Multiple sequence alignment - TraesCS5D01G173700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G173700 chr5D 100.000 5413 0 0 1 5413 271898956 271904368 0.000000e+00 9997.0
1 TraesCS5D01G173700 chr5D 90.783 651 49 6 2839 3482 298070745 298070099 0.000000e+00 859.0
2 TraesCS5D01G173700 chr5D 86.744 347 19 8 4989 5309 271914149 271914494 1.430000e-95 361.0
3 TraesCS5D01G173700 chr5D 96.196 184 7 0 1 184 271880281 271880464 8.810000e-78 302.0
4 TraesCS5D01G173700 chr5D 84.914 232 21 6 4769 4987 271913859 271914089 7.060000e-54 222.0
5 TraesCS5D01G173700 chr5D 86.957 69 5 4 5290 5358 483355361 483355297 2.090000e-09 75.0
6 TraesCS5D01G173700 chr5D 86.957 69 5 4 5290 5358 483356798 483356734 2.090000e-09 75.0
7 TraesCS5D01G173700 chr5D 86.957 69 5 4 5290 5358 483358239 483358175 2.090000e-09 75.0
8 TraesCS5D01G173700 chr5A 93.146 1707 66 24 1149 2834 361709402 361711078 0.000000e+00 2457.0
9 TraesCS5D01G173700 chr5A 95.608 979 36 5 3488 4463 361711076 361712050 0.000000e+00 1563.0
10 TraesCS5D01G173700 chr5A 88.222 866 29 25 314 1135 361708521 361709357 0.000000e+00 966.0
11 TraesCS5D01G173700 chr5A 95.135 185 9 0 1 185 616510327 616510511 5.300000e-75 292.0
12 TraesCS5D01G173700 chr5A 91.139 158 10 2 4605 4758 361712692 361712849 1.530000e-50 211.0
13 TraesCS5D01G173700 chr5A 90.244 123 3 7 4493 4613 361712461 361712576 9.390000e-33 152.0
14 TraesCS5D01G173700 chr5A 84.270 89 9 5 5305 5393 553545199 553545282 1.250000e-11 82.4
15 TraesCS5D01G173700 chr5A 83.333 90 10 5 5304 5393 553543716 553543800 1.620000e-10 78.7
16 TraesCS5D01G173700 chr5A 100.000 39 0 0 275 313 361708466 361708504 7.520000e-09 73.1
17 TraesCS5D01G173700 chr5B 94.001 1517 59 7 3488 4987 308112039 308113540 0.000000e+00 2268.0
18 TraesCS5D01G173700 chr5B 93.880 1487 38 16 900 2358 308110068 308111529 0.000000e+00 2193.0
19 TraesCS5D01G173700 chr5B 95.029 523 14 2 315 837 308109255 308109765 0.000000e+00 811.0
20 TraesCS5D01G173700 chr5B 96.491 456 11 3 2383 2834 308111587 308112041 0.000000e+00 749.0
21 TraesCS5D01G173700 chr5B 89.532 449 20 9 4984 5413 308113709 308114149 1.330000e-150 544.0
22 TraesCS5D01G173700 chr5B 88.785 321 18 12 5015 5319 308115270 308115588 1.420000e-100 377.0
23 TraesCS5D01G173700 chr5B 97.436 39 1 0 275 313 308109179 308109217 3.500000e-07 67.6
24 TraesCS5D01G173700 chr3D 91.324 657 48 4 2836 3483 560048266 560048922 0.000000e+00 889.0
25 TraesCS5D01G173700 chr3D 91.131 654 48 6 2837 3482 374957149 374957800 0.000000e+00 878.0
26 TraesCS5D01G173700 chr3D 90.951 652 50 5 2837 3480 49563647 49564297 0.000000e+00 869.0
27 TraesCS5D01G173700 chr3D 96.774 31 1 0 3631 3661 602807018 602807048 1.000000e-02 52.8
28 TraesCS5D01G173700 chr2D 91.271 653 48 5 2838 3482 388274905 388274254 0.000000e+00 881.0
29 TraesCS5D01G173700 chr2D 96.196 184 7 0 1 184 447226966 447226783 8.810000e-78 302.0
30 TraesCS5D01G173700 chr2D 83.117 77 9 3 1046 1120 596029563 596029637 3.500000e-07 67.6
31 TraesCS5D01G173700 chr7D 91.271 653 45 6 2838 3482 421832666 421832018 0.000000e+00 880.0
32 TraesCS5D01G173700 chr7D 95.652 184 8 0 1 184 107010147 107010330 4.100000e-76 296.0
33 TraesCS5D01G173700 chr3A 90.979 654 49 8 2839 3485 51282373 51281723 0.000000e+00 872.0
34 TraesCS5D01G173700 chr4D 90.951 652 49 7 2839 3482 197007408 197006759 0.000000e+00 869.0
35 TraesCS5D01G173700 chr7A 90.798 652 48 6 2839 3482 721930670 721930023 0.000000e+00 861.0
36 TraesCS5D01G173700 chr7A 88.608 316 20 8 5017 5319 9369904 9369592 2.380000e-98 370.0
37 TraesCS5D01G173700 chr7A 83.133 83 11 2 5311 5393 93914591 93914670 7.520000e-09 73.1
38 TraesCS5D01G173700 chr1A 96.739 184 6 0 1 184 297829417 297829600 1.890000e-79 307.0
39 TraesCS5D01G173700 chr1A 95.161 186 9 0 1 186 534444207 534444392 1.470000e-75 294.0
40 TraesCS5D01G173700 chr1A 95.604 182 8 0 1 182 534438763 534438944 5.300000e-75 292.0
41 TraesCS5D01G173700 chr2A 95.652 184 8 0 1 184 550692156 550691973 4.100000e-76 296.0
42 TraesCS5D01G173700 chr2A 88.732 71 6 2 5304 5374 460329528 460329460 9.660000e-13 86.1
43 TraesCS5D01G173700 chr2A 81.319 91 12 4 1032 1120 729688087 729688174 9.730000e-08 69.4
44 TraesCS5D01G173700 chr2A 88.235 51 4 2 3611 3659 16335190 16335240 5.860000e-05 60.2
45 TraesCS5D01G173700 chr6D 95.109 184 9 0 1 184 31773552 31773735 1.910000e-74 291.0
46 TraesCS5D01G173700 chr2B 81.720 93 13 4 5302 5393 636564718 636564807 2.090000e-09 75.0
47 TraesCS5D01G173700 chr2B 83.117 77 9 3 1046 1120 724410308 724410382 3.500000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G173700 chr5D 271898956 271904368 5412 False 9997.000000 9997 100.000000 1 5413 1 chr5D.!!$F2 5412
1 TraesCS5D01G173700 chr5D 298070099 298070745 646 True 859.000000 859 90.783000 2839 3482 1 chr5D.!!$R1 643
2 TraesCS5D01G173700 chr5D 271913859 271914494 635 False 291.500000 361 85.829000 4769 5309 2 chr5D.!!$F3 540
3 TraesCS5D01G173700 chr5A 361708466 361712849 4383 False 903.683333 2457 93.059833 275 4758 6 chr5A.!!$F2 4483
4 TraesCS5D01G173700 chr5B 308109179 308115588 6409 False 1001.371429 2268 93.593429 275 5413 7 chr5B.!!$F1 5138
5 TraesCS5D01G173700 chr3D 560048266 560048922 656 False 889.000000 889 91.324000 2836 3483 1 chr3D.!!$F3 647
6 TraesCS5D01G173700 chr3D 374957149 374957800 651 False 878.000000 878 91.131000 2837 3482 1 chr3D.!!$F2 645
7 TraesCS5D01G173700 chr3D 49563647 49564297 650 False 869.000000 869 90.951000 2837 3480 1 chr3D.!!$F1 643
8 TraesCS5D01G173700 chr2D 388274254 388274905 651 True 881.000000 881 91.271000 2838 3482 1 chr2D.!!$R1 644
9 TraesCS5D01G173700 chr7D 421832018 421832666 648 True 880.000000 880 91.271000 2838 3482 1 chr7D.!!$R1 644
10 TraesCS5D01G173700 chr3A 51281723 51282373 650 True 872.000000 872 90.979000 2839 3485 1 chr3A.!!$R1 646
11 TraesCS5D01G173700 chr4D 197006759 197007408 649 True 869.000000 869 90.951000 2839 3482 1 chr4D.!!$R1 643
12 TraesCS5D01G173700 chr7A 721930023 721930670 647 True 861.000000 861 90.798000 2839 3482 1 chr7A.!!$R2 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 925 0.032540 CAACCAAGGCAAGGCAAGAC 59.967 55.000 0.0 0.00 0.0 3.01 F
909 1204 0.115152 TCACCCTTCCTCTCTCTGCA 59.885 55.000 0.0 0.00 0.0 4.41 F
1612 1999 2.019408 CGACGACATTCACGCCACA 61.019 57.895 0.0 0.00 0.0 4.17 F
2733 3176 3.088532 TGCCAGTACAATTGATGGAACC 58.911 45.455 23.9 12.44 34.6 3.62 F
