Multiple sequence alignment - TraesCS5D01G173900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G173900 chr5D 100.000 5302 0 0 1 5302 272353667 272358968 0.000000e+00 9792.0
1 TraesCS5D01G173900 chr5D 94.224 831 47 1 1944 2773 213006466 213007296 0.000000e+00 1267.0
2 TraesCS5D01G173900 chr5D 94.565 92 3 2 5211 5301 489725413 489725323 1.990000e-29 141.0
3 TraesCS5D01G173900 chr5D 96.386 83 3 0 5219 5301 276447878 276447796 2.580000e-28 137.0
4 TraesCS5D01G173900 chr5D 85.714 98 11 3 288 383 416418530 416418434 3.380000e-17 100.0
5 TraesCS5D01G173900 chr5A 92.335 1957 77 36 1 1944 362167688 362169584 0.000000e+00 2715.0
6 TraesCS5D01G173900 chr5A 93.966 1243 50 11 2777 4003 362169577 362170810 0.000000e+00 1857.0
7 TraesCS5D01G173900 chr5A 89.372 621 32 15 4129 4739 362171096 362171692 0.000000e+00 750.0
8 TraesCS5D01G173900 chr5A 94.239 243 10 4 4721 4960 362172648 362172889 8.390000e-98 368.0
9 TraesCS5D01G173900 chr5A 92.683 205 8 3 5017 5221 362172888 362173085 6.720000e-74 289.0
10 TraesCS5D01G173900 chr5A 96.923 130 4 0 4002 4131 362170892 362171021 8.940000e-53 219.0
11 TraesCS5D01G173900 chr5A 93.684 95 6 0 5208 5302 6980920 6980826 5.540000e-30 143.0
12 TraesCS5D01G173900 chr5A 85.849 106 14 1 3406 3511 362173050 362173154 1.560000e-20 111.0
13 TraesCS5D01G173900 chr5A 87.209 86 10 1 299 383 445263768 445263683 4.370000e-16 97.1
14 TraesCS5D01G173900 chr5B 90.753 1568 72 24 407 1944 308549381 308550905 0.000000e+00 2025.0
15 TraesCS5D01G173900 chr5B 91.068 1377 78 29 2777 4131 308550898 308552251 0.000000e+00 1820.0
16 TraesCS5D01G173900 chr5B 95.511 802 27 5 4129 4923 308552304 308553103 0.000000e+00 1273.0
17 TraesCS5D01G173900 chr5B 88.306 496 36 14 12 507 308548915 308549388 4.610000e-160 575.0
18 TraesCS5D01G173900 chr5B 91.694 301 16 5 4922 5221 308553265 308553557 4.940000e-110 409.0
19 TraesCS5D01G173900 chr7D 95.574 836 33 4 1944 2778 561874236 561873404 0.000000e+00 1336.0
20 TraesCS5D01G173900 chr7D 94.769 822 40 3 1953 2773 410121514 410122333 0.000000e+00 1277.0
21 TraesCS5D01G173900 chr7D 94.146 837 44 4 1943 2778 438546401 438545569 0.000000e+00 1269.0
22 TraesCS5D01G173900 chr6D 94.775 823 40 2 1954 2776 17973065 17972246 0.000000e+00 1279.0
23 TraesCS5D01G173900 chr6D 80.315 127 18 7 262 383 27511309 27511185 7.310000e-14 89.8
24 TraesCS5D01G173900 chr4D 94.286 840 41 6 1941 2777 385586262 385587097 0.000000e+00 1279.0
25 TraesCS5D01G173900 chr4D 94.033 838 47 3 1940 2775 471243119 471242283 0.000000e+00 1267.0
26 TraesCS5D01G173900 chr3D 94.026 837 46 4 1943 2778 501079271 501078438 0.000000e+00 1266.0
27 TraesCS5D01G173900 chr1D 93.853 846 43 7 1940 2784 452692939 452692102 0.000000e+00 1266.0
28 TraesCS5D01G173900 chr1D 95.556 90 3 1 5213 5302 223430853 223430941 5.540000e-30 143.0
29 TraesCS5D01G173900 chr1D 84.694 98 12 3 288 383 95869119 95869023 1.570000e-15 95.3
30 TraesCS5D01G173900 chr2A 97.647 85 2 0 5217 5301 770103190 770103106 4.280000e-31 147.0
31 TraesCS5D01G173900 chr2A 100.000 29 0 0 438 466 203665426 203665398 3.000000e-03 54.7
32 TraesCS5D01G173900 chr6A 98.750 80 1 0 5222 5301 495679394 495679315 5.540000e-30 143.0
33 TraesCS5D01G173900 chr6A 100.000 30 0 0 472 501 338003206 338003235 7.420000e-04 56.5
34 TraesCS5D01G173900 chrUn 94.565 92 3 2 5211 5301 68146052 68146142 1.990000e-29 141.0
35 TraesCS5D01G173900 chrUn 100.000 28 0 0 439 466 32515215 32515242 1.000000e-02 52.8
36 TraesCS5D01G173900 chrUn 100.000 28 0 0 439 466 262108472 262108499 1.000000e-02 52.8
37 TraesCS5D01G173900 chrUn 100.000 28 0 0 439 466 282922635 282922608 1.000000e-02 52.8
38 TraesCS5D01G173900 chr4B 97.531 81 2 0 5221 5301 187444242 187444322 7.160000e-29 139.0
39 TraesCS5D01G173900 chr4B 97.143 35 1 0 474 508 411629625 411629591 5.730000e-05 60.2
