Multiple sequence alignment - TraesCS5D01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G173200 chr5D 100.000 2543 0 0 1 2543 270260054 270257512 0.000000e+00 4697.0
1 TraesCS5D01G173200 chr5D 88.519 270 26 4 991 1256 276928106 276928374 3.160000e-84 322.0
2 TraesCS5D01G173200 chr5D 82.061 262 47 0 1269 1530 276928432 276928693 9.160000e-55 224.0
3 TraesCS5D01G173200 chr5A 92.128 1156 62 14 493 1635 359743638 359742499 0.000000e+00 1604.0
4 TraesCS5D01G173200 chr5A 87.992 533 39 17 2026 2543 359739156 359738634 7.780000e-170 606.0
5 TraesCS5D01G173200 chr5A 81.679 262 48 0 1269 1530 365610154 365610415 4.260000e-53 219.0
6 TraesCS5D01G173200 chr5A 92.126 127 7 2 1865 1989 359739284 359739159 2.600000e-40 176.0
7 TraesCS5D01G173200 chr5A 90.909 77 6 1 1804 1879 359739376 359739300 4.480000e-18 102.0
8 TraesCS5D01G173200 chr5A 94.643 56 1 2 381 435 69085815 69085869 4.510000e-13 86.1
9 TraesCS5D01G173200 chr5B 90.578 1072 64 15 571 1635 307396751 307395710 0.000000e+00 1386.0
10 TraesCS5D01G173200 chr5B 93.421 380 24 1 1 380 683000111 682999733 1.710000e-156 562.0
11 TraesCS5D01G173200 chr5B 87.129 303 27 10 985 1278 314283217 314283516 1.460000e-87 333.0
12 TraesCS5D01G173200 chr5B 81.679 262 48 0 1269 1530 314283561 314283822 4.260000e-53 219.0
13 TraesCS5D01G173200 chr5B 93.662 142 9 0 496 637 307396777 307396636 1.980000e-51 213.0
14 TraesCS5D01G173200 chr6B 91.316 380 32 1 1 380 288302503 288302125 3.750000e-143 518.0
15 TraesCS5D01G173200 chr6B 84.043 188 27 3 1060 1246 3383001 3383186 7.230000e-41 178.0
16 TraesCS5D01G173200 chr3A 87.895 380 45 1 1 380 692478520 692478142 1.790000e-121 446.0
17 TraesCS5D01G173200 chr7A 79.433 423 61 16 841 1246 689277792 689278205 2.490000e-70 276.0
18 TraesCS5D01G173200 chr7A 94.340 53 3 0 381 433 27648376 27648428 5.830000e-12 82.4
19 TraesCS5D01G173200 chr7A 94.340 53 3 0 381 433 27673012 27673064 5.830000e-12 82.4
20 TraesCS5D01G173200 chr4A 84.574 188 26 3 1060 1246 732778968 732779153 1.550000e-42 183.0
21 TraesCS5D01G173200 chr6A 84.043 188 27 3 1060 1246 286358 286543 7.230000e-41 178.0
22 TraesCS5D01G173200 chr6D 83.511 188 28 3 1060 1246 803627 803812 3.360000e-39 172.0
23 TraesCS5D01G173200 chr7B 86.813 91 12 0 1440 1530 674226922 674227012 4.480000e-18 102.0
24 TraesCS5D01G173200 chr7B 94.643 56 3 0 381 436 217862137 217862082 1.250000e-13 87.9
25 TraesCS5D01G173200 chr7B 94.643 56 3 0 381 436 235308667 235308612 1.250000e-13 87.9
26 TraesCS5D01G173200 chr7D 96.364 55 2 0 381 435 618719287 618719233 9.690000e-15 91.6
27 TraesCS5D01G173200 chr2D 94.737 57 2 1 380 435 639896761 639896705 1.250000e-13 87.9
28 TraesCS5D01G173200 chr2D 92.982 57 2 2 381 436 45323036 45323091 5.830000e-12 82.4
29 TraesCS5D01G173200 chr2A 96.296 54 1 1 375 428 409188780 409188832 1.250000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G173200 chr5D 270257512 270260054 2542 True 4697.0 4697 100.00000 1 2543 1 chr5D.!!$R1 2542
1 TraesCS5D01G173200 chr5D 276928106 276928693 587 False 273.0 322 85.29000 991 1530 2 chr5D.!!$F1 539
2 TraesCS5D01G173200 chr5A 359738634 359743638 5004 True 622.0 1604 90.78875 493 2543 4 chr5A.!!$R1 2050
3 TraesCS5D01G173200 chr5B 307395710 307396777 1067 True 799.5 1386 92.12000 496 1635 2 chr5B.!!$R2 1139
4 TraesCS5D01G173200 chr5B 314283217 314283822 605 False 276.0 333 84.40400 985 1530 2 chr5B.!!$F1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.036732 GGTGGTGCTTGAGATGGACA 59.963 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 5076 0.246635 CTGACCCTACCGTCAACCTG 59.753 60.0 0.0 0.0 42.06 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.392228 TCTGTGCAGCTACTGGGG 58.608 61.111 0.00 0.00 31.21 4.96
18 19 1.229177 TCTGTGCAGCTACTGGGGA 60.229 57.895 0.00 0.00 31.21 4.81
19 20 1.220206 CTGTGCAGCTACTGGGGAG 59.780 63.158 0.00 0.00 31.21 4.30
20 21 1.229177 TGTGCAGCTACTGGGGAGA 60.229 57.895 0.00 0.00 31.21 3.71
21 22 1.260538 TGTGCAGCTACTGGGGAGAG 61.261 60.000 0.00 0.00 31.21 3.20
22 23 1.079256 TGCAGCTACTGGGGAGAGT 59.921 57.895 0.00 0.00 31.21 3.24
23 24 1.260538 TGCAGCTACTGGGGAGAGTG 61.261 60.000 0.00 0.00 31.21 3.51
24 25 1.519719 CAGCTACTGGGGAGAGTGC 59.480 63.158 0.00 0.00 0.00 4.40
25 26 2.055042 AGCTACTGGGGAGAGTGCG 61.055 63.158 0.00 0.00 0.00 5.34
26 27 3.082579 GCTACTGGGGAGAGTGCGG 62.083 68.421 0.00 0.00 0.00 5.69
27 28 3.075005 TACTGGGGAGAGTGCGGC 61.075 66.667 0.00 0.00 0.00 6.53
50 51 4.642488 TGGTAGCCCGGGACCACA 62.642 66.667 26.40 15.78 40.87 4.17
51 52 3.782443 GGTAGCCCGGGACCACAG 61.782 72.222 29.31 0.00 35.65 3.66
52 53 2.682494 GTAGCCCGGGACCACAGA 60.682 66.667 29.31 0.00 0.00 3.41
53 54 2.363795 TAGCCCGGGACCACAGAG 60.364 66.667 29.31 0.00 0.00 3.35
54 55 3.976490 TAGCCCGGGACCACAGAGG 62.976 68.421 29.31 0.00 45.67 3.69
58 59 4.087892 CGGGACCACAGAGGCCTG 62.088 72.222 12.00 0.00 45.76 4.85
59 60 3.721706 GGGACCACAGAGGCCTGG 61.722 72.222 12.00 9.04 44.60 4.45
60 61 2.930562 GGACCACAGAGGCCTGGT 60.931 66.667 12.00 13.23 44.60 4.00
61 62 2.529744 GGACCACAGAGGCCTGGTT 61.530 63.158 12.00 0.00 44.60 3.67
