Multiple sequence alignment - TraesCS5D01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G174400 chr5D 100.000 7290 0 0 1 7290 273121709 273114420 0.000000e+00 13463.0
1 TraesCS5D01G174400 chr5D 95.161 62 2 1 3767 3828 61066477 61066417 6.020000e-16 97.1
2 TraesCS5D01G174400 chr5B 88.383 2858 173 57 623 3437 308929092 308926351 0.000000e+00 3291.0
3 TraesCS5D01G174400 chr5B 92.086 1908 79 23 5396 7278 308924527 308922667 0.000000e+00 2621.0
4 TraesCS5D01G174400 chr5B 95.168 1573 40 11 3822 5385 308926055 308924510 0.000000e+00 2451.0
5 TraesCS5D01G174400 chr5B 93.645 299 19 0 3472 3770 308926350 308926052 1.440000e-121 448.0
6 TraesCS5D01G174400 chr5B 91.279 172 10 3 455 621 308929583 308929412 5.690000e-56 230.0
7 TraesCS5D01G174400 chr5B 96.774 62 1 1 3767 3828 69548050 69548110 1.290000e-17 102.0
8 TraesCS5D01G174400 chr5B 90.000 60 5 1 317 376 233806436 233806494 7.840000e-10 76.8
9 TraesCS5D01G174400 chr5A 89.474 2185 136 35 1641 3770 362420374 362418229 0.000000e+00 2675.0
10 TraesCS5D01G174400 chr5A 92.135 1920 78 26 5396 7278 362416742 362414859 0.000000e+00 2641.0
11 TraesCS5D01G174400 chr5A 91.253 1269 60 17 385 1635 362421663 362420428 0.000000e+00 1681.0
12 TraesCS5D01G174400 chr5A 96.525 777 21 3 3822 4598 362418232 362417462 0.000000e+00 1280.0
13 TraesCS5D01G174400 chr5A 92.194 743 45 9 4651 5385 362417462 362416725 0.000000e+00 1038.0
14 TraesCS5D01G174400 chr5A 89.441 161 16 1 6 166 362422033 362421874 1.240000e-47 202.0
15 TraesCS5D01G174400 chr4A 96.629 89 1 1 243 329 418604442 418604530 5.890000e-31 147.0
16 TraesCS5D01G174400 chr7D 93.939 99 1 3 234 328 503689652 503689749 2.120000e-30 145.0
17 TraesCS5D01G174400 chr7D 93.651 63 3 1 3767 3829 382256814 382256753 7.790000e-15 93.5
18 TraesCS5D01G174400 chr2A 93.878 98 3 2 244 339 777289166 777289262 2.120000e-30 145.0
19 TraesCS5D01G174400 chr2A 90.654 107 6 3 242 345 207651875 207651980 9.860000e-29 139.0
20 TraesCS5D01G174400 chr2A 93.548 93 2 3 246 335 773293454 773293363 1.280000e-27 135.0
21 TraesCS5D01G174400 chr6D 93.750 96 4 1 235 328 235208631 235208726 7.620000e-30 143.0
22 TraesCS5D01G174400 chr6B 94.681 94 2 2 243 334 459601726 459601634 7.620000e-30 143.0
23 TraesCS5D01G174400 chr6B 91.781 73 4 2 3778 3850 359864674 359864744 4.650000e-17 100.0
24 TraesCS5D01G174400 chr7A 92.157 102 4 2 231 328 661299108 661299209 2.740000e-29 141.0
25 TraesCS5D01G174400 chr4B 92.157 102 4 3 240 338 538950476 538950576 2.740000e-29 141.0
26 TraesCS5D01G174400 chr6A 98.305 59 1 0 3766 3824 454654001 454654059 3.600000e-18 104.0
27 TraesCS5D01G174400 chr3D 98.246 57 1 0 3767 3823 435451258 435451314 4.650000e-17 100.0
28 TraesCS5D01G174400 chr3A 96.667 60 2 0 3767 3826 466807007 466806948 4.650000e-17 100.0
29 TraesCS5D01G174400 chr4D 94.030 67 1 2 3762 3826 472879922 472879857 1.670000e-16 99.0
30 TraesCS5D01G174400 chr2B 92.308 65 4 1 3767 3830 38218287 38218223 2.800000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G174400 chr5D 273114420 273121709 7289 True 13463.000000 13463 100.0000 1 7290 1 chr5D.!!$R2 7289
1 TraesCS5D01G174400 chr5B 308922667 308929583 6916 True 1808.200000 3291 92.1122 455 7278 5 chr5B.!!$R1 6823
2 TraesCS5D01G174400 chr5A 362414859 362422033 7174 True 1586.166667 2675 91.8370 6 7278 6 chr5A.!!$R1 7272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.106519 GGCCAACATAGACCATGCCT 60.107 55.000 0.00 0.0 38.29 4.75 F
1332 1794 0.097674 GCTGTCATCGTTGGACATGC 59.902 55.000 0.00 8.7 43.72 4.06 F
2527 3088 0.109039 GAGTCCTTGTCCTGACGAGC 60.109 60.000 8.75 0.0 40.67 5.03 F
2772 3337 0.777446 TTAAAGCTCTTGGCAGGGGT 59.223 50.000 0.00 0.0 44.79 4.95 F
3145 3741 1.586154 CTGACCGGCAACCACCATTC 61.586 60.000 0.00 0.0 0.00 2.67 F
3776 4381 2.432510 GGGACACAAGATACTCCCTCTG 59.567 54.545 0.00 0.0 39.59 3.35 F
4659 5268 2.583024 TGGCCATCATGTTGTCTTGA 57.417 45.000 0.00 0.0 33.42 3.02 F
5760 6377 0.948678 GGGCACAACATTACACACGT 59.051 50.000 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1845 0.179004 AATGGAAACCAGCACACGGA 60.179 50.000 0.00 0.0 36.75 4.69 R
2758 3323 0.251165 TGTTAACCCCTGCCAAGAGC 60.251 55.000 2.48 0.0 44.14 4.09 R
3525 4129 0.766674 AGGTACTGAGCCCAACACCA 60.767 55.000 1.46 0.0 37.18 4.17 R
3855 4463 2.028839 TCACCTGCAGCAAAATGAATGG 60.029 45.455 8.66 0.0 0.00 3.16 R
4821 5433 2.755655 ACACCTCACTCGGAATAGACAG 59.244 50.000 0.00 0.0 0.00 3.51 R
5388 6005 0.033601 ATTGATAAAGCACCCCCGCA 60.034 50.000 0.00 0.0 0.00 5.69 R
5865 6482 0.322546 GATCAACTGGACCACCACCC 60.323 60.000 0.00 0.0 41.77 4.61 R
6631 7289 0.818445 CTCATGTCTGGGAGCATGGC 60.818 60.000 0.00 0.0 41.83 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.378514 AACCATGTCATGTCGGGCC 60.379 57.895 11.84 0.00 0.00 5.80
82 83 1.878948 CGGGCCGACCTTTTTAAGTCA 60.879 52.381 24.41 0.00 36.97 3.41
98 99 0.742281 GTCACGTGCCATGCTGATCT 60.742 55.000 11.67 0.00 0.00 2.75
114 115 1.344191 ATCTCTTCTGAGCCCAGGCC 61.344 60.000 4.70 0.00 43.17 5.19
118 119 2.549169 CTTCTGAGCCCAGGCCTTCC 62.549 65.000 0.00 0.00 43.17 3.46
119 120 3.333219 CTGAGCCCAGGCCTTCCA 61.333 66.667 0.00 0.00 43.17 3.53
147 148 4.525100 ACACCGTGCAACCCTTTTATAAAT 59.475 37.500 0.00 0.00 0.00 1.40
166 167 0.395586 TGGGCCAACATAGACCATGC 60.396 55.000 2.13 0.00 38.29 4.06
167 168 1.109323 GGGCCAACATAGACCATGCC 61.109 60.000 4.39 0.00 38.29 4.40
168 169 0.106519 GGCCAACATAGACCATGCCT 60.107 55.000 0.00 0.00 38.29 4.75
170 171 2.422803 GGCCAACATAGACCATGCCTTA 60.423 50.000 0.00 0.00 38.29 2.69
