 0.00 0.00 3.55
62 63 1.386533 GCTCCTTCATCACCACCATG 58.613 55.000 0.00 0.00 0.00 3.66
63 64 1.386533 CTCCTTCATCACCACCATGC 58.613 55.000 0.00 0.00 0.00 4.06
64 65 0.034186 TCCTTCATCACCACCATGCC 60.034 55.000 0.00 0.00 0.00 4.40
65 66 1.378882 CCTTCATCACCACCATGCCG 61.379 60.000 0.00 0.00 0.00 5.69
66 67 0.677731 CTTCATCACCACCATGCCGT 60.678 55.000 0.00 0.00 0.00 5.68
67 68 0.676466 TTCATCACCACCATGCCGTC 60.676 55.000 0.00 0.00 0.00 4.79
68 69 2.125147 ATCACCACCATGCCGTCG 60.125 61.111 0.00 0.00 0.00 5.12
69 70 2.954684 ATCACCACCATGCCGTCGT 61.955 57.895 0.00 0.00 0.00 4.34
70 71 3.422303 CACCACCATGCCGTCGTG 61.422 66.667 0.00 0.00 0.00 4.35
73 74 3.792047 CACCATGCCGTCGTGCTG 61.792 66.667 7.14 3.84 0.00 4.41
76 77 4.156622 CATGCCGTCGTGCTGCTG 62.157 66.667 0.00 0.00 0.00 4.41
82 83 2.435586 GTCGTGCTGCTGCTGGAT 60.436 61.111 17.00 0.00 40.48 3.41
83 84 2.435410 TCGTGCTGCTGCTGGATG 60.435 61.111 17.00 12.82 40.48 3.51
84 85 3.506096 CGTGCTGCTGCTGGATGG 61.506 66.667 17.00 0.99 40.48 3.51
85 86 2.045634 GTGCTGCTGCTGGATGGA 60.046 61.111 17.00 0.00 40.48 3.41
86 87 2.113433 GTGCTGCTGCTGGATGGAG 61.113 63.158 17.00 0.00 40.48 3.86
87 88 2.271497 GCTGCTGCTGGATGGAGT 59.729 61.111 8.53 0.00 36.43 3.85
88 89 1.818785 GCTGCTGCTGGATGGAGTC 60.819 63.158 8.53 0.00 36.43 3.36
89 90 1.906253 CTGCTGCTGGATGGAGTCT 59.094 57.895 0.00 0.00 36.43 3.24
90 91 0.252479 CTGCTGCTGGATGGAGTCTT 59.748 55.000 0.00 0.00 36.43 3.01
91 92 0.251354 TGCTGCTGGATGGAGTCTTC 59.749 55.000 0.00 0.00 36.43 2.87
92 93 0.463474 GCTGCTGGATGGAGTCTTCC 60.463 60.000 5.90 5.90 44.31 3.46
93 94 0.179936 CTGCTGGATGGAGTCTTCCC 59.820 60.000 9.34 0.63 43.33 3.97
94 95 1.274703 TGCTGGATGGAGTCTTCCCC 61.275 60.000 9.34 3.24 43.33 4.81
95 96 1.274703 GCTGGATGGAGTCTTCCCCA 61.275 60.000 9.34 0.00 43.33 4.96
96 97 1.289160 CTGGATGGAGTCTTCCCCAA 58.711 55.000 9.34 0.00 43.33 4.12
97 98 0.991920 TGGATGGAGTCTTCCCCAAC 59.008 55.000 9.34 0.00 43.33 3.77
98 99 0.256177 GGATGGAGTCTTCCCCAACC 59.744 60.000 0.00 0.00 43.33 3.77
99 100 1.290134 GATGGAGTCTTCCCCAACCT 58.710 55.000 0.00 0.00 43.33 3.50
100 101 1.210722 GATGGAGTCTTCCCCAACCTC 59.789 57.143 0.00 0.00 43.33 3.85
101 102 0.193574 TGGAGTCTTCCCCAACCTCT 59.806 55.000 0.00 0.00 43.33 3.69
102 103 0.906066 GGAGTCTTCCCCAACCTCTC 59.094 60.000 0.00 0.00 37.53 3.20
103 104 0.906066 GAGTCTTCCCCAACCTCTCC 59.094 60.000 0.00 0.00 0.00 3.71
104 105 0.547954 AGTCTTCCCCAACCTCTCCC 60.548 60.000 0.00 0.00 0.00 4.30
105 106 0.547954 GTCTTCCCCAACCTCTCCCT 60.548 60.000 0.00 0.00 0.00 4.20
106 107 0.252742 TCTTCCCCAACCTCTCCCTC 60.253 60.000 0.00 0.00 0.00 4.30
107 108 0.252927 CTTCCCCAACCTCTCCCTCT 60.253 60.000 0.00 0.00 0.00 3.69
108 109 0.252742 TTCCCCAACCTCTCCCTCTC 60.253 60.000 0.00 0.00 0.00 3.20
109 110 1.156322 TCCCCAACCTCTCCCTCTCT 61.156 60.000 0.00 0.00 0.00 3.10
110 111 0.689412 CCCCAACCTCTCCCTCTCTC 60.689 65.000 0.00 0.00 0.00 3.20
111 112 0.689412 CCCAACCTCTCCCTCTCTCC 60.689 65.000 0.00 0.00 0.00 3.71
112 113 0.338120 CCAACCTCTCCCTCTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
113 114 1.273552 CCAACCTCTCCCTCTCTCCTT 60.274 57.143 0.00 0.00 0.00 3.36
114 115 1.830477 CAACCTCTCCCTCTCTCCTTG 59.170 57.143 0.00 0.00 0.00 3.61
115 116 0.325203 ACCTCTCCCTCTCTCCTTGC 60.325 60.000 0.00 0.00 0.00 4.01
116 117 0.032217 CCTCTCCCTCTCTCCTTGCT 60.032 60.000 0.00 0.00 0.00 3.91
117 118 1.113788 CTCTCCCTCTCTCCTTGCTG 58.886 60.000 0.00 0.00 0.00 4.41
118 119 0.325110 TCTCCCTCTCTCCTTGCTGG 60.325 60.000 0.00 0.00 37.10 4.85
119 120 0.325110 CTCCCTCTCTCCTTGCTGGA 60.325 60.000 0.00 0.00 43.86 3.86
120 121 0.341258 TCCCTCTCTCCTTGCTGGAT 59.659 55.000 0.00 0.00 45.16 3.41
121 122 0.758123 CCCTCTCTCCTTGCTGGATC 59.242 60.000 0.00 0.00 45.16 3.36
122 123 1.493861 CCTCTCTCCTTGCTGGATCA 58.506 55.000 0.00 0.00 45.16 2.92
123 124 1.836166 CCTCTCTCCTTGCTGGATCAA 59.164 52.381 0.00 0.00 45.16 2.57
124 125 2.158928 CCTCTCTCCTTGCTGGATCAAG 60.159 54.545 0.00 0.00 45.16 3.02
128 129 4.308526 CTTGCTGGATCAAGGCGT 57.691 55.556 0.00 0.00 39.68 5.68
129 130 1.798735 CTTGCTGGATCAAGGCGTG 59.201 57.895 0.00 0.00 39.68 5.34
130 131 1.651240 CTTGCTGGATCAAGGCGTGG 61.651 60.000 0.00 0.00 39.68 4.94
131 132 2.825836 GCTGGATCAAGGCGTGGG 60.826 66.667 0.00 0.00 0.00 4.61
132 133 2.989639 CTGGATCAAGGCGTGGGA 59.010 61.111 0.00 0.00 0.00 4.37
133 134 1.153289 CTGGATCAAGGCGTGGGAG 60.153 63.158 0.00 0.00 0.00 4.30
134 135 1.612146 TGGATCAAGGCGTGGGAGA 60.612 57.895 0.00 0.00 0.00 3.71
135 136 1.153349 GGATCAAGGCGTGGGAGAC 60.153 63.158 0.00 0.00 0.00 3.36
143 144 4.415332 CGTGGGAGACGTCACCGG 62.415 72.222 23.22 12.66 43.50 5.28
144 145 4.065281 GTGGGAGACGTCACCGGG 62.065 72.222 23.22 0.00 38.78 5.73
147 148 4.436998 GGAGACGTCACCGGGCTG 62.437 72.222 19.50 0.00 38.78 4.85
158 159 4.312231 CGGGCTGCACGTGTGTTG 62.312 66.667 17.53 6.17 0.00 3.33
159 160 2.899838 GGGCTGCACGTGTGTTGA 60.900 61.111 18.38 0.00 0.00 3.18
160 161 2.477176 GGGCTGCACGTGTGTTGAA 61.477 57.895 18.38 0.00 0.00 2.69
161 162 1.298339 GGCTGCACGTGTGTTGAAC 60.298 57.895 18.38 0.00 0.00 3.18
162 163 1.651132 GCTGCACGTGTGTTGAACG 60.651 57.895 18.38 0.00 46.32 3.95
163 164 1.651132 CTGCACGTGTGTTGAACGC 60.651 57.895 18.38 1.20 44.80 4.84
168 169 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
169 170 2.970324 TGTGTTGAACGCGGAGGC 60.970 61.111 12.47 0.00 0.00 4.70
189 190 2.126228 CGTGGTTCGGCGCTTAGA 60.126 61.111 7.64 1.45 35.71 2.10
190 191 1.518572 CGTGGTTCGGCGCTTAGAT 60.519 57.895 7.64 0.00 35.71 1.98
191 192 1.480219 CGTGGTTCGGCGCTTAGATC 61.480 60.000 7.64 4.10 35.71 2.75
192 193 1.226859 TGGTTCGGCGCTTAGATCG 60.227 57.895 7.64 0.17 0.00 3.69
193 194 1.949631 GGTTCGGCGCTTAGATCGG 60.950 63.158 7.64 0.00 0.00 4.18
194 195 1.065273 GTTCGGCGCTTAGATCGGA 59.935 57.895 7.64 0.00 0.00 4.55
195 196 0.526954 GTTCGGCGCTTAGATCGGAA 60.527 55.000 7.64 0.00 0.00 4.30
196 197 0.526954 TTCGGCGCTTAGATCGGAAC 60.527 55.000 7.64 0.00 0.00 3.62
197 198 1.065928 CGGCGCTTAGATCGGAACT 59.934 57.895 7.64 0.00 0.00 3.01
198 199 0.309922 CGGCGCTTAGATCGGAACTA 59.690 55.000 7.64 0.00 0.00 2.24
199 200 1.268896 CGGCGCTTAGATCGGAACTAA 60.269 52.381 7.64 7.41 0.00 2.24
200 201 2.125685 GGCGCTTAGATCGGAACTAAC 58.874 52.381 7.64 2.03 0.00 2.34
201 202 2.125685 GCGCTTAGATCGGAACTAACC 58.874 52.381 0.00 0.00 0.00 2.85
209 210 2.578369 CGGAACTAACCGCGATCTG 58.422 57.895 8.23 0.00 46.20 2.90
210 211 0.099968 CGGAACTAACCGCGATCTGA 59.900 55.000 8.23 0.00 46.20 3.27
211 212 1.468565 CGGAACTAACCGCGATCTGAA 60.469 52.381 8.23 0.00 46.20 3.02
212 213 2.798499 CGGAACTAACCGCGATCTGAAT 60.798 50.000 8.23 0.00 46.20 2.57
213 214 2.795470 GGAACTAACCGCGATCTGAATC 59.205 50.000 8.23 0.00 0.00 2.52
225 226 3.471495 GATCTGAATCGCTACGAGTACG 58.529 50.000 0.00 0.00 39.91 3.67
226 227 2.543641 TCTGAATCGCTACGAGTACGA 58.456 47.619 0.00 9.16 39.91 3.43
227 228 2.283617 TCTGAATCGCTACGAGTACGAC 59.716 50.000 0.00 0.00 39.91 4.34
228 229 2.274437 TGAATCGCTACGAGTACGACT 58.726 47.619 0.00 0.00 39.91 4.18
229 230 2.283617 TGAATCGCTACGAGTACGACTC 59.716 50.000 0.00 0.00 39.91 3.36
230 231 1.216122 ATCGCTACGAGTACGACTCC 58.784 55.000 8.73 0.00 42.12 3.85
231 232 0.807667 TCGCTACGAGTACGACTCCC 60.808 60.000 8.73 0.00 42.12 4.30
232 233 0.809241 CGCTACGAGTACGACTCCCT 60.809 60.000 8.73 0.00 42.12 4.20