62 63 1.456287 GACCACAGAGGCCTGGTTT 59.544 57.895 12.00 0.00 44.60 3.27
63 64 0.178990 GACCACAGAGGCCTGGTTTT 60.179 55.000 12.00 0.00 44.60 2.43
64 65 0.178990 ACCACAGAGGCCTGGTTTTC 60.179 55.000 12.00 0.00 44.60 2.29
65 66 0.111253 CCACAGAGGCCTGGTTTTCT 59.889 55.000 12.00 0.00 44.60 2.52
66 67 1.479389 CCACAGAGGCCTGGTTTTCTT 60.479 52.381 12.00 0.00 44.60 2.52
67 68 2.224769 CCACAGAGGCCTGGTTTTCTTA 60.225 50.000 12.00 0.00 44.60 2.10
68 69 3.562176 CCACAGAGGCCTGGTTTTCTTAT 60.562 47.826 12.00 0.00 44.60 1.73
69 70 3.691609 CACAGAGGCCTGGTTTTCTTATC 59.308 47.826 12.00 0.00 44.60 1.75
70 71 3.589288 ACAGAGGCCTGGTTTTCTTATCT 59.411 43.478 12.00 0.00 44.60 1.98
71 72 3.944015 CAGAGGCCTGGTTTTCTTATCTG 59.056 47.826 12.00 2.33 36.77 2.90
72 73 3.589288 AGAGGCCTGGTTTTCTTATCTGT 59.411 43.478 12.00 0.00 0.00 3.41
73 74 3.942115 GAGGCCTGGTTTTCTTATCTGTC 59.058 47.826 12.00 0.00 0.00 3.51
74 75 3.589288 AGGCCTGGTTTTCTTATCTGTCT 59.411 43.478 3.11 0.00 0.00 3.41
75 76 3.691609 GGCCTGGTTTTCTTATCTGTCTG 59.308 47.826 0.00 0.00 0.00 3.51
76 77 3.127721 GCCTGGTTTTCTTATCTGTCTGC 59.872 47.826 0.00 0.00 0.00 4.26
77 78 4.326826 CCTGGTTTTCTTATCTGTCTGCA 58.673 43.478 0.00 0.00 0.00 4.41
78 79 4.761739 CCTGGTTTTCTTATCTGTCTGCAA 59.238 41.667 0.00 0.00 0.00 4.08
79 80 5.241506 CCTGGTTTTCTTATCTGTCTGCAAA 59.758 40.000 0.00 0.00 0.00 3.68
80 81 6.239008 CCTGGTTTTCTTATCTGTCTGCAAAA 60.239 38.462 0.00 0.00 0.00 2.44
81 82 7.106439 TGGTTTTCTTATCTGTCTGCAAAAA 57.894 32.000 0.00 0.00 0.00 1.94
82 83 7.202526 TGGTTTTCTTATCTGTCTGCAAAAAG 58.797 34.615 0.00 0.00 0.00 2.27
83 84 6.144563 GGTTTTCTTATCTGTCTGCAAAAAGC 59.855 38.462 0.00 0.00 45.96 3.51
84 85 6.639632 TTTCTTATCTGTCTGCAAAAAGCT 57.360 33.333 0.00 0.00 45.94 3.74
85 86 5.869753 TCTTATCTGTCTGCAAAAAGCTC 57.130 39.130 0.00 0.00 45.94 4.09
86 87 4.697352 TCTTATCTGTCTGCAAAAAGCTCC 59.303 41.667 0.00 0.00 45.94 4.70
87 88 1.609208 TCTGTCTGCAAAAAGCTCCC 58.391 50.000 0.00 0.00 45.94 4.30
88 89 0.239347 CTGTCTGCAAAAAGCTCCCG 59.761 55.000 0.00 0.00 45.94 5.14
89 90 0.465460 TGTCTGCAAAAAGCTCCCGT 60.465 50.000 0.00 0.00 45.94 5.28
90 91 0.668535 GTCTGCAAAAAGCTCCCGTT 59.331 50.000 0.00 0.00 45.94 4.44
91 92 1.877443 GTCTGCAAAAAGCTCCCGTTA 59.123 47.619 0.00 0.00 45.94 3.18
92 93 2.488153 GTCTGCAAAAAGCTCCCGTTAT 59.512 45.455 0.00 0.00 45.94 1.89
93 94 2.487762 TCTGCAAAAAGCTCCCGTTATG 59.512 45.455 0.00 0.00 45.94 1.90
94 95 2.487762 CTGCAAAAAGCTCCCGTTATGA 59.512 45.455 0.00 0.00 45.94 2.15
95 96 2.887783 TGCAAAAAGCTCCCGTTATGAA 59.112 40.909 0.00 0.00 45.94 2.57
96 97 3.057596 TGCAAAAAGCTCCCGTTATGAAG 60.058 43.478 0.00 0.00 45.94 3.02
97 98 3.501950 CAAAAAGCTCCCGTTATGAAGC 58.498 45.455 0.00 0.00 0.00 3.86
98 99 2.489938 AAAGCTCCCGTTATGAAGCA 57.510 45.000 0.00 0.00 0.00 3.91
99 100 2.029838 AAGCTCCCGTTATGAAGCAG 57.970 50.000 0.00 0.00 0.00 4.24
100 101 0.905357 AGCTCCCGTTATGAAGCAGT 59.095 50.000 0.00 0.00 0.00 4.40
101 102 1.009829 GCTCCCGTTATGAAGCAGTG 58.990 55.000 0.00 0.00 0.00 3.66
102 103 1.676014 GCTCCCGTTATGAAGCAGTGT 60.676 52.381 0.00 0.00 0.00 3.55
103 104 2.699954 CTCCCGTTATGAAGCAGTGTT 58.300 47.619 0.00 0.00 0.00 3.32
104 105 2.416547 CTCCCGTTATGAAGCAGTGTTG 59.583 50.000 0.00 0.00 0.00 3.33
105 106 2.037902 TCCCGTTATGAAGCAGTGTTGA 59.962 45.455 0.00 0.00 0.00 3.18
106 107 2.416547 CCCGTTATGAAGCAGTGTTGAG 59.583 50.000 0.00 0.00 0.00 3.02
107 108 2.416547 CCGTTATGAAGCAGTGTTGAGG 59.583 50.000 0.00 0.00 0.00 3.86
108 109 3.325870 CGTTATGAAGCAGTGTTGAGGA 58.674 45.455 0.00 0.00 0.00 3.71
109 110 3.745975 CGTTATGAAGCAGTGTTGAGGAA 59.254 43.478 0.00 0.00 0.00 3.36
110 111 4.143030 CGTTATGAAGCAGTGTTGAGGAAG 60.143 45.833 0.00 0.00 0.00 3.46
111 112 1.597742 TGAAGCAGTGTTGAGGAAGC 58.402 50.000 0.00 0.00 0.00 3.86
112 113 0.877743 GAAGCAGTGTTGAGGAAGCC 59.122 55.000 0.00 0.00 0.00 4.35
113 114 0.886490 AAGCAGTGTTGAGGAAGCCG 60.886 55.000 0.00 0.00 0.00 5.52
114 115 1.301716 GCAGTGTTGAGGAAGCCGA 60.302 57.895 0.00 0.00 0.00 5.54
115 116 1.294659 GCAGTGTTGAGGAAGCCGAG 61.295 60.000 0.00 0.00 0.00 4.63
116 117 0.671781 CAGTGTTGAGGAAGCCGAGG 60.672 60.000 0.00 0.00 0.00 4.63
117 118 2.035442 GTGTTGAGGAAGCCGAGGC 61.035 63.158 5.89 5.89 42.33 4.70
139 140 4.699522 GCGGCCCTTGTCGGTCTT 62.700 66.667 0.00 0.00 40.77 3.01
140 141 2.434359 CGGCCCTTGTCGGTCTTC 60.434 66.667 0.00 0.00 35.50 2.87
141 142 2.747686 GGCCCTTGTCGGTCTTCA 59.252 61.111 0.00 0.00 0.00 3.02
142 143 1.376037 GGCCCTTGTCGGTCTTCAG 60.376 63.158 0.00 0.00 0.00 3.02
143 144 1.671742 GCCCTTGTCGGTCTTCAGA 59.328 57.895 0.00 0.00 0.00 3.27
144 145 0.670854 GCCCTTGTCGGTCTTCAGAC 60.671 60.000 0.00 0.00 44.04 3.51
145 146 0.679505 CCCTTGTCGGTCTTCAGACA 59.320 55.000 9.18 0.00 46.47 3.41
150 151 3.303881 TGTCGGTCTTCAGACAATGAG 57.696 47.619 9.18 0.00 46.47 2.90
151 152 2.628178 TGTCGGTCTTCAGACAATGAGT 59.372 45.455 9.18 0.00 46.47 3.41
152 153 3.824443 TGTCGGTCTTCAGACAATGAGTA 59.176 43.478 9.18 0.00 46.47 2.59
153 154 4.082733 TGTCGGTCTTCAGACAATGAGTAG 60.083 45.833 9.18 0.00 46.47 2.57
154 155 4.156190 GTCGGTCTTCAGACAATGAGTAGA 59.844 45.833 9.18 0.00 46.47 2.59