171 172 3.490348 GCCAACATAGACCATGCCTTAT 58.510 45.455 0.00 0.00 38.29 1.73
172 173 4.506625 GGCCAACATAGACCATGCCTTATA 60.507 45.833 0.00 0.00 38.29 0.98
173 174 4.455877 GCCAACATAGACCATGCCTTATAC 59.544 45.833 0.00 0.00 38.29 1.47
178 288 5.765182 ACATAGACCATGCCTTATACTTTGC 59.235 40.000 0.00 0.00 38.29 3.68
180 290 4.796606 AGACCATGCCTTATACTTTGCAT 58.203 39.130 0.00 0.00 44.79 3.96
200 313 4.092383 GCATGGTCTTTGATGCATTTTGAC 59.908 41.667 0.00 7.50 43.75 3.18
201 314 5.475719 CATGGTCTTTGATGCATTTTGACT 58.524 37.500 0.00 0.00 0.00 3.41
249 362 9.678941 TGAATCGAACATGTATCAATAGTACTC 57.321 33.333 0.00 0.00 0.00 2.59
250 363 9.130312 GAATCGAACATGTATCAATAGTACTCC 57.870 37.037 0.00 0.00 0.00 3.85
251 364 6.978338 TCGAACATGTATCAATAGTACTCCC 58.022 40.000 0.00 0.00 0.00 4.30
252 365 6.776116 TCGAACATGTATCAATAGTACTCCCT 59.224 38.462 0.00 0.00 0.00 4.20
253 366 7.040617 TCGAACATGTATCAATAGTACTCCCTC 60.041 40.741 0.00 0.00 0.00 4.30
254 367 7.040340 CGAACATGTATCAATAGTACTCCCTCT 60.040 40.741 0.00 0.00 0.00 3.69
255 368 7.531857 ACATGTATCAATAGTACTCCCTCTG 57.468 40.000 0.00 0.00 0.00 3.35
256 369 7.069986 ACATGTATCAATAGTACTCCCTCTGT 58.930 38.462 0.00 0.00 0.00 3.41
257 370 8.225416 ACATGTATCAATAGTACTCCCTCTGTA 58.775 37.037 0.00 0.00 0.00 2.74
258 371 9.078990 CATGTATCAATAGTACTCCCTCTGTAA 57.921 37.037 0.00 0.00 0.00 2.41
259 372 9.656323 ATGTATCAATAGTACTCCCTCTGTAAA 57.344 33.333 0.00 0.00 0.00 2.01
260 373 9.656323 TGTATCAATAGTACTCCCTCTGTAAAT 57.344 33.333 0.00 0.00 0.00 1.40
320 433 9.754382 ATCTAAACGCTCTTATATTTTTACGGA 57.246 29.630 0.00 0.00 0.00 4.69
321 434 9.241317 TCTAAACGCTCTTATATTTTTACGGAG 57.759 33.333 0.00 0.00 0.00 4.63
322 435 6.839820 AACGCTCTTATATTTTTACGGAGG 57.160 37.500 0.00 0.00 0.00 4.30
323 436 5.295152 ACGCTCTTATATTTTTACGGAGGG 58.705 41.667 0.00 0.00 37.95 4.30
326 439 6.522946 GCTCTTATATTTTTACGGAGGGAGT 58.477 40.000 0.00 0.00 0.00 3.85
345 458 8.511604 AGGGAGTATCATTGTATTTGTCTTTG 57.488 34.615 0.00 0.00 36.25 2.77
461 574 5.796350 AGTCAACACGTGCCTTATATTTC 57.204 39.130 17.22 0.00 0.00 2.17
492 609 3.774734 GGAGTACCTTGGTCCCAAAATT 58.225 45.455 0.00 0.00 35.33 1.82
569 686 1.134521 TGTTTATACTCCGCCTGGCAG 60.135 52.381 20.29 11.99 34.14 4.85
607 724 2.303022 AGCTGGTACTAGCAGAAAAGCA 59.697 45.455 29.93 0.00 45.98 3.91
617 734 1.821136 GCAGAAAAGCACCAGCCTAAT 59.179 47.619 0.00 0.00 43.56 1.73
618 735 3.016736 GCAGAAAAGCACCAGCCTAATA 58.983 45.455 0.00 0.00 43.56 0.98
619 736 3.443681 GCAGAAAAGCACCAGCCTAATAA 59.556 43.478 0.00 0.00 43.56 1.40
651 1088 0.586319 CGTGGCAGTAACAGTGGTTG 59.414 55.000 0.00 0.00 37.88 3.77
681 1118 5.124847 CTTTTACACAAAAGCACCAAACG 57.875 39.130 0.00 0.00 43.00 3.60
722 1159 3.332034 ACCCCGAATAAACAAACGAGAG 58.668 45.455 0.00 0.00 0.00 3.20
781 1218 0.108138 TCTTAAGCAGCGCCTTCCTC 60.108 55.000 2.29 0.00 0.00 3.71
782 1219 1.078426 TTAAGCAGCGCCTTCCTCC 60.078 57.895 2.29 0.00 0.00 4.30
783 1220 1.553690 TTAAGCAGCGCCTTCCTCCT 61.554 55.000 2.29 0.00 0.00 3.69
906 1351 2.760092 AGCTCAAAAGGCAAACAAGACA 59.240 40.909 0.00 0.00 0.00 3.41
950 1406 2.039624 GACCTCTCCCCAGCTCCA 59.960 66.667 0.00 0.00 0.00 3.86
1084 1543 5.505181 ACCTCTTGCTCTTCTTTCCATTA 57.495 39.130 0.00 0.00 0.00 1.90
1137 1599 2.107366 CACCTTTCTCCTCCCTCTCTC 58.893 57.143 0.00 0.00 0.00 3.20
1179 1641 0.244721 GATGCGCCCTTGCTTTCTTT 59.755 50.000 4.18 0.00 35.36 2.52
1251 1713 3.467226 CTCCGCCTTCCGCCCTTA 61.467 66.667 0.00 0.00 35.03 2.69
1324 1786 2.020720 TGTTTTGGTGCTGTCATCGTT 58.979 42.857 0.00 0.00 0.00 3.85
1325 1787 2.223456 TGTTTTGGTGCTGTCATCGTTG 60.223 45.455 0.00 0.00 0.00 4.10
1326 1788 0.950836 TTTGGTGCTGTCATCGTTGG 59.049 50.000 0.00 0.00 0.00 3.77
1327 1789 0.107643 TTGGTGCTGTCATCGTTGGA 59.892 50.000 0.00 0.00 0.00 3.53
1328 1790 0.602638 TGGTGCTGTCATCGTTGGAC 60.603 55.000 0.00 0.00 35.83 4.02
1329 1791 0.602638 GGTGCTGTCATCGTTGGACA 60.603 55.000 0.00 0.00 42.62 4.02
1330 1792 1.442769 GTGCTGTCATCGTTGGACAT 58.557 50.000 6.93 0.00 43.72 3.06
1331 1793 1.129251 GTGCTGTCATCGTTGGACATG 59.871 52.381 6.93 0.00 43.72 3.21
1332 1794 0.097674 GCTGTCATCGTTGGACATGC 59.902 55.000 0.00 8.70 43.72 4.06
1333 1795 0.371301 CTGTCATCGTTGGACATGCG 59.629 55.000 0.00 0.00 43.72 4.73
1334 1796 1.060937 GTCATCGTTGGACATGCGC 59.939 57.895 0.00 0.00 35.36 6.09
1373 1845 3.437049 GCGTCTAGATTTTGCCTCTGTTT 59.563 43.478 0.00 0.00 0.00 2.83
1374 1846 4.436183 GCGTCTAGATTTTGCCTCTGTTTC 60.436 45.833 0.00 0.00 0.00 2.78
1465 1943 0.179108 GGCAGATTCGCCGTACTTCT 60.179 55.000 4.24 0.00 43.52 2.85
1499 1977 6.461110 AGCTTGATAATGTTTGGATCTTGG 57.539 37.500 0.00 0.00 0.00 3.61
1501 1979 6.664816 AGCTTGATAATGTTTGGATCTTGGAA 59.335 34.615 0.00 0.00 0.00 3.53
1505 1983 8.421249 TGATAATGTTTGGATCTTGGAAGTTT 57.579 30.769 0.00 0.00 0.00 2.66
1625 2103 1.826385 CTCATTCCTTGCTCCCGTTT 58.174 50.000 0.00 0.00 0.00 3.60
1757 2295 8.268850 TCAAAGCCTCTTGTTATTATCACTTC 57.731 34.615 0.00 0.00 0.00 3.01
1764 2303 7.119262 CCTCTTGTTATTATCACTTCGGTGTTT 59.881 37.037 0.00 0.00 45.46 2.83
1776 2315 5.008217 CACTTCGGTGTTTTTAGGAATGACA 59.992 40.000 0.00 0.00 40.78 3.58
1818 2357 2.186826 AGCTGACGTTTGTGTGCCC 61.187 57.895 0.00 0.00 0.00 5.36
1828 2367 1.978455 TTGTGTGCCCTTCGTCACCT 61.978 55.000 0.00 0.00 32.51 4.00
1866 2405 4.752101 AGCTAAACTATGCTTTCGGCTATG 59.248 41.667 0.00 0.00 42.39 2.23
1879 2418 0.603975 GGCTATGCCCGATCACTTCC 60.604 60.000 0.00 0.00 44.06 3.46
1969 2508 4.026145 GCGCTAGCACTTTCTTTGATCTAG 60.026 45.833 16.45 0.00 44.35 2.43
2168 2721 2.247637 TCTTCGTATTCAAGTCGTGCG 58.752 47.619 0.00 0.00 0.00 5.34