233 234 0.936600 GCTACGAGTACGACTCCCTC 59.063 60.000 8.73 0.00 42.12 4.30
234 235 1.741732 GCTACGAGTACGACTCCCTCA 60.742 57.143 8.73 0.00 42.12 3.86
235 236 2.836262 CTACGAGTACGACTCCCTCAT 58.164 52.381 8.73 0.00 42.12 2.90
236 237 1.666054 ACGAGTACGACTCCCTCATC 58.334 55.000 8.73 0.00 42.12 2.92
237 238 0.945813 CGAGTACGACTCCCTCATCC 59.054 60.000 8.73 0.00 42.12 3.51
238 239 0.945813 GAGTACGACTCCCTCATCCG 59.054 60.000 0.00 0.00 39.28 4.18
239 240 1.102222 AGTACGACTCCCTCATCCGC 61.102 60.000 0.00 0.00 0.00 5.54
240 241 2.184830 TACGACTCCCTCATCCGCG 61.185 63.158 0.00 0.00 0.00 6.46
241 242 2.881539 TACGACTCCCTCATCCGCGT 62.882 60.000 4.92 0.00 0.00 6.01
242 243 2.893398 GACTCCCTCATCCGCGTT 59.107 61.111 4.92 0.00 0.00 4.84
243 244 1.227002 GACTCCCTCATCCGCGTTC 60.227 63.158 4.92 0.00 0.00 3.95
244 245 1.668101 GACTCCCTCATCCGCGTTCT 61.668 60.000 4.92 0.00 0.00 3.01
245 246 1.258445 ACTCCCTCATCCGCGTTCTT 61.258 55.000 4.92 0.00 0.00 2.52
246 247 0.807667 CTCCCTCATCCGCGTTCTTG 60.808 60.000 4.92 0.00 0.00 3.02
247 248 2.464459 CCCTCATCCGCGTTCTTGC 61.464 63.158 4.92 0.00 0.00 4.01
248 249 1.741401 CCTCATCCGCGTTCTTGCA 60.741 57.895 4.92 0.00 34.15 4.08
249 250 1.298157 CCTCATCCGCGTTCTTGCAA 61.298 55.000 4.92 0.00 34.15 4.08
250 251 0.179215 CTCATCCGCGTTCTTGCAAC 60.179 55.000 4.92 0.00 34.15 4.17
251 252 1.509787 CATCCGCGTTCTTGCAACG 60.510 57.895 4.92 5.06 45.56 4.10
256 257 4.515107 CGTTCTTGCAACGCTTCC 57.485 55.556 0.00 0.00 36.82 3.46
257 258 1.438710 CGTTCTTGCAACGCTTCCG 60.439 57.895 0.00 0.00 36.82 4.30
258 259 1.725973 GTTCTTGCAACGCTTCCGC 60.726 57.895 0.00 0.00 38.22 5.54
259 260 2.183504 TTCTTGCAACGCTTCCGCA 61.184 52.632 0.00 0.00 38.22 5.69
260 261 1.514678 TTCTTGCAACGCTTCCGCAT 61.515 50.000 0.00 0.00 38.22 4.73
261 262 1.512734 CTTGCAACGCTTCCGCATC 60.513 57.895 0.00 0.00 38.22 3.91
262 263 3.307505 TTGCAACGCTTCCGCATCG 62.308 57.895 0.00 0.00 38.22 3.84
276 277 1.502231 GCATCGCGATCTACAATGGT 58.498 50.000 20.85 0.00 0.00 3.55
277 278 2.672714 GCATCGCGATCTACAATGGTA 58.327 47.619 20.85 0.00 0.00 3.25
278 279 3.254060 GCATCGCGATCTACAATGGTAT 58.746 45.455 20.85 0.00 0.00 2.73
279 280 3.061295 GCATCGCGATCTACAATGGTATG 59.939 47.826 20.85 5.84 0.00 2.39
280 281 4.237724 CATCGCGATCTACAATGGTATGT 58.762 43.478 20.85 0.00 37.32 2.29
281 282 5.399013 CATCGCGATCTACAATGGTATGTA 58.601 41.667 20.85 0.00 34.75 2.29
291 292 4.708177 ACAATGGTATGTAGATGCACTCC 58.292 43.478 0.00 0.00 0.00 3.85
292 293 4.067896 CAATGGTATGTAGATGCACTCCC 58.932 47.826 0.00 0.00 0.00 4.30
293 294 2.047061 TGGTATGTAGATGCACTCCCC 58.953 52.381 0.00 0.00 0.00 4.81
294 295 2.330216 GGTATGTAGATGCACTCCCCT 58.670 52.381 0.00 0.00 0.00 4.79
295 296 2.706190 GGTATGTAGATGCACTCCCCTT 59.294 50.000 0.00 0.00 0.00 3.95
296 297 3.244249 GGTATGTAGATGCACTCCCCTTC 60.244 52.174 0.00 0.00 0.00 3.46
297 298 1.204146 TGTAGATGCACTCCCCTTCC 58.796 55.000 0.00 0.00 0.00 3.46
298 299 0.470341 GTAGATGCACTCCCCTTCCC 59.530 60.000 0.00 0.00 0.00 3.97
299 300 0.694444 TAGATGCACTCCCCTTCCCC 60.694 60.000 0.00 0.00 0.00 4.81
300 301 2.003548 GATGCACTCCCCTTCCCCT 61.004 63.158 0.00 0.00 0.00 4.79
301 302 1.988982 GATGCACTCCCCTTCCCCTC 61.989 65.000 0.00 0.00 0.00 4.30
302 303 3.787001 GCACTCCCCTTCCCCTCG 61.787 72.222 0.00 0.00 0.00 4.63
303 304 2.284699 CACTCCCCTTCCCCTCGT 60.285 66.667 0.00 0.00 0.00 4.18
304 305 1.918800 CACTCCCCTTCCCCTCGTT 60.919 63.158 0.00 0.00 0.00 3.85
305 306 1.918800 ACTCCCCTTCCCCTCGTTG 60.919 63.158 0.00 0.00 0.00 4.10
306 307 3.327404 TCCCCTTCCCCTCGTTGC 61.327 66.667 0.00 0.00 0.00 4.17
307 308 3.330720 CCCCTTCCCCTCGTTGCT 61.331 66.667 0.00 0.00 0.00 3.91
308 309 1.993391 CCCCTTCCCCTCGTTGCTA 60.993 63.158 0.00 0.00 0.00 3.49
309 310 1.522569 CCCTTCCCCTCGTTGCTAG 59.477 63.158 0.00 0.00 0.00 3.42
310 311 0.976073 CCCTTCCCCTCGTTGCTAGA 60.976 60.000 0.00 0.00 0.00 2.43
311 312 1.123928 CCTTCCCCTCGTTGCTAGAT 58.876 55.000 0.00 0.00 0.00 1.98
312 313 1.486726 CCTTCCCCTCGTTGCTAGATT 59.513 52.381 0.00 0.00 0.00 2.40
313 314 2.698797 CCTTCCCCTCGTTGCTAGATTA 59.301 50.000 0.00 0.00 0.00 1.75
314 315 3.492829 CCTTCCCCTCGTTGCTAGATTAC 60.493 52.174 0.00 0.00 0.00 1.89
315 316 3.028094 TCCCCTCGTTGCTAGATTACT 57.972 47.619 0.00 0.00 0.00 2.24
316 317 2.957006 TCCCCTCGTTGCTAGATTACTC 59.043 50.000 0.00 0.00 0.00 2.59
317 318 2.036089 CCCCTCGTTGCTAGATTACTCC 59.964 54.545 0.00 0.00 0.00 3.85
318 319 2.693591 CCCTCGTTGCTAGATTACTCCA 59.306 50.000 0.00 0.00 0.00 3.86
319 320 3.322254 CCCTCGTTGCTAGATTACTCCAT 59.678 47.826 0.00 0.00 0.00 3.41
320 321 4.523173 CCCTCGTTGCTAGATTACTCCATA 59.477 45.833 0.00 0.00 0.00 2.74
321 322 5.336055 CCCTCGTTGCTAGATTACTCCATAG 60.336 48.000 0.00 0.00 0.00 2.23
322 323 5.473846 CCTCGTTGCTAGATTACTCCATAGA 59.526 44.000 0.00 0.00 0.00 1.98
323 324 6.151985 CCTCGTTGCTAGATTACTCCATAGAT 59.848 42.308 0.00 0.00 0.00 1.98
324 325 7.309499 CCTCGTTGCTAGATTACTCCATAGATT 60.309 40.741 0.00 0.00 0.00 2.40
325 326 7.371159 TCGTTGCTAGATTACTCCATAGATTG 58.629 38.462 0.00 0.00 0.00 2.67
326 327 7.230712 TCGTTGCTAGATTACTCCATAGATTGA 59.769 37.037 0.00 0.00 0.00 2.57
327 328 8.031864 CGTTGCTAGATTACTCCATAGATTGAT 58.968 37.037 0.00 0.00 0.00 2.57
328 329 9.364989 GTTGCTAGATTACTCCATAGATTGATC 57.635 37.037 0.00 0.00 0.00 2.92
329 330 8.891985 TGCTAGATTACTCCATAGATTGATCT 57.108 34.615 0.00 0.00 40.86 2.75
330 331 9.319060 TGCTAGATTACTCCATAGATTGATCTT 57.681 33.333 0.00 0.00 38.32 2.40
331 332 9.585099 GCTAGATTACTCCATAGATTGATCTTG 57.415 37.037 0.00 0.00 38.32 3.02
332 333 9.585099 CTAGATTACTCCATAGATTGATCTTGC 57.415 37.037 0.00 0.00 38.32 4.01
333 334 8.204903 AGATTACTCCATAGATTGATCTTGCT 57.795 34.615 0.00 0.00 38.32 3.91
334 335 8.095792 AGATTACTCCATAGATTGATCTTGCTG 58.904 37.037 0.00 0.00 38.32 4.41
335 336 5.883685 ACTCCATAGATTGATCTTGCTGA 57.116 39.130 0.00 0.00 38.32 4.26
336 337 6.436738 ACTCCATAGATTGATCTTGCTGAT 57.563 37.500 0.00 0.00 38.32 2.90
337 338 6.231951 ACTCCATAGATTGATCTTGCTGATG 58.768 40.000 0.00 0.00 38.32 3.07
338 339 5.001874 TCCATAGATTGATCTTGCTGATGC 58.998 41.667 0.00 0.00 38.32 3.91
339 340 4.142881 CCATAGATTGATCTTGCTGATGCG 60.143 45.833 0.00 0.00 39.04 4.73
340 341 2.915349 AGATTGATCTTGCTGATGCGT 58.085 42.857 0.00 0.00 43.34 5.24
341 342 4.063998 AGATTGATCTTGCTGATGCGTA 57.936 40.909 0.00 0.00 43.34 4.42
342 343 4.056740 AGATTGATCTTGCTGATGCGTAG 58.943 43.478 0.00 0.00 43.34 3.51
343 344 3.525268 TTGATCTTGCTGATGCGTAGA 57.475 42.857 0.00 0.00 43.34 2.59
344 345 3.525268 TGATCTTGCTGATGCGTAGAA 57.475 42.857 0.00 0.00 43.34 2.10
345 346 3.860641 TGATCTTGCTGATGCGTAGAAA 58.139 40.909 0.00 0.00 43.34 2.52
346 347 4.252878 TGATCTTGCTGATGCGTAGAAAA 58.747 39.130 0.00 0.00 43.34 2.29
347 348 4.877823 TGATCTTGCTGATGCGTAGAAAAT 59.122 37.500 0.00 0.00 43.34 1.82
348 349 5.355071 TGATCTTGCTGATGCGTAGAAAATT 59.645 36.000 0.00 0.00 43.34 1.82
349 350 5.627499 TCTTGCTGATGCGTAGAAAATTT 57.373 34.783 0.00 0.00 43.34 1.82
350 351 6.012658 TCTTGCTGATGCGTAGAAAATTTT 57.987 33.333 2.28 2.28 43.34 1.82
351 352 5.858049 TCTTGCTGATGCGTAGAAAATTTTG 59.142 36.000 8.47 0.00 43.34 2.44
352 353 5.369685 TGCTGATGCGTAGAAAATTTTGA 57.630 34.783 8.47 0.00 43.34 2.69
353 354 5.767269 TGCTGATGCGTAGAAAATTTTGAA 58.233 33.333 8.47 0.00 43.34 2.69
354 355 6.389091 TGCTGATGCGTAGAAAATTTTGAAT 58.611 32.000 8.47 0.00 43.34 2.57