155 156 4.950475 TCGGTCTTCAGACAATGAGTAGAT 59.050 41.667 9.18 0.00 46.47 1.98
156 157 6.038382 GTCGGTCTTCAGACAATGAGTAGATA 59.962 42.308 9.18 0.00 46.47 1.98
157 158 6.038382 TCGGTCTTCAGACAATGAGTAGATAC 59.962 42.308 9.18 0.00 46.47 2.24
158 159 6.038825 CGGTCTTCAGACAATGAGTAGATACT 59.961 42.308 9.18 0.00 46.47 2.12
159 160 7.415765 CGGTCTTCAGACAATGAGTAGATACTT 60.416 40.741 9.18 0.00 46.47 2.24
160 161 7.918562 GGTCTTCAGACAATGAGTAGATACTTC 59.081 40.741 9.18 0.00 46.47 3.01
161 162 8.462811 GTCTTCAGACAATGAGTAGATACTTCA 58.537 37.037 1.86 0.00 44.18 3.02
162 163 9.025041 TCTTCAGACAATGAGTAGATACTTCAA 57.975 33.333 0.00 0.00 39.68 2.69
163 164 9.814899 CTTCAGACAATGAGTAGATACTTCAAT 57.185 33.333 0.00 0.00 39.68 2.57
164 165 9.591792 TTCAGACAATGAGTAGATACTTCAATG 57.408 33.333 0.00 1.36 39.68 2.82
165 166 8.200120 TCAGACAATGAGTAGATACTTCAATGG 58.800 37.037 0.00 0.00 36.50 3.16
166 167 6.989169 AGACAATGAGTAGATACTTCAATGGC 59.011 38.462 0.00 0.92 36.50 4.40
167 168 5.755375 ACAATGAGTAGATACTTCAATGGCG 59.245 40.000 0.00 0.00 36.50 5.69
168 169 5.791336 ATGAGTAGATACTTCAATGGCGA 57.209 39.130 0.00 0.00 36.50 5.54
169 170 5.188327 TGAGTAGATACTTCAATGGCGAG 57.812 43.478 0.00 0.00 36.50 5.03
170 171 4.038042 TGAGTAGATACTTCAATGGCGAGG 59.962 45.833 0.00 0.00 36.50 4.63
171 172 3.961408 AGTAGATACTTCAATGGCGAGGT 59.039 43.478 0.00 0.00 31.13 3.85
172 173 3.185246 AGATACTTCAATGGCGAGGTG 57.815 47.619 0.00 0.00 0.00 4.00
173 174 2.158900 AGATACTTCAATGGCGAGGTGG 60.159 50.000 0.00 0.00 0.00 4.61
174 175 0.981183 TACTTCAATGGCGAGGTGGT 59.019 50.000 0.00 0.00 0.00 4.16
175 176 0.606401 ACTTCAATGGCGAGGTGGTG 60.606 55.000 0.00 0.00 0.00 4.17
176 177 1.926511 CTTCAATGGCGAGGTGGTGC 61.927 60.000 0.00 0.00 0.00 5.01
177 178 2.360350 CAATGGCGAGGTGGTGCT 60.360 61.111 0.00 0.00 0.00 4.40
178 179 1.973281 CAATGGCGAGGTGGTGCTT 60.973 57.895 0.00 0.00 0.00 3.91
179 180 1.973281 AATGGCGAGGTGGTGCTTG 60.973 57.895 0.00 0.00 0.00 4.01
180 181 2.410322 AATGGCGAGGTGGTGCTTGA 62.410 55.000 0.00 0.00 0.00 3.02
181 182 2.743928 GGCGAGGTGGTGCTTGAG 60.744 66.667 0.00 0.00 0.00 3.02
182 183 2.343758 GCGAGGTGGTGCTTGAGA 59.656 61.111 0.00 0.00 0.00 3.27
183 184 1.078848 GCGAGGTGGTGCTTGAGAT 60.079 57.895 0.00 0.00 0.00 2.75
184 185 1.364626 GCGAGGTGGTGCTTGAGATG 61.365 60.000 0.00 0.00 0.00 2.90
185 186 0.742281 CGAGGTGGTGCTTGAGATGG 60.742 60.000 0.00 0.00 0.00 3.51
186 187 0.615331 GAGGTGGTGCTTGAGATGGA 59.385 55.000 0.00 0.00 0.00 3.41
187 188 0.326264 AGGTGGTGCTTGAGATGGAC 59.674 55.000 0.00 0.00 0.00 4.02
188 189 0.036732 GGTGGTGCTTGAGATGGACA 59.963 55.000 0.00 0.00 0.00 4.02
189 190 1.545428 GGTGGTGCTTGAGATGGACAA 60.545 52.381 0.00 0.00 0.00 3.18
190 191 1.537202 GTGGTGCTTGAGATGGACAAC 59.463 52.381 0.00 0.00 0.00 3.32
191 192 1.421268 TGGTGCTTGAGATGGACAACT 59.579 47.619 0.00 0.00 0.00 3.16
192 193 1.808945 GGTGCTTGAGATGGACAACTG 59.191 52.381 0.00 0.00 0.00 3.16
193 194 2.550855 GGTGCTTGAGATGGACAACTGA 60.551 50.000 0.00 0.00 0.00 3.41
194 195 3.141398 GTGCTTGAGATGGACAACTGAA 58.859 45.455 0.00 0.00 0.00 3.02
195 196 3.565482 GTGCTTGAGATGGACAACTGAAA 59.435 43.478 0.00 0.00 0.00 2.69
196 197 3.565482 TGCTTGAGATGGACAACTGAAAC 59.435 43.478 0.00 0.00 0.00 2.78
197 198 3.565482 GCTTGAGATGGACAACTGAAACA 59.435 43.478 0.00 0.00 0.00 2.83
198 199 4.217118 GCTTGAGATGGACAACTGAAACAT 59.783 41.667 0.00 0.00 0.00 2.71
199 200 5.618640 GCTTGAGATGGACAACTGAAACATC 60.619 44.000 0.00 0.00 38.50 3.06
200 201 4.971939 TGAGATGGACAACTGAAACATCA 58.028 39.130 0.00 0.00 40.17 3.07
201 202 4.756642 TGAGATGGACAACTGAAACATCAC 59.243 41.667 0.00 0.00 40.17 3.06
202 203 4.717877 AGATGGACAACTGAAACATCACA 58.282 39.130 0.00 0.00 40.17 3.58
203 204 4.758674 AGATGGACAACTGAAACATCACAG 59.241 41.667 0.00 0.00 40.17 3.66
204 205 2.618241 TGGACAACTGAAACATCACAGC 59.382 45.455 0.00 0.00 37.61 4.40
205 206 2.880890 GGACAACTGAAACATCACAGCT 59.119 45.455 0.00 0.00 37.61 4.24
206 207 3.304257 GGACAACTGAAACATCACAGCTG 60.304 47.826 13.48 13.48 37.61 4.24
207 208 3.544684 ACAACTGAAACATCACAGCTGA 58.455 40.909 23.35 0.00 37.61 4.26
208 209 3.562973 ACAACTGAAACATCACAGCTGAG 59.437 43.478 23.35 13.75 37.61 3.35
209 210 2.149578 ACTGAAACATCACAGCTGAGC 58.850 47.619 23.35 0.00 37.61 4.26
210 211 2.224475 ACTGAAACATCACAGCTGAGCT 60.224 45.455 23.35 0.00 40.77 4.09
219 220 4.861203 AGCTGAGCTGTCCTCTCA 57.139 55.556 5.97 0.00 41.35 3.27
226 227 4.586618 CTGTCCTCTCAGCAACCG 57.413 61.111 0.00 0.00 0.00 4.44
227 228 1.668294 CTGTCCTCTCAGCAACCGT 59.332 57.895 0.00 0.00 0.00 4.83
228 229 0.389166 CTGTCCTCTCAGCAACCGTC 60.389 60.000 0.00 0.00 0.00 4.79
229 230 1.079750 GTCCTCTCAGCAACCGTCC 60.080 63.158 0.00 0.00 0.00 4.79
230 231 2.266055 CCTCTCAGCAACCGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
231 232 2.125912 CTCTCAGCAACCGTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
244 245 4.853142 TCCCGGACCGCCTGCTAT 62.853 66.667 8.86 0.00 0.00 2.97
245 246 4.609018 CCCGGACCGCCTGCTATG 62.609 72.222 8.86 0.00 0.00 2.23
246 247 4.609018 CCGGACCGCCTGCTATGG 62.609 72.222 8.86 0.00 0.00 2.74