2270 2823 1.283905 TGATCACACCGGTAGGAGAGA 59.716 52.381 6.87 0.00 41.02 3.10
2271 2824 1.950909 GATCACACCGGTAGGAGAGAG 59.049 57.143 6.87 0.00 41.02 3.20
2274 2827 0.917533 ACACCGGTAGGAGAGAGCTA 59.082 55.000 6.87 0.00 41.02 3.32
2343 2896 2.270986 GCTGAACTTGGGCCACCTG 61.271 63.158 5.23 1.66 37.76 4.00
2431 2984 3.958704 TGACGCACCTTGTTTTTATGTG 58.041 40.909 0.00 0.00 0.00 3.21
2432 2985 3.378742 TGACGCACCTTGTTTTTATGTGT 59.621 39.130 0.00 0.00 0.00 3.72
2436 2989 5.040635 CGCACCTTGTTTTTATGTGTTCTT 58.959 37.500 0.00 0.00 0.00 2.52
2437 2990 5.051774 CGCACCTTGTTTTTATGTGTTCTTG 60.052 40.000 0.00 0.00 0.00 3.02
2438 2991 5.810074 GCACCTTGTTTTTATGTGTTCTTGT 59.190 36.000 0.00 0.00 0.00 3.16
2439 2992 6.237808 GCACCTTGTTTTTATGTGTTCTTGTG 60.238 38.462 0.00 0.00 0.00 3.33
2440 2993 6.811170 CACCTTGTTTTTATGTGTTCTTGTGT 59.189 34.615 0.00 0.00 0.00 3.72
2441 2994 6.811170 ACCTTGTTTTTATGTGTTCTTGTGTG 59.189 34.615 0.00 0.00 0.00 3.82
2442 2995 6.255453 CCTTGTTTTTATGTGTTCTTGTGTGG 59.745 38.462 0.00 0.00 0.00 4.17
2443 2996 6.274157 TGTTTTTATGTGTTCTTGTGTGGT 57.726 33.333 0.00 0.00 0.00 4.16
2444 2997 6.326375 TGTTTTTATGTGTTCTTGTGTGGTC 58.674 36.000 0.00 0.00 0.00 4.02
2445 2998 6.151985 TGTTTTTATGTGTTCTTGTGTGGTCT 59.848 34.615 0.00 0.00 0.00 3.85
2446 2999 6.767524 TTTTATGTGTTCTTGTGTGGTCTT 57.232 33.333 0.00 0.00 0.00 3.01
2447 3000 5.749596 TTATGTGTTCTTGTGTGGTCTTG 57.250 39.130 0.00 0.00 0.00 3.02
2448 3001 3.342377 TGTGTTCTTGTGTGGTCTTGA 57.658 42.857 0.00 0.00 0.00 3.02
2449 3002 3.006940 TGTGTTCTTGTGTGGTCTTGAC 58.993 45.455 0.00 0.00 0.00 3.18
2527 3088 0.109039 GAGTCCTTGTCCTGACGAGC 60.109 60.000 8.75 0.00 40.67 5.03
2531 3092 1.364626 CCTTGTCCTGACGAGCATGC 61.365 60.000 10.51 10.51 40.67 4.06
2594 3155 4.684265 CGCAAGCACTGATGATGC 57.316 55.556 0.00 0.00 43.74 3.91
2616 3177 0.861837 CGCAATTCGATAGCTCCACC 59.138 55.000 0.00 0.00 41.67 4.61
2641 3203 6.469275 CGAGAAACAACAGTTCCTTTTCTTTC 59.531 38.462 12.39 4.43 36.80 2.62
2766 3331 4.026293 GCTTGAGATTAAAGCTCTTGGC 57.974 45.455 9.32 7.39 45.31 4.52
2772 3337 0.777446 TTAAAGCTCTTGGCAGGGGT 59.223 50.000 0.00 0.00 44.79 4.95
2942 3536 3.928992 ACGATGTACTGTTGATGAAGCAG 59.071 43.478 0.00 0.00 36.41 4.24
2956 3550 3.603532 TGAAGCAGCTTGTTATCTCCAG 58.396 45.455 13.91 0.00 0.00 3.86
2967 3561 7.659390 AGCTTGTTATCTCCAGTATAAAGCATC 59.341 37.037 0.00 0.00 30.33 3.91
3109 3705 6.471519 CAGCACCGTAGTACTACTATTGTTTC 59.528 42.308 26.36 13.41 32.65 2.78
3132 3728 4.687948 CAGCATATGTTATTCCTCTGACCG 59.312 45.833 4.29 0.00 0.00 4.79
3145 3741 1.586154 CTGACCGGCAACCACCATTC 61.586 60.000 0.00 0.00 0.00 2.67
3242 3838 4.141620 ACAGGATATTCCAAGCAGGTACAG 60.142 45.833 0.00 0.00 39.61 2.74
3246 3842 6.157994 AGGATATTCCAAGCAGGTACAGTAAA 59.842 38.462 0.00 0.00 39.61 2.01
3249 3845 4.425180 TCCAAGCAGGTACAGTAAACAA 57.575 40.909 0.00 0.00 39.02 2.83
3255 3851 3.482436 CAGGTACAGTAAACAAGCCCAA 58.518 45.455 0.00 0.00 0.00 4.12
3258 3856 5.708230 CAGGTACAGTAAACAAGCCCAATTA 59.292 40.000 0.00 0.00 0.00 1.40
3293 3891 5.248020 TCCATGCTTTTGATGGTACCATTTT 59.752 36.000 27.97 7.62 41.19 1.82
3322 3920 4.346730 TCCTGCTGATTCATTTGTTGGAT 58.653 39.130 0.00 0.00 0.00 3.41
3342 3940 4.437390 GGATGAGCTGGTTATGAACAAACG 60.437 45.833 0.00 0.00 0.00 3.60
3353 3951 7.442969 TGGTTATGAACAAACGTTACATCTCTT 59.557 33.333 0.00 0.00 0.00 2.85
3354 3952 7.744715 GGTTATGAACAAACGTTACATCTCTTG 59.255 37.037 0.00 0.00 0.00 3.02
3463 4067 5.779922 AGAAGTTTGCATCGTCTGTACTAA 58.220 37.500 6.96 0.00 0.00 2.24
3470 4074 4.398044 TGCATCGTCTGTACTAAGTGATGA 59.602 41.667 15.13 8.06 35.25 2.92
3525 4129 3.356290 GGGTCAACCTGTCTATGCATTT 58.644 45.455 3.54 0.00 35.85 2.32
3602 4206 6.542821 TGTCTTGGAATTCATAGTCTTTGGT 58.457 36.000 7.93 0.00 0.00 3.67
3764 4369 9.838339 AGATCAATTAACTAATAGGGACACAAG 57.162 33.333 0.00 0.00 0.00 3.16
3771 4376 6.980416 ACTAATAGGGACACAAGATACTCC 57.020 41.667 0.00 0.00 0.00 3.85
3772 4377 5.839606 ACTAATAGGGACACAAGATACTCCC 59.160 44.000 0.00 0.00 42.66 4.30
3773 4378 2.950990 AGGGACACAAGATACTCCCT 57.049 50.000 0.00 0.00 46.89 4.20
3775 4380 2.753247 GGGACACAAGATACTCCCTCT 58.247 52.381 0.00 0.00 39.59 3.69
3776 4381 2.432510 GGGACACAAGATACTCCCTCTG 59.567 54.545 0.00 0.00 39.59 3.35
3777 4382 3.100671 GGACACAAGATACTCCCTCTGT 58.899 50.000 0.00 0.00 0.00 3.41
3778 4383 4.279145 GGACACAAGATACTCCCTCTGTA 58.721 47.826 0.00 0.00 0.00 2.74
3779 4384 4.710375 GGACACAAGATACTCCCTCTGTAA 59.290 45.833 0.00 0.00 0.00 2.41
3780 4385 5.187186 GGACACAAGATACTCCCTCTGTAAA 59.813 44.000 0.00 0.00 0.00 2.01
3781 4386 6.287589 ACACAAGATACTCCCTCTGTAAAG 57.712 41.667 0.00 0.00 0.00 1.85
3782 4387 6.017192 ACACAAGATACTCCCTCTGTAAAGA 58.983 40.000 0.00 0.00 0.00 2.52
3783 4388 6.497259 ACACAAGATACTCCCTCTGTAAAGAA 59.503 38.462 0.00 0.00 0.00 2.52
3784 4389 7.038659 CACAAGATACTCCCTCTGTAAAGAAG 58.961 42.308 0.00 0.00 0.00 2.85
3785 4390 6.726764 ACAAGATACTCCCTCTGTAAAGAAGT 59.273 38.462 0.00 0.00 0.00 3.01
3786 4391 6.783708 AGATACTCCCTCTGTAAAGAAGTG 57.216 41.667 0.00 0.00 0.00 3.16
3787 4392 6.494952 AGATACTCCCTCTGTAAAGAAGTGA 58.505 40.000 0.00 0.00 0.00 3.41
3788 4393 7.129425 AGATACTCCCTCTGTAAAGAAGTGAT 58.871 38.462 0.00 0.00 0.00 3.06
3789 4394 5.669164 ACTCCCTCTGTAAAGAAGTGATC 57.331 43.478 0.00 0.00 0.00 2.92
3790 4395 5.337788 ACTCCCTCTGTAAAGAAGTGATCT 58.662 41.667 0.00 0.00 41.32 2.75
3791 4396 6.494952 ACTCCCTCTGTAAAGAAGTGATCTA 58.505 40.000 0.00 0.00 37.42 1.98
3792 4397 6.954684 ACTCCCTCTGTAAAGAAGTGATCTAA 59.045 38.462 0.00 0.00 37.42 2.10