355 356 6.867816 TGCTGATGCGTAGAAAATTTTGAATT 59.132 30.769 8.47 0.00 43.34 2.17
356 357 7.384660 TGCTGATGCGTAGAAAATTTTGAATTT 59.615 29.630 8.47 0.00 43.34 1.82
357 358 7.894753 GCTGATGCGTAGAAAATTTTGAATTTC 59.105 33.333 8.47 0.00 36.11 2.17
358 359 9.132521 CTGATGCGTAGAAAATTTTGAATTTCT 57.867 29.630 8.47 0.48 45.29 2.52
359 360 8.914654 TGATGCGTAGAAAATTTTGAATTTCTG 58.085 29.630 8.47 0.00 43.67 3.02
360 361 7.104326 TGCGTAGAAAATTTTGAATTTCTGC 57.896 32.000 8.47 8.21 43.67 4.26
361 362 6.922957 TGCGTAGAAAATTTTGAATTTCTGCT 59.077 30.769 8.47 0.00 43.67 4.24
362 363 8.079203 TGCGTAGAAAATTTTGAATTTCTGCTA 58.921 29.630 8.47 0.00 43.67 3.49
363 364 8.365938 GCGTAGAAAATTTTGAATTTCTGCTAC 58.634 33.333 8.47 8.90 43.67 3.58
364 365 8.567221 CGTAGAAAATTTTGAATTTCTGCTACG 58.433 33.333 22.91 22.91 43.67 3.51
365 366 9.394477 GTAGAAAATTTTGAATTTCTGCTACGT 57.606 29.630 8.47 0.00 43.67 3.57
366 367 8.871686 AGAAAATTTTGAATTTCTGCTACGTT 57.128 26.923 8.47 0.00 42.62 3.99
367 368 8.968242 AGAAAATTTTGAATTTCTGCTACGTTC 58.032 29.630 8.47 0.00 42.62 3.95
368 369 7.637709 AAATTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
369 370 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
370 371 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
371 372 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
372 373 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
373 374 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
374 375 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
375 376 0.320374 TCTGCTACGTTCCCCAACAG 59.680 55.000 0.00 0.00 32.14 3.16
376 377 1.298859 CTGCTACGTTCCCCAACAGC 61.299 60.000 0.00 0.00 33.86 4.40
377 378 2.038837 GCTACGTTCCCCAACAGCC 61.039 63.158 0.00 0.00 29.20 4.85
378 379 1.740296 CTACGTTCCCCAACAGCCG 60.740 63.158 0.00 0.00 32.14 5.52
379 380 3.887335 TACGTTCCCCAACAGCCGC 62.887 63.158 0.00 0.00 32.14 6.53
381 382 4.660938 GTTCCCCAACAGCCGCCT 62.661 66.667 0.00 0.00 32.14 5.52
382 383 4.344865 TTCCCCAACAGCCGCCTC 62.345 66.667 0.00 0.00 0.00 4.70
394 395 3.399181 CGCCTCAGCCCCAACCTA 61.399 66.667 0.00 0.00 34.57 3.08
395 396 2.592308 GCCTCAGCCCCAACCTAG 59.408 66.667 0.00 0.00 0.00 3.02
396 397 1.995626 GCCTCAGCCCCAACCTAGA 60.996 63.158 0.00 0.00 0.00 2.43
397 398 1.977293 GCCTCAGCCCCAACCTAGAG 61.977 65.000 0.00 0.00 0.00 2.43
398 399 0.325671 CCTCAGCCCCAACCTAGAGA 60.326 60.000 0.00 0.00 0.00 3.10
399 400 1.694048 CCTCAGCCCCAACCTAGAGAT 60.694 57.143 0.00 0.00 0.00 2.75
426 427 4.773117 GGGTGCTCGTCGACGTCC 62.773 72.222 34.40 28.08 40.80 4.79
455 456 2.360726 TGCTACGACCTCTCGCCA 60.361 61.111 0.00 0.00 44.33 5.69
457 458 1.320344 TGCTACGACCTCTCGCCAAT 61.320 55.000 0.00 0.00 44.33 3.16
461 462 1.298713 CGACCTCTCGCCAATCTCG 60.299 63.158 0.00 0.00 31.91 4.04
465 466 1.715862 CCTCTCGCCAATCTCGTCGA 61.716 60.000 0.00 0.00 0.00 4.20
517 518 2.515996 GAAGCCCGAATGGTGTCCGA 62.516 60.000 0.00 0.00 36.04 4.55
520 521 1.004320 CCCGAATGGTGTCCGACAA 60.004 57.895 1.88 0.00 0.00 3.18
528 529 3.491581 GTGTCCGACAACACGAGAT 57.508 52.632 1.88 0.00 40.09 2.75
530 531 3.146618 GTGTCCGACAACACGAGATAT 57.853 47.619 1.88 0.00 40.09 1.63
536 537 2.803133 CGACAACACGAGATATGGGCAT 60.803 50.000 0.00 0.00 35.09 4.40
537 538 2.802816 GACAACACGAGATATGGGCATC 59.197 50.000 0.00 0.00 0.00 3.91
539 540 0.319900 ACACGAGATATGGGCATCGC 60.320 55.000 0.00 0.00 38.71 4.58
551 552 3.630148 CATCGCCATGTCGCGGTC 61.630 66.667 14.96 0.00 43.50 4.79
564 565 3.507009 CGGTCGTCGGGAGAGGTC 61.507 72.222 0.00 0.00 44.57 3.85
571 572 3.147595 CGGGAGAGGTCGCCATCA 61.148 66.667 1.97 0.00 37.57 3.07
572 573 2.501610 GGGAGAGGTCGCCATCAC 59.498 66.667 1.97 0.00 37.57 3.06
574 575 2.105128 GAGAGGTCGCCATCACCG 59.895 66.667 0.00 0.00 39.13 4.94
575 576 3.432051 GAGAGGTCGCCATCACCGG 62.432 68.421 0.00 0.00 39.13 5.28
588 589 0.902531 TCACCGGAACCATCTCCTTC 59.097 55.000 9.46 0.00 32.82 3.46
595 596 2.501723 GGAACCATCTCCTTCTGTGCTA 59.498 50.000 0.00 0.00 32.21 3.49
597 598 3.834489 ACCATCTCCTTCTGTGCTATG 57.166 47.619 0.00 0.00 0.00 2.23
599 600 2.104451 CCATCTCCTTCTGTGCTATGCT 59.896 50.000 0.00 0.00 0.00 3.79
615 616 2.340210 TGCTATCTCACTCGCTCTCT 57.660 50.000 0.00 0.00 0.00 3.10
616 617 3.477210 TGCTATCTCACTCGCTCTCTA 57.523 47.619 0.00 0.00 0.00 2.43
626 627 2.885266 ACTCGCTCTCTACAAGTCAACA 59.115 45.455 0.00 0.00 0.00 3.33
633 634 3.971305 TCTCTACAAGTCAACAAAGGGGA 59.029 43.478 0.00 0.00 0.00 4.81
634 635 4.597507 TCTCTACAAGTCAACAAAGGGGAT 59.402 41.667 0.00 0.00 0.00 3.85
635 636 4.651778 TCTACAAGTCAACAAAGGGGATG 58.348 43.478 0.00 0.00 0.00 3.51
636 637 2.597455 ACAAGTCAACAAAGGGGATGG 58.403 47.619 0.00 0.00 0.00 3.51
637 638 1.895131 CAAGTCAACAAAGGGGATGGG 59.105 52.381 0.00 0.00 0.00 4.00
638 639 0.409484 AGTCAACAAAGGGGATGGGG 59.591 55.000 0.00 0.00 0.00 4.96
639 640 1.078347 TCAACAAAGGGGATGGGGC 59.922 57.895 0.00 0.00 0.00 5.80
641 642 2.543797 AACAAAGGGGATGGGGCGA 61.544 57.895 0.00 0.00 0.00 5.54
642 643 2.440247 CAAAGGGGATGGGGCGAC 60.440 66.667 0.00 0.00 0.00 5.19
643 644 2.938798 AAAGGGGATGGGGCGACA 60.939 61.111 0.00 0.00 0.00 4.35
678 683 0.782384 GTTTGTAGACAGTGGACGCG 59.218 55.000 3.53 3.53 0.00 6.01
707 712 2.409870 CGCCGGGTACGTTCCTAGT 61.410 63.158 11.29 0.00 38.78 2.57
718 723 0.108945 GTTCCTAGTGAACGGGTCGG 60.109 60.000 7.92 0.00 43.65 4.79
726 731 1.003223 GTGAACGGGTCGGTTTTTCTG 60.003 52.381 0.00 0.00 0.00 3.02
728 733 0.464916 AACGGGTCGGTTTTTCTGCT 60.465 50.000 0.00 0.00 0.00 4.24
758 763 7.170320 AGTGCATCAAGATTTGTGTTTTTGATC 59.830 33.333 0.00 0.00 36.61 2.92
767 772 1.067821 GTGTTTTTGATCCAACGGCCA 59.932 47.619 2.24 0.00 0.00 5.36
782 787 0.107654 GGCCATCAGGTAGTTCGCTT 60.108 55.000 0.00 0.00 37.19 4.68
795 800 5.410439 GGTAGTTCGCTTGGAATGTCTAAAA 59.590 40.000 0.00 0.00 36.92 1.52
797 802 6.575162 AGTTCGCTTGGAATGTCTAAAAAT 57.425 33.333 0.00 0.00 36.92 1.82
858 875 1.757682 ACCGCAACAAGAAGGTTTCA 58.242 45.000 0.00 0.00 32.17 2.69
871 888 8.257306 ACAAGAAGGTTTCAAAGAAATTAAGCA 58.743 29.630 0.00 0.00 0.00 3.91
872 889 8.758715 CAAGAAGGTTTCAAAGAAATTAAGCAG 58.241 33.333 0.00 0.00 0.00 4.24
873 890 8.237811 AGAAGGTTTCAAAGAAATTAAGCAGA 57.762 30.769 0.00 0.00 0.00 4.26
874 891 8.138074 AGAAGGTTTCAAAGAAATTAAGCAGAC 58.862 33.333 0.00 0.00 0.00 3.51
875 892 6.749139 AGGTTTCAAAGAAATTAAGCAGACC 58.251 36.000 0.00 0.00 0.00 3.85
876 893 6.323739 AGGTTTCAAAGAAATTAAGCAGACCA 59.676 34.615 0.00 0.00 0.00 4.02
877 894 7.015584 AGGTTTCAAAGAAATTAAGCAGACCAT 59.984 33.333 0.00 0.00 0.00 3.55
878 895 7.657354 GGTTTCAAAGAAATTAAGCAGACCATT 59.343 33.333 0.00 0.00 0.00 3.16
879 896 9.045223 GTTTCAAAGAAATTAAGCAGACCATTT 57.955 29.630 0.00 0.00 0.00 2.32
880 897 8.816640 TTCAAAGAAATTAAGCAGACCATTTC 57.183 30.769 0.00 0.00 36.34 2.17
881 898 7.083858 TCAAAGAAATTAAGCAGACCATTTCG 58.916 34.615 0.00 0.00 39.58 3.46
882 899 6.817765 AAGAAATTAAGCAGACCATTTCGA 57.182 33.333 0.00 0.00 39.58 3.71
883 900 6.817765 AGAAATTAAGCAGACCATTTCGAA 57.182 33.333 0.00 0.00 39.58 3.71
884 901 7.396540 AGAAATTAAGCAGACCATTTCGAAT 57.603 32.000 0.00 0.00 39.58 3.34
885 902 7.830739 AGAAATTAAGCAGACCATTTCGAATT 58.169 30.769 0.00 0.00 39.58 2.17
886 903 8.306761 AGAAATTAAGCAGACCATTTCGAATTT 58.693 29.630 0.00 0.00 39.58 1.82
887 904 8.466086 AAATTAAGCAGACCATTTCGAATTTC 57.534 30.769 0.00 0.00 0.00 2.17