255 256 2.503895 GCCTGCTATGGCCTAATCAT 57.496 50.000 3.32 0.00 46.82 2.45
256 257 2.089980 GCCTGCTATGGCCTAATCATG 58.910 52.381 3.32 0.00 46.82 3.07
257 258 2.719739 CCTGCTATGGCCTAATCATGG 58.280 52.381 3.32 0.00 37.74 3.66
258 259 2.306805 CCTGCTATGGCCTAATCATGGA 59.693 50.000 3.32 0.00 37.74 3.41
259 260 3.053842 CCTGCTATGGCCTAATCATGGAT 60.054 47.826 3.32 0.00 37.74 3.41
260 261 4.164796 CCTGCTATGGCCTAATCATGGATA 59.835 45.833 3.32 0.00 37.74 2.59
261 262 5.163120 CCTGCTATGGCCTAATCATGGATAT 60.163 44.000 3.32 0.00 37.74 1.63
262 263 5.687780 TGCTATGGCCTAATCATGGATATG 58.312 41.667 3.32 0.00 37.74 1.78
263 264 5.429435 TGCTATGGCCTAATCATGGATATGA 59.571 40.000 3.32 0.00 41.59 2.15
264 265 6.069498 TGCTATGGCCTAATCATGGATATGAA 60.069 38.462 3.32 0.00 41.12 2.57
265 266 6.830324 GCTATGGCCTAATCATGGATATGAAA 59.170 38.462 3.32 0.00 45.82 2.69
266 267 7.013083 GCTATGGCCTAATCATGGATATGAAAG 59.987 40.741 3.32 0.00 45.82 2.62
267 268 6.452757 TGGCCTAATCATGGATATGAAAGA 57.547 37.500 3.32 0.00 45.82 2.52
268 269 6.479006 TGGCCTAATCATGGATATGAAAGAG 58.521 40.000 3.32 0.00 45.82 2.85
269 270 5.884792 GGCCTAATCATGGATATGAAAGAGG 59.115 44.000 0.00 0.00 45.82 3.69
270 271 5.356470 GCCTAATCATGGATATGAAAGAGGC 59.644 44.000 17.23 17.23 46.99 4.70
271 272 5.583854 CCTAATCATGGATATGAAAGAGGCG 59.416 44.000 0.00 0.00 45.82 5.52
272 273 4.897509 ATCATGGATATGAAAGAGGCGA 57.102 40.909 0.00 0.00 45.82 5.54
273 274 4.897509 TCATGGATATGAAAGAGGCGAT 57.102 40.909 0.00 0.00 40.26 4.58
274 275 4.572909 TCATGGATATGAAAGAGGCGATG 58.427 43.478 0.00 0.00 40.26 3.84
275 276 4.284234 TCATGGATATGAAAGAGGCGATGA 59.716 41.667 0.00 0.00 40.26 2.92
276 277 4.687901 TGGATATGAAAGAGGCGATGAA 57.312 40.909 0.00 0.00 0.00 2.57
277 278 4.635223 TGGATATGAAAGAGGCGATGAAG 58.365 43.478 0.00 0.00 0.00 3.02
278 279 3.999663 GGATATGAAAGAGGCGATGAAGG 59.000 47.826 0.00 0.00 0.00 3.46
279 280 2.338577 ATGAAAGAGGCGATGAAGGG 57.661 50.000 0.00 0.00 0.00 3.95
280 281 0.984230 TGAAAGAGGCGATGAAGGGT 59.016 50.000 0.00 0.00 0.00 4.34
281 282 1.351017 TGAAAGAGGCGATGAAGGGTT 59.649 47.619 0.00 0.00 0.00 4.11
282 283 2.224769 TGAAAGAGGCGATGAAGGGTTT 60.225 45.455 0.00 0.00 0.00 3.27
283 284 2.115343 AAGAGGCGATGAAGGGTTTC 57.885 50.000 0.00 0.00 0.00 2.78
284 285 0.984230 AGAGGCGATGAAGGGTTTCA 59.016 50.000 0.00 0.00 46.67 2.69
285 286 1.087501 GAGGCGATGAAGGGTTTCAC 58.912 55.000 0.00 0.00 45.54 3.18
286 287 0.693049 AGGCGATGAAGGGTTTCACT 59.307 50.000 0.00 0.00 45.54 3.41
287 288 0.804989 GGCGATGAAGGGTTTCACTG 59.195 55.000 0.00 0.00 45.54 3.66
288 289 0.169009 GCGATGAAGGGTTTCACTGC 59.831 55.000 0.00 0.00 45.54 4.40
289 290 1.522668 CGATGAAGGGTTTCACTGCA 58.477 50.000 0.00 0.00 45.54 4.41
290 291 2.086869 CGATGAAGGGTTTCACTGCAT 58.913 47.619 0.00 0.00 45.54 3.96
291 292 2.159476 CGATGAAGGGTTTCACTGCATG 60.159 50.000 0.00 0.00 45.54 4.06
292 293 0.961019 TGAAGGGTTTCACTGCATGC 59.039 50.000 11.82 11.82 38.37 4.06
293 294 0.961019 GAAGGGTTTCACTGCATGCA 59.039 50.000 21.29 21.29 33.38 3.96
294 295 4.929607 ATGAAGGGTTTCACTGCATGCAG 61.930 47.826 39.47 39.47 45.54 4.41
304 305 4.131376 GCATGCAGCGTCCAGTAT 57.869 55.556 14.21 0.00 0.00 2.12
305 306 1.645455 GCATGCAGCGTCCAGTATG 59.355 57.895 14.21 0.00 0.00 2.39
320 321 4.196626 CAGTATGGTAACCGGAAGAACA 57.803 45.455 9.46 0.89 0.00 3.18
321 322 4.571919 CAGTATGGTAACCGGAAGAACAA 58.428 43.478 9.46 0.00 0.00 2.83
322 323 4.390909 CAGTATGGTAACCGGAAGAACAAC 59.609 45.833 9.46 0.00 0.00 3.32
323 324 1.868469 TGGTAACCGGAAGAACAACG 58.132 50.000 9.46 0.00 0.00 4.10
324 325 1.411977 TGGTAACCGGAAGAACAACGA 59.588 47.619 9.46 0.00 0.00 3.85
325 326 2.158986 TGGTAACCGGAAGAACAACGAA 60.159 45.455 9.46 0.00 0.00 3.85
326 327 2.221749 GGTAACCGGAAGAACAACGAAC 59.778 50.000 9.46 0.00 0.00 3.95
327 328 2.320745 AACCGGAAGAACAACGAACT 57.679 45.000 9.46 0.00 0.00 3.01
328 329 1.578583 ACCGGAAGAACAACGAACTG 58.421 50.000 9.46 0.00 0.00 3.16
329 330 0.865769 CCGGAAGAACAACGAACTGG 59.134 55.000 0.00 0.00 0.00 4.00
330 331 0.234884 CGGAAGAACAACGAACTGGC 59.765 55.000 0.00 0.00 0.00 4.85
331 332 0.234884 GGAAGAACAACGAACTGGCG 59.765 55.000 0.00 0.00 37.29 5.69
332 333 0.384353 GAAGAACAACGAACTGGCGC 60.384 55.000 0.00 0.00 33.86 6.53
333 334 1.092921 AAGAACAACGAACTGGCGCA 61.093 50.000 10.83 0.00 33.86 6.09
334 335 0.884704 AGAACAACGAACTGGCGCAT 60.885 50.000 10.83 0.00 33.86 4.73
335 336 0.725784 GAACAACGAACTGGCGCATG 60.726 55.000 10.83 3.03 33.86 4.06
336 337 1.163420 AACAACGAACTGGCGCATGA 61.163 50.000 10.83 0.00 33.86 3.07
337 338 1.163420 ACAACGAACTGGCGCATGAA 61.163 50.000 10.83 0.00 33.86 2.57
338 339 0.725784 CAACGAACTGGCGCATGAAC 60.726 55.000 10.83 0.00 33.86 3.18
339 340 0.884704 AACGAACTGGCGCATGAACT 60.885 50.000 10.83 0.00 33.86 3.01
340 341 1.133253 CGAACTGGCGCATGAACTG 59.867 57.895 10.83 0.00 0.00 3.16
341 342 1.503542 GAACTGGCGCATGAACTGG 59.496 57.895 10.83 0.00 0.00 4.00
342 343 2.533391 GAACTGGCGCATGAACTGGC 62.533 60.000 10.83 0.00 0.00 4.85
349 350 4.170062 CATGAACTGGCGGCGCTG 62.170 66.667 32.30 25.15 0.00 5.18