2995 3441 0.319083 ACGGATACAAAGCGGACACA 59.681 50.000 0.0 0.00 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 2116 0.868406 GACAGACCCAAGTTGAAGCG 59.132 55.0 3.87 0.0 0.00 4.68 R
2835 3281 2.100252 CGCTCCGTTTTCATCCCTACTA 59.900 50.0 0.00 0.0 0.00 1.82 R
2976 3422 0.319083 TGTGTCCGCTTTGTATCCGT 59.681 50.0 0.00 0.0 0.00 4.69 R
3785 4247 0.105964 TCGGCTGTGCAACTTGTACT 59.894 50.0 10.83 0.0 38.04 2.73 R
4972 6083 0.248012 AACAGACACGGACACACACA 59.752 50.0 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.981859 ATCGCTTATCCCTTTCGTGT 57.018 45.000 0.00 0.00 0.00 4.49
20 21 2.754946 TCGCTTATCCCTTTCGTGTT 57.245 45.000 0.00 0.00 0.00 3.32
21 22 3.048337 TCGCTTATCCCTTTCGTGTTT 57.952 42.857 0.00 0.00 0.00 2.83
22 23 2.997986 TCGCTTATCCCTTTCGTGTTTC 59.002 45.455 0.00 0.00 0.00 2.78
23 24 3.000727 CGCTTATCCCTTTCGTGTTTCT 58.999 45.455 0.00 0.00 0.00 2.52
24 25 3.435671 CGCTTATCCCTTTCGTGTTTCTT 59.564 43.478 0.00 0.00 0.00 2.52
25 26 4.083484 CGCTTATCCCTTTCGTGTTTCTTT 60.083 41.667 0.00 0.00 0.00 2.52
26 27 5.391449 GCTTATCCCTTTCGTGTTTCTTTC 58.609 41.667 0.00 0.00 0.00 2.62
27 28 5.181433 GCTTATCCCTTTCGTGTTTCTTTCT 59.819 40.000 0.00 0.00 0.00 2.52
28 29 6.554334 TTATCCCTTTCGTGTTTCTTTCTG 57.446 37.500 0.00 0.00 0.00 3.02
29 30 3.881220 TCCCTTTCGTGTTTCTTTCTGT 58.119 40.909 0.00 0.00 0.00 3.41
30 31 4.266714 TCCCTTTCGTGTTTCTTTCTGTT 58.733 39.130 0.00 0.00 0.00 3.16
31 32 4.095782 TCCCTTTCGTGTTTCTTTCTGTTG 59.904 41.667 0.00 0.00 0.00 3.33
32 33 4.142469 CCCTTTCGTGTTTCTTTCTGTTGT 60.142 41.667 0.00 0.00 0.00 3.32
33 34 5.065474 CCCTTTCGTGTTTCTTTCTGTTGTA 59.935 40.000 0.00 0.00 0.00 2.41
34 35 6.192360 CCTTTCGTGTTTCTTTCTGTTGTAG 58.808 40.000 0.00 0.00 0.00 2.74
35 36 4.789095 TCGTGTTTCTTTCTGTTGTAGC 57.211 40.909 0.00 0.00 0.00 3.58
36 37 4.185394 TCGTGTTTCTTTCTGTTGTAGCA 58.815 39.130 0.00 0.00 0.00 3.49
37 38 4.270084 TCGTGTTTCTTTCTGTTGTAGCAG 59.730 41.667 0.00 0.00 37.81 4.24
38 39 4.034048 CGTGTTTCTTTCTGTTGTAGCAGT 59.966 41.667 0.00 0.00 37.70 4.40
39 40 5.233476 CGTGTTTCTTTCTGTTGTAGCAGTA 59.767 40.000 0.00 0.00 37.70 2.74
40 41 6.419771 GTGTTTCTTTCTGTTGTAGCAGTAC 58.580 40.000 0.00 0.00 37.70 2.73
41 42 6.258068 GTGTTTCTTTCTGTTGTAGCAGTACT 59.742 38.462 0.00 0.00 37.70 2.73
42 43 7.437267 GTGTTTCTTTCTGTTGTAGCAGTACTA 59.563 37.037 0.00 0.00 37.70 1.82
43 44 7.652105 TGTTTCTTTCTGTTGTAGCAGTACTAG 59.348 37.037 0.00 0.00 37.70 2.57
44 45 5.710984 TCTTTCTGTTGTAGCAGTACTAGC 58.289 41.667 0.00 1.88 37.70 3.42
45 46 3.759527 TCTGTTGTAGCAGTACTAGCG 57.240 47.619 0.00 0.00 37.70 4.26
46 47 3.340928 TCTGTTGTAGCAGTACTAGCGA 58.659 45.455 0.00 0.00 37.70 4.93
47 48 3.945921 TCTGTTGTAGCAGTACTAGCGAT 59.054 43.478 0.00 0.00 37.70 4.58
48 49 5.121105 TCTGTTGTAGCAGTACTAGCGATA 58.879 41.667 0.00 0.00 37.70 2.92
49 50 5.763698 TCTGTTGTAGCAGTACTAGCGATAT 59.236 40.000 0.00 0.00 37.70 1.63
50 51 5.758924 TGTTGTAGCAGTACTAGCGATATG 58.241 41.667 0.00 0.00 37.01 1.78
51 52 4.421033 TGTAGCAGTACTAGCGATATGC 57.579 45.455 0.00 0.00 46.98 3.14
66 67 6.633668 GCGATATGCGTAGATGTTTCTATT 57.366 37.500 0.00 0.00 43.41 1.73
67 68 7.736031 GCGATATGCGTAGATGTTTCTATTA 57.264 36.000 0.00 0.00 43.41 0.98
68 69 8.341477 GCGATATGCGTAGATGTTTCTATTAT 57.659 34.615 0.00 0.00 43.41 1.28
69 70 8.262588 GCGATATGCGTAGATGTTTCTATTATG 58.737 37.037 0.00 0.00 43.41 1.90
70 71 9.290483 CGATATGCGTAGATGTTTCTATTATGT 57.710 33.333 0.00 0.00 36.84 2.29
72 73 6.525121 TGCGTAGATGTTTCTATTATGTGC 57.475 37.500 0.00 0.00 36.84 4.57
73 74 5.174943 TGCGTAGATGTTTCTATTATGTGCG 59.825 40.000 0.00 0.00 36.84 5.34
74 75 5.175126 GCGTAGATGTTTCTATTATGTGCGT 59.825 40.000 0.00 0.00 36.84 5.24
75 76 6.361481 GCGTAGATGTTTCTATTATGTGCGTA 59.639 38.462 0.00 0.00 36.84 4.42
76 77 7.409449 GCGTAGATGTTTCTATTATGTGCGTAG 60.409 40.741 0.00 0.00 36.84 3.51
77 78 7.590322 CGTAGATGTTTCTATTATGTGCGTAGT 59.410 37.037 0.00 0.00 36.84 2.73
78 79 9.888878 GTAGATGTTTCTATTATGTGCGTAGTA 57.111 33.333 0.00 0.00 36.84 1.82
79 80 8.798748 AGATGTTTCTATTATGTGCGTAGTAC 57.201 34.615 0.00 0.00 45.46 2.73
88 89 2.279582 GTGCGTAGTACATGCTCTGT 57.720 50.000 0.38 0.00 44.35 3.41
89 90 2.607187 GTGCGTAGTACATGCTCTGTT 58.393 47.619 0.38 0.00 44.35 3.16
90 91 3.766151 GTGCGTAGTACATGCTCTGTTA 58.234 45.455 0.38 0.00 44.35 2.41
91 92 3.791887 GTGCGTAGTACATGCTCTGTTAG 59.208 47.826 0.38 0.00 44.35 2.34
92 93 3.692593 TGCGTAGTACATGCTCTGTTAGA 59.307 43.478 0.38 0.00 40.09 2.10
93 94 4.338400 TGCGTAGTACATGCTCTGTTAGAT 59.662 41.667 0.38 0.00 40.09 1.98
94 95 4.912766 GCGTAGTACATGCTCTGTTAGATC 59.087 45.833 0.38 0.00 39.39 2.75
95 96 5.140872 CGTAGTACATGCTCTGTTAGATCG 58.859 45.833 0.38 0.00 39.39 3.69
96 97 5.277393 CGTAGTACATGCTCTGTTAGATCGT 60.277 44.000 0.38 0.00 39.39 3.73
97 98 6.073927 CGTAGTACATGCTCTGTTAGATCGTA 60.074 42.308 0.38 0.00 39.39 3.43
98 99 6.694877 AGTACATGCTCTGTTAGATCGTAA 57.305 37.500 0.00 0.00 39.39 3.18
99 100 7.278461 AGTACATGCTCTGTTAGATCGTAAT 57.722 36.000 0.00 0.00 39.39 1.89
100 101 7.364200 AGTACATGCTCTGTTAGATCGTAATC 58.636 38.462 0.00 0.00 39.39 1.75
101 102 6.149129 ACATGCTCTGTTAGATCGTAATCA 57.851 37.500 0.00 0.00 32.90 2.57
102 103 6.212235 ACATGCTCTGTTAGATCGTAATCAG 58.788 40.000 0.00 0.00 32.90 2.90
103 104 5.836821 TGCTCTGTTAGATCGTAATCAGT 57.163 39.130 0.00 0.00 34.07 3.41
104 105 5.582550 TGCTCTGTTAGATCGTAATCAGTG 58.417 41.667 0.00 0.00 34.07 3.66
105 106 5.125578 TGCTCTGTTAGATCGTAATCAGTGT 59.874 40.000 0.00 0.00 34.07 3.55
106 107 5.457148 GCTCTGTTAGATCGTAATCAGTGTG 59.543 44.000 0.00 0.00 34.07 3.82
107 108 6.510879 TCTGTTAGATCGTAATCAGTGTGT 57.489 37.500 0.00 0.00 34.07 3.72
108 109 6.920817 TCTGTTAGATCGTAATCAGTGTGTT 58.079 36.000 0.00 0.00 34.07 3.32
109 110 8.047413 TCTGTTAGATCGTAATCAGTGTGTTA 57.953 34.615 0.00 0.00 34.07 2.41
110 111 8.683615 TCTGTTAGATCGTAATCAGTGTGTTAT 58.316 33.333 0.00 0.00 34.07 1.89
111 112 8.851960 TGTTAGATCGTAATCAGTGTGTTATC 57.148 34.615 0.00 0.00 34.07 1.75
112 113 8.463607 TGTTAGATCGTAATCAGTGTGTTATCA 58.536 33.333 0.00 0.00 34.07 2.15
113 114 9.297586 GTTAGATCGTAATCAGTGTGTTATCAA 57.702 33.333 0.00 0.00 34.07 2.57
115 116 8.357796 AGATCGTAATCAGTGTGTTATCAATG 57.642 34.615 0.00 0.00 34.07 2.82
116 117 7.981789 AGATCGTAATCAGTGTGTTATCAATGT 59.018 33.333 0.00 0.00 35.37 2.71
117 118 7.899178 TCGTAATCAGTGTGTTATCAATGTT 57.101 32.000 0.00 0.00 35.37 2.71
118 119 7.738345 TCGTAATCAGTGTGTTATCAATGTTG 58.262 34.615 0.00 0.00 35.37 3.33
119 120 7.386573 TCGTAATCAGTGTGTTATCAATGTTGT 59.613 33.333 0.00 0.00 35.37 3.32