888 905 6.817765 TTAAGCAGACCATTTCGAATTTCT 57.182 33.333 0.00 0.00 0.00 2.52
889 906 5.712152 AAGCAGACCATTTCGAATTTCTT 57.288 34.783 0.00 0.00 0.00 2.52
890 907 5.712152 AGCAGACCATTTCGAATTTCTTT 57.288 34.783 0.00 0.00 0.00 2.52
891 908 6.089249 AGCAGACCATTTCGAATTTCTTTT 57.911 33.333 0.00 0.00 0.00 2.27
892 909 6.515832 AGCAGACCATTTCGAATTTCTTTTT 58.484 32.000 0.00 0.00 0.00 1.94
926 943 6.646240 AGACCATTTCAAATTTCATGTTTCCG 59.354 34.615 0.00 0.00 0.00 4.30
954 979 3.164024 ACCCATGGTGACTGTCTGA 57.836 52.632 11.73 0.00 32.98 3.27
955 980 0.687354 ACCCATGGTGACTGTCTGAC 59.313 55.000 11.73 0.00 32.98 3.51
956 981 0.979665 CCCATGGTGACTGTCTGACT 59.020 55.000 11.73 0.00 0.00 3.41
957 982 1.338484 CCCATGGTGACTGTCTGACTG 60.338 57.143 11.73 12.43 0.00 3.51
958 983 1.620323 CCATGGTGACTGTCTGACTGA 59.380 52.381 19.67 0.00 0.00 3.41
959 984 2.611473 CCATGGTGACTGTCTGACTGAC 60.611 54.545 19.67 14.33 45.54 3.51
1027 1059 0.034896 AAGGTGAGCGGTGTGGTAAG 59.965 55.000 0.00 0.00 0.00 2.34
1044 1091 2.996168 AAGCGCGACTCTGCCAAAGT 62.996 55.000 12.10 0.00 0.00 2.66
1083 1133 1.371183 CTGCCTCCGTCCTTTCACA 59.629 57.895 0.00 0.00 0.00 3.58
1250 1305 3.132139 CTCGCCGACCTTCTCCGA 61.132 66.667 0.00 0.00 0.00 4.55
1708 1773 0.098025 CTCTGCTTCGAGGTCGTCTC 59.902 60.000 0.00 0.00 40.80 3.36
2209 2289 5.425217 TGAGATCCAGTGCCTTTATCAAGTA 59.575 40.000 0.00 0.00 0.00 2.24
2276 2358 3.427573 TCCTACGGTTCAGATCACAAGA 58.572 45.455 0.00 0.00 0.00 3.02
2305 2387 4.036852 GGCTCTCAACACTTAGCAGTTTTT 59.963 41.667 0.00 0.00 36.68 1.94
2735 2817 2.505628 CTGGATCTCAGTCCGACATG 57.494 55.000 0.40 0.00 41.35 3.21
2737 2819 3.273606 CTGGATCTCAGTCCGACATGGA 61.274 54.545 0.40 0.00 41.35 3.41
2834 2918 3.730761 GAGCGCCTGCACACCAAG 61.731 66.667 2.29 0.00 46.23 3.61
2982 3084 5.574188 ACCTTGTGCTTAATTCCTCAGATT 58.426 37.500 0.00 0.00 0.00 2.40
3071 3177 7.019774 CACATATGTGTCCATTTGTTCTAGG 57.980 40.000 24.91 0.00 40.05 3.02
3072 3178 6.823182 CACATATGTGTCCATTTGTTCTAGGA 59.177 38.462 24.91 0.00 40.05 2.94
3073 3179 7.500227 CACATATGTGTCCATTTGTTCTAGGAT 59.500 37.037 24.91 0.00 40.05 3.24
3074 3180 8.055181 ACATATGTGTCCATTTGTTCTAGGATT 58.945 33.333 7.78 0.00 39.33 3.01
3075 3181 8.906867 CATATGTGTCCATTTGTTCTAGGATTT 58.093 33.333 0.00 0.00 31.91 2.17
3076 3182 6.573664 TGTGTCCATTTGTTCTAGGATTTG 57.426 37.500 0.00 0.00 31.91 2.32
3077 3183 5.048083 TGTGTCCATTTGTTCTAGGATTTGC 60.048 40.000 0.00 0.00 31.91 3.68
3078 3184 5.048083 GTGTCCATTTGTTCTAGGATTTGCA 60.048 40.000 0.00 0.00 31.91 4.08
3096 3202 6.942532 TTTGCAAAGTTGATAGAAGTCACT 57.057 33.333 8.05 0.00 0.00 3.41
3144 3250 2.947652 TGCAGCAATCATTTCTCTAGGC 59.052 45.455 0.00 0.00 0.00 3.93
3151 3257 5.706369 GCAATCATTTCTCTAGGCATGAGAT 59.294 40.000 9.63 0.00 39.87 2.75
3152 3258 6.877855 GCAATCATTTCTCTAGGCATGAGATA 59.122 38.462 9.63 6.40 39.87 1.98
3153 3259 7.148440 GCAATCATTTCTCTAGGCATGAGATAC 60.148 40.741 9.63 0.00 39.87 2.24
3154 3260 7.795534 ATCATTTCTCTAGGCATGAGATACT 57.204 36.000 9.63 0.00 39.87 2.12
3155 3261 7.225784 TCATTTCTCTAGGCATGAGATACTC 57.774 40.000 9.63 0.00 39.87 2.59
3156 3262 6.210385 TCATTTCTCTAGGCATGAGATACTCC 59.790 42.308 9.63 0.00 39.87 3.85
3157 3263 4.040936 TCTCTAGGCATGAGATACTCCC 57.959 50.000 0.00 0.00 35.86 4.30
3158 3264 3.660177 TCTCTAGGCATGAGATACTCCCT 59.340 47.826 0.00 0.00 35.86 4.20
3160 3266 2.022718 AGGCATGAGATACTCCCTCC 57.977 55.000 0.00 0.00 0.00 4.30
3161 3267 0.605589 GGCATGAGATACTCCCTCCG 59.394 60.000 0.00 0.00 0.00 4.63
3162 3268 1.333177 GCATGAGATACTCCCTCCGT 58.667 55.000 0.00 0.00 0.00 4.69
3163 3269 1.271102 GCATGAGATACTCCCTCCGTC 59.729 57.143 0.00 0.00 0.00 4.79
3164 3270 1.889829 CATGAGATACTCCCTCCGTCC 59.110 57.143 0.00 0.00 0.00 4.79
3165 3271 0.185416 TGAGATACTCCCTCCGTCCC 59.815 60.000 0.00 0.00 0.00 4.46
3166 3272 0.185416 GAGATACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
3167 3273 0.861155 AGATACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3168 3274 2.041350 GAGATACTCCCTCCGTCCCATA 59.959 54.545 0.00 0.00 0.00 2.74
3169 3275 2.449730 AGATACTCCCTCCGTCCCATAA 59.550 50.000 0.00 0.00 0.00 1.90
3170 3276 3.077695 AGATACTCCCTCCGTCCCATAAT 59.922 47.826 0.00 0.00 0.00 1.28
3171 3277 4.294168 AGATACTCCCTCCGTCCCATAATA 59.706 45.833 0.00 0.00 0.00 0.98
3172 3278 3.339713 ACTCCCTCCGTCCCATAATAA 57.660 47.619 0.00 0.00 0.00 1.40
3173 3279 3.660959 ACTCCCTCCGTCCCATAATAAA 58.339 45.455 0.00 0.00 0.00 1.40
3174 3280 4.042174 ACTCCCTCCGTCCCATAATAAAA 58.958 43.478 0.00 0.00 0.00 1.52
3175 3281 4.141551 ACTCCCTCCGTCCCATAATAAAAC 60.142 45.833 0.00 0.00 0.00 2.43
3176 3282 3.781407 TCCCTCCGTCCCATAATAAAACA 59.219 43.478 0.00 0.00 0.00 2.83
3177 3283 3.881089 CCCTCCGTCCCATAATAAAACAC 59.119 47.826 0.00 0.00 0.00 3.32
3178 3284 4.384868 CCCTCCGTCCCATAATAAAACACT 60.385 45.833 0.00 0.00 0.00 3.55
3179 3285 4.814771 CCTCCGTCCCATAATAAAACACTC 59.185 45.833 0.00 0.00 0.00 3.51
3180 3286 5.396436 CCTCCGTCCCATAATAAAACACTCT 60.396 44.000 0.00 0.00 0.00 3.24
3181 3287 6.057321 TCCGTCCCATAATAAAACACTCTT 57.943 37.500 0.00 0.00 0.00 2.85
3182 3288 7.185318 TCCGTCCCATAATAAAACACTCTTA 57.815 36.000 0.00 0.00 0.00 2.10
3183 3289 7.043565 TCCGTCCCATAATAAAACACTCTTAC 58.956 38.462 0.00 0.00 0.00 2.34
3184 3290 6.819649 CCGTCCCATAATAAAACACTCTTACA 59.180 38.462 0.00 0.00 0.00 2.41
3185 3291 7.497909 CCGTCCCATAATAAAACACTCTTACAT 59.502 37.037 0.00 0.00 0.00 2.29
3186 3292 8.889717 CGTCCCATAATAAAACACTCTTACATT 58.110 33.333 0.00 0.00 0.00 2.71
3194 3300 6.737254 AAAACACTCTTACATTATGGGACG 57.263 37.500 0.00 0.00 0.00 4.79
3195 3301 5.416271 AACACTCTTACATTATGGGACGT 57.584 39.130 0.00 0.00 0.00 4.34
3196 3302 6.534475 AACACTCTTACATTATGGGACGTA 57.466 37.500 0.00 0.00 0.00 3.57
3197 3303 6.145338 ACACTCTTACATTATGGGACGTAG 57.855 41.667 0.00 0.00 0.00 3.51
3198 3304 5.068723 ACACTCTTACATTATGGGACGTAGG 59.931 44.000 0.00 0.00 0.00 3.18
3199 3305 4.587684 ACTCTTACATTATGGGACGTAGGG 59.412 45.833 0.00 0.00 0.00 3.53
3200 3306 4.806892 TCTTACATTATGGGACGTAGGGA 58.193 43.478 0.00 0.00 0.00 4.20
3201 3307 4.831155 TCTTACATTATGGGACGTAGGGAG 59.169 45.833 0.00 0.00 0.00 4.30
3210 3316 3.331591 TGGGACGTAGGGAGTATATGCTA 59.668 47.826 0.00 0.00 0.00 3.49
3218 3324 5.017093 AGGGAGTATATGCTAGTGGTCAT 57.983 43.478 0.00 0.00 0.00 3.06
3296 3402 8.410673 TTGAGATATAAGCTAGTGGTAGAAGG 57.589 38.462 0.00 0.00 0.00 3.46
3298 3404 5.717654 AGATATAAGCTAGTGGTAGAAGGCC 59.282 44.000 0.00 0.00 0.00 5.19
3309 3415 4.757149 GTGGTAGAAGGCCTAATTGCATAG 59.243 45.833 5.16 0.00 0.00 2.23
3345 3451 7.473735 TCCTCTATCTGGCTCATAGTTTATG 57.526 40.000 4.01 0.00 37.52 1.90
3349 3455 4.077300 TCTGGCTCATAGTTTATGGCTG 57.923 45.455 8.42 0.00 36.81 4.85
3350 3456 3.455910 TCTGGCTCATAGTTTATGGCTGT 59.544 43.478 8.42 0.00 36.81 4.40
3355 3461 5.360591 GCTCATAGTTTATGGCTGTACTGT 58.639 41.667 1.46 0.00 36.81 3.55
3357 3463 6.421202 GCTCATAGTTTATGGCTGTACTGTAC 59.579 42.308 10.98 10.98 36.81 2.90
3358 3464 6.500910 TCATAGTTTATGGCTGTACTGTACG 58.499 40.000 12.87 8.93 36.81 3.67
3380 3494 3.149196 CATGTTTTCATCCCTATCCCGG 58.851 50.000 0.00 0.00 38.64 5.73
3383 3497 2.438392 GTTTTCATCCCTATCCCGGTCT 59.562 50.000 0.00 0.00 0.00 3.85
3384 3498 2.011122 TTCATCCCTATCCCGGTCTC 57.989 55.000 0.00 0.00 0.00 3.36