350 351 4.393155 ATGAACTGGCGGCGCTGA 62.393 61.111 32.30 17.47 0.00 4.26
351 352 3.899981 ATGAACTGGCGGCGCTGAA 62.900 57.895 32.30 16.45 0.00 3.02
352 353 4.090057 GAACTGGCGGCGCTGAAC 62.090 66.667 32.30 15.58 0.00 3.18
353 354 4.927782 AACTGGCGGCGCTGAACA 62.928 61.111 32.30 19.54 0.00 3.18
359 360 2.571757 CGGCGCTGAACAGGAGTA 59.428 61.111 11.90 0.00 0.00 2.59
360 361 1.141881 CGGCGCTGAACAGGAGTAT 59.858 57.895 11.90 0.00 0.00 2.12
361 362 1.148157 CGGCGCTGAACAGGAGTATG 61.148 60.000 11.90 0.00 0.00 2.39
362 363 0.811616 GGCGCTGAACAGGAGTATGG 60.812 60.000 7.64 0.00 0.00 2.74
363 364 0.811616 GCGCTGAACAGGAGTATGGG 60.812 60.000 0.00 0.00 0.00 4.00
364 365 0.537188 CGCTGAACAGGAGTATGGGT 59.463 55.000 3.99 0.00 0.00 4.51
365 366 1.740380 CGCTGAACAGGAGTATGGGTG 60.740 57.143 3.99 0.00 0.00 4.61
366 367 1.555075 GCTGAACAGGAGTATGGGTGA 59.445 52.381 3.99 0.00 0.00 4.02
367 368 2.678190 GCTGAACAGGAGTATGGGTGAC 60.678 54.545 3.99 0.00 0.00 3.67
368 369 2.567169 CTGAACAGGAGTATGGGTGACA 59.433 50.000 0.00 0.00 0.00 3.58
369 370 2.976185 TGAACAGGAGTATGGGTGACAA 59.024 45.455 0.00 0.00 0.00 3.18
370 371 3.392947 TGAACAGGAGTATGGGTGACAAA 59.607 43.478 0.00 0.00 0.00 2.83
371 372 3.703001 ACAGGAGTATGGGTGACAAAG 57.297 47.619 0.00 0.00 0.00 2.77
372 373 2.979678 ACAGGAGTATGGGTGACAAAGT 59.020 45.455 0.00 0.00 0.00 2.66
373 374 3.244561 ACAGGAGTATGGGTGACAAAGTG 60.245 47.826 0.00 0.00 0.00 3.16
374 375 2.979678 AGGAGTATGGGTGACAAAGTGT 59.020 45.455 0.00 0.00 0.00 3.55
375 376 3.394606 AGGAGTATGGGTGACAAAGTGTT 59.605 43.478 0.00 0.00 0.00 3.32
376 377 3.502211 GGAGTATGGGTGACAAAGTGTTG 59.498 47.826 0.00 0.00 40.84 3.33
377 378 4.385825 GAGTATGGGTGACAAAGTGTTGA 58.614 43.478 0.00 0.00 38.20 3.18
378 379 4.985538 AGTATGGGTGACAAAGTGTTGAT 58.014 39.130 0.00 0.00 38.20 2.57
379 380 5.385198 AGTATGGGTGACAAAGTGTTGATT 58.615 37.500 0.00 0.00 38.20 2.57
380 381 6.539173 AGTATGGGTGACAAAGTGTTGATTA 58.461 36.000 0.00 0.00 38.20 1.75
381 382 5.705609 ATGGGTGACAAAGTGTTGATTAC 57.294 39.130 0.00 0.00 38.20 1.89
382 383 4.787551 TGGGTGACAAAGTGTTGATTACT 58.212 39.130 0.00 0.00 38.20 2.24
383 384 5.931294 TGGGTGACAAAGTGTTGATTACTA 58.069 37.500 0.00 0.00 38.20 1.82
384 385 6.539173 TGGGTGACAAAGTGTTGATTACTAT 58.461 36.000 0.00 0.00 38.20 2.12
385 386 7.681679 TGGGTGACAAAGTGTTGATTACTATA 58.318 34.615 0.00 0.00 38.20 1.31
386 387 7.604927 TGGGTGACAAAGTGTTGATTACTATAC 59.395 37.037 0.00 0.00 38.20 1.47
387 388 7.822822 GGGTGACAAAGTGTTGATTACTATACT 59.177 37.037 0.00 0.00 38.20 2.12
388 389 9.865321 GGTGACAAAGTGTTGATTACTATACTA 57.135 33.333 0.00 0.00 38.20 1.82
420 421 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
421 422 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
422 423 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
423 424 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
424 425 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
425 426 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
426 427 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
427 428 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
428 429 5.896073 ATATTTTGGGACAGAGGGAGTAG 57.104 43.478 0.00 0.00 42.39 2.57
429 430 2.715763 TTTGGGACAGAGGGAGTAGT 57.284 50.000 0.00 0.00 42.39 2.73
430 431 2.715763 TTGGGACAGAGGGAGTAGTT 57.284 50.000 0.00 0.00 42.39 2.24
431 432 2.715763 TGGGACAGAGGGAGTAGTTT 57.284 50.000 0.00 0.00 0.00 2.66
432 433 2.986050 TGGGACAGAGGGAGTAGTTTT 58.014 47.619 0.00 0.00 0.00 2.43
433 434 3.323775 TGGGACAGAGGGAGTAGTTTTT 58.676 45.455 0.00 0.00 0.00 1.94
434 435 4.495565 TGGGACAGAGGGAGTAGTTTTTA 58.504 43.478 0.00 0.00 0.00 1.52
435 436 5.098663 TGGGACAGAGGGAGTAGTTTTTAT 58.901 41.667 0.00 0.00 0.00 1.40
436 437 5.189145 TGGGACAGAGGGAGTAGTTTTTATC 59.811 44.000 0.00 0.00 0.00 1.75
437 438 5.425862 GGGACAGAGGGAGTAGTTTTTATCT 59.574 44.000 0.00 0.00 0.00 1.98
438 439 6.610425 GGGACAGAGGGAGTAGTTTTTATCTA 59.390 42.308 0.00 0.00 0.00 1.98
439 440 7.417683 GGGACAGAGGGAGTAGTTTTTATCTAC 60.418 44.444 0.00 0.00 38.30 2.59
440 441 7.342541 GGACAGAGGGAGTAGTTTTTATCTACT 59.657 40.741 5.47 5.47 46.99 2.57
449 450 8.880991 AGTAGTTTTTATCTACTCTGTCCTCA 57.119 34.615 0.00 0.00 42.74 3.86
450 451 9.310449 AGTAGTTTTTATCTACTCTGTCCTCAA 57.690 33.333 0.00 0.00 42.74 3.02
451 452 9.924650 GTAGTTTTTATCTACTCTGTCCTCAAA 57.075 33.333 0.00 0.00 36.03 2.69
453 454 9.274206 AGTTTTTATCTACTCTGTCCTCAAAAC 57.726 33.333 0.00 0.00 32.86 2.43
454 455 9.052759 GTTTTTATCTACTCTGTCCTCAAAACA 57.947 33.333 0.00 0.00 32.92 2.83
455 456 9.621629 TTTTTATCTACTCTGTCCTCAAAACAA 57.378 29.630 0.00 0.00 0.00 2.83
456 457 9.621629 TTTTATCTACTCTGTCCTCAAAACAAA 57.378 29.630 0.00 0.00 0.00 2.83
457 458 9.621629 TTTATCTACTCTGTCCTCAAAACAAAA 57.378 29.630 0.00 0.00 0.00 2.44
458 459 6.920569 TCTACTCTGTCCTCAAAACAAAAC 57.079 37.500 0.00 0.00 0.00 2.43
459 460 6.411376 TCTACTCTGTCCTCAAAACAAAACA 58.589 36.000 0.00 0.00 0.00 2.83
460 461 5.975693 ACTCTGTCCTCAAAACAAAACAA 57.024 34.783 0.00 0.00 0.00 2.83
461 462 6.339587 ACTCTGTCCTCAAAACAAAACAAA 57.660 33.333 0.00 0.00 0.00 2.83