3793 4398 7.455008 ACTCCCTCTGTAAAGAAGTGATCTAAA 59.545 37.037 0.00 0.00 37.42 1.85
3794 4399 7.612677 TCCCTCTGTAAAGAAGTGATCTAAAC 58.387 38.462 0.00 0.00 37.42 2.01
3795 4400 6.531948 CCCTCTGTAAAGAAGTGATCTAAACG 59.468 42.308 0.00 0.00 37.42 3.60
3796 4401 6.035112 CCTCTGTAAAGAAGTGATCTAAACGC 59.965 42.308 0.00 0.00 37.42 4.84
3797 4402 6.688578 TCTGTAAAGAAGTGATCTAAACGCT 58.311 36.000 0.00 0.00 37.42 5.07
3798 4403 6.807230 TCTGTAAAGAAGTGATCTAAACGCTC 59.193 38.462 0.00 0.00 37.42 5.03
3799 4404 6.688578 TGTAAAGAAGTGATCTAAACGCTCT 58.311 36.000 0.00 0.00 37.42 4.09
3800 4405 7.152645 TGTAAAGAAGTGATCTAAACGCTCTT 58.847 34.615 0.00 0.00 37.42 2.85
3801 4406 8.301720 TGTAAAGAAGTGATCTAAACGCTCTTA 58.698 33.333 0.00 0.00 37.42 2.10
3802 4407 9.303537 GTAAAGAAGTGATCTAAACGCTCTTAT 57.696 33.333 0.00 0.00 37.42 1.73
3814 4419 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3815 4420 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3816 4421 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3817 4422 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3818 4423 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3819 4424 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3820 4425 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
4135 4744 9.640952 AATAAAGGTAGGCTATTTCTTGCATTA 57.359 29.630 0.00 0.00 0.00 1.90
4188 4797 6.495181 ACTTCTGAAGGATCTGAACTGAAGTA 59.505 38.462 20.61 0.00 42.87 2.24
4460 5069 2.833794 TGGCACAGTTGACAGTACTTC 58.166 47.619 0.00 0.00 34.98 3.01
4497 5106 7.443575 CCAAACTGCATAATTACTGAGATAGCT 59.556 37.037 0.00 0.00 0.00 3.32
4659 5268 2.583024 TGGCCATCATGTTGTCTTGA 57.417 45.000 0.00 0.00 33.42 3.02
4821 5433 2.892305 CGATCCTTGACATCGGAGC 58.108 57.895 0.72 0.72 39.62 4.70
5041 5654 9.819267 AAGATACACAGCCTTATAAGTTAAGAC 57.181 33.333 11.50 0.00 0.00 3.01
5131 5748 3.244700 ACTTGAGATCCAGTCCAACCTTG 60.245 47.826 0.00 0.00 0.00 3.61
5162 5779 3.129109 GAGATTCATGCGCTGAAGATGA 58.871 45.455 21.13 13.83 46.71 2.92
5279 5896 5.583854 ACACTGCTGTATTTGATCTAGCAAG 59.416 40.000 0.00 0.00 43.02 4.01
5339 5956 4.822685 TTTGCCATCCAAGTGCATTTAT 57.177 36.364 0.00 0.00 34.51 1.40
5458 6075 3.553511 CGATAACAGCTGTTGATGACCTC 59.446 47.826 36.50 20.31 38.90 3.85
5545 6162 4.141937 TGGAAGGTCAGTGCACATATACTC 60.142 45.833 21.04 8.39 0.00 2.59
5707 6324 9.699703 GGAAGAGATGAATTACTGAAGGTATAC 57.300 37.037 0.00 0.00 0.00 1.47
5760 6377 0.948678 GGGCACAACATTACACACGT 59.051 50.000 0.00 0.00 0.00 4.49
5807 6424 3.935203 AGAACACACTTCCTATTGATGCG 59.065 43.478 0.00 0.00 0.00 4.73
5825 6442 5.580691 TGATGCGAAATCGAATAAACTGACT 59.419 36.000 7.06 0.00 37.83 3.41
5831 6448 7.295201 CGAAATCGAATAAACTGACTGGAAAA 58.705 34.615 0.00 0.00 43.02 2.29
5832 6449 7.801315 CGAAATCGAATAAACTGACTGGAAAAA 59.199 33.333 0.00 0.00 43.02 1.94
5858 6475 2.543777 TACAACTGTGGCTTCCTGAC 57.456 50.000 0.00 0.00 0.00 3.51
5863 6480 3.018423 ACTGTGGCTTCCTGACTTTTT 57.982 42.857 0.00 0.00 0.00 1.94
5864 6481 2.689983 ACTGTGGCTTCCTGACTTTTTG 59.310 45.455 0.00 0.00 0.00 2.44
5865 6482 2.031120 TGTGGCTTCCTGACTTTTTGG 58.969 47.619 0.00 0.00 0.00 3.28
5866 6483 1.341209 GTGGCTTCCTGACTTTTTGGG 59.659 52.381 0.00 0.00 0.00 4.12
5867 6484 0.969149 GGCTTCCTGACTTTTTGGGG 59.031 55.000 0.00 0.00 0.00 4.96
5868 6485 1.704641 GCTTCCTGACTTTTTGGGGT 58.295 50.000 0.00 0.00 0.00 4.95
5945 6569 3.057315 CACATTGGCGAGGTTTCTGATTT 60.057 43.478 0.00 0.00 0.00 2.17
5946 6570 3.057315 ACATTGGCGAGGTTTCTGATTTG 60.057 43.478 0.00 0.00 0.00 2.32
6064 6690 3.268330 TGAAGTCGACTGCTACTCGTAT 58.732 45.455 24.00 1.68 32.77 3.06
6067 6693 3.468770 AGTCGACTGCTACTCGTATGAT 58.531 45.455 19.30 0.00 32.77 2.45
6228 6854 1.533033 TCCAGTCGGAGCTCCACAA 60.533 57.895 31.67 14.17 35.91 3.33
6238 6864 1.303643 GCTCCACAACCTCAAGGGG 60.304 63.158 0.29 0.00 40.27 4.79
6291 6917 3.304829 TCACCATCGAAGGTCCATGATA 58.695 45.455 9.89 0.00 40.77 2.15
6292 6918 3.903714 TCACCATCGAAGGTCCATGATAT 59.096 43.478 9.89 0.00 40.77 1.63
6307 6934 6.312426 GTCCATGATATCTTATTTCCTGCTCG 59.688 42.308 3.98 0.00 0.00 5.03
6322 6949 1.002792 TGCTCGTATCCAAGATCGTCG 60.003 52.381 0.00 0.00 0.00 5.12
6402 7029 8.342634 GCTTATTTTATCTTATTTGACGCCAGA 58.657 33.333 0.00 0.00 0.00 3.86
6425 7052 8.774586 CAGAAGATTATTCTGGGGTTTATAACG 58.225 37.037 12.27 0.00 41.54 3.18
6438 7065 3.733024 TTATAACGGTTCTTGCTTGCG 57.267 42.857 0.00 0.00 0.00 4.85
6478 7110 5.565637 GCAAAGCTCGAGTAGGATCATATCA 60.566 44.000 15.13 0.00 0.00 2.15
6489 7121 7.995663 AGTAGGATCATATCAGTAGAGGAAGT 58.004 38.462 0.00 0.00 0.00 3.01
6495 7127 5.475220 TCATATCAGTAGAGGAAGTAGCAGC 59.525 44.000 0.00 0.00 0.00 5.25
6537 7186 1.064208 CCGAGTGAGTCTGTATCGTGG 59.936 57.143 0.00 0.00 0.00 4.94
6631 7289 2.159142 GCTTCTCATGGCAGGGAAATTG 60.159 50.000 0.00 0.00 0.00 2.32
6653 7311 2.171237 CCATGCTCCCAGACATGAGTAA 59.829 50.000 0.00 0.00 45.23 2.24
6661 7319 2.289631 CCAGACATGAGTAACACCAGCA 60.290 50.000 0.00 0.00 0.00 4.41
6672 7330 2.890808 ACACCAGCACTATGTATCGG 57.109 50.000 0.00 0.00 0.00 4.18
6674 7332 2.100916 ACACCAGCACTATGTATCGGAC 59.899 50.000 0.00 0.00 0.00 4.79
6775 7437 4.281435 TGATGTTACCTGAACCACGACTTA 59.719 41.667 0.00 0.00 37.22 2.24
6776 7438 4.669206 TGTTACCTGAACCACGACTTAA 57.331 40.909 0.00 0.00 37.22 1.85
6802 7464 4.276926 AGAAATCTGCTGTCTGTTTCAACC 59.723 41.667 0.00 0.00 32.66 3.77
6936 7598 0.962489 CGTCTCCTGTGTCACCTTCT 59.038 55.000 0.00 0.00 0.00 2.85
6945 7607 4.263068 CCTGTGTCACCTTCTATTCACCTT 60.263 45.833 0.00 0.00 0.00 3.50
6947 7609 6.352222 CCTGTGTCACCTTCTATTCACCTTAT 60.352 42.308 0.00 0.00 0.00 1.73