120 121 7.688167 CGTAATCAGTGTGTTATCAATGTTGTC 59.312 37.037 0.00 0.00 35.37 3.18
121 122 5.940192 TCAGTGTGTTATCAATGTTGTCC 57.060 39.130 0.00 0.00 35.37 4.02
122 123 5.372373 TCAGTGTGTTATCAATGTTGTCCA 58.628 37.500 0.00 0.00 35.37 4.02
123 124 6.003326 TCAGTGTGTTATCAATGTTGTCCAT 58.997 36.000 0.00 0.00 35.37 3.41
124 125 7.164803 TCAGTGTGTTATCAATGTTGTCCATA 58.835 34.615 0.00 0.00 35.37 2.74
125 126 7.828717 TCAGTGTGTTATCAATGTTGTCCATAT 59.171 33.333 0.00 0.00 35.37 1.78
126 127 8.124823 CAGTGTGTTATCAATGTTGTCCATATC 58.875 37.037 0.00 0.00 31.97 1.63
127 128 7.828717 AGTGTGTTATCAATGTTGTCCATATCA 59.171 33.333 0.00 0.00 31.97 2.15
128 129 8.623903 GTGTGTTATCAATGTTGTCCATATCAT 58.376 33.333 0.00 0.00 31.97 2.45
129 130 8.623030 TGTGTTATCAATGTTGTCCATATCATG 58.377 33.333 0.00 0.00 31.97 3.07
130 131 7.592533 GTGTTATCAATGTTGTCCATATCATGC 59.407 37.037 0.00 0.00 31.97 4.06
131 132 7.503230 TGTTATCAATGTTGTCCATATCATGCT 59.497 33.333 0.00 0.00 31.97 3.79
132 133 6.570672 ATCAATGTTGTCCATATCATGCTC 57.429 37.500 0.00 0.00 31.97 4.26
133 134 5.438833 TCAATGTTGTCCATATCATGCTCA 58.561 37.500 0.00 0.00 31.97 4.26
134 135 6.066032 TCAATGTTGTCCATATCATGCTCAT 58.934 36.000 0.00 0.00 31.97 2.90
135 136 5.959618 ATGTTGTCCATATCATGCTCATG 57.040 39.130 3.55 3.55 34.42 3.07
136 137 6.016610 CAATGTTGTCCATATCATGCTCATGA 60.017 38.462 14.13 14.13 41.51 3.07
188 189 7.582435 AACTGTCTGTTTACTTATCATCGTG 57.418 36.000 0.00 0.00 34.84 4.35
189 190 6.920817 ACTGTCTGTTTACTTATCATCGTGA 58.079 36.000 0.00 0.00 0.00 4.35
190 191 7.375834 ACTGTCTGTTTACTTATCATCGTGAA 58.624 34.615 0.00 0.00 0.00 3.18
191 192 7.328737 ACTGTCTGTTTACTTATCATCGTGAAC 59.671 37.037 0.00 0.00 32.30 3.18
192 193 7.149307 TGTCTGTTTACTTATCATCGTGAACA 58.851 34.615 0.00 0.00 37.31 3.18
193 194 7.817478 TGTCTGTTTACTTATCATCGTGAACAT 59.183 33.333 0.00 0.00 38.42 2.71
194 195 9.297586 GTCTGTTTACTTATCATCGTGAACATA 57.702 33.333 0.00 0.00 38.42 2.29
197 198 9.256477 TGTTTACTTATCATCGTGAACATATCC 57.744 33.333 0.00 0.00 35.55 2.59
198 199 8.425491 GTTTACTTATCATCGTGAACATATCCG 58.575 37.037 0.00 0.00 32.06 4.18
199 200 6.085555 ACTTATCATCGTGAACATATCCGT 57.914 37.500 0.00 0.00 0.00 4.69
200 201 6.150318 ACTTATCATCGTGAACATATCCGTC 58.850 40.000 0.00 0.00 0.00 4.79
201 202 3.364889 TCATCGTGAACATATCCGTCC 57.635 47.619 0.00 0.00 0.00 4.79
202 203 2.051423 CATCGTGAACATATCCGTCCG 58.949 52.381 0.00 0.00 0.00 4.79
203 204 0.382873 TCGTGAACATATCCGTCCGG 59.617 55.000 0.00 0.00 0.00 5.14
204 205 1.213094 CGTGAACATATCCGTCCGGC 61.213 60.000 0.00 0.00 34.68 6.13
205 206 0.179094 GTGAACATATCCGTCCGGCA 60.179 55.000 0.00 0.00 34.68 5.69
206 207 0.179094 TGAACATATCCGTCCGGCAC 60.179 55.000 0.00 0.00 34.68 5.01
207 208 0.878961 GAACATATCCGTCCGGCACC 60.879 60.000 0.00 0.00 34.68 5.01
208 209 1.618876 AACATATCCGTCCGGCACCA 61.619 55.000 0.00 0.00 34.68 4.17
209 210 1.594293 CATATCCGTCCGGCACCAC 60.594 63.158 0.00 0.00 34.68 4.16
210 211 3.146726 ATATCCGTCCGGCACCACG 62.147 63.158 6.44 6.44 35.72 4.94
215 216 4.612412 GTCCGGCACCACGTTGGA 62.612 66.667 10.46 0.00 40.96 3.53
216 217 3.632080 TCCGGCACCACGTTGGAT 61.632 61.111 10.46 0.00 40.96 3.41
217 218 3.430862 CCGGCACCACGTTGGATG 61.431 66.667 10.46 6.63 40.96 3.51
218 219 4.101790 CGGCACCACGTTGGATGC 62.102 66.667 10.46 13.73 40.96 3.91
219 220 2.672996 GGCACCACGTTGGATGCT 60.673 61.111 19.69 0.00 40.96 3.79
220 221 1.376683 GGCACCACGTTGGATGCTA 60.377 57.895 19.69 0.00 40.96 3.49
221 222 0.958382 GGCACCACGTTGGATGCTAA 60.958 55.000 19.69 0.00 40.96 3.09
222 223 0.878416 GCACCACGTTGGATGCTAAA 59.122 50.000 10.46 0.00 40.96 1.85
223 224 1.135689 GCACCACGTTGGATGCTAAAG 60.136 52.381 10.46 0.00 40.96 1.85
224 225 2.151202 CACCACGTTGGATGCTAAAGT 58.849 47.619 10.46 0.00 40.96 2.66
225 226 2.552315 CACCACGTTGGATGCTAAAGTT 59.448 45.455 10.46 0.00 40.96 2.66
226 227 2.552315 ACCACGTTGGATGCTAAAGTTG 59.448 45.455 10.46 0.00 40.96 3.16
227 228 2.811431 CCACGTTGGATGCTAAAGTTGA 59.189 45.455 0.00 0.00 40.96 3.18
228 229 3.440173 CCACGTTGGATGCTAAAGTTGAT 59.560 43.478 0.00 0.00 40.96 2.57
229 230 4.437390 CCACGTTGGATGCTAAAGTTGATC 60.437 45.833 0.00 0.00 40.96 2.92
230 231 3.689649 ACGTTGGATGCTAAAGTTGATCC 59.310 43.478 0.00 0.00 35.80 3.36
231 232 3.242413 CGTTGGATGCTAAAGTTGATCCG 60.242 47.826 0.00 0.00 37.75 4.18
232 233 2.917933 TGGATGCTAAAGTTGATCCGG 58.082 47.619 0.00 0.00 37.75 5.14
233 234 2.222027 GGATGCTAAAGTTGATCCGGG 58.778 52.381 0.00 0.00 0.00 5.73
234 235 1.604278 GATGCTAAAGTTGATCCGGGC 59.396 52.381 0.00 0.00 0.00 6.13
235 236 0.326595 TGCTAAAGTTGATCCGGGCA 59.673 50.000 0.00 0.00 0.00 5.36
236 237 0.733150 GCTAAAGTTGATCCGGGCAC 59.267 55.000 0.00 0.00 0.00 5.01
237 238 1.679032 GCTAAAGTTGATCCGGGCACT 60.679 52.381 0.00 0.00 0.00 4.40
238 239 2.009774 CTAAAGTTGATCCGGGCACTG 58.990 52.381 0.00 0.00 0.00 3.66
239 240 0.110486 AAAGTTGATCCGGGCACTGT 59.890 50.000 0.00 0.00 0.00 3.55
240 241 0.606401 AAGTTGATCCGGGCACTGTG 60.606 55.000 0.00 2.76 0.00 3.66
241 242 2.040544 GTTGATCCGGGCACTGTGG 61.041 63.158 10.21 0.00 0.00 4.17
242 243 2.525124 TTGATCCGGGCACTGTGGT 61.525 57.895 10.21 0.00 0.00 4.16
243 244 2.125106 GATCCGGGCACTGTGGTC 60.125 66.667 10.21 0.00 0.00 4.02
244 245 3.682292 GATCCGGGCACTGTGGTCC 62.682 68.421 10.21 2.88 0.00 4.46
247 248 3.625897 CGGGCACTGTGGTCCAGA 61.626 66.667 10.21 0.00 44.49 3.86
248 249 2.032681 GGGCACTGTGGTCCAGAC 59.967 66.667 10.21 0.00 44.49 3.51
249 250 2.818169 GGGCACTGTGGTCCAGACA 61.818 63.158 10.21 0.00 44.49 3.41
250 251 1.376466 GGCACTGTGGTCCAGACAT 59.624 57.895 10.21 0.00 44.49 3.06
251 252 0.250901 GGCACTGTGGTCCAGACATT 60.251 55.000 10.21 0.00 44.49 2.71
252 253 1.609208 GCACTGTGGTCCAGACATTT 58.391 50.000 10.21 0.00 44.49 2.32
253 254 2.552155 GGCACTGTGGTCCAGACATTTA 60.552 50.000 10.21 0.00 44.49 1.40
254 255 2.484264 GCACTGTGGTCCAGACATTTAC 59.516 50.000 10.21 0.00 44.49 2.01
255 256 3.807209 GCACTGTGGTCCAGACATTTACT 60.807 47.826 10.21 0.00 44.49 2.24
256 257 4.389374 CACTGTGGTCCAGACATTTACTT 58.611 43.478 0.00 0.00 44.49 2.24
257 258 5.547465 CACTGTGGTCCAGACATTTACTTA 58.453 41.667 0.00 0.00 44.49 2.24
258 259 5.408604 CACTGTGGTCCAGACATTTACTTAC 59.591 44.000 0.00 0.00 44.49 2.34
259 260 4.562082 TGTGGTCCAGACATTTACTTACG 58.438 43.478 0.00 0.00 0.00 3.18
260 261 3.370061 GTGGTCCAGACATTTACTTACGC 59.630 47.826 0.00 0.00 0.00 4.42
261 262 3.259876 TGGTCCAGACATTTACTTACGCT 59.740 43.478 0.00 0.00 0.00 5.07
262 263 4.251268 GGTCCAGACATTTACTTACGCTT 58.749 43.478 0.00 0.00 0.00 4.68