40 TraesCS5D01G173900 chr2B 95.402 87 3 1 5216 5301 800248999 800248913 2.580000e-28 137.0
41 TraesCS5D01G173900 chr2B 79.310 87 16 2 382 468 8039401 8039485 5.730000e-05 60.2
42 TraesCS5D01G173900 chr1A 85.714 98 11 3 288 383 459273346 459273250 3.380000e-17 100.0
43 TraesCS5D01G173900 chr1B 84.694 98 12 3 288 383 156850460 156850556 1.570000e-15 95.3
44 TraesCS5D01G173900 chr1B 84.536 97 13 2 288 383 632021041 632020946 1.570000e-15 95.3
45 TraesCS5D01G173900 chr1B 80.992 121 16 6 268 383 568569260 568569378 7.310000e-14 89.8
46 TraesCS5D01G173900 chr4A 94.286 35 2 0 474 508 615180478 615180444 3.000000e-03 54.7
47 TraesCS5D01G173900 chr3A 92.105 38 3 0 474 511 23210150 23210187 3.000000e-03 54.7
48 TraesCS5D01G173900 chr3A 100.000 28 0 0 439 466 55616937 55616910 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G173900 chr5D 272353667 272358968 5301 False 9792.000000 9792 100.000000 1 5302 1 chr5D.!!$F2 5301
1 TraesCS5D01G173900 chr5D 213006466 213007296 830 False 1267.000000 1267 94.224000 1944 2773 1 chr5D.!!$F1 829
2 TraesCS5D01G173900 chr5A 362167688 362173154 5466 False 901.285714 2715 92.195286 1 5221 7 chr5A.!!$F1 5220
3 TraesCS5D01G173900 chr5B 308548915 308553557 4642 False 1220.400000 2025 91.466400 12 5221 5 chr5B.!!$F1 5209
4 TraesCS5D01G173900 chr7D 561873404 561874236 832 True 1336.000000 1336 95.574000 1944 2778 1 chr7D.!!$R2 834
5 TraesCS5D01G173900 chr7D 410121514 410122333 819 False 1277.000000 1277 94.769000 1953 2773 1 chr7D.!!$F1 820
6 TraesCS5D01G173900 chr7D 438545569 438546401 832 True 1269.000000 1269 94.146000 1943 2778 1 chr7D.!!$R1 835
7 TraesCS5D01G173900 chr6D 17972246 17973065 819 True 1279.000000 1279 94.775000 1954 2776 1 chr6D.!!$R1 822
8 TraesCS5D01G173900 chr4D 385586262 385587097 835 False 1279.000000 1279 94.286000 1941 2777 1 chr4D.!!$F1 836
9 TraesCS5D01G173900 chr4D 471242283 471243119 836 True 1267.000000 1267 94.033000 1940 2775 1 chr4D.!!$R1 835
10 TraesCS5D01G173900 chr3D 501078438 501079271 833 True 1266.000000 1266 94.026000 1943 2778 1 chr3D.!!$R1 835
11 TraesCS5D01G173900 chr1D 452692102 452692939 837 True 1266.000000 1266 93.853000 1940 2784 1 chr1D.!!$R2 844


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1077 0.616111 ATCCACTCCTTCGGTCAGCT 60.616 55.000 0.0 0.0 0.00 4.24 F
1066 1189 0.477204 ATCCGTATCCTCTCCGTCCA 59.523 55.000 0.0 0.0 0.00 4.02 F
1977 2110 1.064463 CCAATATGTGTGGTGGGAGCT 60.064 52.381 0.0 0.0 0.00 4.09 F
3068 3214 0.183492 AGTGCCCTCTTCTGTGCAAA 59.817 50.000 0.0 0.0 35.16 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2945 3088 0.037882 ATAGGCGCATGTCTCCATCG 60.038 55.000 10.83 0.0 0.00 3.84 R
3015 3158 6.950842 TGACCACAATCAAGAGATCTGTAAT 58.049 36.000 0.00 0.0 31.90 1.89 R
3772 3941 3.555956 GGACGAATGATGCTAAATCGTGT 59.444 43.478 3.67 0.0 45.67 4.49 R
4406 4747 0.321653 GGTGCACTCCATTCGGAAGT 60.322 55.000 17.98 0.0 42.21 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 1.897560 GGTCACAACCTTTGGAGGAG 58.102 55.000 0.00 0.00 46.74 3.69
55 57 4.397417 CACAACCTTTGGAGGAGAATGATC 59.603 45.833 0.00 0.00 46.74 2.92
61 63 5.011533 CCTTTGGAGGAGAATGATCGTAGAT 59.988 44.000 0.00 0.00 46.74 1.98
65 67 5.473846 TGGAGGAGAATGATCGTAGATGTAC 59.526 44.000 0.00 0.00 45.12 2.90
72 74 9.678941 GAGAATGATCGTAGATGTACAAACATA 57.321 33.333 0.00 0.00 46.49 2.29
75 77 8.763049 ATGATCGTAGATGTACAAACATATGG 57.237 34.615 7.80 0.00 46.49 2.74
76 78 7.722363 TGATCGTAGATGTACAAACATATGGT 58.278 34.615 7.80 0.00 46.49 3.55
77 79 8.201464 TGATCGTAGATGTACAAACATATGGTT 58.799 33.333 7.80 3.38 46.49 3.67
78 80 9.687210 GATCGTAGATGTACAAACATATGGTTA 57.313 33.333 5.49 0.00 46.49 2.85
112 114 4.019231 GGTTTTGTCAGGTCCCTATCTCTT 60.019 45.833 0.00 0.00 0.00 2.85
115 117 2.587777 TGTCAGGTCCCTATCTCTTCCT 59.412 50.000 0.00 0.00 0.00 3.36