3388 3502 1.158904 TCCCTATCCCGGTCTCTCAT 58.841 55.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.883084 GAGCGTGGCAATCCCGTAG 60.883 63.158 0.00 0.00 35.87 3.51
29 30 2.185867 GAGCGTGGCAATCCCGTA 59.814 61.111 0.00 0.00 35.87 4.02
30 31 4.778143 GGAGCGTGGCAATCCCGT 62.778 66.667 0.00 0.00 35.87 5.28
31 32 3.976701 AAGGAGCGTGGCAATCCCG 62.977 63.158 10.19 1.31 35.87 5.14
32 33 2.044946 AAGGAGCGTGGCAATCCC 60.045 61.111 10.19 0.60 33.30 3.85
33 34 0.749454 ATGAAGGAGCGTGGCAATCC 60.749 55.000 6.55 6.55 0.00 3.01
34 35 0.659957 GATGAAGGAGCGTGGCAATC 59.340 55.000 0.00 0.00 0.00 2.67
35 36 0.035152 TGATGAAGGAGCGTGGCAAT 60.035 50.000 0.00 0.00 0.00 3.56
36 37 0.955428 GTGATGAAGGAGCGTGGCAA 60.955 55.000 0.00 0.00 0.00 4.52
37 38 1.375908 GTGATGAAGGAGCGTGGCA 60.376 57.895 0.00 0.00 0.00 4.92
38 39 2.109126 GGTGATGAAGGAGCGTGGC 61.109 63.158 0.00 0.00 0.00 5.01
39 40 1.021390 GTGGTGATGAAGGAGCGTGG 61.021 60.000 0.00 0.00 0.00 4.94
40 41 1.021390 GGTGGTGATGAAGGAGCGTG 61.021 60.000 0.00 0.00 0.00 5.34
41 42 1.296715 GGTGGTGATGAAGGAGCGT 59.703 57.895 0.00 0.00 0.00 5.07
42 43 0.107508 ATGGTGGTGATGAAGGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
43 44 1.386533 CATGGTGGTGATGAAGGAGC 58.613 55.000 0.00 0.00 0.00 4.70
44 45 1.386533 GCATGGTGGTGATGAAGGAG 58.613 55.000 0.00 0.00 0.00 3.69
45 46 0.034186 GGCATGGTGGTGATGAAGGA 60.034 55.000 0.00 0.00 0.00 3.36
46 47 1.378882 CGGCATGGTGGTGATGAAGG 61.379 60.000 0.00 0.00 0.00 3.46
47 48 0.677731 ACGGCATGGTGGTGATGAAG 60.678 55.000 0.00 0.00 0.00 3.02
48 49 0.676466 GACGGCATGGTGGTGATGAA 60.676 55.000 0.00 0.00 0.00 2.57
49 50 1.078497 GACGGCATGGTGGTGATGA 60.078 57.895 0.00 0.00 0.00 2.92
50 51 2.463620 CGACGGCATGGTGGTGATG 61.464 63.158 0.00 0.00 0.00 3.07
51 52 2.125147 CGACGGCATGGTGGTGAT 60.125 61.111 0.00 0.00 0.00 3.06
52 53 3.621805 ACGACGGCATGGTGGTGA 61.622 61.111 0.00 0.00 0.00 4.02
53 54 3.422303 CACGACGGCATGGTGGTG 61.422 66.667 0.00 0.00 39.63 4.17
56 57 3.792047 CAGCACGACGGCATGGTG 61.792 66.667 0.63 0.63 39.89 4.17
59 60 4.156622 CAGCAGCACGACGGCATG 62.157 66.667 10.28 0.00 42.62 4.06
65 66 2.435586 ATCCAGCAGCAGCACGAC 60.436 61.111 3.17 0.00 45.49 4.34
66 67 2.435410 CATCCAGCAGCAGCACGA 60.435 61.111 3.17 0.00 45.49 4.35
67 68 3.506096 CCATCCAGCAGCAGCACG 61.506 66.667 3.17 0.00 45.49 5.34
68 69 2.045634 TCCATCCAGCAGCAGCAC 60.046 61.111 3.17 0.00 45.49 4.40
69 70 2.271173 CTCCATCCAGCAGCAGCA 59.729 61.111 3.17 0.00 45.49 4.41
70 71 1.818785 GACTCCATCCAGCAGCAGC 60.819 63.158 0.00 0.00 42.56 5.25
71 72 0.252479 AAGACTCCATCCAGCAGCAG 59.748 55.000 0.00 0.00 0.00 4.24
72 73 0.251354 GAAGACTCCATCCAGCAGCA 59.749 55.000 0.00 0.00 0.00 4.41
73 74 0.463474 GGAAGACTCCATCCAGCAGC 60.463 60.000 0.00 0.00 41.96 5.25
74 75 0.179936 GGGAAGACTCCATCCAGCAG 59.820 60.000 0.00 0.00 44.51 4.24
75 76 1.274703 GGGGAAGACTCCATCCAGCA 61.275 60.000 0.00 0.00 44.51 4.41
76 77 1.274703 TGGGGAAGACTCCATCCAGC 61.275 60.000 0.00 0.00 42.44 4.85
77 78 3.012153 TGGGGAAGACTCCATCCAG 57.988 57.895 0.00 0.00 42.44 3.86
82 83 0.193574 AGAGGTTGGGGAAGACTCCA 59.806 55.000 0.00 0.00 46.10 3.86
83 84 0.906066 GAGAGGTTGGGGAAGACTCC 59.094 60.000 0.00 0.00 41.59 3.85
84 85 0.906066 GGAGAGGTTGGGGAAGACTC 59.094 60.000 0.00 0.00 0.00 3.36
85 86 0.547954 GGGAGAGGTTGGGGAAGACT 60.548 60.000 0.00 0.00 0.00 3.24
86 87 0.547954 AGGGAGAGGTTGGGGAAGAC 60.548 60.000 0.00 0.00 0.00 3.01
87 88 0.252742 GAGGGAGAGGTTGGGGAAGA 60.253 60.000 0.00 0.00 0.00 2.87
88 89 0.252927 AGAGGGAGAGGTTGGGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
89 90 0.252742 GAGAGGGAGAGGTTGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
90 91 1.156322 AGAGAGGGAGAGGTTGGGGA 61.156 60.000 0.00 0.00 0.00 4.81
91 92 0.689412 GAGAGAGGGAGAGGTTGGGG 60.689 65.000 0.00 0.00 0.00 4.96
92 93 0.689412 GGAGAGAGGGAGAGGTTGGG 60.689 65.000 0.00 0.00 0.00 4.12
93 94 0.338120 AGGAGAGAGGGAGAGGTTGG 59.662 60.000 0.00 0.00 0.00 3.77
94 95 1.830477 CAAGGAGAGAGGGAGAGGTTG 59.170 57.143 0.00 0.00 0.00 3.77
95 96 1.899438 GCAAGGAGAGAGGGAGAGGTT 60.899 57.143 0.00 0.00 0.00 3.50
96 97 0.325203 GCAAGGAGAGAGGGAGAGGT 60.325 60.000 0.00 0.00 0.00 3.85
97 98 0.032217 AGCAAGGAGAGAGGGAGAGG 60.032 60.000 0.00 0.00 0.00 3.69
98 99 1.113788 CAGCAAGGAGAGAGGGAGAG 58.886 60.000 0.00 0.00 0.00 3.20
99 100 0.325110 CCAGCAAGGAGAGAGGGAGA 60.325 60.000 0.00 0.00 41.22 3.71
100 101 0.325110 TCCAGCAAGGAGAGAGGGAG 60.325 60.000 0.00 0.00 43.07 4.30
101 102 1.783708 TCCAGCAAGGAGAGAGGGA 59.216 57.895 0.00 0.00 43.07 4.20
102 103 4.468829 TCCAGCAAGGAGAGAGGG 57.531 61.111 0.00 0.00 43.07 4.30
111 112 1.651240 CCACGCCTTGATCCAGCAAG 61.651 60.000 0.00 0.00 43.74 4.01
112 113 1.675310 CCACGCCTTGATCCAGCAA 60.675 57.895 0.00 0.00 0.00 3.91
113 114 2.046023 CCACGCCTTGATCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
114 115 2.825836 CCCACGCCTTGATCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
115 116 1.153289 CTCCCACGCCTTGATCCAG 60.153 63.158 0.00 0.00 0.00 3.86
116 117 1.612146 TCTCCCACGCCTTGATCCA 60.612 57.895 0.00 0.00 0.00 3.41
117 118 1.153349 GTCTCCCACGCCTTGATCC 60.153 63.158 0.00 0.00 0.00 3.36
118 119 1.519455 CGTCTCCCACGCCTTGATC 60.519 63.158 0.00 0.00 42.87 2.92
119 120 2.579201 CGTCTCCCACGCCTTGAT 59.421 61.111 0.00 0.00 42.87 2.57
141 142 4.312231 CAACACACGTGCAGCCCG 62.312 66.667 17.22 0.00 0.00 6.13
142 143 2.477176 TTCAACACACGTGCAGCCC 61.477 57.895 17.22 0.00 0.00 5.19
143 144 1.298339 GTTCAACACACGTGCAGCC 60.298 57.895 17.22 0.00 0.00 4.85
144 145 1.651132 CGTTCAACACACGTGCAGC 60.651 57.895 17.22 0.00 32.80 5.25
145 146 1.651132 GCGTTCAACACACGTGCAG 60.651 57.895 17.22 11.45 39.92 4.41
146 147 2.401592 GCGTTCAACACACGTGCA 59.598 55.556 17.22 0.00 39.92 4.57
147 148 2.717190 CGCGTTCAACACACGTGC 60.717 61.111 17.22 0.00 40.88 5.34
148 149 2.053465 CCGCGTTCAACACACGTG 60.053 61.111 15.48 15.48 45.61 4.49
149 150 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
150 151 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
151 152 2.935955 CCTCCGCGTTCAACACAC 59.064 61.111 4.92 0.00 0.00 3.82
152 153 2.970324 GCCTCCGCGTTCAACACA 60.970 61.111 4.92 0.00 0.00 3.72
172 173 1.480219 GATCTAAGCGCCGAACCACG 61.480 60.000 2.29 0.00 42.18 4.94
173 174 1.480219 CGATCTAAGCGCCGAACCAC 61.480 60.000 2.29 0.00 0.00 4.16
174 175 1.226859 CGATCTAAGCGCCGAACCA 60.227 57.895 2.29 0.00 0.00 3.67
175 176 1.949631 CCGATCTAAGCGCCGAACC 60.950 63.158 2.29 0.00 0.00 3.62
176 177 0.526954 TTCCGATCTAAGCGCCGAAC 60.527 55.000 2.29 0.00 0.00 3.95
177 178 0.526954 GTTCCGATCTAAGCGCCGAA 60.527 55.000 2.29 0.00 0.00 4.30
178 179 1.065273 GTTCCGATCTAAGCGCCGA 59.935 57.895 2.29 0.00 0.00 5.54
179 180 0.309922 TAGTTCCGATCTAAGCGCCG 59.690 55.000 2.29 0.00 0.00 6.46
180 181 2.125685 GTTAGTTCCGATCTAAGCGCC 58.874 52.381 2.29 0.00 0.00 6.53
181 182 2.125685 GGTTAGTTCCGATCTAAGCGC 58.874 52.381 0.00 0.00 36.59 5.92
192 193 2.288961 TTCAGATCGCGGTTAGTTCC 57.711 50.000 6.13 0.00 0.00 3.62
203 204 6.114328 TCGTACTCGTAGCGATTCAGATCG 62.114 50.000 4.55 4.55 45.81 3.69
204 205 3.183976 TCGTACTCGTAGCGATTCAGATC 59.816 47.826 0.00 0.00 34.61 2.75
205 206 3.059733 GTCGTACTCGTAGCGATTCAGAT 60.060 47.826 0.00 0.00 37.00 2.90
206 207 2.283617 GTCGTACTCGTAGCGATTCAGA 59.716 50.000 0.00 0.00 37.00 3.27
207 208 2.284684 AGTCGTACTCGTAGCGATTCAG 59.715 50.000 0.00 0.00 37.00 3.02