263 264 4.694037 GGTCCAGACATTTACTTACGCTTT 59.306 41.667 0.00 0.00 0.00 3.51
264 265 5.390567 GGTCCAGACATTTACTTACGCTTTG 60.391 44.000 0.00 0.00 0.00 2.77
265 266 4.153475 TCCAGACATTTACTTACGCTTTGC 59.847 41.667 0.00 0.00 0.00 3.68
340 377 4.825422 AGTACATGTGACTGAGTTGGATG 58.175 43.478 9.11 0.00 0.00 3.51
418 463 1.805869 CTTGAAGACTGACTGGGCTG 58.194 55.000 0.00 0.00 0.00 4.85
465 510 2.908940 CGCCATCCATTGCTCCCC 60.909 66.667 0.00 0.00 0.00 4.81
632 677 0.398098 ATACCCCGTCCGTCCATTCT 60.398 55.000 0.00 0.00 0.00 2.40
658 703 4.785512 CAACTCCGCTCGCTCGCT 62.786 66.667 0.00 0.00 0.00 4.93
659 704 4.484258 AACTCCGCTCGCTCGCTC 62.484 66.667 0.00 0.00 0.00 5.03
702 747 2.511637 CTCTGCCTTAAATCCCCTTCCT 59.488 50.000 0.00 0.00 0.00 3.36
875 921 0.106268 TCTTCAACCAAGGCAAGGCA 60.106 50.000 0.00 0.00 32.22 4.75
876 922 0.752054 CTTCAACCAAGGCAAGGCAA 59.248 50.000 0.00 0.00 0.00 4.52
877 923 0.752054 TTCAACCAAGGCAAGGCAAG 59.248 50.000 0.00 0.00 0.00 4.01
878 924 0.106268 TCAACCAAGGCAAGGCAAGA 60.106 50.000 0.00 0.00 0.00 3.02
879 925 0.032540 CAACCAAGGCAAGGCAAGAC 59.967 55.000 0.00 0.00 0.00 3.01
894 940 2.552743 GCAAGACAAGGTAGGTTTCACC 59.447 50.000 0.00 0.00 38.99 4.02
909 1204 0.115152 TCACCCTTCCTCTCTCTGCA 59.885 55.000 0.00 0.00 0.00 4.41
955 1250 4.018779 TCTTCCCCGGTTCTTGTGATTATT 60.019 41.667 0.00 0.00 0.00 1.40
956 1251 3.881220 TCCCCGGTTCTTGTGATTATTC 58.119 45.455 0.00 0.00 0.00 1.75
962 1260 5.006746 CCGGTTCTTGTGATTATTCAGTAGC 59.993 44.000 0.00 0.00 30.85 3.58
989 1287 3.803778 GTGAAGCCAACTGGTTTGATTTG 59.196 43.478 2.20 0.00 38.80 2.32
1004 1334 3.264947 TGATTTGCGTTCAGAGGATGAG 58.735 45.455 0.00 0.00 39.68 2.90
1209 1579 2.999355 CTCTAGTGCCTTCTGTTTGCTC 59.001 50.000 0.00 0.00 0.00 4.26
1230 1601 5.006165 GCTCGATTCACCTCTTTTACAGATG 59.994 44.000 0.00 0.00 0.00 2.90
1311 1688 2.047274 CCTGTCGGTCGGCATGTT 60.047 61.111 0.00 0.00 0.00 2.71
1555 1939 2.471749 CGGTTTTTCAGACATCGTACGC 60.472 50.000 11.24 0.00 0.00 4.42
1604 1991 9.564041 GTTAATCATGTAATAACGACGACATTC 57.436 33.333 0.00 0.00 30.13 2.67
1605 1992 7.764695 AATCATGTAATAACGACGACATTCA 57.235 32.000 0.00 2.20 30.13 2.57
1606 1993 6.563398 TCATGTAATAACGACGACATTCAC 57.437 37.500 0.00 1.60 30.13 3.18
1607 1994 5.228427 TCATGTAATAACGACGACATTCACG 59.772 40.000 0.00 0.00 30.13 4.35
1608 1995 3.301379 TGTAATAACGACGACATTCACGC 59.699 43.478 0.00 0.00 0.00 5.34
1612 1999 2.019408 CGACGACATTCACGCCACA 61.019 57.895 0.00 0.00 0.00 4.17
1729 2116 3.366374 CCCTTCATCTCCAAAGCGTTTTC 60.366 47.826 0.00 0.00 0.00 2.29
2334 2726 7.617041 AAAAGAACCTGACTAGTATGATTGC 57.383 36.000 0.00 0.00 0.00 3.56
2566 3009 6.045106 AGTCCCATAAATTAATCCCGTATGGT 59.955 38.462 17.56 5.64 39.64 3.55
2733 3176 3.088532 TGCCAGTACAATTGATGGAACC 58.911 45.455 23.90 12.44 34.60 3.62
2930 3376 4.002906 AGCGGAAACAGATACAGAAACA 57.997 40.909 0.00 0.00 0.00 2.83
2995 3441 0.319083 ACGGATACAAAGCGGACACA 59.681 50.000 0.00 0.00 0.00 3.72
3009 3455 3.138304 CGGACACAGAAACAGAAATGGA 58.862 45.455 0.00 0.00 0.00 3.41
3050 3498 7.468141 AAAACCCTTGAATCATAGAGAAACC 57.532 36.000 0.00 0.00 0.00 3.27
3055 3503 5.945784 CCTTGAATCATAGAGAAACCCACAA 59.054 40.000 0.00 0.00 0.00 3.33
3058 3506 7.214467 TGAATCATAGAGAAACCCACAAAAC 57.786 36.000 0.00 0.00 0.00 2.43
3064 3520 4.816392 AGAGAAACCCACAAAACACAAAC 58.184 39.130 0.00 0.00 0.00 2.93
3065 3521 4.282195 AGAGAAACCCACAAAACACAAACA 59.718 37.500 0.00 0.00 0.00 2.83
3066 3522 4.962155 AGAAACCCACAAAACACAAACAA 58.038 34.783 0.00 0.00 0.00 2.83
3070 3526 6.641169 AACCCACAAAACACAAACAAAATT 57.359 29.167 0.00 0.00 0.00 1.82
3136 3592 9.861138 CAACTTAGCGTAGTATTGTAGTAGTAG 57.139 37.037 0.00 0.00 0.00 2.57
3323 3782 0.521735 GTTCCGTTTCCATGCCTGTC 59.478 55.000 0.00 0.00 0.00 3.51
3485 3947 5.366768 TCCACTCCATTTTCATCCCTACTAG 59.633 44.000 0.00 0.00 0.00 2.57
3486 3948 5.366768 CCACTCCATTTTCATCCCTACTAGA 59.633 44.000 0.00 0.00 0.00 2.43
3487 3949 6.043706 CCACTCCATTTTCATCCCTACTAGAT 59.956 42.308 0.00 0.00 0.00 1.98
3488 3950 7.235606 CCACTCCATTTTCATCCCTACTAGATA 59.764 40.741 0.00 0.00 0.00 1.98
3489 3951 8.310382 CACTCCATTTTCATCCCTACTAGATAG 58.690 40.741 0.00 0.00 0.00 2.08
3524 3986 2.490509 TGCGAGACGGATTTCAAGTAGA 59.509 45.455 0.00 0.00 0.00 2.59
3554 4016 3.316868 GGTCAGTGTCTGGAGCTAGATAC 59.683 52.174 5.49 5.49 38.60 2.24
3558 4020 2.688958 GTGTCTGGAGCTAGATACGGTT 59.311 50.000 0.00 0.00 30.83 4.44
3606 4068 9.856162 TCCCTTGGTAAATTAGTAATGATTACC 57.144 33.333 20.49 20.49 43.64 2.85
3649 4111 4.755629 TCCGTTCCAAAATAATTGTCGTGA 59.244 37.500 0.00 0.00 0.00 4.35
3688 4150 4.927782 TGGAGGTGTGCGTGTGGC 62.928 66.667 0.00 0.00 43.96 5.01
3785 4247 6.100424 AGGTTTTACCAACCATTCCATTTTCA 59.900 34.615 6.53 0.00 41.95 2.69
3847 4313 1.737029 CGTGAGTTCATCGGCATCTGT 60.737 52.381 0.00 0.00 0.00 3.41
3851 4317 3.201290 GAGTTCATCGGCATCTGTGATT 58.799 45.455 0.00 0.00 0.00 2.57
3920 4386 1.140452 AGCTTCGTCATCATCAGGCAT 59.860 47.619 0.00 0.00 0.00 4.40
3923 4389 3.059325 GCTTCGTCATCATCAGGCATAAC 60.059 47.826 0.00 0.00 0.00 1.89
3924 4390 2.742774 TCGTCATCATCAGGCATAACG 58.257 47.619 0.00 0.00 0.00 3.18
4026 4492 4.399303 GCTAGCTTGTGAACCAAATACCAT 59.601 41.667 7.70 0.00 31.20 3.55
4039 4505 8.472007 AACCAAATACCATCAGAGTTAACAAA 57.528 30.769 8.61 0.00 0.00 2.83
4072 4538 6.371389 GCTACTTTGAACTGACATTACAACC 58.629 40.000 0.00 0.00 0.00 3.77
4108 4574 0.163788 CTGAACAACCGTGCGTGATC 59.836 55.000 0.00 0.00 0.00 2.92
4485 4953 1.233019 GAGCTGTTGCATGTCTGTGT 58.767 50.000 0.00 0.00 42.74 3.72
4487 4955 0.946528 GCTGTTGCATGTCTGTGTGA 59.053 50.000 0.00 0.00 39.41 3.58
4691 5666 1.308998 CACACGAGCCTTCCAAACTT 58.691 50.000 0.00 0.00 0.00 2.66
4709 5684 1.457303 CTTGTTTGAACCTCGAGAGCG 59.543 52.381 15.71 0.00 39.35 5.03
4716 5691 3.222855 CCTCGAGAGCGATGCCCT 61.223 66.667 15.71 0.00 46.80 5.19
4897 5888 1.134580 CACAGTCTGGGCATAGTCTGG 60.135 57.143 15.44 5.43 37.90 3.86
4930 5921 2.677542 AGTGTACAGGACAGGTCTGA 57.322 50.000 4.84 0.00 39.29 3.27
4952 6063 2.728015 CGTGTGTGCGTGCGTAGA 60.728 61.111 0.00 0.00 0.00 2.59
4993 6157 0.248012 TGTGTGTCCGTGTCTGTTGT 59.752 50.000 0.00 0.00 0.00 3.32
5134 7826 1.463444 GCTCGTTGTAATGGGTGTGTC 59.537 52.381 0.00 0.00 0.00 3.67
5142 7834 0.243907 AATGGGTGTGTCTCGAGTCG 59.756 55.000 13.13 6.09 0.00 4.18
5148 7840 0.384309 TGTGTCTCGAGTCGTTGCTT 59.616 50.000 13.13 0.00 0.00 3.91
5151 7843 1.605232 TGTCTCGAGTCGTTGCTTGTA 59.395 47.619 13.13 0.00 0.00 2.41