462 463 6.754193 ACTCTGTCCTCAAAACAAAACAAAA 58.246 32.000 0.00 0.00 0.00 2.44
463 464 7.213678 ACTCTGTCCTCAAAACAAAACAAAAA 58.786 30.769 0.00 0.00 0.00 1.94
464 465 7.384932 ACTCTGTCCTCAAAACAAAACAAAAAG 59.615 33.333 0.00 0.00 0.00 2.27
465 466 6.648725 TCTGTCCTCAAAACAAAACAAAAAGG 59.351 34.615 0.00 0.00 0.00 3.11
466 467 6.525629 TGTCCTCAAAACAAAACAAAAAGGA 58.474 32.000 0.00 0.00 0.00 3.36
467 468 6.648725 TGTCCTCAAAACAAAACAAAAAGGAG 59.351 34.615 0.00 0.00 31.37 3.69
468 469 6.092122 GTCCTCAAAACAAAACAAAAAGGAGG 59.908 38.462 0.00 0.00 39.56 4.30
469 470 6.014156 TCCTCAAAACAAAACAAAAAGGAGGA 60.014 34.615 0.00 0.00 43.44 3.71
470 471 6.313658 CCTCAAAACAAAACAAAAAGGAGGAG 59.686 38.462 0.00 0.00 40.41 3.69
471 472 5.641636 TCAAAACAAAACAAAAAGGAGGAGC 59.358 36.000 0.00 0.00 0.00 4.70
472 473 3.436700 ACAAAACAAAAAGGAGGAGCG 57.563 42.857 0.00 0.00 0.00 5.03
473 474 3.020984 ACAAAACAAAAAGGAGGAGCGA 58.979 40.909 0.00 0.00 0.00 4.93
474 475 3.066760 ACAAAACAAAAAGGAGGAGCGAG 59.933 43.478 0.00 0.00 0.00 5.03
475 476 1.239347 AACAAAAAGGAGGAGCGAGC 58.761 50.000 0.00 0.00 0.00 5.03
476 477 0.108585 ACAAAAAGGAGGAGCGAGCA 59.891 50.000 0.00 0.00 0.00 4.26
477 478 0.519077 CAAAAAGGAGGAGCGAGCAC 59.481 55.000 0.00 0.00 0.00 4.40
478 479 0.398318 AAAAAGGAGGAGCGAGCACT 59.602 50.000 0.00 0.00 0.00 4.40
479 480 0.036858 AAAAGGAGGAGCGAGCACTC 60.037 55.000 10.10 10.10 35.86 3.51
508 509 1.933247 CCTCTTCTTGTCTGATCCGC 58.067 55.000 0.00 0.00 0.00 5.54
635 687 4.192000 GTGATCACCACGCTCCTG 57.808 61.111 15.31 0.00 35.86 3.86
636 688 1.448540 GTGATCACCACGCTCCTGG 60.449 63.158 15.31 0.00 35.86 4.45
637 689 1.609210 TGATCACCACGCTCCTGGA 60.609 57.895 0.00 0.00 35.04 3.86
638 690 1.153549 GATCACCACGCTCCTGGAC 60.154 63.158 0.00 0.00 35.04 4.02
639 691 2.890847 GATCACCACGCTCCTGGACG 62.891 65.000 14.31 14.31 35.04 4.79
671 723 4.742201 CAGGACGTGCCTCCGGTG 62.742 72.222 2.38 0.00 46.97 4.94
673 725 4.309950 GGACGTGCCTCCGGTGTT 62.310 66.667 0.00 0.00 0.00 3.32
674 726 3.041940 GACGTGCCTCCGGTGTTG 61.042 66.667 0.00 0.00 0.00 3.33
676 728 4.988598 CGTGCCTCCGGTGTTGCT 62.989 66.667 0.00 0.00 0.00 3.91
677 729 3.050275 GTGCCTCCGGTGTTGCTC 61.050 66.667 0.00 0.00 0.00 4.26
678 730 3.555324 TGCCTCCGGTGTTGCTCA 61.555 61.111 0.00 0.00 0.00 4.26
679 731 3.050275 GCCTCCGGTGTTGCTCAC 61.050 66.667 0.00 4.47 45.47 3.51
784 842 4.293415 CACTCTCAATGTTTGAAAGGCAC 58.707 43.478 0.00 0.00 39.58 5.01
785 843 3.953612 ACTCTCAATGTTTGAAAGGCACA 59.046 39.130 0.00 0.00 39.58 4.57
786 844 4.202050 ACTCTCAATGTTTGAAAGGCACAC 60.202 41.667 0.00 0.00 39.58 3.82
787 845 3.044986 CTCAATGTTTGAAAGGCACACG 58.955 45.455 0.00 0.00 39.58 4.49
800 859 1.334054 GCACACGTACGTACTCTTGG 58.666 55.000 22.34 9.38 0.00 3.61
827 886 2.687935 TCCGTGAGATCGATCATTGTCA 59.312 45.455 26.47 17.82 0.00 3.58
898 957 1.810031 CGGTCTCTTGTTGCCTTGTCA 60.810 52.381 0.00 0.00 0.00 3.58
900 959 2.485479 GGTCTCTTGTTGCCTTGTCAGA 60.485 50.000 0.00 0.00 0.00 3.27
982 1042 2.010497 TCAAGAGTCGACGAGATCCAG 58.990 52.381 10.46 0.00 0.00 3.86
985 1045 2.024871 GTCGACGAGATCCAGGCG 59.975 66.667 0.00 6.92 40.84 5.52
986 1046 2.124860 TCGACGAGATCCAGGCGA 60.125 61.111 11.38 11.38 46.61 5.54
987 1047 1.526225 TCGACGAGATCCAGGCGAT 60.526 57.895 11.38 0.00 43.64 4.58
988 1048 1.081774 CGACGAGATCCAGGCGATC 60.082 63.158 7.43 0.00 46.86 3.69
1251 1320 3.335534 AACAAGCACGTCGTCGCC 61.336 61.111 13.70 0.00 41.18 5.54
1574 1715 5.864628 AGATTTCGTAGGTTTTCTTGCTC 57.135 39.130 0.00 0.00 0.00 4.26
1606 1747 2.919228 ACGGATGATTAGGCTGGTTTC 58.081 47.619 0.00 0.00 0.00 2.78
1617 1758 3.487372 AGGCTGGTTTCTTTACTTGGTC 58.513 45.455 0.00 0.00 0.00 4.02
1635 1776 0.658897 TCGTTTGGAGCGGTGAAAAC 59.341 50.000 10.29 10.29 0.00 2.43
1636 1777 0.656205 CGTTTGGAGCGGTGAAAACG 60.656 55.000 21.93 21.93 45.82 3.60
1641 4711 1.265635 TGGAGCGGTGAAAACGATTTG 59.734 47.619 0.00 0.00 0.00 2.32
1649 4719 3.906008 GGTGAAAACGATTTGTCATGACG 59.094 43.478 20.54 10.95 0.00 4.35
1651 4721 5.201910 GTGAAAACGATTTGTCATGACGAA 58.798 37.500 26.87 26.87 38.90 3.85
1663 4733 8.940768 TTTGTCATGACGAATCTAATGATACA 57.059 30.769 22.25 0.00 32.07 2.29
1664 4734 8.940768 TTGTCATGACGAATCTAATGATACAA 57.059 30.769 20.54 1.69 32.07 2.41
1707 4777 6.934645 TGAGATATTTCGAGGCGGAATTAATT 59.065 34.615 0.00 0.00 36.41 1.40
1711 4781 5.890424 TTTCGAGGCGGAATTAATTCTTT 57.110 34.783 23.85 10.03 37.00 2.52
1712 4782 4.875544 TCGAGGCGGAATTAATTCTTTG 57.124 40.909 23.85 16.12 37.00 2.77
1713 4783 3.064820 TCGAGGCGGAATTAATTCTTTGC 59.935 43.478 23.85 22.60 37.00 3.68
1714 4784 3.706698 GAGGCGGAATTAATTCTTTGCC 58.293 45.455 30.81 30.81 43.31 4.52
1715 4785 3.365472 AGGCGGAATTAATTCTTTGCCT 58.635 40.909 32.83 32.83 45.59 4.75
1718 4788 4.566759 GGCGGAATTAATTCTTTGCCTTTC 59.433 41.667 30.72 17.20 41.62 2.62
1731 4801 9.612066 ATTCTTTGCCTTTCTTTATTTGTTTCA 57.388 25.926 0.00 0.00 0.00 2.69
1752 4822 9.573133 GTTTCAGTAACAAATATCCCATCTTTG 57.427 33.333 0.00 0.00 36.71 2.77
1765 4835 5.540911 TCCCATCTTTGTTTGAAGCAAATC 58.459 37.500 7.63 0.00 35.74 2.17
1786 4856 4.468643 TCGTGCCGTTAACAAATCATTTC 58.531 39.130 6.39 0.00 0.00 2.17