6952 7614 6.981559 GTCACCTTCTATTCACCTTATCTCAC 59.018 42.308 0.00 0.00 0.00 3.51
7202 7865 1.444119 GGAAACGTCAGGCTGCACAA 61.444 55.000 10.34 0.00 0.00 3.33
7278 7941 2.742428 AACTGTGGATGGATGGATGG 57.258 50.000 0.00 0.00 0.00 3.51
7279 7942 1.897473 ACTGTGGATGGATGGATGGA 58.103 50.000 0.00 0.00 0.00 3.41
7280 7943 2.425818 ACTGTGGATGGATGGATGGAT 58.574 47.619 0.00 0.00 0.00 3.41
7281 7944 2.107726 ACTGTGGATGGATGGATGGATG 59.892 50.000 0.00 0.00 0.00 3.51
7282 7945 2.374170 CTGTGGATGGATGGATGGATGA 59.626 50.000 0.00 0.00 0.00 2.92
7283 7946 2.990998 TGTGGATGGATGGATGGATGAT 59.009 45.455 0.00 0.00 0.00 2.45
7284 7947 3.399983 TGTGGATGGATGGATGGATGATT 59.600 43.478 0.00 0.00 0.00 2.57
7285 7948 3.762288 GTGGATGGATGGATGGATGATTG 59.238 47.826 0.00 0.00 0.00 2.67
7286 7949 3.658705 TGGATGGATGGATGGATGATTGA 59.341 43.478 0.00 0.00 0.00 2.57
7287 7950 4.106663 TGGATGGATGGATGGATGATTGAA 59.893 41.667 0.00 0.00 0.00 2.69
7288 7951 4.461781 GGATGGATGGATGGATGATTGAAC 59.538 45.833 0.00 0.00 0.00 3.18
7289 7952 3.836146 TGGATGGATGGATGATTGAACC 58.164 45.455 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.748630 GCAAATAGTACATGCTAAAAAGGCC 59.251 40.000 0.00 0.00 37.12 5.19
1 2 6.329496 TGCAAATAGTACATGCTAAAAAGGC 58.671 36.000 12.19 0.00 40.66 4.35
2 3 8.028938 AGTTGCAAATAGTACATGCTAAAAAGG 58.971 33.333 0.00 0.00 40.66 3.11
3 4 8.970691 AGTTGCAAATAGTACATGCTAAAAAG 57.029 30.769 0.00 0.00 40.66 2.27
4 5 9.405587 GAAGTTGCAAATAGTACATGCTAAAAA 57.594 29.630 0.00 0.00 40.66 1.94
12 13 6.455113 CGCGTTAGAAGTTGCAAATAGTACAT 60.455 38.462 0.00 0.00 0.00 2.29
17 18 3.485216 CCCGCGTTAGAAGTTGCAAATAG 60.485 47.826 4.92 0.00 0.00 1.73
19 20 1.199097 CCCGCGTTAGAAGTTGCAAAT 59.801 47.619 4.92 0.00 0.00 2.32
23 24 2.479198 GCCCGCGTTAGAAGTTGC 59.521 61.111 4.92 0.00 0.00 4.17
52 53 2.186644 TCGGCCCGACATGACATG 59.813 61.111 14.02 14.02 0.00 3.21
67 68 2.349155 GGCACGTGACTTAAAAAGGTCG 60.349 50.000 22.23 0.00 35.45 4.79
71 72 2.979813 GCATGGCACGTGACTTAAAAAG 59.020 45.455 24.38 5.06 0.00 2.27
82 83 0.251354 AAGAGATCAGCATGGCACGT 59.749 50.000 0.00 0.00 36.16 4.49
98 99 1.539869 AAGGCCTGGGCTCAGAAGA 60.540 57.895 24.18 0.00 43.49 2.87
114 115 2.738521 CACGGTGTCGGCTGGAAG 60.739 66.667 0.00 0.00 41.39 3.46
118 119 4.012895 GTTGCACGGTGTCGGCTG 62.013 66.667 10.24 0.00 41.39 4.85
124 125 1.989706 ATAAAAGGGTTGCACGGTGT 58.010 45.000 10.24 0.00 0.00 4.16
127 128 4.429108 CCATTTATAAAAGGGTTGCACGG 58.571 43.478 10.98 0.00 0.00 4.94
133 134 4.846940 TGTTGGCCCATTTATAAAAGGGTT 59.153 37.500 29.97 1.89 46.17 4.11
147 148 0.395586 GCATGGTCTATGTTGGCCCA 60.396 55.000 0.00 0.00 39.08 5.36
166 167 6.757897 TCAAAGACCATGCAAAGTATAAGG 57.242 37.500 0.00 0.00 0.00 2.69
167 168 6.694411 GCATCAAAGACCATGCAAAGTATAAG 59.306 38.462 0.00 0.00 44.18 1.73
168 169 6.563422 GCATCAAAGACCATGCAAAGTATAA 58.437 36.000 0.00 0.00 44.18 0.98
170 171 5.002464 GCATCAAAGACCATGCAAAGTAT 57.998 39.130 0.00 0.00 44.18 2.12
171 172 4.439305 GCATCAAAGACCATGCAAAGTA 57.561 40.909 0.00 0.00 44.18 2.24
172 173 3.308438 GCATCAAAGACCATGCAAAGT 57.692 42.857 0.00 0.00 44.18 2.66
178 288 5.475719 AGTCAAAATGCATCAAAGACCATG 58.524 37.500 0.00 0.00 0.00 3.66
180 290 6.839124 ATAGTCAAAATGCATCAAAGACCA 57.161 33.333 0.00 0.00 0.00 4.02
224 337 9.130312 GGAGTACTATTGATACATGTTCGATTC 57.870 37.037 2.30 2.00 0.00 2.52
225 338 8.088981 GGGAGTACTATTGATACATGTTCGATT 58.911 37.037 2.30 0.00 0.00 3.34
226 339 7.451877 AGGGAGTACTATTGATACATGTTCGAT 59.548 37.037 2.30 9.44 0.00 3.59
227 340 6.776116 AGGGAGTACTATTGATACATGTTCGA 59.224 38.462 2.30 2.04 0.00 3.71
228 341 6.982852 AGGGAGTACTATTGATACATGTTCG 58.017 40.000 2.30 0.00 0.00 3.95
229 342 8.085296 CAGAGGGAGTACTATTGATACATGTTC 58.915 40.741 2.30 2.28 0.00 3.18
230 343 7.565398 ACAGAGGGAGTACTATTGATACATGTT 59.435 37.037 2.30 0.00 0.00 2.71
231 344 7.069986 ACAGAGGGAGTACTATTGATACATGT 58.930 38.462 2.69 2.69 0.00 3.21
232 345 7.531857 ACAGAGGGAGTACTATTGATACATG 57.468 40.000 0.00 0.00 0.00 3.21
233 346 9.656323 TTTACAGAGGGAGTACTATTGATACAT 57.344 33.333 0.00 0.00 0.00 2.29
234 347 9.656323 ATTTACAGAGGGAGTACTATTGATACA 57.344 33.333 0.00 0.00 0.00 2.29
294 407 9.754382 TCCGTAAAAATATAAGAGCGTTTAGAT 57.246 29.630 0.00 0.00 0.00 1.98
295 408 9.241317 CTCCGTAAAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
296 409 8.485591 CCTCCGTAAAAATATAAGAGCGTTTAG 58.514 37.037 0.00 0.00 0.00 1.85
297 410 7.439056 CCCTCCGTAAAAATATAAGAGCGTTTA 59.561 37.037 0.00 0.00 0.00 2.01
298 411 6.259387 CCCTCCGTAAAAATATAAGAGCGTTT 59.741 38.462 0.00 0.00 0.00 3.60
299 412 5.756833 CCCTCCGTAAAAATATAAGAGCGTT 59.243 40.000 0.00 0.00 0.00 4.84
300 413 5.069516 TCCCTCCGTAAAAATATAAGAGCGT 59.930 40.000 0.00 0.00 0.00 5.07
301 414 5.535333 TCCCTCCGTAAAAATATAAGAGCG 58.465 41.667 0.00 0.00 0.00 5.03
302 415 6.522946 ACTCCCTCCGTAAAAATATAAGAGC 58.477 40.000 0.00 0.00 0.00 4.09
303 416 9.857957 GATACTCCCTCCGTAAAAATATAAGAG 57.142 37.037 0.00 0.00 0.00 2.85
304 417 9.370930 TGATACTCCCTCCGTAAAAATATAAGA 57.629 33.333 0.00 0.00 0.00 2.10
307 420 9.938280 CAATGATACTCCCTCCGTAAAAATATA 57.062 33.333 0.00 0.00 0.00 0.86
308 421 8.437575 ACAATGATACTCCCTCCGTAAAAATAT 58.562 33.333 0.00 0.00 0.00 1.28
309 422 7.798071 ACAATGATACTCCCTCCGTAAAAATA 58.202 34.615 0.00 0.00 0.00 1.40
310 423 6.659824 ACAATGATACTCCCTCCGTAAAAAT 58.340 36.000 0.00 0.00 0.00 1.82
311 424 6.057321 ACAATGATACTCCCTCCGTAAAAA 57.943 37.500 0.00 0.00 0.00 1.94
312 425 5.687166 ACAATGATACTCCCTCCGTAAAA 57.313 39.130 0.00 0.00 0.00 1.52