5219 7911 1.079750 GCGTCTCCTGTGTCCTTCC 60.080 63.158 0.00 0.00 0.00 3.46
5236 7928 3.560239 CCTTCCTGTTCCTCCTTTCTTCC 60.560 52.174 0.00 0.00 0.00 3.46
5265 7971 0.746204 TCGAGCGCATCAGAGAGAGT 60.746 55.000 11.47 0.00 0.00 3.24
5273 7979 3.303990 CGCATCAGAGAGAGTAGAAGAGC 60.304 52.174 0.00 0.00 0.00 4.09
5288 7996 0.812412 AGAGCGCTACGGAGAGAGAC 60.812 60.000 11.50 0.00 0.00 3.36
5293 8001 1.741055 CGCTACGGAGAGAGACAGAGT 60.741 57.143 0.00 0.00 0.00 3.24
5299 8007 2.661718 GGAGAGAGACAGAGTTAGGGG 58.338 57.143 0.00 0.00 0.00 4.79
5334 8042 5.240713 CCAACAATTGGTATCAGAGCTTC 57.759 43.478 10.83 0.00 45.93 3.86
5335 8043 4.201851 CCAACAATTGGTATCAGAGCTTCG 60.202 45.833 10.83 0.00 45.93 3.79
5336 8044 3.535561 ACAATTGGTATCAGAGCTTCGG 58.464 45.455 10.83 0.00 0.00 4.30
5337 8045 3.055094 ACAATTGGTATCAGAGCTTCGGT 60.055 43.478 10.83 0.00 0.00 4.69
5338 8046 3.914426 ATTGGTATCAGAGCTTCGGTT 57.086 42.857 0.00 0.00 0.00 4.44
5339 8047 2.672961 TGGTATCAGAGCTTCGGTTG 57.327 50.000 0.00 0.00 0.00 3.77
5340 8048 1.291132 GGTATCAGAGCTTCGGTTGC 58.709 55.000 0.00 0.00 0.00 4.17
5341 8049 0.924090 GTATCAGAGCTTCGGTTGCG 59.076 55.000 0.00 0.00 35.28 4.85
5342 8050 0.815095 TATCAGAGCTTCGGTTGCGA 59.185 50.000 0.00 0.00 35.28 5.10
5343 8051 0.459237 ATCAGAGCTTCGGTTGCGAG 60.459 55.000 0.00 0.00 35.28 5.03
5344 8052 2.097038 CAGAGCTTCGGTTGCGAGG 61.097 63.158 0.00 0.00 35.28 4.63
5345 8053 2.048127 GAGCTTCGGTTGCGAGGT 60.048 61.111 0.00 0.00 35.28 3.85
5346 8054 2.357517 AGCTTCGGTTGCGAGGTG 60.358 61.111 0.00 0.00 35.28 4.00
5347 8055 2.357034 GCTTCGGTTGCGAGGTGA 60.357 61.111 0.00 0.00 0.00 4.02
5348 8056 2.383527 GCTTCGGTTGCGAGGTGAG 61.384 63.158 0.00 0.00 0.00 3.51
5349 8057 2.357034 TTCGGTTGCGAGGTGAGC 60.357 61.111 0.00 0.00 0.00 4.26
5350 8058 3.158537 TTCGGTTGCGAGGTGAGCA 62.159 57.895 0.00 0.00 43.59 4.26
5351 8059 3.414700 CGGTTGCGAGGTGAGCAC 61.415 66.667 0.00 0.00 45.10 4.40
5370 8078 4.760047 GGCGGGCATGTCACTCGT 62.760 66.667 0.00 0.00 0.00 4.18
5371 8079 3.188786 GCGGGCATGTCACTCGTC 61.189 66.667 0.00 0.00 0.00 4.20
5372 8080 2.509336 CGGGCATGTCACTCGTCC 60.509 66.667 0.00 0.00 0.00 4.79
5373 8081 2.125106 GGGCATGTCACTCGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
5374 8082 2.509336 GGCATGTCACTCGTCCCG 60.509 66.667 0.00 0.00 0.00 5.14
5375 8083 2.261671 GCATGTCACTCGTCCCGT 59.738 61.111 0.00 0.00 0.00 5.28
5376 8084 1.509463 GCATGTCACTCGTCCCGTA 59.491 57.895 0.00 0.00 0.00 4.02
5377 8085 0.801067 GCATGTCACTCGTCCCGTAC 60.801 60.000 0.00 0.00 0.00 3.67
5409 8117 1.421485 CGATGTCGCTGCAAGTTCC 59.579 57.895 0.00 0.00 35.30 3.62
5410 8118 1.291184 CGATGTCGCTGCAAGTTCCA 61.291 55.000 0.00 0.00 35.30 3.53
5411 8119 0.166814 GATGTCGCTGCAAGTTCCAC 59.833 55.000 0.00 0.00 35.30 4.02
5412 8120 1.237285 ATGTCGCTGCAAGTTCCACC 61.237 55.000 0.00 0.00 35.30 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.981859 ACACGAAAGGGATAAGCGAT 57.018 45.000 0.00 0.00 38.45 4.58
1 2 2.754946 AACACGAAAGGGATAAGCGA 57.245 45.000 0.00 0.00 38.45 4.93
2 3 3.000727 AGAAACACGAAAGGGATAAGCG 58.999 45.455 0.00 0.00 38.45 4.68
3 4 5.181433 AGAAAGAAACACGAAAGGGATAAGC 59.819 40.000 0.00 0.00 38.45 3.09
4 5 6.204882 ACAGAAAGAAACACGAAAGGGATAAG 59.795 38.462 0.00 0.00 38.45 1.73
5 6 6.059484 ACAGAAAGAAACACGAAAGGGATAA 58.941 36.000 0.00 0.00 38.45 1.75
6 7 5.617252 ACAGAAAGAAACACGAAAGGGATA 58.383 37.500 0.00 0.00 38.45 2.59
7 8 4.461198 ACAGAAAGAAACACGAAAGGGAT 58.539 39.130 0.00 0.00 38.45 3.85
8 9 3.881220 ACAGAAAGAAACACGAAAGGGA 58.119 40.909 0.00 0.00 38.45 4.20
9 10 4.142469 ACAACAGAAAGAAACACGAAAGGG 60.142 41.667 0.00 0.00 43.28 3.95
10 11 4.981794 ACAACAGAAAGAAACACGAAAGG 58.018 39.130 0.00 0.00 0.00 3.11
11 12 5.677178 GCTACAACAGAAAGAAACACGAAAG 59.323 40.000 0.00 0.00 0.00 2.62
12 13 5.122554 TGCTACAACAGAAAGAAACACGAAA 59.877 36.000 0.00 0.00 0.00 3.46
13 14 4.632251 TGCTACAACAGAAAGAAACACGAA 59.368 37.500 0.00 0.00 0.00 3.85
14 15 4.185394 TGCTACAACAGAAAGAAACACGA 58.815 39.130 0.00 0.00 0.00 4.35
15 16 4.034048 ACTGCTACAACAGAAAGAAACACG 59.966 41.667 0.00 0.00 40.25 4.49
16 17 5.485662 ACTGCTACAACAGAAAGAAACAC 57.514 39.130 0.00 0.00 40.25 3.32
17 18 6.346096 AGTACTGCTACAACAGAAAGAAACA 58.654 36.000 0.00 0.00 40.25 2.83
18 19 6.846325 AGTACTGCTACAACAGAAAGAAAC 57.154 37.500 0.00 0.00 40.25 2.78
19 20 6.645415 GCTAGTACTGCTACAACAGAAAGAAA 59.355 38.462 5.39 0.00 40.25 2.52
20 21 6.157211 GCTAGTACTGCTACAACAGAAAGAA 58.843 40.000 5.39 0.00 40.25 2.52
21 22 5.619309 CGCTAGTACTGCTACAACAGAAAGA 60.619 44.000 5.39 0.00 40.25 2.52
22 23 4.559251 CGCTAGTACTGCTACAACAGAAAG 59.441 45.833 5.39 0.00 40.25 2.62
23 24 4.216902 TCGCTAGTACTGCTACAACAGAAA 59.783 41.667 5.39 0.00 40.25 2.52
24 25 3.754850 TCGCTAGTACTGCTACAACAGAA 59.245 43.478 5.39 0.00 40.25 3.02
25 26 3.340928 TCGCTAGTACTGCTACAACAGA 58.659 45.455 5.39 0.00 40.25 3.41
26 27 3.759527 TCGCTAGTACTGCTACAACAG 57.240 47.619 5.39 0.00 43.59 3.16
27 28 5.758924 CATATCGCTAGTACTGCTACAACA 58.241 41.667 5.39 0.00 0.00 3.33
28 29 4.617645 GCATATCGCTAGTACTGCTACAAC 59.382 45.833 5.39 0.00 37.77 3.32
29 30 4.612939 CGCATATCGCTAGTACTGCTACAA 60.613 45.833 5.39 0.00 39.08 2.41
30 31 3.120304 CGCATATCGCTAGTACTGCTACA 60.120 47.826 5.39 0.00 39.08 2.74
31 32 3.120269 ACGCATATCGCTAGTACTGCTAC 60.120 47.826 5.39 0.00 43.23 3.58
32 33 3.072211 ACGCATATCGCTAGTACTGCTA 58.928 45.455 5.39 0.00 43.23 3.49
33 34 1.880675 ACGCATATCGCTAGTACTGCT 59.119 47.619 5.39 0.00 43.23 4.24
34 35 2.333389 ACGCATATCGCTAGTACTGC 57.667 50.000 5.39 6.44 43.23 4.40
35 36 4.923264 TCTACGCATATCGCTAGTACTG 57.077 45.455 5.39 0.00 43.23 2.74
36 37 4.936411 ACATCTACGCATATCGCTAGTACT 59.064 41.667 0.00 0.00 43.23 2.73
37 38 5.219226 ACATCTACGCATATCGCTAGTAC 57.781 43.478 0.00 0.00 43.23 2.73
38 39 5.874895 AACATCTACGCATATCGCTAGTA 57.125 39.130 0.00 0.00 43.23 1.82
39 40 4.768130 AACATCTACGCATATCGCTAGT 57.232 40.909 0.00 0.00 43.23 2.57
40 41 5.394802 AGAAACATCTACGCATATCGCTAG 58.605 41.667 0.00 0.00 43.23 3.42
41 42 5.372547 AGAAACATCTACGCATATCGCTA 57.627 39.130 0.00 0.00 43.23 4.26
42 43 4.244425 AGAAACATCTACGCATATCGCT 57.756 40.909 0.00 0.00 43.23 4.93
43 44 6.633668 AATAGAAACATCTACGCATATCGC 57.366 37.500 0.00 0.00 43.23 4.58
44 45 9.290483 ACATAATAGAAACATCTACGCATATCG 57.710 33.333 0.00 0.00 45.38 2.92
46 47 8.873830 GCACATAATAGAAACATCTACGCATAT 58.126 33.333 0.00 0.00 0.00 1.78
47 48 7.061789 CGCACATAATAGAAACATCTACGCATA 59.938 37.037 0.00 0.00 0.00 3.14