1787 4857 4.023963 TCGTGCCGTTAACAAATCATTTCA 60.024 37.500 6.39 0.00 0.00 2.69
1788 4858 4.087930 CGTGCCGTTAACAAATCATTTCAC 59.912 41.667 6.39 0.00 0.00 3.18
1789 4859 5.219633 GTGCCGTTAACAAATCATTTCACT 58.780 37.500 6.39 0.00 0.00 3.41
1790 4860 5.342259 GTGCCGTTAACAAATCATTTCACTC 59.658 40.000 6.39 0.00 0.00 3.51
1792 4862 5.086058 CCGTTAACAAATCATTTCACTCCG 58.914 41.667 6.39 0.00 0.00 4.63
1793 4863 5.334569 CCGTTAACAAATCATTTCACTCCGT 60.335 40.000 6.39 0.00 0.00 4.69
1794 4864 6.128499 CCGTTAACAAATCATTTCACTCCGTA 60.128 38.462 6.39 0.00 0.00 4.02
1795 4865 6.735063 CGTTAACAAATCATTTCACTCCGTAC 59.265 38.462 6.39 0.00 0.00 3.67
1796 4866 7.569774 CGTTAACAAATCATTTCACTCCGTACA 60.570 37.037 6.39 0.00 0.00 2.90
1798 4868 6.817765 ACAAATCATTTCACTCCGTACAAT 57.182 33.333 0.00 0.00 0.00 2.71
1802 4902 3.438781 TCATTTCACTCCGTACAATTGGC 59.561 43.478 10.83 1.28 0.00 4.52
1834 4934 8.946085 ACAAATACCTAACTCAATATGTGTGTG 58.054 33.333 0.00 0.00 34.23 3.82
1835 4935 7.553881 AATACCTAACTCAATATGTGTGTGC 57.446 36.000 0.00 0.00 34.23 4.57
1837 4937 3.309682 CCTAACTCAATATGTGTGTGCCG 59.690 47.826 0.00 0.00 34.23 5.69
1838 4938 1.086696 ACTCAATATGTGTGTGCCGC 58.913 50.000 0.00 0.00 32.74 6.53
1895 5026 9.265938 CGAAGATATTGCATAAATGTTTATCCG 57.734 33.333 0.00 0.00 31.28 4.18
1905 5038 9.128107 GCATAAATGTTTATCCGAACCAATATG 57.872 33.333 0.00 0.00 31.28 1.78
1916 5049 2.806945 ACCAATATGAGTGGGTGTGG 57.193 50.000 0.00 0.00 40.75 4.17
1928 5061 1.379309 GGTGTGGTGGTGGTGTGTT 60.379 57.895 0.00 0.00 0.00 3.32
1942 5075 3.886505 TGGTGTGTTGTTTCATTACCCTC 59.113 43.478 0.00 0.00 31.26 4.30
1943 5076 3.254903 GGTGTGTTGTTTCATTACCCTCC 59.745 47.826 0.00 0.00 0.00 4.30
1982 5115 4.453136 TCAGCGTTGGTGTAGGAAAATAAC 59.547 41.667 0.00 0.00 32.43 1.89
1989 5122 6.716934 TGGTGTAGGAAAATAACAAGCAAA 57.283 33.333 0.00 0.00 0.00 3.68
1991 5124 6.322712 TGGTGTAGGAAAATAACAAGCAAACT 59.677 34.615 0.00 0.00 0.00 2.66
1993 5126 8.354426 GGTGTAGGAAAATAACAAGCAAACTTA 58.646 33.333 0.00 0.00 33.74 2.24
1994 5127 9.738832 GTGTAGGAAAATAACAAGCAAACTTAA 57.261 29.630 0.00 0.00 33.74 1.85
1995 5128 9.959749 TGTAGGAAAATAACAAGCAAACTTAAG 57.040 29.630 0.00 0.00 33.74 1.85
1999 5132 9.308318 GGAAAATAACAAGCAAACTTAAGTTCA 57.692 29.630 20.78 0.92 37.25 3.18
2006 5139 8.770438 ACAAGCAAACTTAAGTTCAAAAATGA 57.230 26.923 20.78 0.00 37.25 2.57
2007 5140 9.213799 ACAAGCAAACTTAAGTTCAAAAATGAA 57.786 25.926 20.78 0.00 37.25 2.57
2011 5144 8.998989 GCAAACTTAAGTTCAAAAATGAAAAGC 58.001 29.630 20.78 1.01 37.25 3.51
2019 5152 9.611284 AAGTTCAAAAATGAAAAGCAAAACTTC 57.389 25.926 0.00 0.00 37.75 3.01
2020 5153 9.002600 AGTTCAAAAATGAAAAGCAAAACTTCT 57.997 25.926 0.00 0.00 37.75 2.85
2021 5154 9.611284 GTTCAAAAATGAAAAGCAAAACTTCTT 57.389 25.926 0.00 0.00 37.75 2.52
2022 5155 9.824534 TTCAAAAATGAAAAGCAAAACTTCTTC 57.175 25.926 0.00 0.00 37.75 2.87
2023 5156 9.218440 TCAAAAATGAAAAGCAAAACTTCTTCT 57.782 25.926 0.00 0.00 37.75 2.85
2024 5157 9.830294 CAAAAATGAAAAGCAAAACTTCTTCTT 57.170 25.926 0.00 0.00 37.75 2.52
2026 5159 9.440773 AAAATGAAAAGCAAAACTTCTTCTTCT 57.559 25.926 0.00 0.00 37.75 2.85
2027 5160 9.440773 AAATGAAAAGCAAAACTTCTTCTTCTT 57.559 25.926 0.00 0.00 37.75 2.52
2028 5161 8.640091 ATGAAAAGCAAAACTTCTTCTTCTTC 57.360 30.769 0.00 0.00 37.75 2.87
2029 5162 7.830739 TGAAAAGCAAAACTTCTTCTTCTTCT 58.169 30.769 0.00 0.00 37.75 2.85
2030 5163 8.306761 TGAAAAGCAAAACTTCTTCTTCTTCTT 58.693 29.630 0.00 0.00 37.75 2.52
2031 5164 9.144747 GAAAAGCAAAACTTCTTCTTCTTCTTT 57.855 29.630 0.00 0.00 37.75 2.52
2032 5165 9.494271 AAAAGCAAAACTTCTTCTTCTTCTTTT 57.506 25.926 0.00 0.00 37.75 2.27
2044 5177 8.122952 TCTTCTTCTTCTTTTTAAGTTGAAGCG 58.877 33.333 13.64 0.00 38.03 4.68
2059 5192 7.724305 AGTTGAAGCGAAACTTAAGATACAA 57.276 32.000 10.09 1.87 39.29 2.41
2182 5320 5.854338 GCTGTTTCAAAATTTGGATTGCATG 59.146 36.000 5.83 0.00 0.00 4.06
2183 5321 6.293516 GCTGTTTCAAAATTTGGATTGCATGA 60.294 34.615 5.83 0.00 0.00 3.07
2188 5326 6.632909 TCAAAATTTGGATTGCATGAGTAGG 58.367 36.000 5.83 0.00 0.00 3.18
2244 5382 1.067295 TCTCATGGCATGTATCCCCC 58.933 55.000 25.62 0.00 0.00 5.40
2267 5405 2.044888 CACGTTTGTGCGCCTTTTAT 57.955 45.000 4.18 0.00 39.67 1.40
2288 5426 7.621832 TTATGCGTATAATTTTCTGCAATGC 57.378 32.000 1.44 0.00 35.78 3.56
2289 5427 4.991472 TGCGTATAATTTTCTGCAATGCA 58.009 34.783 7.99 7.99 36.92 3.96
2290 5428 5.405797 TGCGTATAATTTTCTGCAATGCAA 58.594 33.333 9.92 0.00 38.41 4.08
2291 5429 6.041511 TGCGTATAATTTTCTGCAATGCAAT 58.958 32.000 9.92 0.10 38.41 3.56
2354 5492 2.041350 GAGGATCCCCATCTGAATGCAT 59.959 50.000 8.55 0.00 33.88 3.96
2356 5494 3.659195 AGGATCCCCATCTGAATGCATTA 59.341 43.478 12.97 0.00 33.88 1.90
2366 5504 4.910195 TCTGAATGCATTACTCAAGGTGT 58.090 39.130 12.97 0.00 0.00 4.16
2369 5507 4.455533 TGAATGCATTACTCAAGGTGTCAC 59.544 41.667 12.97 0.00 0.00 3.67
2385 5523 1.877443 GTCACCGTGGCAAGTTGTTAT 59.123 47.619 4.48 0.00 0.00 1.89
2431 5569 1.268352 GGTAATGCCGCAAAGACACAA 59.732 47.619 0.00 0.00 0.00 3.33
2432 5570 2.094752 GGTAATGCCGCAAAGACACAAT 60.095 45.455 0.00 0.00 0.00 2.71