116 118 2.962421 GTCAGGTCCCTATCTCTTCCTG 59.038 54.545 0.00 0.00 42.36 3.86
121 123 4.226168 AGGTCCCTATCTCTTCCTGTTTTG 59.774 45.833 0.00 0.00 0.00 2.44
145 147 4.202151 GCCCACTCTGAAAAGTTGTGAAAT 60.202 41.667 0.00 0.00 0.00 2.17
146 148 5.284079 CCCACTCTGAAAAGTTGTGAAATG 58.716 41.667 0.00 0.00 0.00 2.32
294 296 6.373216 TCCGTCCATAAATAGAACTTTTGTGG 59.627 38.462 5.80 5.80 43.08 4.17
344 346 5.647658 TGTGTTTGTTCACTCATTTCAGTCT 59.352 36.000 0.00 0.00 38.90 3.24
350 352 6.330278 TGTTCACTCATTTCAGTCTATACCG 58.670 40.000 0.00 0.00 0.00 4.02
355 357 6.015856 CACTCATTTCAGTCTATACCGGATCT 60.016 42.308 9.46 0.00 0.00 2.75
422 516 4.380841 AGTTATCGCTCAAACGGATGTA 57.619 40.909 0.00 0.00 0.00 2.29
425 519 5.815740 AGTTATCGCTCAAACGGATGTAATT 59.184 36.000 0.00 0.00 0.00 1.40
428 522 6.671614 ATCGCTCAAACGGATGTAATTTAA 57.328 33.333 0.00 0.00 0.00 1.52
469 564 2.857592 TATCCGTTTGAGCGACTACC 57.142 50.000 0.00 0.00 0.00 3.18
478 573 2.888594 TGAGCGACTACCAAATAGTGC 58.111 47.619 0.00 0.00 44.64 4.40
493 589 8.275040 ACCAAATAGTGCTAGATACATCCTTTT 58.725 33.333 0.00 0.00 0.00 2.27
501 597 3.448686 AGATACATCCTTTTGAGCGACG 58.551 45.455 0.00 0.00 0.00 5.12
631 735 9.522804 GATTGGCGAATGGTATGTTATTTAAAA 57.477 29.630 0.00 0.00 0.00 1.52
636 740 8.812329 GCGAATGGTATGTTATTTAAAAATGCA 58.188 29.630 0.00 0.00 0.00 3.96
659 763 9.160496 TGCAAGATTGTTCTTTTGTTTTTGTAT 57.840 25.926 0.00 0.00 40.28 2.29
731 843 1.217183 AGATCTCCCCCTACGTGCTTA 59.783 52.381 0.00 0.00 0.00 3.09
753 865 7.569599 TTAAGTCCTCTCCTTTTTAGATGGT 57.430 36.000 0.00 0.00 0.00 3.55
957 1077 0.616111 ATCCACTCCTTCGGTCAGCT 60.616 55.000 0.00 0.00 0.00 4.24
1066 1189 0.477204 ATCCGTATCCTCTCCGTCCA 59.523 55.000 0.00 0.00 0.00 4.02
1081 1204 4.436998 CCACCCACTCGCCGTCTC 62.437 72.222 0.00 0.00 0.00 3.36
1101 1224 4.147449 CTCCGCAGCATCCGTGGA 62.147 66.667 0.00 0.00 40.71 4.02
1196 1322 3.539604 GTGTGCATGCTCTTCCTCTTAT 58.460 45.455 20.33 0.00 0.00 1.73
1198 1324 4.749099 GTGTGCATGCTCTTCCTCTTATAG 59.251 45.833 20.33 0.00 0.00 1.31
1202 1328 6.540189 GTGCATGCTCTTCCTCTTATAGAAAA 59.460 38.462 20.33 0.00 0.00 2.29
1484 1610 6.936900 AGAAATAAGTACATGCAGACACACTT 59.063 34.615 0.00 0.00 33.01 3.16
1485 1611 7.445402 AGAAATAAGTACATGCAGACACACTTT 59.555 33.333 0.00 0.00 31.61 2.66
1486 1612 4.818534 AAGTACATGCAGACACACTTTG 57.181 40.909 0.00 0.00 0.00 2.77
1487 1613 4.071961 AGTACATGCAGACACACTTTGA 57.928 40.909 0.00 0.00 0.00 2.69
1488 1614 4.645535 AGTACATGCAGACACACTTTGAT 58.354 39.130 0.00 0.00 0.00 2.57
1489 1615 5.065914 AGTACATGCAGACACACTTTGATT 58.934 37.500 0.00 0.00 0.00 2.57
1499 1625 8.454106 GCAGACACACTTTGATTTGATATACTT 58.546 33.333 0.00 0.00 0.00 2.24
1500 1626 9.764870 CAGACACACTTTGATTTGATATACTTG 57.235 33.333 0.00 0.00 0.00 3.16
1755 1886 2.737252 CGTGCTAAGGGAGAACTTCAAC 59.263 50.000 0.00 0.00 30.22 3.18
1821 1953 6.402011 CGTCATGTGCAGTGTTAATAATCACA 60.402 38.462 0.00 7.13 37.07 3.58
1822 1954 7.475015 GTCATGTGCAGTGTTAATAATCACAT 58.525 34.615 9.89 9.89 42.31 3.21
1823 1955 8.611757 GTCATGTGCAGTGTTAATAATCACATA 58.388 33.333 13.10 0.00 40.42 2.29
1824 1956 8.611757 TCATGTGCAGTGTTAATAATCACATAC 58.388 33.333 13.10 4.24 40.42 2.39
1825 1957 6.999456 TGTGCAGTGTTAATAATCACATACG 58.001 36.000 0.00 0.00 37.07 3.06
1826 1958 6.814146 TGTGCAGTGTTAATAATCACATACGA 59.186 34.615 0.00 0.00 37.07 3.43
1951 2084 5.756833 CAGGTTCGTTACTTTTAGGACAAGT 59.243 40.000 0.00 0.00 38.13 3.16
1959 2092 4.453751 ACTTTTAGGACAAGTTAACGCCA 58.546 39.130 0.00 0.00 29.75 5.69
1961 2094 5.533528 ACTTTTAGGACAAGTTAACGCCAAT 59.466 36.000 0.00 0.00 29.75 3.16
1963 2096 7.392393 ACTTTTAGGACAAGTTAACGCCAATAT 59.608 33.333 0.00 0.00 29.75 1.28
1977 2110 1.064463 CCAATATGTGTGGTGGGAGCT 60.064 52.381 0.00 0.00 0.00 4.09
2012 2145 2.558795 CGCCCTATAGCACACAGACTAT 59.441 50.000 0.00 0.00 33.71 2.12
2018 2151 5.185828 CCTATAGCACACAGACTATGCCATA 59.814 44.000 0.00 0.00 40.33 2.74