48 49 6.128822 CGCACATAATAGAAACATCTACGCAT 60.129 38.462 0.00 0.00 0.00 4.73
49 50 5.174943 CGCACATAATAGAAACATCTACGCA 59.825 40.000 0.00 0.00 0.00 5.24
50 51 5.175126 ACGCACATAATAGAAACATCTACGC 59.825 40.000 0.00 0.00 0.00 4.42
51 52 6.749216 ACGCACATAATAGAAACATCTACG 57.251 37.500 0.00 0.00 0.00 3.51
52 53 8.798748 ACTACGCACATAATAGAAACATCTAC 57.201 34.615 0.00 0.00 0.00 2.59
53 54 9.888878 GTACTACGCACATAATAGAAACATCTA 57.111 33.333 0.00 0.00 0.00 1.98
54 55 8.410912 TGTACTACGCACATAATAGAAACATCT 58.589 33.333 0.00 0.00 0.00 2.90
55 56 8.570096 TGTACTACGCACATAATAGAAACATC 57.430 34.615 0.00 0.00 0.00 3.06
56 57 8.978539 CATGTACTACGCACATAATAGAAACAT 58.021 33.333 0.00 0.00 34.88 2.71
57 58 7.042992 GCATGTACTACGCACATAATAGAAACA 60.043 37.037 0.00 0.00 34.88 2.83
58 59 7.169308 AGCATGTACTACGCACATAATAGAAAC 59.831 37.037 0.00 0.00 34.88 2.78
59 60 7.207383 AGCATGTACTACGCACATAATAGAAA 58.793 34.615 0.00 0.00 34.88 2.52
60 61 6.745116 AGCATGTACTACGCACATAATAGAA 58.255 36.000 0.00 0.00 34.88 2.10
61 62 6.206829 AGAGCATGTACTACGCACATAATAGA 59.793 38.462 0.00 0.00 34.88 1.98
62 63 6.306596 CAGAGCATGTACTACGCACATAATAG 59.693 42.308 0.00 0.00 34.88 1.73
63 64 6.149633 CAGAGCATGTACTACGCACATAATA 58.850 40.000 0.00 0.00 34.88 0.98
64 65 4.984785 CAGAGCATGTACTACGCACATAAT 59.015 41.667 0.00 0.00 34.88 1.28
65 66 4.142249 ACAGAGCATGTACTACGCACATAA 60.142 41.667 0.00 0.00 41.60 1.90
66 67 3.380320 ACAGAGCATGTACTACGCACATA 59.620 43.478 0.00 0.00 41.60 2.29
67 68 2.166459 ACAGAGCATGTACTACGCACAT 59.834 45.455 0.00 0.00 41.60 3.21
68 69 1.544246 ACAGAGCATGTACTACGCACA 59.456 47.619 0.00 0.00 41.60 4.57
69 70 2.279582 ACAGAGCATGTACTACGCAC 57.720 50.000 0.00 0.00 41.60 5.34
70 71 3.692593 TCTAACAGAGCATGTACTACGCA 59.307 43.478 0.00 0.00 43.00 5.24
71 72 4.288670 TCTAACAGAGCATGTACTACGC 57.711 45.455 0.00 0.00 43.00 4.42
72 73 5.140872 CGATCTAACAGAGCATGTACTACG 58.859 45.833 0.00 0.00 43.00 3.51
73 74 6.062434 ACGATCTAACAGAGCATGTACTAC 57.938 41.667 0.00 0.00 43.00 2.73
74 75 7.797038 TTACGATCTAACAGAGCATGTACTA 57.203 36.000 0.00 0.00 43.00 1.82
75 76 6.694877 TTACGATCTAACAGAGCATGTACT 57.305 37.500 0.00 0.00 43.00 2.73
76 77 7.139392 TGATTACGATCTAACAGAGCATGTAC 58.861 38.462 0.00 0.00 35.62 2.90
77 78 7.013369 ACTGATTACGATCTAACAGAGCATGTA 59.987 37.037 0.00 0.00 35.62 2.29
78 79 6.149129 TGATTACGATCTAACAGAGCATGT 57.851 37.500 0.00 0.00 37.13 3.21
79 80 6.143598 CACTGATTACGATCTAACAGAGCATG 59.856 42.308 0.00 0.00 27.99 4.06
80 81 6.183360 ACACTGATTACGATCTAACAGAGCAT 60.183 38.462 0.00 0.00 27.99 3.79
81 82 5.125578 ACACTGATTACGATCTAACAGAGCA 59.874 40.000 0.00 0.00 27.99 4.26
82 83 5.457148 CACACTGATTACGATCTAACAGAGC 59.543 44.000 0.00 0.00 33.28 4.09
83 84 6.556212 ACACACTGATTACGATCTAACAGAG 58.444 40.000 0.00 0.00 33.28 3.35
84 85 6.510879 ACACACTGATTACGATCTAACAGA 57.489 37.500 0.00 0.00 33.28 3.41
85 86 8.858003 ATAACACACTGATTACGATCTAACAG 57.142 34.615 0.00 0.00 33.28 3.16
86 87 8.463607 TGATAACACACTGATTACGATCTAACA 58.536 33.333 0.00 0.00 33.28 2.41
87 88 8.851960 TGATAACACACTGATTACGATCTAAC 57.148 34.615 0.00 0.00 33.28 2.34
89 90 9.463443 CATTGATAACACACTGATTACGATCTA 57.537 33.333 0.00 0.00 33.28 1.98
90 91 7.981789 ACATTGATAACACACTGATTACGATCT 59.018 33.333 0.00 0.00 33.28 2.75
91 92 8.131455 ACATTGATAACACACTGATTACGATC 57.869 34.615 0.00 0.00 0.00 3.69
92 93 8.390354 CAACATTGATAACACACTGATTACGAT 58.610 33.333 0.00 0.00 0.00 3.73
93 94 7.386573 ACAACATTGATAACACACTGATTACGA 59.613 33.333 0.00 0.00 0.00 3.43
94 95 7.518161 ACAACATTGATAACACACTGATTACG 58.482 34.615 0.00 0.00 0.00 3.18
95 96 7.962918 GGACAACATTGATAACACACTGATTAC 59.037 37.037 0.00 0.00 0.00 1.89
96 97 7.663493 TGGACAACATTGATAACACACTGATTA 59.337 33.333 0.00 0.00 0.00 1.75
97 98 6.489700 TGGACAACATTGATAACACACTGATT 59.510 34.615 0.00 0.00 0.00 2.57
98 99 6.003326 TGGACAACATTGATAACACACTGAT 58.997 36.000 0.00 0.00 0.00 2.90
99 100 5.372373 TGGACAACATTGATAACACACTGA 58.628 37.500 0.00 0.00 0.00 3.41
100 101 5.687770 TGGACAACATTGATAACACACTG 57.312 39.130 0.00 0.00 0.00 3.66
101 102 7.828717 TGATATGGACAACATTGATAACACACT 59.171 33.333 0.00 0.00 41.03 3.55
102 103 7.984391 TGATATGGACAACATTGATAACACAC 58.016 34.615 0.00 0.00 41.03 3.82
103 104 8.623030 CATGATATGGACAACATTGATAACACA 58.377 33.333 0.00 0.00 41.03 3.72
104 105 7.592533 GCATGATATGGACAACATTGATAACAC 59.407 37.037 0.00 0.00 41.03 3.32
105 106 7.503230 AGCATGATATGGACAACATTGATAACA 59.497 33.333 0.00 0.00 41.03 2.41
106 107 7.879070 AGCATGATATGGACAACATTGATAAC 58.121 34.615 0.00 0.00 41.03 1.89
107 108 7.720515 TGAGCATGATATGGACAACATTGATAA 59.279 33.333 0.00 0.00 41.03 1.75
108 109 7.225725 TGAGCATGATATGGACAACATTGATA 58.774 34.615 0.00 0.00 41.03 2.15
109 110 6.066032 TGAGCATGATATGGACAACATTGAT 58.934 36.000 0.00 0.00 41.03 2.57
110 111 5.438833 TGAGCATGATATGGACAACATTGA 58.561 37.500 0.00 0.00 41.03 2.57
111 112 5.761165 TGAGCATGATATGGACAACATTG 57.239 39.130 0.00 0.00 41.03 2.82
112 113 6.066032 TCATGAGCATGATATGGACAACATT 58.934 36.000 8.99 0.00 42.42 2.71
113 114 5.627135 TCATGAGCATGATATGGACAACAT 58.373 37.500 8.99 0.00 42.42 2.71
114 115 5.038651 TCATGAGCATGATATGGACAACA 57.961 39.130 8.99 0.00 42.42 3.33
164 165 7.375834 TCACGATGATAAGTAAACAGACAGTT 58.624 34.615 0.00 0.00 43.89 3.16
165 166 6.920817 TCACGATGATAAGTAAACAGACAGT 58.079 36.000 0.00 0.00 0.00 3.55
166 167 7.328493 TGTTCACGATGATAAGTAAACAGACAG 59.672 37.037 0.00 0.00 0.00 3.51
167 168 7.149307 TGTTCACGATGATAAGTAAACAGACA 58.851 34.615 0.00 0.00 0.00 3.41
168 169 7.576750 TGTTCACGATGATAAGTAAACAGAC 57.423 36.000 0.00 0.00 0.00 3.51
171 172 9.256477 GGATATGTTCACGATGATAAGTAAACA 57.744 33.333 0.00 0.00 0.00 2.83
172 173 8.425491 CGGATATGTTCACGATGATAAGTAAAC 58.575 37.037 0.00 0.00 0.00 2.01
173 174 8.139350 ACGGATATGTTCACGATGATAAGTAAA 58.861 33.333 0.00 0.00 0.00 2.01
174 175 7.654568 ACGGATATGTTCACGATGATAAGTAA 58.345 34.615 0.00 0.00 0.00 2.24
175 176 7.210718 ACGGATATGTTCACGATGATAAGTA 57.789 36.000 0.00 0.00 0.00 2.24
176 177 6.085555 ACGGATATGTTCACGATGATAAGT 57.914 37.500 0.00 0.00 0.00 2.24
177 178 5.573282 GGACGGATATGTTCACGATGATAAG 59.427 44.000 0.00 0.00 0.00 1.73
178 179 5.466819 GGACGGATATGTTCACGATGATAA 58.533 41.667 0.00 0.00 0.00 1.75
179 180 4.379082 CGGACGGATATGTTCACGATGATA 60.379 45.833 0.00 0.00 0.00 2.15
180 181 3.611766 CGGACGGATATGTTCACGATGAT 60.612 47.826 0.00 0.00 0.00 2.45
181 182 2.287368 CGGACGGATATGTTCACGATGA 60.287 50.000 0.00 0.00 0.00 2.92