208 209 2.274437 AGTCGTACTCGTAGCGATTCA 58.726 47.619 0.00 0.00 37.00 2.57
209 210 2.348404 GGAGTCGTACTCGTAGCGATTC 60.348 54.545 8.33 11.87 45.96 2.52
210 211 1.596727 GGAGTCGTACTCGTAGCGATT 59.403 52.381 8.33 0.00 45.96 3.34
211 212 1.216122 GGAGTCGTACTCGTAGCGAT 58.784 55.000 8.33 0.00 45.96 4.58
212 213 0.807667 GGGAGTCGTACTCGTAGCGA 60.808 60.000 8.33 0.00 45.96 4.93
213 214 0.809241 AGGGAGTCGTACTCGTAGCG 60.809 60.000 8.33 0.00 45.96 4.26
214 215 0.936600 GAGGGAGTCGTACTCGTAGC 59.063 60.000 8.33 0.00 45.96 3.58
215 216 2.306341 TGAGGGAGTCGTACTCGTAG 57.694 55.000 8.33 0.00 45.96 3.51
216 217 2.484417 GGATGAGGGAGTCGTACTCGTA 60.484 54.545 8.33 0.00 45.96 3.43
217 218 1.666054 GATGAGGGAGTCGTACTCGT 58.334 55.000 8.33 3.38 45.96 4.18
218 219 0.945813 GGATGAGGGAGTCGTACTCG 59.054 60.000 8.33 0.00 45.96 4.18
219 220 0.945813 CGGATGAGGGAGTCGTACTC 59.054 60.000 6.50 6.50 44.32 2.59
220 221 1.102222 GCGGATGAGGGAGTCGTACT 61.102 60.000 0.00 0.00 0.00 2.73
221 222 1.359475 GCGGATGAGGGAGTCGTAC 59.641 63.158 0.00 0.00 0.00 3.67
222 223 2.184830 CGCGGATGAGGGAGTCGTA 61.185 63.158 0.00 0.00 0.00 3.43
223 224 3.518998 CGCGGATGAGGGAGTCGT 61.519 66.667 0.00 0.00 0.00 4.34
224 225 2.938539 GAACGCGGATGAGGGAGTCG 62.939 65.000 12.47 0.00 0.00 4.18
225 226 1.227002 GAACGCGGATGAGGGAGTC 60.227 63.158 12.47 0.00 0.00 3.36
226 227 1.258445 AAGAACGCGGATGAGGGAGT 61.258 55.000 12.47 0.00 0.00 3.85
227 228 0.807667 CAAGAACGCGGATGAGGGAG 60.808 60.000 12.47 0.00 0.00 4.30
228 229 1.218047 CAAGAACGCGGATGAGGGA 59.782 57.895 12.47 0.00 0.00 4.20
229 230 2.464459 GCAAGAACGCGGATGAGGG 61.464 63.158 12.47 0.00 0.00 4.30
230 231 1.298157 TTGCAAGAACGCGGATGAGG 61.298 55.000 12.47 0.00 33.35 3.86
231 232 0.179215 GTTGCAAGAACGCGGATGAG 60.179 55.000 12.47 0.00 33.35 2.90
232 233 1.866237 GTTGCAAGAACGCGGATGA 59.134 52.632 12.47 0.00 33.35 2.92
233 234 1.509787 CGTTGCAAGAACGCGGATG 60.510 57.895 12.47 4.60 36.82 3.51
234 235 2.860293 CGTTGCAAGAACGCGGAT 59.140 55.556 12.47 0.00 36.82 4.18
239 240 1.438710 CGGAAGCGTTGCAAGAACG 60.439 57.895 0.00 1.25 45.56 3.95
240 241 4.515107 CGGAAGCGTTGCAAGAAC 57.485 55.556 0.00 0.00 0.00 3.01
257 258 1.502231 ACCATTGTAGATCGCGATGC 58.498 50.000 29.09 17.53 0.00 3.91
258 259 4.237724 ACATACCATTGTAGATCGCGATG 58.762 43.478 29.09 11.78 0.00 3.84
259 260 4.521130 ACATACCATTGTAGATCGCGAT 57.479 40.909 23.97 23.97 0.00 4.58
267 268 5.928839 GGAGTGCATCTACATACCATTGTAG 59.071 44.000 5.47 5.47 46.85 2.74
268 269 5.221641 GGGAGTGCATCTACATACCATTGTA 60.222 44.000 0.00 0.00 0.00 2.41
269 270 4.444876 GGGAGTGCATCTACATACCATTGT 60.445 45.833 0.00 0.00 0.00 2.71
270 271 4.067896 GGGAGTGCATCTACATACCATTG 58.932 47.826 0.00 0.00 0.00 2.82
271 272 3.073062 GGGGAGTGCATCTACATACCATT 59.927 47.826 0.00 0.00 0.00 3.16
272 273 2.639839 GGGGAGTGCATCTACATACCAT 59.360 50.000 0.00 0.00 0.00 3.55
273 274 2.047061 GGGGAGTGCATCTACATACCA 58.953 52.381 0.00 0.00 0.00 3.25
274 275 2.330216 AGGGGAGTGCATCTACATACC 58.670 52.381 0.00 0.00 0.00 2.73
275 276 3.244249 GGAAGGGGAGTGCATCTACATAC 60.244 52.174 0.00 0.00 0.00 2.39
276 277 2.972713 GGAAGGGGAGTGCATCTACATA 59.027 50.000 0.00 0.00 0.00 2.29
277 278 1.771255 GGAAGGGGAGTGCATCTACAT 59.229 52.381 0.00 0.00 0.00 2.29
278 279 1.204146 GGAAGGGGAGTGCATCTACA 58.796 55.000 0.00 0.00 0.00 2.74
279 280 0.470341 GGGAAGGGGAGTGCATCTAC 59.530 60.000 0.00 0.00 0.00 2.59
280 281 0.694444 GGGGAAGGGGAGTGCATCTA 60.694 60.000 0.00 0.00 0.00 1.98
281 282 2.003548 GGGGAAGGGGAGTGCATCT 61.004 63.158 0.00 0.00 0.00 2.90
282 283 1.988982 GAGGGGAAGGGGAGTGCATC 61.989 65.000 0.00 0.00 0.00 3.91
283 284 2.003548 GAGGGGAAGGGGAGTGCAT 61.004 63.158 0.00 0.00 0.00 3.96
284 285 2.610859 GAGGGGAAGGGGAGTGCA 60.611 66.667 0.00 0.00 0.00 4.57
285 286 3.787001 CGAGGGGAAGGGGAGTGC 61.787 72.222 0.00 0.00 0.00 4.40
286 287 1.918800 AACGAGGGGAAGGGGAGTG 60.919 63.158 0.00 0.00 0.00 3.51
287 288 1.918800 CAACGAGGGGAAGGGGAGT 60.919 63.158 0.00 0.00 0.00 3.85
288 289 2.990479 CAACGAGGGGAAGGGGAG 59.010 66.667 0.00 0.00 0.00 4.30
289 290 2.465010 TAGCAACGAGGGGAAGGGGA 62.465 60.000 0.00 0.00 0.00 4.81
290 291 1.972660 CTAGCAACGAGGGGAAGGGG 61.973 65.000 0.00 0.00 0.00 4.79
291 292 0.976073 TCTAGCAACGAGGGGAAGGG 60.976 60.000 0.00 0.00 0.00 3.95
292 293 1.123928 ATCTAGCAACGAGGGGAAGG 58.876 55.000 0.00 0.00 0.00 3.46
293 294 2.990066 AATCTAGCAACGAGGGGAAG 57.010 50.000 0.00 0.00 0.00 3.46
294 295 3.371965 AGTAATCTAGCAACGAGGGGAA 58.628 45.455 0.00 0.00 0.00 3.97
295 296 2.957006 GAGTAATCTAGCAACGAGGGGA 59.043 50.000 0.00 0.00 0.00 4.81
296 297 2.036089 GGAGTAATCTAGCAACGAGGGG 59.964 54.545 0.00 0.00 0.00 4.79
297 298 2.693591 TGGAGTAATCTAGCAACGAGGG 59.306 50.000 0.00 0.00 0.00 4.30
298 299 4.592485 ATGGAGTAATCTAGCAACGAGG 57.408 45.455 0.00 0.00 0.00 4.63
299 300 6.561737 TCTATGGAGTAATCTAGCAACGAG 57.438 41.667 0.00 0.00 0.00 4.18
300 301 7.230712 TCAATCTATGGAGTAATCTAGCAACGA 59.769 37.037 0.00 0.00 0.00 3.85
301 302 7.371159 TCAATCTATGGAGTAATCTAGCAACG 58.629 38.462 0.00 0.00 0.00 4.10
302 303 9.364989 GATCAATCTATGGAGTAATCTAGCAAC 57.635 37.037 0.00 0.00 0.00 4.17
303 304 9.319060 AGATCAATCTATGGAGTAATCTAGCAA 57.681 33.333 0.00 0.00 34.85 3.91
304 305 8.891985 AGATCAATCTATGGAGTAATCTAGCA 57.108 34.615 0.00 0.00 34.85 3.49
305 306 9.585099 CAAGATCAATCTATGGAGTAATCTAGC 57.415 37.037 0.00 0.00 35.76 3.42
306 307 9.585099 GCAAGATCAATCTATGGAGTAATCTAG 57.415 37.037 0.00 0.00 35.76 2.43
307 308 9.319060 AGCAAGATCAATCTATGGAGTAATCTA 57.681 33.333 0.00 0.00 35.76 1.98
308 309 8.095792 CAGCAAGATCAATCTATGGAGTAATCT 58.904 37.037 0.00 0.00 35.76 2.40
309 310 8.093307 TCAGCAAGATCAATCTATGGAGTAATC 58.907 37.037 0.00 0.00 35.76 1.75
310 311 7.971201 TCAGCAAGATCAATCTATGGAGTAAT 58.029 34.615 0.00 0.00 35.76 1.89
311 312 7.365497 TCAGCAAGATCAATCTATGGAGTAA 57.635 36.000 0.00 0.00 35.76 2.24
312 313 6.983906 TCAGCAAGATCAATCTATGGAGTA 57.016 37.500 0.00 0.00 35.76 2.59
313 314 5.883685 TCAGCAAGATCAATCTATGGAGT 57.116 39.130 0.00 0.00 35.76 3.85
314 315 5.122554 GCATCAGCAAGATCAATCTATGGAG 59.877 44.000 0.00 0.00 41.58 3.86
315 316 5.001874 GCATCAGCAAGATCAATCTATGGA 58.998 41.667 0.00 0.00 41.58 3.41
316 317 4.142881 CGCATCAGCAAGATCAATCTATGG 60.143 45.833 0.00 0.00 42.27 2.74
317 318 4.451435 ACGCATCAGCAAGATCAATCTATG 59.549 41.667 0.00 0.00 42.27 2.23
318 319 4.639334 ACGCATCAGCAAGATCAATCTAT 58.361 39.130 0.00 0.00 42.27 1.98
319 320 4.063998 ACGCATCAGCAAGATCAATCTA 57.936 40.909 0.00 0.00 42.27 1.98
320 321 2.915349 ACGCATCAGCAAGATCAATCT 58.085 42.857 0.00 0.00 42.27 2.40
321 322 4.053983 TCTACGCATCAGCAAGATCAATC 58.946 43.478 0.00 0.00 42.27 2.67
322 323 4.063998 TCTACGCATCAGCAAGATCAAT 57.936 40.909 0.00 0.00 42.27 2.57
323 324 3.525268 TCTACGCATCAGCAAGATCAA 57.475 42.857 0.00 0.00 42.27 2.57
324 325 3.525268 TTCTACGCATCAGCAAGATCA 57.475 42.857 0.00 0.00 42.27 2.92
325 326 4.864916 TTTTCTACGCATCAGCAAGATC 57.135 40.909 0.00 0.00 42.27 2.75
326 327 5.824904 AATTTTCTACGCATCAGCAAGAT 57.175 34.783 0.00 0.00 42.27 2.40
327 328 5.627499 AAATTTTCTACGCATCAGCAAGA 57.373 34.783 0.00 0.00 42.27 3.02
328 329 5.858049 TCAAAATTTTCTACGCATCAGCAAG 59.142 36.000 0.00 0.00 42.27 4.01
329 330 5.767269 TCAAAATTTTCTACGCATCAGCAA 58.233 33.333 0.00 0.00 42.27 3.91
330 331 5.369685 TCAAAATTTTCTACGCATCAGCA 57.630 34.783 0.00 0.00 42.27 4.41