2050 2187 7.744059 CATGCATGCATGTGAAAATCTTTTTA 58.256 30.769 40.30 8.22 46.20 1.52
2051 2188 7.908827 TGCATGCATGTGAAAATCTTTTTAT 57.091 28.000 26.79 0.00 0.00 1.40
2252 2392 9.088987 TGTCTATACTGAAGTTGCCATGATATA 57.911 33.333 0.00 0.00 0.00 0.86
2702 2845 5.088680 TGCTGATGTCATCTGTTCATACA 57.911 39.130 17.91 6.50 0.00 2.29
2778 2921 2.096268 GTGGGCGTTAGTTTTTCCGTAC 60.096 50.000 0.00 0.00 0.00 3.67
2784 2927 6.348458 GGGCGTTAGTTTTTCCGTACTTTTAT 60.348 38.462 0.00 0.00 0.00 1.40
2785 2928 6.520790 GGCGTTAGTTTTTCCGTACTTTTATG 59.479 38.462 0.00 0.00 0.00 1.90
2945 3088 5.239087 GTGCAGGTACCTACTATGAGTCTAC 59.761 48.000 15.80 0.00 0.00 2.59
3039 3185 4.897509 ACAGATCTCTTGATTGTGGTCA 57.102 40.909 0.00 0.00 32.19 4.02
3068 3214 0.183492 AGTGCCCTCTTCTGTGCAAA 59.817 50.000 0.00 0.00 35.16 3.68
3237 3383 4.000325 GGTATGTTTTGGATGTTTTGGGC 59.000 43.478 0.00 0.00 0.00 5.36
3353 3505 6.224584 TGTGACTGAATGGTTGACGTTATTA 58.775 36.000 0.00 0.00 0.00 0.98
3387 3539 5.941146 AATATAAATAGGCCCCTTCCACA 57.059 39.130 0.00 0.00 0.00 4.17
3678 3846 5.309638 GAGAAGGGAATATTTGTAGGCTCC 58.690 45.833 0.00 0.00 0.00 4.70
3767 3936 8.626526 ACTTTATTAAAGAAACCAACATCACGT 58.373 29.630 20.33 0.00 41.02 4.49
3772 3941 5.821516 AAGAAACCAACATCACGTTACAA 57.178 34.783 0.00 0.00 35.52 2.41
3773 3942 5.164606 AGAAACCAACATCACGTTACAAC 57.835 39.130 0.00 0.00 35.52 3.32
3901 4079 7.373493 ACAAGCAAGTTTTCATCTAATCCTTG 58.627 34.615 0.00 0.00 32.40 3.61
3991 4171 7.331026 TGCTACTCAGTCTAGCAACATAAAAT 58.669 34.615 0.00 0.00 42.89 1.82
4024 4287 9.715121 AGATAGTTTGTACTGGATTTTTACGAA 57.285 29.630 0.00 0.00 35.78 3.85
4127 4390 8.896320 TCTGCTGTAAGTTTTTGTACTTATCA 57.104 30.769 0.00 0.00 41.29 2.15
4235 4576 2.303311 GCAGGTTTTGGTAGGAGAGTCT 59.697 50.000 0.00 0.00 0.00 3.24
4481 4828 9.893634 TCCAAAATAATGTAATCCGTTCTCTTA 57.106 29.630 0.00 0.00 0.00 2.10
4518 4866 5.298276 TGTGACCCATCTTAAAACTGAACAC 59.702 40.000 0.00 0.00 0.00 3.32
4598 4946 4.104738 CCAGAATATCAACCATGTACCCCT 59.895 45.833 0.00 0.00 0.00 4.79
4599 4947 5.065914 CAGAATATCAACCATGTACCCCTG 58.934 45.833 0.00 0.00 0.00 4.45
4603 4951 3.433306 TCAACCATGTACCCCTGAAAG 57.567 47.619 0.00 0.00 0.00 2.62
4668 5016 1.078497 CTGCCGTGCTACCAATCCA 60.078 57.895 0.00 0.00 0.00 3.41
4683 5031 3.118371 CCAATCCAGTACTCCCTTACCAC 60.118 52.174 0.00 0.00 0.00 4.16
4758 6081 6.159293 TCTAGCATGTACAAGAGTTCAACTG 58.841 40.000 0.00 0.00 0.00 3.16
4874 6200 1.391485 GTACATGCTTCACGTCTGCAG 59.609 52.381 7.63 7.63 40.18 4.41
4960 6454 6.295236 CCAATTTCTTGCCAGAACTATCCAAA 60.295 38.462 0.00 0.00 38.86 3.28
4978 6472 4.097741 TCCAAATGCATGGAGTTAATTCGG 59.902 41.667 4.87 0.00 44.52 4.30
4989 6483 5.237779 TGGAGTTAATTCGGTTTTGACTGTC 59.762 40.000 0.00 0.00 0.00 3.51
5016 6510 7.602644 GGTGTTACTCTGTGTTATGAAGAATGA 59.397 37.037 0.00 0.00 0.00 2.57
5043 6537 4.439289 GCTCATGATCCCTTTTGCAACTAC 60.439 45.833 0.00 0.00 0.00 2.73
5044 6538 4.922206 TCATGATCCCTTTTGCAACTACT 58.078 39.130 0.00 0.00 0.00 2.57
5045 6539 6.061022 TCATGATCCCTTTTGCAACTACTA 57.939 37.500 0.00 0.00 0.00 1.82
5134 6628 7.682787 ATCACCCTATCAGTCTAGTTCATTT 57.317 36.000 0.00 0.00 0.00 2.32
5154 6648 7.348815 TCATTTGATTGTATCCTCTTGGTGAT 58.651 34.615 0.00 0.00 34.23 3.06
5222 6717 7.179927 CTATTTCAGCTTCATGATGAGAGTG 57.820 40.000 12.54 2.54 42.43 3.51
5223 6718 4.548451 TTCAGCTTCATGATGAGAGTGT 57.452 40.909 12.54 0.00 42.43 3.55
5224 6719 4.548451 TCAGCTTCATGATGAGAGTGTT 57.452 40.909 12.54 0.00 36.01 3.32
5225 6720 4.251268 TCAGCTTCATGATGAGAGTGTTG 58.749 43.478 12.54 1.23 36.01 3.33
5226 6721 4.020839 TCAGCTTCATGATGAGAGTGTTGA 60.021 41.667 12.54 3.28 36.01 3.18
5228 6723 5.180680 CAGCTTCATGATGAGAGTGTTGAAA 59.819 40.000 12.54 0.00 33.12 2.69
5229 6724 5.944599 AGCTTCATGATGAGAGTGTTGAAAT 59.055 36.000 12.54 0.00 0.00 2.17