182 183 2.051423 CGGACGGATATGTTCACGATG 58.949 52.381 0.00 0.00 0.00 3.84
183 184 1.000607 CCGGACGGATATGTTCACGAT 60.001 52.381 4.40 0.00 37.50 3.73
184 185 0.382873 CCGGACGGATATGTTCACGA 59.617 55.000 4.40 0.00 37.50 4.35
185 186 1.213094 GCCGGACGGATATGTTCACG 61.213 60.000 15.99 0.00 37.50 4.35
186 187 0.179094 TGCCGGACGGATATGTTCAC 60.179 55.000 15.99 0.00 37.50 3.18
187 188 0.179094 GTGCCGGACGGATATGTTCA 60.179 55.000 15.99 0.00 37.50 3.18
188 189 0.878961 GGTGCCGGACGGATATGTTC 60.879 60.000 15.99 0.00 37.50 3.18
189 190 1.145377 GGTGCCGGACGGATATGTT 59.855 57.895 15.99 0.00 37.50 2.71
190 191 2.061578 TGGTGCCGGACGGATATGT 61.062 57.895 15.99 0.00 37.50 2.29
191 192 1.594293 GTGGTGCCGGACGGATATG 60.594 63.158 15.99 0.00 37.50 1.78
192 193 2.819550 GTGGTGCCGGACGGATAT 59.180 61.111 15.99 0.00 37.50 1.63
193 194 3.829044 CGTGGTGCCGGACGGATA 61.829 66.667 15.99 0.00 37.50 2.59
198 199 3.894547 ATCCAACGTGGTGCCGGAC 62.895 63.158 5.05 0.00 39.03 4.79
199 200 3.632080 ATCCAACGTGGTGCCGGA 61.632 61.111 5.05 0.00 39.03 5.14
200 201 3.430862 CATCCAACGTGGTGCCGG 61.431 66.667 0.00 0.00 39.03 6.13
201 202 4.101790 GCATCCAACGTGGTGCCG 62.102 66.667 0.00 0.00 38.06 5.69
202 203 0.958382 TTAGCATCCAACGTGGTGCC 60.958 55.000 7.46 0.00 41.92 5.01
203 204 0.878416 TTTAGCATCCAACGTGGTGC 59.122 50.000 3.02 3.02 41.57 5.01
204 205 2.151202 ACTTTAGCATCCAACGTGGTG 58.849 47.619 0.00 0.00 39.03 4.17
205 206 2.552315 CAACTTTAGCATCCAACGTGGT 59.448 45.455 0.00 0.00 39.03 4.16
206 207 2.811431 TCAACTTTAGCATCCAACGTGG 59.189 45.455 0.00 0.00 39.43 4.94
207 208 4.437390 GGATCAACTTTAGCATCCAACGTG 60.437 45.833 0.00 0.00 35.72 4.49
208 209 3.689649 GGATCAACTTTAGCATCCAACGT 59.310 43.478 0.00 0.00 35.72 3.99
209 210 3.242413 CGGATCAACTTTAGCATCCAACG 60.242 47.826 0.00 0.00 35.42 4.10
210 211 3.065371 CCGGATCAACTTTAGCATCCAAC 59.935 47.826 0.00 0.00 35.42 3.77
211 212 3.278574 CCGGATCAACTTTAGCATCCAA 58.721 45.455 0.00 0.00 35.42 3.53
212 213 2.421388 CCCGGATCAACTTTAGCATCCA 60.421 50.000 0.73 0.00 35.42 3.41
213 214 2.222027 CCCGGATCAACTTTAGCATCC 58.778 52.381 0.73 0.00 32.75 3.51
214 215 1.604278 GCCCGGATCAACTTTAGCATC 59.396 52.381 0.73 0.00 0.00 3.91
215 216 1.064758 TGCCCGGATCAACTTTAGCAT 60.065 47.619 0.73 0.00 0.00 3.79
216 217 0.326595 TGCCCGGATCAACTTTAGCA 59.673 50.000 0.73 0.00 0.00 3.49
217 218 0.733150 GTGCCCGGATCAACTTTAGC 59.267 55.000 0.73 0.00 0.00 3.09
218 219 2.009774 CAGTGCCCGGATCAACTTTAG 58.990 52.381 0.73 0.00 0.00 1.85
219 220 1.349688 ACAGTGCCCGGATCAACTTTA 59.650 47.619 0.73 0.00 0.00 1.85
220 221 0.110486 ACAGTGCCCGGATCAACTTT 59.890 50.000 0.73 0.00 0.00 2.66
221 222 0.606401 CACAGTGCCCGGATCAACTT 60.606 55.000 0.73 0.00 0.00 2.66
222 223 1.003355 CACAGTGCCCGGATCAACT 60.003 57.895 0.73 0.00 0.00 3.16
223 224 2.040544 CCACAGTGCCCGGATCAAC 61.041 63.158 0.73 0.00 0.00 3.18
224 225 2.350895 CCACAGTGCCCGGATCAA 59.649 61.111 0.73 0.00 0.00 2.57
225 226 2.927856 ACCACAGTGCCCGGATCA 60.928 61.111 0.73 0.00 0.00 2.92
226 227 2.125106 GACCACAGTGCCCGGATC 60.125 66.667 0.73 0.00 0.00 3.36
227 228 3.717294 GGACCACAGTGCCCGGAT 61.717 66.667 0.73 0.00 0.00 4.18
229 230 4.704833 CTGGACCACAGTGCCCGG 62.705 72.222 0.00 0.00 42.42 5.73
236 237 6.861905 GCGTAAGTAAATGTCTGGACCACAG 61.862 48.000 0.00 0.00 44.60 3.66
237 238 4.562082 CGTAAGTAAATGTCTGGACCACA 58.438 43.478 0.00 0.00 0.00 4.17
238 239 3.370061 GCGTAAGTAAATGTCTGGACCAC 59.630 47.826 0.00 0.00 41.68 4.16
239 240 3.259876 AGCGTAAGTAAATGTCTGGACCA 59.740 43.478 0.00 0.00 41.68 4.02
240 241 3.858247 AGCGTAAGTAAATGTCTGGACC 58.142 45.455 0.00 0.00 41.68 4.46
241 242 5.618561 CAAAGCGTAAGTAAATGTCTGGAC 58.381 41.667 0.00 0.00 41.68 4.02
242 243 4.153475 GCAAAGCGTAAGTAAATGTCTGGA 59.847 41.667 0.00 0.00 41.68 3.86
243 244 4.403453 GCAAAGCGTAAGTAAATGTCTGG 58.597 43.478 0.00 0.00 41.68 3.86
267 268 2.902343 GCATCCCTAAGGCCGTGC 60.902 66.667 0.00 0.00 0.00 5.34
268 269 0.466189 ATTGCATCCCTAAGGCCGTG 60.466 55.000 0.00 0.00 0.00 4.94
269 270 0.258774 AATTGCATCCCTAAGGCCGT 59.741 50.000 0.00 0.00 0.00 5.68
270 271 2.270352 TAATTGCATCCCTAAGGCCG 57.730 50.000 0.00 0.00 0.00 6.13
271 272 4.098501 GCATATAATTGCATCCCTAAGGCC 59.901 45.833 0.00 0.00 42.31 5.19
272 273 5.254339 GCATATAATTGCATCCCTAAGGC 57.746 43.478 0.00 0.00 42.31 4.35
340 377 4.799949 TGTTTTGTATACGTACGCCATCTC 59.200 41.667 16.72 6.85 33.36 2.75
418 463 4.577246 CGGCTCGGCTGGCTCTAC 62.577 72.222 0.00 0.00 0.00 2.59
465 510 1.553690 AATCCCGGACCCAGTCAGTG 61.554 60.000 0.73 0.00 33.68 3.66
702 747 0.679505 CGTTCCTGTGGGAGAAGACA 59.320 55.000 0.00 0.00 43.29 3.41
841 887 6.108687 TGGTTGAAGAGTATGTATGCTTCTG 58.891 40.000 0.00 0.00 38.03 3.02
894 940 3.452474 CGTTTATGCAGAGAGAGGAAGG 58.548 50.000 0.00 0.00 0.00 3.46
909 1204 3.587923 TCGACCGATTGTTTCCGTTTAT 58.412 40.909 0.00 0.00 0.00 1.40
955 1250 1.347378 TGGCTTCACATGTGCTACTGA 59.653 47.619 21.38 0.00 0.00 3.41
956 1251 1.812235 TGGCTTCACATGTGCTACTG 58.188 50.000 21.38 9.47 0.00 2.74
962 1260 1.321474 ACCAGTTGGCTTCACATGTG 58.679 50.000 20.18 20.18 39.32 3.21
989 1287 0.869454 CTCGCTCATCCTCTGAACGC 60.869 60.000 0.00 0.00 41.98 4.84
1179 1541 3.702045 AGAAGGCACTAGAGTCCATGTAC 59.298 47.826 0.00 0.00 38.49 2.90
1209 1579 6.333416 TCTCATCTGTAAAAGAGGTGAATCG 58.667 40.000 0.00 0.00 36.55 3.34
1230 1601 1.281899 GCACGTGCTTGGACTATCTC 58.718 55.000 32.55 0.00 38.21 2.75
1311 1688 4.814234 CACAAGGGCGCAGAATTAAGTATA 59.186 41.667 10.83 0.00 0.00 1.47
1555 1939 2.787249 CGCGAGTGGATTTGGCAG 59.213 61.111 0.00 0.00 0.00 4.85
1607 1994 1.468520 ACAGATAAACATGCGTGTGGC 59.531 47.619 13.39 2.60 38.92 5.01
1608 1995 3.002791 AGACAGATAAACATGCGTGTGG 58.997 45.455 13.39 1.32 38.92 4.17
1612 1999 3.367932 CACGAAGACAGATAAACATGCGT 59.632 43.478 0.00 0.00 0.00 5.24
1622 2009 1.296715 GCCACCCACGAAGACAGAT 59.703 57.895 0.00 0.00 0.00 2.90
1729 2116 0.868406 GACAGACCCAAGTTGAAGCG 59.132 55.000 3.87 0.00 0.00 4.68
1914 2301 4.019792 TCAATGAGCCTCTTGCAAGTTA 57.980 40.909 25.19 7.01 44.83 2.24
1923 2310 7.349598 AGTATAAAACCATTCAATGAGCCTCT 58.650 34.615 0.00 0.00 0.00 3.69
2020 2407 9.871238 AAAGTGAGATATTCTTGTAACATACGT 57.129 29.630 0.00 0.00 0.00 3.57
2236 2624 2.321719 GATCCCTAGAGGTTCCCTGAC 58.678 57.143 0.00 0.00 31.76 3.51
2358 2750 2.430465 TCAGAGCTGAAACATGCTTCC 58.570 47.619 6.39 0.00 39.91 3.46
2566 3009 4.541705 TGGACCTCCAATTTTCTTTGACA 58.458 39.130 0.00 0.00 44.35 3.58
2713 3156 3.088532 TGGTTCCATCAATTGTACTGGC 58.911 45.455 15.27 6.57 0.00 4.85