331 332 6.875926 ATTCAAAATTTTCTACGCATCAGC 57.124 33.333 0.00 0.00 37.42 4.26
332 333 9.132521 AGAAATTCAAAATTTTCTACGCATCAG 57.867 29.630 0.00 0.00 39.70 2.90
333 334 8.914654 CAGAAATTCAAAATTTTCTACGCATCA 58.085 29.630 0.00 0.00 39.53 3.07
334 335 7.894753 GCAGAAATTCAAAATTTTCTACGCATC 59.105 33.333 0.00 0.00 39.53 3.91
335 336 7.599998 AGCAGAAATTCAAAATTTTCTACGCAT 59.400 29.630 0.00 0.00 39.53 4.73
336 337 6.922957 AGCAGAAATTCAAAATTTTCTACGCA 59.077 30.769 0.00 0.00 39.53 5.24
337 338 7.338440 AGCAGAAATTCAAAATTTTCTACGC 57.662 32.000 0.00 0.00 39.53 4.42
338 339 8.567221 CGTAGCAGAAATTCAAAATTTTCTACG 58.433 33.333 19.51 19.51 39.53 3.51
339 340 9.394477 ACGTAGCAGAAATTCAAAATTTTCTAC 57.606 29.630 0.00 5.68 39.53 2.59
340 341 9.959749 AACGTAGCAGAAATTCAAAATTTTCTA 57.040 25.926 0.00 0.00 39.53 2.10
341 342 8.871686 AACGTAGCAGAAATTCAAAATTTTCT 57.128 26.923 0.00 0.00 41.61 2.52
342 343 8.214472 GGAACGTAGCAGAAATTCAAAATTTTC 58.786 33.333 0.00 0.00 33.08 2.29
343 344 7.170828 GGGAACGTAGCAGAAATTCAAAATTTT 59.829 33.333 0.00 0.00 0.00 1.82
344 345 6.645003 GGGAACGTAGCAGAAATTCAAAATTT 59.355 34.615 0.00 0.00 0.00 1.82
345 346 6.156519 GGGAACGTAGCAGAAATTCAAAATT 58.843 36.000 0.00 0.00 0.00 1.82
346 347 5.336451 GGGGAACGTAGCAGAAATTCAAAAT 60.336 40.000 0.00 0.00 0.00 1.82
347 348 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
348 349 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
349 350 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
350 351 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
351 352 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
352 353 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
353 354 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
354 355 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
355 356 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
356 357 0.320374 CTGTTGGGGAACGTAGCAGA 59.680 55.000 0.00 0.00 31.30 4.26
357 358 1.298859 GCTGTTGGGGAACGTAGCAG 61.299 60.000 0.00 0.00 32.32 4.24
358 359 1.302192 GCTGTTGGGGAACGTAGCA 60.302 57.895 0.00 0.00 0.00 3.49
359 360 2.038837 GGCTGTTGGGGAACGTAGC 61.039 63.158 0.00 0.00 0.00 3.58
360 361 1.740296 CGGCTGTTGGGGAACGTAG 60.740 63.158 0.00 0.00 0.00 3.51
361 362 2.344500 CGGCTGTTGGGGAACGTA 59.656 61.111 0.00 0.00 0.00 3.57
364 365 4.660938 AGGCGGCTGTTGGGGAAC 62.661 66.667 12.25 0.00 0.00 3.62
365 366 4.344865 GAGGCGGCTGTTGGGGAA 62.345 66.667 19.63 0.00 0.00 3.97
377 378 3.391665 CTAGGTTGGGGCTGAGGCG 62.392 68.421 0.00 0.00 39.81 5.52
378 379 1.977293 CTCTAGGTTGGGGCTGAGGC 61.977 65.000 0.00 0.00 37.82 4.70
379 380 0.325671 TCTCTAGGTTGGGGCTGAGG 60.326 60.000 0.00 0.00 0.00 3.86
380 381 1.415659 CATCTCTAGGTTGGGGCTGAG 59.584 57.143 0.00 0.00 0.00 3.35
381 382 1.500474 CATCTCTAGGTTGGGGCTGA 58.500 55.000 0.00 0.00 0.00 4.26
382 383 0.471617 CCATCTCTAGGTTGGGGCTG 59.528 60.000 0.00 0.00 32.59 4.85
383 384 0.695803 CCCATCTCTAGGTTGGGGCT 60.696 60.000 14.46 0.00 46.30 5.19
384 385 1.839894 CCCATCTCTAGGTTGGGGC 59.160 63.158 14.46 0.00 46.30 5.80
429 430 2.881352 GTCGTAGCAGCAGCGACC 60.881 66.667 23.12 10.94 46.18 4.79
435 436 3.188011 CGAGAGGTCGTAGCAGCA 58.812 61.111 0.00 0.00 41.57 4.41
455 456 0.593518 CGCTGCATCTCGACGAGATT 60.594 55.000 32.44 17.96 45.86 2.40
457 458 2.106683 TCGCTGCATCTCGACGAGA 61.107 57.895 28.36 28.36 43.20 4.04
461 462 1.299014 CTCCTCGCTGCATCTCGAC 60.299 63.158 0.00 0.00 0.00 4.20
465 466 2.795110 GCTCCTCCTCGCTGCATCT 61.795 63.158 0.00 0.00 0.00 2.90
499 500 2.046314 CGGACACCATTCGGGCTT 60.046 61.111 0.00 0.00 42.05 4.35
517 518 2.803133 CGATGCCCATATCTCGTGTTGT 60.803 50.000 0.00 0.00 0.00 3.32
520 521 0.319900 GCGATGCCCATATCTCGTGT 60.320 55.000 0.00 0.00 33.80 4.49
548 549 3.507009 CGACCTCTCCCGACGACC 61.507 72.222 0.00 0.00 0.00 4.79
556 557 2.501610 GGTGATGGCGACCTCTCC 59.498 66.667 0.00 0.00 0.00 3.71
564 565 2.124736 ATGGTTCCGGTGATGGCG 60.125 61.111 0.00 0.00 0.00 5.69
571 572 0.905357 CAGAAGGAGATGGTTCCGGT 59.095 55.000 0.00 0.00 42.29 5.28
572 573 0.905357 ACAGAAGGAGATGGTTCCGG 59.095 55.000 0.00 0.00 42.29 5.14
574 575 1.280421 AGCACAGAAGGAGATGGTTCC 59.720 52.381 0.00 0.00 37.52 3.62
575 576 2.777832 AGCACAGAAGGAGATGGTTC 57.222 50.000 0.00 0.00 0.00 3.62
588 589 3.563508 CGAGTGAGATAGCATAGCACAG 58.436 50.000 0.00 0.00 25.86 3.66
595 596 2.862541 AGAGAGCGAGTGAGATAGCAT 58.137 47.619 0.00 0.00 0.00 3.79
597 598 3.135225 TGTAGAGAGCGAGTGAGATAGC 58.865 50.000 0.00 0.00 0.00 2.97
599 600 4.771903 ACTTGTAGAGAGCGAGTGAGATA 58.228 43.478 0.00 0.00 0.00 1.98
615 616 3.499563 CCCATCCCCTTTGTTGACTTGTA 60.500 47.826 0.00 0.00 0.00 2.41
616 617 2.597455 CCATCCCCTTTGTTGACTTGT 58.403 47.619 0.00 0.00 0.00 3.16
626 627 2.938798 TGTCGCCCCATCCCCTTT 60.939 61.111 0.00 0.00 0.00 3.11
642 643 4.838152 CATCGGTGCCCCCTCGTG 62.838 72.222 0.00 0.00 0.00 4.35
651 656 2.157668 CACTGTCTACAAACATCGGTGC 59.842 50.000 0.00 0.00 0.00 5.01
653 658 2.631062 TCCACTGTCTACAAACATCGGT 59.369 45.455 0.00 0.00 0.00 4.69
656 661 2.412089 GCGTCCACTGTCTACAAACATC 59.588 50.000 0.00 0.00 0.00 3.06
657 662 2.413837 GCGTCCACTGTCTACAAACAT 58.586 47.619 0.00 0.00 0.00 2.71
689 694 2.409870 ACTAGGAACGTACCCGGCG 61.410 63.158 0.00 0.00 38.78 6.46
707 712 1.301423 CAGAAAAACCGACCCGTTCA 58.699 50.000 0.00 0.00 0.00 3.18
712 717 0.875059 CTCAGCAGAAAAACCGACCC 59.125 55.000 0.00 0.00 0.00 4.46
716 721 1.069636 GCACTCTCAGCAGAAAAACCG 60.070 52.381 0.00 0.00 0.00 4.44
718 723 3.251729 TGATGCACTCTCAGCAGAAAAAC 59.748 43.478 0.00 0.00 46.36 2.43
726 731 3.439476 ACAAATCTTGATGCACTCTCAGC 59.561 43.478 0.00 0.00 0.00 4.26
728 733 4.392047 ACACAAATCTTGATGCACTCTCA 58.608 39.130 0.00 0.00 0.00 3.27
758 763 0.035439 AACTACCTGATGGCCGTTGG 60.035 55.000 14.26 14.26 36.63 3.77
767 772 3.055094 ACATTCCAAGCGAACTACCTGAT 60.055 43.478 0.00 0.00 31.79 2.90
795 800 7.343833 AGGAAAATGCTATGGAAATGTCAGATT 59.656 33.333 0.00 0.00 0.00 2.40
797 802 6.189859 AGGAAAATGCTATGGAAATGTCAGA 58.810 36.000 0.00 0.00 0.00 3.27
838 855 2.920524 TGAAACCTTCTTGTTGCGGTA 58.079 42.857 0.00 0.00 0.00 4.02
839 856 1.757682 TGAAACCTTCTTGTTGCGGT 58.242 45.000 0.00 0.00 0.00 5.68
849 866 7.382488 GGTCTGCTTAATTTCTTTGAAACCTTC 59.618 37.037 0.00 0.00 0.00 3.46
858 875 7.214467 TCGAAATGGTCTGCTTAATTTCTTT 57.786 32.000 0.00 0.00 37.04 2.52
891 908 9.965824 GAAATTTGAAATGGTCTACTCTCAAAA 57.034 29.630 0.00 0.00 36.63 2.44
892 909 9.130661 TGAAATTTGAAATGGTCTACTCTCAAA 57.869 29.630 0.00 0.00 37.24 2.69
893 910 8.690203 TGAAATTTGAAATGGTCTACTCTCAA 57.310 30.769 0.00 0.00 0.00 3.02
894 911 8.733458 CATGAAATTTGAAATGGTCTACTCTCA 58.267 33.333 0.00 0.00 0.00 3.27
895 912 8.734386 ACATGAAATTTGAAATGGTCTACTCTC 58.266 33.333 0.00 0.00 0.00 3.20
896 913 8.641498 ACATGAAATTTGAAATGGTCTACTCT 57.359 30.769 0.00 0.00 0.00 3.24
897 914 9.696917 AAACATGAAATTTGAAATGGTCTACTC 57.303 29.630 0.00 0.00 0.00 2.59
898 915 9.696917 GAAACATGAAATTTGAAATGGTCTACT 57.303 29.630 0.00 0.00 0.00 2.57
899 916 8.925700 GGAAACATGAAATTTGAAATGGTCTAC 58.074 33.333 0.00 0.00 0.00 2.59
900 917 7.812191 CGGAAACATGAAATTTGAAATGGTCTA 59.188 33.333 0.00 0.00 0.00 2.59
911 928 7.435192 GTGAACTCTTTCGGAAACATGAAATTT 59.565 33.333 0.00 0.00 33.93 1.82
950 975 2.953648 TGAACTTACCACGTCAGTCAGA 59.046 45.455 3.98 0.00 0.00 3.27
951 976 3.364889 TGAACTTACCACGTCAGTCAG 57.635 47.619 0.00 0.00 0.00 3.51