5230 6725 7.065443 CAGCTTCATGATGAGAGTGTTGAAATA 59.935 37.037 12.54 0.00 33.12 1.40
5232 6727 9.049523 GCTTCATGATGAGAGTGTTGAAATATA 57.950 33.333 12.54 0.00 0.00 0.86
5236 6731 9.608617 CATGATGAGAGTGTTGAAATATATTGC 57.391 33.333 0.00 0.00 0.00 3.56
5238 6733 6.942532 TGAGAGTGTTGAAATATATTGCCC 57.057 37.500 0.00 0.00 0.00 5.36
5239 6734 6.422333 TGAGAGTGTTGAAATATATTGCCCA 58.578 36.000 0.00 0.00 0.00 5.36
5240 6735 6.318648 TGAGAGTGTTGAAATATATTGCCCAC 59.681 38.462 12.40 12.40 0.00 4.61
5241 6736 5.594317 AGAGTGTTGAAATATATTGCCCACC 59.406 40.000 15.06 9.68 0.00 4.61
5242 6737 5.518865 AGTGTTGAAATATATTGCCCACCT 58.481 37.500 15.06 4.86 0.00 4.00
5243 6738 5.594317 AGTGTTGAAATATATTGCCCACCTC 59.406 40.000 15.06 3.10 0.00 3.85
5244 6739 4.892934 TGTTGAAATATATTGCCCACCTCC 59.107 41.667 0.00 0.00 0.00 4.30
5245 6740 4.112634 TGAAATATATTGCCCACCTCCC 57.887 45.455 0.00 0.00 0.00 4.30
5246 6741 3.726859 TGAAATATATTGCCCACCTCCCT 59.273 43.478 0.00 0.00 0.00 4.20
5247 6742 4.202567 TGAAATATATTGCCCACCTCCCTC 60.203 45.833 0.00 0.00 0.00 4.30
5248 6743 1.742308 TATATTGCCCACCTCCCTCC 58.258 55.000 0.00 0.00 0.00 4.30
5249 6744 0.328450 ATATTGCCCACCTCCCTCCA 60.328 55.000 0.00 0.00 0.00 3.86
5250 6745 0.328450 TATTGCCCACCTCCCTCCAT 60.328 55.000 0.00 0.00 0.00 3.41
5251 6746 1.649271 ATTGCCCACCTCCCTCCATC 61.649 60.000 0.00 0.00 0.00 3.51
5252 6747 2.692368 GCCCACCTCCCTCCATCA 60.692 66.667 0.00 0.00 0.00 3.07
5253 6748 2.750657 GCCCACCTCCCTCCATCAG 61.751 68.421 0.00 0.00 0.00 2.90
5255 6750 0.916358 CCCACCTCCCTCCATCAGTT 60.916 60.000 0.00 0.00 0.00 3.16
5256 6751 0.543749 CCACCTCCCTCCATCAGTTC 59.456 60.000 0.00 0.00 0.00 3.01
5258 6753 0.978146 ACCTCCCTCCATCAGTTCGG 60.978 60.000 0.00 0.00 0.00 4.30
5259 6754 0.687757 CCTCCCTCCATCAGTTCGGA 60.688 60.000 0.00 0.00 0.00 4.55
5260 6755 0.461961 CTCCCTCCATCAGTTCGGAC 59.538 60.000 0.00 0.00 0.00 4.79
5261 6756 0.041238 TCCCTCCATCAGTTCGGACT 59.959 55.000 0.00 0.00 36.25 3.85
5264 6759 2.290323 CCCTCCATCAGTTCGGACTTTT 60.290 50.000 0.00 0.00 32.54 2.27
5266 6761 3.403038 CTCCATCAGTTCGGACTTTTGT 58.597 45.455 0.00 0.00 32.54 2.83
5269 6764 4.935205 TCCATCAGTTCGGACTTTTGTATG 59.065 41.667 0.00 0.00 32.54 2.39
5271 6766 5.063944 CCATCAGTTCGGACTTTTGTATGAG 59.936 44.000 0.00 0.00 32.54 2.90
5273 6768 5.607477 TCAGTTCGGACTTTTGTATGAGTT 58.393 37.500 0.00 0.00 32.54 3.01
5274 6769 5.465390 TCAGTTCGGACTTTTGTATGAGTTG 59.535 40.000 0.00 0.00 32.54 3.16
5275 6770 4.755123 AGTTCGGACTTTTGTATGAGTTGG 59.245 41.667 0.00 0.00 29.87 3.77
5277 6772 3.074412 CGGACTTTTGTATGAGTTGGCT 58.926 45.455 0.00 0.00 0.00 4.75
5278 6773 3.120199 CGGACTTTTGTATGAGTTGGCTG 60.120 47.826 0.00 0.00 0.00 4.85
5279 6774 3.191371 GGACTTTTGTATGAGTTGGCTGG 59.809 47.826 0.00 0.00 0.00 4.85
5280 6775 4.072131 GACTTTTGTATGAGTTGGCTGGA 58.928 43.478 0.00 0.00 0.00 3.86
5281 6776 4.074970 ACTTTTGTATGAGTTGGCTGGAG 58.925 43.478 0.00 0.00 0.00 3.86
5282 6777 2.113860 TTGTATGAGTTGGCTGGAGC 57.886 50.000 0.00 0.00 41.14 4.70
5283 6778 0.983467 TGTATGAGTTGGCTGGAGCA 59.017 50.000 0.20 0.00 44.36 4.26
5284 6779 1.561076 TGTATGAGTTGGCTGGAGCAT 59.439 47.619 0.20 0.00 44.36 3.79
5285 6780 2.771372 TGTATGAGTTGGCTGGAGCATA 59.229 45.455 0.20 0.00 44.36 3.14
5286 6781 3.199727 TGTATGAGTTGGCTGGAGCATAA 59.800 43.478 0.20 0.00 44.36 1.90
5287 6782 2.877097 TGAGTTGGCTGGAGCATAAA 57.123 45.000 0.20 0.00 44.36 1.40
5288 6783 3.370840 TGAGTTGGCTGGAGCATAAAT 57.629 42.857 0.20 0.00 44.36 1.40
5289 6784 3.700538 TGAGTTGGCTGGAGCATAAATT 58.299 40.909 0.20 0.00 44.36 1.82
5290 6785 3.696051 TGAGTTGGCTGGAGCATAAATTC 59.304 43.478 0.20 0.00 44.36 2.17
5291 6786 3.696051 GAGTTGGCTGGAGCATAAATTCA 59.304 43.478 0.20 0.00 44.36 2.57
5292 6787 4.088634 AGTTGGCTGGAGCATAAATTCAA 58.911 39.130 0.20 0.00 44.36 2.69
5293 6788 4.713321 AGTTGGCTGGAGCATAAATTCAAT 59.287 37.500 0.20 0.00 44.36 2.57