313 426 6.989155 ATACAATGATACTCCCTCCGTAAA 57.011 37.500 0.00 0.00 0.00 2.01
314 427 6.989155 AATACAATGATACTCCCTCCGTAA 57.011 37.500 0.00 0.00 0.00 3.18
315 428 6.325545 ACAAATACAATGATACTCCCTCCGTA 59.674 38.462 0.00 0.00 0.00 4.02
316 429 5.130477 ACAAATACAATGATACTCCCTCCGT 59.870 40.000 0.00 0.00 0.00 4.69
317 430 5.611374 ACAAATACAATGATACTCCCTCCG 58.389 41.667 0.00 0.00 0.00 4.63
318 431 6.831976 AGACAAATACAATGATACTCCCTCC 58.168 40.000 0.00 0.00 0.00 4.30
319 432 8.616076 CAAAGACAAATACAATGATACTCCCTC 58.384 37.037 0.00 0.00 0.00 4.30
320 433 8.109634 ACAAAGACAAATACAATGATACTCCCT 58.890 33.333 0.00 0.00 0.00 4.20
321 434 8.281212 ACAAAGACAAATACAATGATACTCCC 57.719 34.615 0.00 0.00 0.00 4.30
420 533 6.618287 TGACTTTTCTGATTTTCGTCACAT 57.382 33.333 0.00 0.00 0.00 3.21
430 543 3.243068 GGCACGTGTTGACTTTTCTGATT 60.243 43.478 18.38 0.00 0.00 2.57
431 544 2.290641 GGCACGTGTTGACTTTTCTGAT 59.709 45.455 18.38 0.00 0.00 2.90
461 574 1.207329 CAAGGTACTCCCTCCTTTCCG 59.793 57.143 0.00 0.00 45.47 4.30
492 609 1.538204 GCACACTCCTTCGTCACAAGA 60.538 52.381 0.00 0.00 0.00 3.02
542 659 2.190981 GCGGAGTATAAACACGTGGAG 58.809 52.381 21.57 0.00 32.78 3.86
569 686 1.301677 GCTGCACTGCTGTCTAACCC 61.302 60.000 9.40 0.00 0.00 4.11
607 724 4.099113 GGTCTCGTTACTTATTAGGCTGGT 59.901 45.833 0.00 0.00 0.00 4.00
617 734 1.176527 CCACGGGGTCTCGTTACTTA 58.823 55.000 0.00 0.00 41.86 2.24
618 735 1.969862 CCACGGGGTCTCGTTACTT 59.030 57.895 0.00 0.00 41.86 2.24
619 736 2.643232 GCCACGGGGTCTCGTTACT 61.643 63.158 5.12 0.00 41.86 2.24
651 1088 2.507339 TTTGTGTAAAAGCTGCTGGC 57.493 45.000 1.35 0.00 42.19 4.85
681 1118 6.282930 GGGGTTTTAACTTGGTTTAGGTTTC 58.717 40.000 0.00 0.00 30.48 2.78
722 1159 5.662324 CAAAAGCCCGTTTTATTTTCGTTC 58.338 37.500 0.00 0.00 36.11 3.95
781 1218 4.179599 GAGGGGGAGGGGAGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
782 1219 3.368501 TGAGGGGGAGGGGAGGAG 61.369 72.222 0.00 0.00 0.00 3.69
783 1220 3.695825 GTGAGGGGGAGGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
810 1250 0.711670 CACGGTGCGTATGTGTGTAC 59.288 55.000 0.00 0.00 38.32 2.90
842 1282 2.029073 CCGAGGTGACGCTGTTGT 59.971 61.111 0.00 0.00 0.00 3.32
845 1285 3.681835 GGTCCGAGGTGACGCTGT 61.682 66.667 0.00 0.00 36.07 4.40
874 1314 2.193087 TTTTGAGCTCCCCCTACCGC 62.193 60.000 12.15 0.00 0.00 5.68
875 1315 0.107654 CTTTTGAGCTCCCCCTACCG 60.108 60.000 12.15 0.00 0.00 4.02
878 1318 0.844661 TGCCTTTTGAGCTCCCCCTA 60.845 55.000 12.15 0.00 0.00 3.53
906 1351 0.765510 AAACGGGGAGAAAGCAGAGT 59.234 50.000 0.00 0.00 0.00 3.24
950 1406 3.394836 GGAGACTTGCGGGGCTCT 61.395 66.667 10.70 0.00 0.00 4.09
1084 1543 4.019321 TCCATTCCCTTCTCTGAAACGAAT 60.019 41.667 0.00 0.00 0.00 3.34
1137 1599 1.436983 GCGAAACAGGAATAGCCGGG 61.437 60.000 2.18 0.00 43.43 5.73
1251 1713 1.748493 GCGAGAGAACAGAGATCCAGT 59.252 52.381 0.00 0.00 0.00 4.00
1334 1796 4.183686 CAATTCAGCTGCGGCCGG 62.184 66.667 29.38 12.76 39.73 6.13
1373 1845 0.179004 AATGGAAACCAGCACACGGA 60.179 50.000 0.00 0.00 36.75 4.69
1374 1846 0.673437 AAATGGAAACCAGCACACGG 59.327 50.000 0.00 0.00 36.75 4.94
1458 1936 2.799871 GCTACGAAGCCAGAGAAGTAC 58.200 52.381 0.00 0.00 43.40 2.73
1499 1977 3.433957 GCTCGGGAGAAGAAGAAAACTTC 59.566 47.826 0.00 0.00 42.53 3.01
1501 1979 2.635427 AGCTCGGGAGAAGAAGAAAACT 59.365 45.455 0.00 0.00 39.18 2.66
1505 1983 1.821753 CTGAGCTCGGGAGAAGAAGAA 59.178 52.381 15.27 0.00 39.18 2.52
1757 2295 5.432885 AAGTGTCATTCCTAAAAACACCG 57.567 39.130 0.00 0.00 40.80 4.94
1776 2315 0.190069 GGGTGGGGGAAAAGGAAAGT 59.810 55.000 0.00 0.00 0.00 2.66
1786 2325 2.000701 CAGCTGTATGGGTGGGGGA 61.001 63.158 5.25 0.00 0.00 4.81
1818 2357 3.187637 GGATCTCTATCGAGGTGACGAAG 59.812 52.174 0.00 0.00 45.16 3.79
1828 2367 5.549347 AGTTTAGCTACGGATCTCTATCGA 58.451 41.667 0.00 0.00 32.44 3.59
1866 2405 6.635030 AAATAAAATAGGAAGTGATCGGGC 57.365 37.500 0.00 0.00 0.00 6.13
1899 2438 2.810439 AATCTCTCTATGCCGCTGAC 57.190 50.000 0.00 0.00 0.00 3.51
1969 2508 5.179555 CCTGACCAAAGTACTAGTGCTTTTC 59.820 44.000 29.45 25.17 41.58 2.29
2065 2604 1.885887 TGGCTGATGTACCAAAGTTGC 59.114 47.619 0.00 0.00 31.46 4.17
2270 2823 1.958902 GCAGACTGCAGAGCCTAGCT 61.959 60.000 23.35 0.00 44.26 3.32
2271 2824 1.521234 GCAGACTGCAGAGCCTAGC 60.521 63.158 23.35 14.83 44.26 3.42
2274 2827 4.756458 GCGCAGACTGCAGAGCCT 62.756 66.667 26.32 11.32 45.36 4.58
2295 2848 1.443872 CTCGCGTGTGGAGTGGTAC 60.444 63.158 5.77 0.00 0.00 3.34
2343 2896 4.314440 TCCACACGCTGCCTGGAC 62.314 66.667 0.00 0.00 0.00 4.02
2431 2984 3.309954 GTCAGTCAAGACCACACAAGAAC 59.690 47.826 0.00 0.00 32.36 3.01
2432 2985 3.197766 AGTCAGTCAAGACCACACAAGAA 59.802 43.478 0.00 0.00 39.34 2.52
2436 2989 1.831106 ACAGTCAGTCAAGACCACACA 59.169 47.619 0.00 0.00 39.34 3.72
2437 2990 2.604046 ACAGTCAGTCAAGACCACAC 57.396 50.000 0.00 0.00 39.34 3.82
2438 2991 2.766263 AGAACAGTCAGTCAAGACCACA 59.234 45.455 0.00 0.00 39.34 4.17
2439 2992 3.460857 AGAACAGTCAGTCAAGACCAC 57.539 47.619 0.00 0.00 39.34 4.16
2440 2993 3.574396 CCTAGAACAGTCAGTCAAGACCA 59.426 47.826 0.00 0.00 39.34 4.02
2441 2994 3.056465 CCCTAGAACAGTCAGTCAAGACC 60.056 52.174 0.00 0.00 39.34 3.85
2442 2995 3.056465 CCCCTAGAACAGTCAGTCAAGAC 60.056 52.174 0.00 0.00 38.81 3.01
2443 2996 3.165875 CCCCTAGAACAGTCAGTCAAGA 58.834 50.000 0.00 0.00 0.00 3.02
2444 2997 3.165875 TCCCCTAGAACAGTCAGTCAAG 58.834 50.000 0.00 0.00 0.00 3.02
2445 2998 3.165875 CTCCCCTAGAACAGTCAGTCAA 58.834 50.000 0.00 0.00 0.00 3.18
2446 2999 2.378886 TCTCCCCTAGAACAGTCAGTCA 59.621 50.000 0.00 0.00 0.00 3.41
2447 3000 3.020984 CTCTCCCCTAGAACAGTCAGTC 58.979 54.545 0.00 0.00 32.46 3.51