952 977 3.804786 TTGAACTTACCACGTCAGTCA 57.195 42.857 0.00 0.00 0.00 3.41
953 978 5.292589 TCTTTTTGAACTTACCACGTCAGTC 59.707 40.000 0.00 0.00 0.00 3.51
954 979 5.180271 TCTTTTTGAACTTACCACGTCAGT 58.820 37.500 0.00 0.00 0.00 3.41
955 980 5.728351 TCTTTTTGAACTTACCACGTCAG 57.272 39.130 0.00 0.00 0.00 3.51
956 981 6.497785 TTTCTTTTTGAACTTACCACGTCA 57.502 33.333 0.00 0.00 33.88 4.35
957 982 6.471198 CCTTTTCTTTTTGAACTTACCACGTC 59.529 38.462 0.00 0.00 33.88 4.34
958 983 6.071784 ACCTTTTCTTTTTGAACTTACCACGT 60.072 34.615 0.00 0.00 33.88 4.49
959 984 6.327154 ACCTTTTCTTTTTGAACTTACCACG 58.673 36.000 0.00 0.00 33.88 4.94
991 1020 7.647715 CGCTCACCTTTTCTTTTTGAATTTCTA 59.352 33.333 0.00 0.00 34.24 2.10
1004 1033 0.535102 CCACACCGCTCACCTTTTCT 60.535 55.000 0.00 0.00 0.00 2.52
1027 1059 3.016474 GACTTTGGCAGAGTCGCGC 62.016 63.158 20.63 0.00 34.76 6.86
1044 1091 0.183014 TACGTTTGGTTTGGGCCAGA 59.817 50.000 6.23 0.00 40.01 3.86
1083 1133 1.369625 CGTCTTCGGCTTGGCTTATT 58.630 50.000 0.00 0.00 0.00 1.40
1404 1469 2.482333 CGTCGAGGGGAGCGAAGAT 61.482 63.158 0.00 0.00 39.10 2.40
2209 2289 2.032924 GGTAAAGTTGCAGCGTGACTTT 59.967 45.455 19.22 19.22 43.68 2.66
2276 2358 3.558109 GCTAAGTGTTGAGAGCCTTTCCT 60.558 47.826 0.00 0.00 0.00 3.36
2305 2387 3.712016 TTGATGTTTGCTGCTACCCTA 57.288 42.857 0.00 0.00 0.00 3.53
2741 2823 4.029809 AGCTTGCCGGTACACCCC 62.030 66.667 1.90 0.00 0.00 4.95
2742 2824 2.746277 CAGCTTGCCGGTACACCC 60.746 66.667 1.90 0.00 0.00 4.61
2745 2827 0.036164 ATGAACAGCTTGCCGGTACA 59.964 50.000 1.90 0.00 0.00 2.90
2834 2918 2.472909 GCCGTACTCCTTGCCATGC 61.473 63.158 0.00 0.00 0.00 4.06
2982 3084 6.763715 ACTCAAGGCACCATATAGGAAATA 57.236 37.500 0.00 0.00 41.22 1.40
2992 3095 2.387757 ACAAACAACTCAAGGCACCAT 58.612 42.857 0.00 0.00 0.00 3.55
3069 3175 6.716628 TGACTTCTATCAACTTTGCAAATCCT 59.283 34.615 13.23 0.00 0.00 3.24
3070 3176 6.803807 GTGACTTCTATCAACTTTGCAAATCC 59.196 38.462 13.23 0.00 0.00 3.01
3071 3177 7.536622 CAGTGACTTCTATCAACTTTGCAAATC 59.463 37.037 13.23 3.28 0.00 2.17
3072 3178 7.013655 ACAGTGACTTCTATCAACTTTGCAAAT 59.986 33.333 13.23 0.00 0.00 2.32
3073 3179 6.318648 ACAGTGACTTCTATCAACTTTGCAAA 59.681 34.615 12.14 12.14 0.00 3.68
3074 3180 5.822519 ACAGTGACTTCTATCAACTTTGCAA 59.177 36.000 0.00 0.00 0.00 4.08
3075 3181 5.237127 CACAGTGACTTCTATCAACTTTGCA 59.763 40.000 0.00 0.00 0.00 4.08
3076 3182 5.683859 CACAGTGACTTCTATCAACTTTGC 58.316 41.667 0.00 0.00 0.00 3.68
3077 3183 5.468072 AGCACAGTGACTTCTATCAACTTTG 59.532 40.000 4.15 0.00 0.00 2.77
3078 3184 5.615289 AGCACAGTGACTTCTATCAACTTT 58.385 37.500 4.15 0.00 0.00 2.66
3096 3202 7.517614 TTCATTAATTACCACTTTGAGCACA 57.482 32.000 0.00 0.00 0.00 4.57
3136 3242 3.660177 AGGGAGTATCTCATGCCTAGAGA 59.340 47.826 0.00 2.85 38.91 3.10
3144 3250 1.889829 GGACGGAGGGAGTATCTCATG 59.110 57.143 0.00 0.00 38.91 3.07
3151 3257 4.474303 TTATTATGGGACGGAGGGAGTA 57.526 45.455 0.00 0.00 0.00 2.59
3152 3258 3.339713 TTATTATGGGACGGAGGGAGT 57.660 47.619 0.00 0.00 0.00 3.85
3153 3259 4.141574 TGTTTTATTATGGGACGGAGGGAG 60.142 45.833 0.00 0.00 0.00 4.30
3154 3260 3.781407 TGTTTTATTATGGGACGGAGGGA 59.219 43.478 0.00 0.00 0.00 4.20
3155 3261 3.881089 GTGTTTTATTATGGGACGGAGGG 59.119 47.826 0.00 0.00 0.00 4.30
3156 3262 4.777463 AGTGTTTTATTATGGGACGGAGG 58.223 43.478 0.00 0.00 0.00 4.30
3157 3263 5.671493 AGAGTGTTTTATTATGGGACGGAG 58.329 41.667 0.00 0.00 0.00 4.63
3158 3264 5.687166 AGAGTGTTTTATTATGGGACGGA 57.313 39.130 0.00 0.00 0.00 4.69
3160 3266 7.837202 TGTAAGAGTGTTTTATTATGGGACG 57.163 36.000 0.00 0.00 0.00 4.79
3168 3274 8.889717 CGTCCCATAATGTAAGAGTGTTTTATT 58.110 33.333 0.00 0.00 0.00 1.40
3169 3275 8.044908 ACGTCCCATAATGTAAGAGTGTTTTAT 58.955 33.333 0.00 0.00 0.00 1.40
3170 3276 7.388437 ACGTCCCATAATGTAAGAGTGTTTTA 58.612 34.615 0.00 0.00 0.00 1.52
3171 3277 6.235664 ACGTCCCATAATGTAAGAGTGTTTT 58.764 36.000 0.00 0.00 0.00 2.43
3172 3278 5.801380 ACGTCCCATAATGTAAGAGTGTTT 58.199 37.500 0.00 0.00 0.00 2.83
3173 3279 5.416271 ACGTCCCATAATGTAAGAGTGTT 57.584 39.130 0.00 0.00 0.00 3.32
3174 3280 5.068723 CCTACGTCCCATAATGTAAGAGTGT 59.931 44.000 0.00 0.00 0.00 3.55
3175 3281 5.509163 CCCTACGTCCCATAATGTAAGAGTG 60.509 48.000 0.00 0.00 0.00 3.51
3176 3282 4.587684 CCCTACGTCCCATAATGTAAGAGT 59.412 45.833 0.00 0.00 0.00 3.24
3177 3283 4.831155 TCCCTACGTCCCATAATGTAAGAG 59.169 45.833 0.00 0.00 0.00 2.85
3178 3284 4.806892 TCCCTACGTCCCATAATGTAAGA 58.193 43.478 0.00 0.00 0.00 2.10
3179 3285 4.587684 ACTCCCTACGTCCCATAATGTAAG 59.412 45.833 0.00 0.00 0.00 2.34
3180 3286 4.549668 ACTCCCTACGTCCCATAATGTAA 58.450 43.478 0.00 0.00 0.00 2.41
3181 3287 4.188937 ACTCCCTACGTCCCATAATGTA 57.811 45.455 0.00 0.00 0.00 2.29
3182 3288 3.042059 ACTCCCTACGTCCCATAATGT 57.958 47.619 0.00 0.00 0.00 2.71
3183 3289 6.683110 GCATATACTCCCTACGTCCCATAATG 60.683 46.154 0.00 0.00 0.00 1.90
3184 3290 5.363005 GCATATACTCCCTACGTCCCATAAT 59.637 44.000 0.00 0.00 0.00 1.28
3185 3291 4.708421 GCATATACTCCCTACGTCCCATAA 59.292 45.833 0.00 0.00 0.00 1.90
3186 3292 4.017775 AGCATATACTCCCTACGTCCCATA 60.018 45.833 0.00 0.00 0.00 2.74
3187 3293 3.097614 GCATATACTCCCTACGTCCCAT 58.902 50.000 0.00 0.00 0.00 4.00
3188 3294 2.109480 AGCATATACTCCCTACGTCCCA 59.891 50.000 0.00 0.00 0.00 4.37
3189 3295 2.805194 AGCATATACTCCCTACGTCCC 58.195 52.381 0.00 0.00 0.00 4.46
3190 3296 4.395542 CACTAGCATATACTCCCTACGTCC 59.604 50.000 0.00 0.00 0.00 4.79
3191 3297 4.395542 CCACTAGCATATACTCCCTACGTC 59.604 50.000 0.00 0.00 0.00 4.34
3192 3298 4.202545 ACCACTAGCATATACTCCCTACGT 60.203 45.833 0.00 0.00 0.00 3.57
3193 3299 4.333690 ACCACTAGCATATACTCCCTACG 58.666 47.826 0.00 0.00 0.00 3.51
3194 3300 5.322754 TGACCACTAGCATATACTCCCTAC 58.677 45.833 0.00 0.00 0.00 3.18
3195 3301 5.594199 TGACCACTAGCATATACTCCCTA 57.406 43.478 0.00 0.00 0.00 3.53
3196 3302 4.471078 TGACCACTAGCATATACTCCCT 57.529 45.455 0.00 0.00 0.00 4.20
3197 3303 6.852420 TTATGACCACTAGCATATACTCCC 57.148 41.667 0.00 0.00 0.00 4.30
3198 3304 9.372369 GAAATTATGACCACTAGCATATACTCC 57.628 37.037 0.00 0.00 0.00 3.85
3200 3306 9.935241 CAGAAATTATGACCACTAGCATATACT 57.065 33.333 0.00 0.00 0.00 2.12
3201 3307 9.712305 ACAGAAATTATGACCACTAGCATATAC 57.288 33.333 0.00 0.00 0.00 1.47
3239 3345 7.175104 AGGAATTTAGGCAGAAATTGTGACTA 58.825 34.615 1.12 1.12 38.76 2.59
3245 3351 6.830838 ACCTAGAGGAATTTAGGCAGAAATTG 59.169 38.462 13.00 2.65 38.76 2.32
3251 3357 5.745227 TCAAACCTAGAGGAATTTAGGCAG 58.255 41.667 1.60 0.00 40.09 4.85
3281 3387 3.399952 TTAGGCCTTCTACCACTAGCT 57.600 47.619 12.58 0.00 0.00 3.32
3296 3402 5.529060 AGAAAGTACAGCTATGCAATTAGGC 59.471 40.000 0.00 0.00 0.00 3.93
3298 3404 7.497249 AGGAAGAAAGTACAGCTATGCAATTAG 59.503 37.037 0.00 0.00 0.00 1.73
3309 3415 5.596845 CCAGATAGAGGAAGAAAGTACAGC 58.403 45.833 0.00 0.00 0.00 4.40
3345 3451 1.722011 AACATGCGTACAGTACAGCC 58.278 50.000 18.68 5.85 0.00 4.85
3349 3455 4.201783 GGGATGAAAACATGCGTACAGTAC 60.202 45.833 0.00 0.00 0.00 2.73
3350 3456 3.936453 GGGATGAAAACATGCGTACAGTA 59.064 43.478 0.00 0.00 0.00 2.74
3355 3461 4.385825 GGATAGGGATGAAAACATGCGTA 58.614 43.478 0.00 0.00 0.00 4.42
3357 3463 2.554032 GGGATAGGGATGAAAACATGCG 59.446 50.000 0.00 0.00 0.00 4.73
3358 3464 2.554032 CGGGATAGGGATGAAAACATGC 59.446 50.000 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.