2733 3176 6.922407 TGTGACATTTGACCAAAATACATGTG 59.078 34.615 9.11 0.00 36.28 3.21
2782 3225 2.584236 GAATACCCAGCGAGAGGTCTA 58.416 52.381 0.00 0.00 41.81 2.59
2834 3280 3.243771 CGCTCCGTTTTCATCCCTACTAT 60.244 47.826 0.00 0.00 0.00 2.12
2835 3281 2.100252 CGCTCCGTTTTCATCCCTACTA 59.900 50.000 0.00 0.00 0.00 1.82
2930 3376 3.677190 TGTTTCCGTATTCATTTCCGGT 58.323 40.909 0.00 0.00 41.17 5.28
2976 3422 0.319083 TGTGTCCGCTTTGTATCCGT 59.681 50.000 0.00 0.00 0.00 4.69
2979 3425 3.496884 TGTTTCTGTGTCCGCTTTGTATC 59.503 43.478 0.00 0.00 0.00 2.24
2995 3441 3.564225 GGTCAACGTCCATTTCTGTTTCT 59.436 43.478 0.00 0.00 0.00 2.52
3009 3455 2.613595 GTTTTTAGGTTCCGGTCAACGT 59.386 45.455 0.00 3.74 42.24 3.99
3049 3497 9.070149 CAATTAATTTTGTTTGTGTTTTGTGGG 57.930 29.630 0.00 0.00 0.00 4.61
3050 3498 9.617975 ACAATTAATTTTGTTTGTGTTTTGTGG 57.382 25.926 0.00 0.00 36.43 4.17
3136 3592 4.839121 TGACCCTATACACAATTGTCCAC 58.161 43.478 8.48 0.00 37.15 4.02
3485 3947 2.765122 GCAATGCTCCAGAGACCTATC 58.235 52.381 0.00 0.00 0.00 2.08
3486 3948 1.069823 CGCAATGCTCCAGAGACCTAT 59.930 52.381 2.94 0.00 0.00 2.57
3487 3949 0.461548 CGCAATGCTCCAGAGACCTA 59.538 55.000 2.94 0.00 0.00 3.08
3488 3950 1.220206 CGCAATGCTCCAGAGACCT 59.780 57.895 2.94 0.00 0.00 3.85
3489 3951 0.809241 CTCGCAATGCTCCAGAGACC 60.809 60.000 2.94 0.00 0.00 3.85
3554 4016 4.913126 GAGCCACTCCAGTAACCG 57.087 61.111 0.00 0.00 0.00 4.44
3606 4068 3.390311 GGAGGGGGTACTAATTACTGGTG 59.610 52.174 0.00 0.00 0.00 4.17
3608 4070 2.631545 CGGAGGGGGTACTAATTACTGG 59.368 54.545 0.00 0.00 0.00 4.00
3622 4084 3.767131 ACAATTATTTTGGAACGGAGGGG 59.233 43.478 0.00 0.00 0.00 4.79
3649 4111 6.714810 TCCATTGCAGTAGTGTGAACTAAAAT 59.285 34.615 0.00 0.00 0.00 1.82
3688 4150 0.602638 TACCCAGCACAAGCAAGTCG 60.603 55.000 0.00 0.00 45.49 4.18
3785 4247 0.105964 TCGGCTGTGCAACTTGTACT 59.894 50.000 10.83 0.00 38.04 2.73
3847 4313 5.221283 TGCTCAGAAAAACAATGCAGAATCA 60.221 36.000 0.00 0.00 0.00 2.57
3851 4317 4.233123 CTGCTCAGAAAAACAATGCAGA 57.767 40.909 6.24 0.00 46.23 4.26
3920 4386 1.372499 GCCACTGTCGCTGTCGTTA 60.372 57.895 0.00 0.00 36.96 3.18
3923 4389 4.363990 AGGCCACTGTCGCTGTCG 62.364 66.667 5.01 0.00 0.00 4.35
3924 4390 2.740055 CAGGCCACTGTCGCTGTC 60.740 66.667 5.01 0.00 39.92 3.51
4026 4492 6.362248 AGCCTTAAGGTTTTGTTAACTCTGA 58.638 36.000 22.55 0.00 37.57 3.27
4039 4505 5.763698 GTCAGTTCAAAGTAGCCTTAAGGTT 59.236 40.000 22.55 19.19 37.57 3.50
4072 4538 0.671781 CAGTCGACCAGGCCAAGAAG 60.672 60.000 13.01 0.00 0.00 2.85
4108 4574 0.748005 CTCCTGCCAATACCAACGGG 60.748 60.000 0.00 0.00 41.29 5.28
4433 4899 1.946156 CCATCGTCATCGCCGTCTG 60.946 63.158 0.00 0.00 36.96 3.51
4439 4905 0.384309 TCCTACACCATCGTCATCGC 59.616 55.000 0.00 0.00 36.96 4.58
4485 4953 1.138859 ACAGTAACAGCAGCACACTCA 59.861 47.619 0.00 0.00 0.00 3.41
4487 4955 1.414181 AGACAGTAACAGCAGCACACT 59.586 47.619 0.00 0.00 0.00 3.55
4562 5409 3.172471 GAGGTCCCGTATCCTCCTTAT 57.828 52.381 0.00 0.00 42.96 1.73
4563 5410 2.671896 GAGGTCCCGTATCCTCCTTA 57.328 55.000 0.00 0.00 42.96 2.69
4691 5666 0.671796 TCGCTCTCGAGGTTCAAACA 59.328 50.000 13.56 0.00 40.21 2.83
4709 5684 3.480470 TGCTAAGCTAATGAAGGGCATC 58.520 45.455 0.00 0.00 35.78 3.91
4716 5691 5.453567 TCGCTCTATGCTAAGCTAATGAA 57.546 39.130 0.00 0.00 40.11 2.57
4826 5804 3.376078 ATACCACGCACCCGACGT 61.376 61.111 0.00 0.00 46.42 4.34
4841 5819 0.948623 GCCAGACACACACACGCATA 60.949 55.000 0.00 0.00 0.00 3.14
4897 5888 1.135460 GTACACTAGTCGGACACAGGC 60.135 57.143 11.27 0.00 0.00 4.85
4930 5921 4.236416 GCACGCACACACGCAACT 62.236 61.111 0.00 0.00 36.19 3.16
4972 6083 0.248012 AACAGACACGGACACACACA 59.752 50.000 0.00 0.00 0.00 3.72
4977 6088 1.157870 CCCACAACAGACACGGACAC 61.158 60.000 0.00 0.00 0.00 3.67
4981 6092 1.961277 GAGCCCACAACAGACACGG 60.961 63.158 0.00 0.00 0.00 4.94
5109 7801 1.559682 ACCCATTACAACGAGCTCCAT 59.440 47.619 8.47 0.00 0.00 3.41
5134 7826 5.718246 CAATATTACAAGCAACGACTCGAG 58.282 41.667 11.84 11.84 0.00 4.04
5142 7834 3.775661 ACGGGCAATATTACAAGCAAC 57.224 42.857 0.00 0.00 0.00 4.17
5219 7911 2.300437 ACGAGGAAGAAAGGAGGAACAG 59.700 50.000 0.00 0.00 0.00 3.16
5265 7971 1.138464 TCTCTCCGTAGCGCTCTTCTA 59.862 52.381 16.34 0.00 0.00 2.10
5273 7979 0.934496 CTCTGTCTCTCTCCGTAGCG 59.066 60.000 0.00 0.00 0.00 4.26
5288 7996 2.177233 TCTACCCTAGCCCCTAACTCTG 59.823 54.545 0.00 0.00 0.00 3.35
5293 8001 1.062658 GGTGTCTACCCTAGCCCCTAA 60.063 57.143 0.00 0.00 41.36 2.69
5299 8007 3.629142 ATTGTTGGTGTCTACCCTAGC 57.371 47.619 0.00 0.00 46.96 3.42
5319 8027 2.935238 GCAACCGAAGCTCTGATACCAA 60.935 50.000 0.00 0.00 0.00 3.67
5320 8028 1.405526 GCAACCGAAGCTCTGATACCA 60.406 52.381 0.00 0.00 0.00 3.25
5321 8029 1.291132 GCAACCGAAGCTCTGATACC 58.709 55.000 0.00 0.00 0.00 2.73
5322 8030 0.924090 CGCAACCGAAGCTCTGATAC 59.076 55.000 0.00 0.00 36.29 2.24
5323 8031 0.815095 TCGCAACCGAAGCTCTGATA 59.185 50.000 0.00 0.00 41.17 2.15
5324 8032 0.459237 CTCGCAACCGAAGCTCTGAT 60.459 55.000 0.00 0.00 43.87 2.90
5325 8033 1.080501 CTCGCAACCGAAGCTCTGA 60.081 57.895 0.00 0.00 43.87 3.27
5326 8034 2.097038 CCTCGCAACCGAAGCTCTG 61.097 63.158 0.00 0.00 43.87 3.35
5327 8035 2.262915 CCTCGCAACCGAAGCTCT 59.737 61.111 0.00 0.00 43.87 4.09
5328 8036 2.048127 ACCTCGCAACCGAAGCTC 60.048 61.111 0.00 0.00 43.87 4.09
5329 8037 2.357517 CACCTCGCAACCGAAGCT 60.358 61.111 0.00 0.00 43.87 3.74
5330 8038 2.357034 TCACCTCGCAACCGAAGC 60.357 61.111 0.00 0.00 43.87 3.86
5331 8039 2.383527 GCTCACCTCGCAACCGAAG 61.384 63.158 0.00 0.00 43.87 3.79
5332 8040 2.357034 GCTCACCTCGCAACCGAA 60.357 61.111 0.00 0.00 43.87 4.30
5333 8041 3.611674 TGCTCACCTCGCAACCGA 61.612 61.111 0.00 0.00 42.01 4.69
5334 8042 3.414700 GTGCTCACCTCGCAACCG 61.415 66.667 0.00 0.00 39.39 4.44
5353 8061 4.760047 ACGAGTGACATGCCCGCC 62.760 66.667 0.00 0.00 0.00 6.13
5354 8062 3.188786 GACGAGTGACATGCCCGC 61.189 66.667 0.00 0.00 0.00 6.13
5355 8063 2.509336 GGACGAGTGACATGCCCG 60.509 66.667 0.00 0.00 0.00 6.13
5356 8064 2.125106 GGGACGAGTGACATGCCC 60.125 66.667 0.00 0.00 0.00 5.36
5391 8099 1.291184 TGGAACTTGCAGCGACATCG 61.291 55.000 0.00 0.00 43.27 3.84
5392 8100 0.166814 GTGGAACTTGCAGCGACATC 59.833 55.000 0.00 0.00 0.00 3.06
5393 8101 1.237285 GGTGGAACTTGCAGCGACAT 61.237 55.000 0.00 0.00 36.74 3.06
5394 8102 1.891919 GGTGGAACTTGCAGCGACA 60.892 57.895 0.00 0.00 36.74 4.35
5395 8103 2.946762 GGTGGAACTTGCAGCGAC 59.053 61.111 0.00 0.00 36.74 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.