2448 3001 2.291930 CCTCTCCCCTAGAACAGTCAGT 60.292 54.545 0.00 0.00 32.46 3.41
2449 3002 2.291930 ACCTCTCCCCTAGAACAGTCAG 60.292 54.545 0.00 0.00 32.46 3.51
2527 3088 2.125552 TCCACGAAGGCGAGCATG 60.126 61.111 0.00 0.00 41.64 4.06
2531 3092 2.182030 GAGGTCCACGAAGGCGAG 59.818 66.667 0.00 0.00 41.64 5.03
2616 3177 5.485662 AGAAAAGGAACTGTTGTTTCTCG 57.514 39.130 13.54 0.00 40.94 4.04
2641 3203 1.203928 CACCGCGCAGAAGAGATAAG 58.796 55.000 8.75 0.00 0.00 1.73
2746 3311 4.096081 CCTGCCAAGAGCTTTAATCTCAAG 59.904 45.833 0.00 0.00 44.23 3.02
2758 3323 0.251165 TGTTAACCCCTGCCAAGAGC 60.251 55.000 2.48 0.00 44.14 4.09
2759 3324 2.286365 TTGTTAACCCCTGCCAAGAG 57.714 50.000 2.48 0.00 0.00 2.85
2766 3331 6.827586 TTAAGCACTATTTGTTAACCCCTG 57.172 37.500 2.48 0.00 0.00 4.45
2906 3478 7.993101 ACAGTACATCGTATAAGCTTTCTGTA 58.007 34.615 3.20 1.72 31.09 2.74
2908 3480 7.488150 TCAACAGTACATCGTATAAGCTTTCTG 59.512 37.037 3.20 0.00 0.00 3.02
2910 3482 7.751047 TCAACAGTACATCGTATAAGCTTTC 57.249 36.000 3.20 0.00 0.00 2.62
2911 3483 7.979537 TCATCAACAGTACATCGTATAAGCTTT 59.020 33.333 3.20 0.00 0.00 3.51
2942 3536 7.659390 AGATGCTTTATACTGGAGATAACAAGC 59.341 37.037 0.00 0.00 0.00 4.01
2956 3550 6.473455 GCACCAAACAATCAGATGCTTTATAC 59.527 38.462 0.00 0.00 0.00 1.47
2967 3561 3.921119 TTAGCTGCACCAAACAATCAG 57.079 42.857 1.02 0.00 0.00 2.90
3044 3638 3.068590 AGACTTTGTCGACGGTAAAAGGA 59.931 43.478 22.58 0.00 37.67 3.36
3075 3669 3.844577 ACTACGGTGCTGTACAACTAG 57.155 47.619 0.00 0.00 31.87 2.57
3090 3686 9.894783 ATATGCTGAAACAATAGTAGTACTACG 57.105 33.333 23.87 14.00 40.80 3.51
3109 3705 4.687948 CGGTCAGAGGAATAACATATGCTG 59.312 45.833 1.58 0.00 0.00 4.41
3132 3728 3.013921 TCGAAATAGAATGGTGGTTGCC 58.986 45.455 0.00 0.00 0.00 4.52
3145 3741 7.113965 GCAATATTGGTTTCTGCATCGAAATAG 59.886 37.037 17.02 0.00 35.56 1.73
3246 3842 8.601546 TGGAAATTTAAAGATAATTGGGCTTGT 58.398 29.630 0.00 0.00 0.00 3.16
3249 3845 7.716560 GCATGGAAATTTAAAGATAATTGGGCT 59.283 33.333 0.00 0.00 0.00 5.19
3258 3856 9.169592 CCATCAAAAGCATGGAAATTTAAAGAT 57.830 29.630 0.00 0.00 43.32 2.40
3322 3920 3.472652 ACGTTTGTTCATAACCAGCTCA 58.527 40.909 0.00 0.00 0.00 4.26
3381 3985 1.029681 GTTGCCCGACAAAAGGAACT 58.970 50.000 0.00 0.00 40.82 3.01
3382 3986 1.029681 AGTTGCCCGACAAAAGGAAC 58.970 50.000 0.00 0.00 40.82 3.62
3390 3994 1.272490 CTTCAGACTAGTTGCCCGACA 59.728 52.381 0.00 0.00 0.00 4.35
3463 4067 6.059787 AGAAATTAGAGCAAGGTCATCACT 57.940 37.500 1.84 0.00 0.00 3.41
3470 4074 6.127619 GCAACCATAAGAAATTAGAGCAAGGT 60.128 38.462 0.00 0.00 0.00 3.50
3525 4129 0.766674 AGGTACTGAGCCCAACACCA 60.767 55.000 1.46 0.00 37.18 4.17
3623 4227 3.773119 TCAGAACTAGTGGTACAATCCCC 59.227 47.826 0.00 0.00 44.16 4.81
3630 4234 5.005094 ACTCAGTCTCAGAACTAGTGGTAC 58.995 45.833 0.00 0.00 0.00 3.34
3763 4368 6.494952 TCACTTCTTTACAGAGGGAGTATCT 58.505 40.000 0.00 0.00 30.09 1.98
3764 4369 6.777213 TCACTTCTTTACAGAGGGAGTATC 57.223 41.667 0.00 0.00 30.09 2.24
3766 4371 6.494952 AGATCACTTCTTTACAGAGGGAGTA 58.505 40.000 0.00 0.00 30.09 2.59
3767 4372 5.337788 AGATCACTTCTTTACAGAGGGAGT 58.662 41.667 0.00 0.00 30.09 3.85
3768 4373 5.930837 AGATCACTTCTTTACAGAGGGAG 57.069 43.478 0.00 0.00 30.09 4.30
3769 4374 7.577046 CGTTTAGATCACTTCTTTACAGAGGGA 60.577 40.741 0.00 0.00 35.79 4.20
3770 4375 6.531948 CGTTTAGATCACTTCTTTACAGAGGG 59.468 42.308 0.00 0.00 35.79 4.30
3771 4376 6.035112 GCGTTTAGATCACTTCTTTACAGAGG 59.965 42.308 0.00 0.00 35.79 3.69
3772 4377 6.809196 AGCGTTTAGATCACTTCTTTACAGAG 59.191 38.462 0.00 0.00 35.79 3.35
3773 4378 6.688578 AGCGTTTAGATCACTTCTTTACAGA 58.311 36.000 0.00 0.00 35.79 3.41
3774 4379 6.809196 AGAGCGTTTAGATCACTTCTTTACAG 59.191 38.462 0.00 0.00 37.82 2.74
3775 4380 6.688578 AGAGCGTTTAGATCACTTCTTTACA 58.311 36.000 0.00 0.00 37.82 2.41
3776 4381 7.583860 AAGAGCGTTTAGATCACTTCTTTAC 57.416 36.000 0.00 0.00 37.82 2.01
3788 4393 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3789 4394 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3790 4395 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3791 4396 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3792 4397 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3793 4398 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3794 4399 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3795 4400 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3796 4401 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3797 4402 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3798 4403 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3799 4404 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3801 4406 8.953223 ATAGTACTCCCTCCGTAAAGAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
3802 4407 8.773033 AATAGTACTCCCTCCGTAAAGAAATA 57.227 34.615 0.00 0.00 0.00 1.40
3803 4408 7.672122 AATAGTACTCCCTCCGTAAAGAAAT 57.328 36.000 0.00 0.00 0.00 2.17
3804 4409 7.486407 AAATAGTACTCCCTCCGTAAAGAAA 57.514 36.000 0.00 0.00 0.00 2.52
3805 4410 7.486407 AAAATAGTACTCCCTCCGTAAAGAA 57.514 36.000 0.00 0.00 0.00 2.52
3806 4411 7.486407 AAAAATAGTACTCCCTCCGTAAAGA 57.514 36.000 0.00 0.00 0.00 2.52
3855 4463 2.028839 TCACCTGCAGCAAAATGAATGG 60.029 45.455 8.66 0.00 0.00 3.16
3856 4464 3.306917 TCACCTGCAGCAAAATGAATG 57.693 42.857 8.66 0.00 0.00 2.67
3857 4465 3.322828 AGTTCACCTGCAGCAAAATGAAT 59.677 39.130 8.66 5.87 0.00 2.57
3858 4466 2.694628 AGTTCACCTGCAGCAAAATGAA 59.305 40.909 8.66 9.49 0.00 2.57
3960 4569 9.638239 ATGTTTATGTAAATGTGTTCCATGAAC 57.362 29.630 0.00 0.07 42.26 3.18