5294 6789 5.893255 AGTTGGCTGGAGCATAAATTCAATA 59.107 36.000 0.20 0.00 44.36 1.90
5295 6790 6.552350 AGTTGGCTGGAGCATAAATTCAATAT 59.448 34.615 0.20 0.00 44.36 1.28
5296 6791 6.335471 TGGCTGGAGCATAAATTCAATATG 57.665 37.500 0.20 0.00 44.36 1.78
5297 6792 5.244402 TGGCTGGAGCATAAATTCAATATGG 59.756 40.000 0.20 0.00 44.36 2.74
5298 6793 5.244626 GGCTGGAGCATAAATTCAATATGGT 59.755 40.000 0.20 1.00 42.43 3.55
5299 6794 6.434028 GGCTGGAGCATAAATTCAATATGGTA 59.566 38.462 0.20 0.00 40.50 3.25
5300 6795 7.123247 GGCTGGAGCATAAATTCAATATGGTAT 59.877 37.037 0.20 0.00 40.50 2.73
5301 6796 8.526147 GCTGGAGCATAAATTCAATATGGTATT 58.474 33.333 1.35 0.00 40.50 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.141881 ACAGCAGGAATAGACGCCG 59.858 57.895 0.00 0.00 0.00 6.46
8 9 2.182842 GCCGCCACAGCAGGAATAG 61.183 63.158 0.00 0.00 39.83 1.73
10 11 2.599645 CTAGCCGCCACAGCAGGAAT 62.600 60.000 0.00 0.00 39.83 3.01
78 80 9.197306 GGGACCTGACAAAACCTTATTTATAAT 57.803 33.333 0.00 0.00 0.00 1.28
79 81 8.395605 AGGGACCTGACAAAACCTTATTTATAA 58.604 33.333 0.00 0.00 0.00 0.98
80 82 7.935405 AGGGACCTGACAAAACCTTATTTATA 58.065 34.615 0.00 0.00 0.00 0.98
81 83 6.800890 AGGGACCTGACAAAACCTTATTTAT 58.199 36.000 0.00 0.00 0.00 1.40
82 84 6.208840 AGGGACCTGACAAAACCTTATTTA 57.791 37.500 0.00 0.00 0.00 1.40
83 85 5.074746 AGGGACCTGACAAAACCTTATTT 57.925 39.130 0.00 0.00 0.00 1.40
84 86 4.741928 AGGGACCTGACAAAACCTTATT 57.258 40.909 0.00 0.00 0.00 1.40
85 87 5.731678 AGATAGGGACCTGACAAAACCTTAT 59.268 40.000 0.00 0.00 0.00 1.73
86 88 5.098663 AGATAGGGACCTGACAAAACCTTA 58.901 41.667 0.00 0.00 0.00 2.69
87 89 3.916989 AGATAGGGACCTGACAAAACCTT 59.083 43.478 0.00 0.00 0.00 3.50
88 90 3.519913 GAGATAGGGACCTGACAAAACCT 59.480 47.826 0.00 0.00 0.00 3.50
93 95 3.012959 AGGAAGAGATAGGGACCTGACAA 59.987 47.826 0.00 0.00 0.00 3.18
102 104 3.282885 GCCAAAACAGGAAGAGATAGGG 58.717 50.000 0.00 0.00 0.00 3.53
112 114 0.178992 CAGAGTGGGCCAAAACAGGA 60.179 55.000 8.40 0.00 0.00 3.86
115 117 2.151502 TTTCAGAGTGGGCCAAAACA 57.848 45.000 8.40 0.00 0.00 2.83
116 118 2.430694 ACTTTTCAGAGTGGGCCAAAAC 59.569 45.455 8.40 2.32 0.00 2.43
121 123 1.338020 CACAACTTTTCAGAGTGGGCC 59.662 52.381 0.00 0.00 0.00 5.80
184 186 8.595421 TGCACCAATTATTGCAAATGGATATAT 58.405 29.630 22.86 0.63 45.65 0.86
389 391 3.926616 AGCGATAACTAATTCCGGATGG 58.073 45.455 4.15 0.00 0.00 3.51
391 393 4.866508 TGAGCGATAACTAATTCCGGAT 57.133 40.909 4.15 0.00 0.00 4.18
469 564 9.330063 TCAAAAGGATGTATCTAGCACTATTTG 57.670 33.333 0.00 0.00 0.00 2.32
478 573 4.677378 CGTCGCTCAAAAGGATGTATCTAG 59.323 45.833 0.00 0.00 0.00 2.43
493 589 3.842732 TCAAGAATTAGTCGTCGCTCA 57.157 42.857 0.00 0.00 0.00 4.26
596 699 0.378257 ATTCGCCAATCGTGCATGTC 59.622 50.000 5.68 0.00 39.67 3.06
631 735 8.513774 ACAAAAACAAAAGAACAATCTTGCATT 58.486 25.926 0.00 0.00 45.19 3.56
639 743 9.541143 CCCTGTATACAAAAACAAAAGAACAAT 57.459 29.630 7.06 0.00 0.00 2.71
652 756 3.741249 TGAACGTGCCCTGTATACAAAA 58.259 40.909 7.06 0.00 0.00 2.44
659 763 2.779755 ATGATTGAACGTGCCCTGTA 57.220 45.000 0.00 0.00 0.00 2.74
704 808 2.690026 CGTAGGGGGAGATCTGGAAAGA 60.690 54.545 0.00 0.00 0.00 2.52
715 819 1.136500 GACTTAAGCACGTAGGGGGAG 59.864 57.143 1.29 0.00 0.00 4.30
731 843 5.310857 ACACCATCTAAAAAGGAGAGGACTT 59.689 40.000 0.00 0.00 0.00 3.01
753 865 2.125310 CGGCCGGATTACAGCACA 60.125 61.111 20.10 0.00 0.00 4.57
957 1077 3.323979 GGAAGATCGTGGGAGGCTAATAA 59.676 47.826 0.00 0.00 0.00 1.40
1066 1189 3.063084 GAGAGACGGCGAGTGGGT 61.063 66.667 16.62 0.00 0.00 4.51
1196 1322 5.694910 AGACGAACGCAGATTTTCTTTTCTA 59.305 36.000 0.00 0.00 0.00 2.10
1198 1324 4.608882 CAGACGAACGCAGATTTTCTTTTC 59.391 41.667 0.00 0.00 0.00 2.29
1202 1328 2.476619 CACAGACGAACGCAGATTTTCT 59.523 45.455 0.00 0.00 0.00 2.52
1484 1610 6.200808 CGTGCATGCAAGTATATCAAATCAA 58.799 36.000 24.58 0.00 0.00 2.57