3998 4607 8.689972 CCTGGCTAATGAAGAGAAACAAATATT 58.310 33.333 0.00 0.00 0.00 1.28
4188 4797 6.446781 CACAGATGCAAGAAACTTATGGAT 57.553 37.500 0.00 0.00 0.00 3.41
4460 5069 2.771089 TGCAGTTTGGCAGAACTAGAG 58.229 47.619 12.51 5.08 39.25 2.43
4659 5268 8.149647 CAGAAGTATGAGAGATTTTATCAGGCT 58.850 37.037 0.00 0.00 0.00 4.58
4741 5353 9.466497 AAATGATAATAGAAGGAGAAGCAAACA 57.534 29.630 0.00 0.00 0.00 2.83
4821 5433 2.755655 ACACCTCACTCGGAATAGACAG 59.244 50.000 0.00 0.00 0.00 3.51
5041 5654 8.007152 GCCAAAACGTTCTATGTTTTAAAATGG 58.993 33.333 0.00 4.23 43.26 3.16
5131 5748 2.983136 CGCATGAATCTCGATCAGTACC 59.017 50.000 0.00 0.00 0.00 3.34
5162 5779 2.026641 GGTTCTGGCATGCACATATGT 58.973 47.619 21.36 1.41 0.00 2.29
5320 5937 4.822685 AAATAAATGCACTTGGATGGCA 57.177 36.364 0.00 0.00 42.43 4.92
5384 6001 1.273886 GATAAAGCACCCCCGCAAAAA 59.726 47.619 0.00 0.00 0.00 1.94
5385 6002 0.892063 GATAAAGCACCCCCGCAAAA 59.108 50.000 0.00 0.00 0.00 2.44
5386 6003 0.251386 TGATAAAGCACCCCCGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
5387 6004 0.251386 TTGATAAAGCACCCCCGCAA 60.251 50.000 0.00 0.00 0.00 4.85
5388 6005 0.033601 ATTGATAAAGCACCCCCGCA 60.034 50.000 0.00 0.00 0.00 5.69
5389 6006 1.975660 TATTGATAAAGCACCCCCGC 58.024 50.000 0.00 0.00 0.00 6.13
5390 6007 5.163457 ACAAAATATTGATAAAGCACCCCCG 60.163 40.000 0.00 0.00 38.94 5.73
5391 6008 6.048509 CACAAAATATTGATAAAGCACCCCC 58.951 40.000 0.00 0.00 38.94 5.40
5392 6009 5.523552 GCACAAAATATTGATAAAGCACCCC 59.476 40.000 0.00 0.00 38.94 4.95
5393 6010 6.105333 TGCACAAAATATTGATAAAGCACCC 58.895 36.000 0.00 0.00 38.94 4.61
5394 6011 7.492020 TCATGCACAAAATATTGATAAAGCACC 59.508 33.333 0.00 0.00 38.94 5.01
5458 6075 5.005779 CGTCTCGGTTTTCTCAGGATAATTG 59.994 44.000 0.00 0.00 0.00 2.32
5721 6338 7.147461 TGTGCCCACTACCATACAGAATATAAA 60.147 37.037 0.00 0.00 0.00 1.40
5803 6420 5.220662 CCAGTCAGTTTATTCGATTTCGCAT 60.221 40.000 0.00 0.00 39.60 4.73
5831 6448 2.654863 AGCCACAGTTGTAAGCACTTT 58.345 42.857 8.57 0.00 0.00 2.66
5832 6449 2.348411 AGCCACAGTTGTAAGCACTT 57.652 45.000 8.57 0.00 0.00 3.16
5839 6456 2.047061 AGTCAGGAAGCCACAGTTGTA 58.953 47.619 0.00 0.00 0.00 2.41
5847 6464 1.703411 CCCAAAAAGTCAGGAAGCCA 58.297 50.000 0.00 0.00 0.00 4.75
5848 6465 0.969149 CCCCAAAAAGTCAGGAAGCC 59.031 55.000 0.00 0.00 0.00 4.35
5858 6475 0.397816 TGGACCACCACCCCAAAAAG 60.398 55.000 0.00 0.00 41.77 2.27
5863 6480 2.369015 AACTGGACCACCACCCCA 60.369 61.111 0.00 0.00 41.77 4.96
5864 6481 1.789576 ATCAACTGGACCACCACCCC 61.790 60.000 0.00 0.00 41.77 4.95
5865 6482 0.322546 GATCAACTGGACCACCACCC 60.323 60.000 0.00 0.00 41.77 4.61
5866 6483 0.693049 AGATCAACTGGACCACCACC 59.307 55.000 0.00 0.00 41.77 4.61
5867 6484 1.347707 TCAGATCAACTGGACCACCAC 59.652 52.381 0.00 0.00 45.76 4.16
5868 6485 1.347707 GTCAGATCAACTGGACCACCA 59.652 52.381 0.00 0.00 45.76 4.17
5934 6558 7.923414 ATACAGTAGGTTCAAATCAGAAACC 57.077 36.000 0.00 0.00 35.83 3.27
5945 6569 3.343617 GCCAGCAAATACAGTAGGTTCA 58.656 45.455 0.00 0.00 0.00 3.18
5946 6570 2.683362 GGCCAGCAAATACAGTAGGTTC 59.317 50.000 0.00 0.00 0.00 3.62
6064 6690 2.440627 CTCCTGGTGGAATGGATGATCA 59.559 50.000 0.00 0.00 42.66 2.92
6067 6693 0.548031 GCTCCTGGTGGAATGGATGA 59.452 55.000 0.00 0.00 42.66 2.92
6291 6917 5.808366 TGGATACGAGCAGGAAATAAGAT 57.192 39.130 0.00 0.00 42.51 2.40
6292 6918 5.601662 CTTGGATACGAGCAGGAAATAAGA 58.398 41.667 0.00 0.00 42.41 2.10
6402 7029 7.580007 ACCGTTATAAACCCCAGAATAATCTT 58.420 34.615 0.00 0.00 32.03 2.40
6404 7031 7.718314 AGAACCGTTATAAACCCCAGAATAATC 59.282 37.037 0.00 0.00 0.00 1.75
6423 7050 1.355210 CAACGCAAGCAAGAACCGT 59.645 52.632 0.00 0.00 45.62 4.83
6425 7052 2.381589 GTTACAACGCAAGCAAGAACC 58.618 47.619 0.00 0.00 45.62 3.62
6438 7065 2.561373 GCAGCCAGCGGTTACAAC 59.439 61.111 0.00 0.00 0.00 3.32
6478 7110 3.094484 ACTGCTGCTACTTCCTCTACT 57.906 47.619 0.00 0.00 0.00 2.57
6489 7121 1.332195 ATCCGATGCTACTGCTGCTA 58.668 50.000 0.00 0.00 40.48 3.49
6495 7127 5.573282 CGGTTATTAGAATCCGATGCTACTG 59.427 44.000 0.00 0.00 44.86 2.74
6537 7186 8.592998 CAAACTAATTACTACCATCTTCGACAC 58.407 37.037 0.00 0.00 0.00 3.67
6631 7289 0.818445 CTCATGTCTGGGAGCATGGC 60.818 60.000 0.00 0.00 41.83 4.40
6653 7311 2.100916 GTCCGATACATAGTGCTGGTGT 59.899 50.000 0.00 0.00 0.00 4.16
6661 7319 8.824756 ATATACTGATTGGTCCGATACATAGT 57.175 34.615 0.00 0.00 0.00 2.12
6713 7374 6.413892 TGATATACCAGTTGCAACATCAGAA 58.586 36.000 30.11 12.46 0.00 3.02
6751 7413 3.070446 AGTCGTGGTTCAGGTAACATCAA 59.930 43.478 0.00 0.00 40.08 2.57
6752 7414 2.631062 AGTCGTGGTTCAGGTAACATCA 59.369 45.455 0.00 0.00 40.08 3.07
6753 7415 3.314541 AGTCGTGGTTCAGGTAACATC 57.685 47.619 0.00 0.00 40.08 3.06
6754 7416 3.764237 AAGTCGTGGTTCAGGTAACAT 57.236 42.857 0.00 0.00 40.08 2.71
6755 7417 4.669206 TTAAGTCGTGGTTCAGGTAACA 57.331 40.909 0.00 0.00 40.08 2.41
6775 7437 6.866480 TGAAACAGACAGCAGATTTCTTTTT 58.134 32.000 0.00 0.00 31.86 1.94
6776 7438 6.455360 TGAAACAGACAGCAGATTTCTTTT 57.545 33.333 0.00 0.00 31.86 2.27
6802 7464 3.206964 AGATCTGATTCAGTGCATGCAG 58.793 45.455 23.41 10.99 32.61 4.41
6918 7580 4.220821 TGAATAGAAGGTGACACAGGAGAC 59.779 45.833 8.08 0.00 0.00 3.36
6936 7598 5.529289 AGGTGAGGTGAGATAAGGTGAATA 58.471 41.667 0.00 0.00 0.00 1.75
6945 7607 3.138468 TGCTAGCTAGGTGAGGTGAGATA 59.862 47.826 22.10 0.00 37.09 1.98
6947 7609 1.285078 TGCTAGCTAGGTGAGGTGAGA 59.715 52.381 22.10 0.00 37.09 3.27
6952 7614 2.100584 CTCTGTTGCTAGCTAGGTGAGG 59.899 54.545 22.10 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.