1485 1611 5.750650 CGTGCATGCAAGTATATCAAATCA 58.249 37.500 24.58 0.00 0.00 2.57
1486 1612 4.614284 GCGTGCATGCAAGTATATCAAATC 59.386 41.667 29.87 10.23 34.15 2.17
1487 1613 4.276678 AGCGTGCATGCAAGTATATCAAAT 59.723 37.500 31.36 4.12 37.31 2.32
1488 1614 3.627123 AGCGTGCATGCAAGTATATCAAA 59.373 39.130 31.36 0.00 37.31 2.69
1489 1615 3.002553 CAGCGTGCATGCAAGTATATCAA 59.997 43.478 31.36 0.00 37.31 2.57
1847 1979 4.094684 CGATCTCAACCTGTCGCC 57.905 61.111 0.00 0.00 0.00 5.54
1951 2084 2.750166 CCACCACACATATTGGCGTTAA 59.250 45.455 0.00 0.00 37.69 2.01
1959 2092 4.270008 GTTTAGCTCCCACCACACATATT 58.730 43.478 0.00 0.00 0.00 1.28
1961 2094 2.026636 GGTTTAGCTCCCACCACACATA 60.027 50.000 0.00 0.00 0.00 2.29
1963 2096 0.109723 GGTTTAGCTCCCACCACACA 59.890 55.000 0.00 0.00 0.00 3.72
1977 2110 2.281900 GGCGTGTGGGCAGGTTTA 60.282 61.111 0.00 0.00 41.77 2.01
2012 2145 0.537828 ATGCATGCGGTGATATGGCA 60.538 50.000 14.09 0.00 41.48 4.92
2651 2793 7.062906 TCTTTTTGGTTTTCGGCTTAAAAAC 57.937 32.000 11.11 11.11 42.93 2.43
2702 2845 2.498481 CCATCACCACTCATTTTGCCAT 59.502 45.455 0.00 0.00 0.00 4.40
2784 2927 7.775053 AAACCAGTTCATCTAAAAATAGGCA 57.225 32.000 0.00 0.00 0.00 4.75
2945 3088 0.037882 ATAGGCGCATGTCTCCATCG 60.038 55.000 10.83 0.00 0.00 3.84
3012 3155 8.048534 ACCACAATCAAGAGATCTGTAATTTG 57.951 34.615 0.00 3.65 31.90 2.32
3013 3156 7.884877 TGACCACAATCAAGAGATCTGTAATTT 59.115 33.333 0.00 0.00 31.90 1.82
3014 3157 7.397221 TGACCACAATCAAGAGATCTGTAATT 58.603 34.615 0.00 0.00 31.90 1.40
3015 3158 6.950842 TGACCACAATCAAGAGATCTGTAAT 58.049 36.000 0.00 0.00 31.90 1.89
3280 3428 7.620888 AGGAGTGGTCCATTTTTCATATCAAAT 59.379 33.333 0.00 0.00 46.80 2.32
3338 3490 4.628333 CACGGAGTTAATAACGTCAACCAT 59.372 41.667 0.00 0.00 41.61 3.55
3353 3505 7.827729 GGGCCTATTTATATTTATCACGGAGTT 59.172 37.037 0.84 0.00 41.61 3.01
3387 3539 6.426646 TTTTAGCATACATTTTTGTGGGGT 57.573 33.333 0.00 0.00 0.00 4.95
3561 3729 6.759497 AAGGATAATAAACTTCAGCACCAC 57.241 37.500 0.00 0.00 0.00 4.16
3669 3837 4.196193 CGGTCAATTAAATGGAGCCTACA 58.804 43.478 0.00 0.00 0.00 2.74
3678 3846 4.701956 AGGAGCAACGGTCAATTAAATG 57.298 40.909 0.00 0.00 0.00 2.32
3767 3936 6.091577 ACGAATGATGCTAAATCGTGTTGTAA 59.908 34.615 0.00 0.00 44.20 2.41
3772 3941 3.555956 GGACGAATGATGCTAAATCGTGT 59.444 43.478 3.67 0.00 45.67 4.49
3773 3942 3.804325 AGGACGAATGATGCTAAATCGTG 59.196 43.478 3.67 0.00 45.67 4.35
3880 4058 6.474751 GCATCAAGGATTAGATGAAAACTTGC 59.525 38.462 6.60 0.00 43.28 4.01
3991 4171 9.515226 AAATCCAGTACAAACTATCTTAAAGCA 57.485 29.630 0.00 0.00 33.48 3.91
4024 4287 4.469586 ACCAACAACCTGAAAACCAAAGAT 59.530 37.500 0.00 0.00 0.00 2.40
4092 4355 1.565156 TTACAGCAGAAACGCCAGCG 61.565 55.000 11.05 11.05 46.03 5.18
4135 4476 8.814038 AAGATTATTTGTACTGGCTCTCATTT 57.186 30.769 0.00 0.00 0.00 2.32
4137 4478 8.486210 TGTAAGATTATTTGTACTGGCTCTCAT 58.514 33.333 0.00 0.00 0.00 2.90
4235 4576 4.408270 CCAGGATCTTCTTCCTTGATCAGA 59.592 45.833 0.00 0.00 43.88 3.27
4406 4747 0.321653 GGTGCACTCCATTCGGAAGT 60.322 55.000 17.98 0.00 42.21 3.01
4518 4866 2.034124 CCACCTCTGGCCCAATATTTG 58.966 52.381 0.00 0.00 0.00 2.32
4874 6200 3.505293 AGAGCAGTCATTCCAAGCTTTTC 59.495 43.478 0.00 0.00 35.36 2.29
4960 6454 5.184864 TCAAAACCGAATTAACTCCATGCAT 59.815 36.000 0.00 0.00 0.00 3.96
4976 6470 1.011333 AACACCGACAGTCAAAACCG 58.989 50.000 0.41 0.00 0.00 4.44
4978 6472 4.025979 CAGAGTAACACCGACAGTCAAAAC 60.026 45.833 0.41 0.00 0.00 2.43
4989 6483 5.466819 TCTTCATAACACAGAGTAACACCG 58.533 41.667 0.00 0.00 0.00 4.94
5016 6510 3.516300 TGCAAAAGGGATCATGAGCAATT 59.484 39.130 13.85 3.66 0.00 2.32
5044 6538 9.964354 AGCATGAATTTTCCAGCATAGTATATA 57.036 29.630 0.00 0.00 0.00 0.86
5045 6539 8.874744 AGCATGAATTTTCCAGCATAGTATAT 57.125 30.769 0.00 0.00 0.00 0.86
5134 6628 6.611236 TCAGTATCACCAAGAGGATACAATCA 59.389 38.462 12.65 0.00 45.23 2.57
5154 6648 4.002982 CTGCTAAATGCCACAGTTCAGTA 58.997 43.478 0.00 0.00 42.00 2.74
5178 6673 7.982371 AATAGCAGTCACATTTAGTACGTAC 57.018 36.000 18.10 18.10 0.00 3.67
5179 6674 8.245491 TGAAATAGCAGTCACATTTAGTACGTA 58.755 33.333 0.00 0.00 0.00 3.57
5180 6675 7.094631 TGAAATAGCAGTCACATTTAGTACGT 58.905 34.615 0.00 0.00 0.00 3.57
5181 6676 7.520119 TGAAATAGCAGTCACATTTAGTACG 57.480 36.000 0.00 0.00 0.00 3.67
5221 6716 4.892934 GGAGGTGGGCAATATATTTCAACA 59.107 41.667 0.00 0.00 0.00 3.33
5222 6717 4.280929 GGGAGGTGGGCAATATATTTCAAC 59.719 45.833 0.00 0.00 0.00 3.18
5223 6718 4.169856 AGGGAGGTGGGCAATATATTTCAA 59.830 41.667 0.00 0.00 0.00 2.69
5224 6719 3.726859 AGGGAGGTGGGCAATATATTTCA 59.273 43.478 0.00 0.00 0.00 2.69
5225 6720 4.336280 GAGGGAGGTGGGCAATATATTTC 58.664 47.826 0.00 0.00 0.00 2.17
5226 6721 3.076032 GGAGGGAGGTGGGCAATATATTT 59.924 47.826 0.00 0.00 0.00 1.40
5228 6723 2.279173 GGAGGGAGGTGGGCAATATAT 58.721 52.381 0.00 0.00 0.00 0.86
5229 6724 1.060954 TGGAGGGAGGTGGGCAATATA 60.061 52.381 0.00 0.00 0.00 0.86
5230 6725 0.328450 TGGAGGGAGGTGGGCAATAT 60.328 55.000 0.00 0.00 0.00 1.28
5232 6727 1.623686 ATGGAGGGAGGTGGGCAAT 60.624 57.895 0.00 0.00 0.00 3.56
5233 6728 2.204291 ATGGAGGGAGGTGGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
5234 6729 2.692368 GATGGAGGGAGGTGGGCA 60.692 66.667 0.00 0.00 0.00 5.36
5235 6730 2.692368 TGATGGAGGGAGGTGGGC 60.692 66.667 0.00 0.00 0.00 5.36
5236 6731 0.916358 AACTGATGGAGGGAGGTGGG 60.916 60.000 0.00 0.00 0.00 4.61
5238 6733 0.176680 CGAACTGATGGAGGGAGGTG 59.823 60.000 0.00 0.00 0.00 4.00
5239 6734 0.978146 CCGAACTGATGGAGGGAGGT 60.978 60.000 0.00 0.00 0.00 3.85
5240 6735 0.687757 TCCGAACTGATGGAGGGAGG 60.688 60.000 0.00 0.00 0.00 4.30
5241 6736 0.461961 GTCCGAACTGATGGAGGGAG 59.538 60.000 0.00 0.00 34.21 4.30
5242 6737 0.041238 AGTCCGAACTGATGGAGGGA 59.959 55.000 0.00 0.00 34.21 4.20
5243 6738 0.905357 AAGTCCGAACTGATGGAGGG 59.095 55.000 0.00 0.00 35.36 4.30
5244 6739 2.744202 CAAAAGTCCGAACTGATGGAGG 59.256 50.000 0.00 0.00 35.36 4.30
5245 6740 3.403038 ACAAAAGTCCGAACTGATGGAG 58.597 45.455 0.00 0.00 35.36 3.86
5246 6741 3.485463 ACAAAAGTCCGAACTGATGGA 57.515 42.857 0.00 0.00 35.36 3.41
5247 6742 4.935205 TCATACAAAAGTCCGAACTGATGG 59.065 41.667 0.00 0.00 35.36 3.51
5248 6743 5.639506 ACTCATACAAAAGTCCGAACTGATG 59.360 40.000 0.00 0.00 35.36 3.07
5249 6744 5.794894 ACTCATACAAAAGTCCGAACTGAT 58.205 37.500 0.00 0.00 35.36 2.90
5250 6745 5.209818 ACTCATACAAAAGTCCGAACTGA 57.790 39.130 0.00 0.00 35.36 3.41
5251 6746 5.334105 CCAACTCATACAAAAGTCCGAACTG 60.334 44.000 0.00 0.00 35.36 3.16
5252 6747 4.755123 CCAACTCATACAAAAGTCCGAACT 59.245 41.667 0.00 0.00 37.32 3.01
5253 6748 4.612939 GCCAACTCATACAAAAGTCCGAAC 60.613 45.833 0.00 0.00 0.00 3.95
5255 6750 3.071479 GCCAACTCATACAAAAGTCCGA 58.929 45.455 0.00 0.00 0.00 4.55
5256 6751 3.074412 AGCCAACTCATACAAAAGTCCG 58.926 45.455 0.00 0.00 0.00 4.79
5258 6753 4.072131 TCCAGCCAACTCATACAAAAGTC 58.928 43.478 0.00 0.00 0.00 3.01
5259 6754 4.074970 CTCCAGCCAACTCATACAAAAGT 58.925 43.478 0.00 0.00 0.00 2.66
5260 6755 3.119708 GCTCCAGCCAACTCATACAAAAG 60.120 47.826 0.00 0.00 34.31 2.27
5261 6756 2.819608 GCTCCAGCCAACTCATACAAAA 59.180 45.455 0.00 0.00 34.31 2.44
5264 6759 0.983467 TGCTCCAGCCAACTCATACA 59.017 50.000 0.00 0.00 41.18 2.29
5266 6761 4.502105 TTTATGCTCCAGCCAACTCATA 57.498 40.909 0.00 0.00 41.18 2.15
5269 6764 3.696051 TGAATTTATGCTCCAGCCAACTC 59.304 43.478 0.00 0.00 41.18 3.01
5271 6766 4.454728 TTGAATTTATGCTCCAGCCAAC 57.545 40.909 0.00 0.00 41.18 3.77
5273 6768 5.244402 CCATATTGAATTTATGCTCCAGCCA 59.756 40.000 0.00 0.00 41.18 4.75
5274 6769 5.244626 ACCATATTGAATTTATGCTCCAGCC 59.755 40.000 0.00 0.00 41.18 4.85
5275 6770 6.336842 ACCATATTGAATTTATGCTCCAGC 57.663 37.500 0.00 0.00 42.50 4.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.