2468 5611 5.742063 AGGCTTAGTAAATCTAACACCACC 58.258 41.667 0.00 0.00 34.60 4.61
2476 5619 7.970102 AGTAAATCTAACACCACCAAAGAGTA 58.030 34.615 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.229177 TCCCCAGTAGCTGCACAGA 60.229 57.895 4.12 0.00 0.00 3.41
1 2 1.220206 CTCCCCAGTAGCTGCACAG 59.780 63.158 4.12 0.00 0.00 3.66
2 3 1.229177 TCTCCCCAGTAGCTGCACA 60.229 57.895 4.12 0.00 0.00 4.57
3 4 1.261238 ACTCTCCCCAGTAGCTGCAC 61.261 60.000 4.12 0.00 0.00 4.57
4 5 1.079256 ACTCTCCCCAGTAGCTGCA 59.921 57.895 4.12 0.00 0.00 4.41
5 6 1.519719 CACTCTCCCCAGTAGCTGC 59.480 63.158 0.00 0.00 0.00 5.25
6 7 1.519719 GCACTCTCCCCAGTAGCTG 59.480 63.158 0.00 0.00 0.00 4.24
7 8 2.055042 CGCACTCTCCCCAGTAGCT 61.055 63.158 0.00 0.00 0.00 3.32
8 9 2.496817 CGCACTCTCCCCAGTAGC 59.503 66.667 0.00 0.00 0.00 3.58
9 10 3.082579 GCCGCACTCTCCCCAGTAG 62.083 68.421 0.00 0.00 0.00 2.57
10 11 3.075005 GCCGCACTCTCCCCAGTA 61.075 66.667 0.00 0.00 0.00 2.74
33 34 4.642488 TGTGGTCCCGGGCTACCA 62.642 66.667 26.40 26.40 43.47 3.25
34 35 3.782443 CTGTGGTCCCGGGCTACC 61.782 72.222 22.00 22.00 36.24 3.18
35 36 2.682494 TCTGTGGTCCCGGGCTAC 60.682 66.667 18.49 19.26 0.00 3.58
36 37 2.363795 CTCTGTGGTCCCGGGCTA 60.364 66.667 18.49 6.20 0.00 3.93
41 42 4.087892 CAGGCCTCTGTGGTCCCG 62.088 72.222 0.00 0.00 42.71 5.14
42 43 3.721706 CCAGGCCTCTGTGGTCCC 61.722 72.222 0.00 0.00 42.71 4.46
43 44 2.069165 AAACCAGGCCTCTGTGGTCC 62.069 60.000 14.38 0.00 46.82 4.46
44 45 0.178990 AAAACCAGGCCTCTGTGGTC 60.179 55.000 14.38 0.00 46.82 4.02
46 47 0.111253 AGAAAACCAGGCCTCTGTGG 59.889 55.000 0.00 4.29 39.31 4.17
47 48 1.986882 AAGAAAACCAGGCCTCTGTG 58.013 50.000 0.00 0.00 39.31 3.66
48 49 3.589288 AGATAAGAAAACCAGGCCTCTGT 59.411 43.478 0.00 0.00 39.31 3.41
49 50 3.944015 CAGATAAGAAAACCAGGCCTCTG 59.056 47.826 0.00 0.00 40.59 3.35
50 51 3.589288 ACAGATAAGAAAACCAGGCCTCT 59.411 43.478 0.00 0.00 0.00 3.69
51 52 3.942115 GACAGATAAGAAAACCAGGCCTC 59.058 47.826 0.00 0.00 0.00 4.70
52 53 3.589288 AGACAGATAAGAAAACCAGGCCT 59.411 43.478 0.00 0.00 0.00 5.19
53 54 3.691609 CAGACAGATAAGAAAACCAGGCC 59.308 47.826 0.00 0.00 0.00 5.19
54 55 3.127721 GCAGACAGATAAGAAAACCAGGC 59.872 47.826 0.00 0.00 0.00 4.85
55 56 4.326826 TGCAGACAGATAAGAAAACCAGG 58.673 43.478 0.00 0.00 0.00 4.45
56 57 5.947228 TTGCAGACAGATAAGAAAACCAG 57.053 39.130 0.00 0.00 0.00 4.00
57 58 6.707440 TTTTGCAGACAGATAAGAAAACCA 57.293 33.333 0.00 0.00 0.00 3.67
58 59 6.144563 GCTTTTTGCAGACAGATAAGAAAACC 59.855 38.462 0.00 0.00 42.31 3.27
59 60 6.920210 AGCTTTTTGCAGACAGATAAGAAAAC 59.080 34.615 0.00 0.00 45.94 2.43
60 61 7.042797 AGCTTTTTGCAGACAGATAAGAAAA 57.957 32.000 0.00 0.00 45.94 2.29
61 62 6.294176 GGAGCTTTTTGCAGACAGATAAGAAA 60.294 38.462 0.00 0.00 45.94 2.52
62 63 5.182001 GGAGCTTTTTGCAGACAGATAAGAA 59.818 40.000 0.00 0.00 45.94 2.52
63 64 4.697352 GGAGCTTTTTGCAGACAGATAAGA 59.303 41.667 0.00 0.00 45.94 2.10
64 65 4.142513 GGGAGCTTTTTGCAGACAGATAAG 60.143 45.833 0.00 0.00 45.94 1.73
65 66 3.758554 GGGAGCTTTTTGCAGACAGATAA 59.241 43.478 0.00 0.00 45.94 1.75
66 67 3.347216 GGGAGCTTTTTGCAGACAGATA 58.653 45.455 0.00 0.00 45.94 1.98
67 68 2.165998 GGGAGCTTTTTGCAGACAGAT 58.834 47.619 0.00 0.00 45.94 2.90
68 69 1.609208 GGGAGCTTTTTGCAGACAGA 58.391 50.000 0.00 0.00 45.94 3.41
69 70 0.239347 CGGGAGCTTTTTGCAGACAG 59.761 55.000 0.00 0.00 45.94 3.51
70 71 0.465460 ACGGGAGCTTTTTGCAGACA 60.465 50.000 0.00 0.00 45.94 3.41
71 72 0.668535 AACGGGAGCTTTTTGCAGAC 59.331 50.000 0.00 0.00 45.94 3.51
72 73 2.264005 TAACGGGAGCTTTTTGCAGA 57.736 45.000 0.00 0.00 45.94 4.26
73 74 2.487762 TCATAACGGGAGCTTTTTGCAG 59.512 45.455 0.00 0.00 45.94 4.41
74 75 2.509569 TCATAACGGGAGCTTTTTGCA 58.490 42.857 0.00 0.00 45.94 4.08
75 76 3.501950 CTTCATAACGGGAGCTTTTTGC 58.498 45.455 0.00 0.00 43.29 3.68
76 77 3.057596 TGCTTCATAACGGGAGCTTTTTG 60.058 43.478 0.00 0.00 0.00 2.44
77 78 3.153919 TGCTTCATAACGGGAGCTTTTT 58.846 40.909 0.00 0.00 0.00 1.94
78 79 2.749621 CTGCTTCATAACGGGAGCTTTT 59.250 45.455 0.00 0.00 0.00 2.27
79 80 2.290323 ACTGCTTCATAACGGGAGCTTT 60.290 45.455 0.00 0.00 0.00 3.51
80 81 1.279271 ACTGCTTCATAACGGGAGCTT 59.721 47.619 0.00 0.00 0.00 3.74
81 82 0.905357 ACTGCTTCATAACGGGAGCT 59.095 50.000 0.00 0.00 0.00 4.09
82 83 1.009829 CACTGCTTCATAACGGGAGC 58.990 55.000 0.00 0.00 0.00 4.70
83 84 2.386661 ACACTGCTTCATAACGGGAG 57.613 50.000 0.00 0.00 0.00 4.30
84 85 2.037902 TCAACACTGCTTCATAACGGGA 59.962 45.455 0.00 0.00 0.00 5.14
85 86 2.416547 CTCAACACTGCTTCATAACGGG 59.583 50.000 0.00 0.00 0.00 5.28
86 87 2.416547 CCTCAACACTGCTTCATAACGG 59.583 50.000 0.00 0.00 0.00 4.44
87 88 3.325870 TCCTCAACACTGCTTCATAACG 58.674 45.455 0.00 0.00 0.00 3.18
88 89 4.378874 GCTTCCTCAACACTGCTTCATAAC 60.379 45.833 0.00 0.00 0.00 1.89
89 90 3.753272 GCTTCCTCAACACTGCTTCATAA 59.247 43.478 0.00 0.00 0.00 1.90
90 91 3.338249 GCTTCCTCAACACTGCTTCATA 58.662 45.455 0.00 0.00 0.00 2.15
91 92 2.157738 GCTTCCTCAACACTGCTTCAT 58.842 47.619 0.00 0.00 0.00 2.57
92 93 1.597742 GCTTCCTCAACACTGCTTCA 58.402 50.000 0.00 0.00 0.00 3.02
93 94 0.877743 GGCTTCCTCAACACTGCTTC 59.122 55.000 0.00 0.00 0.00 3.86
94 95 0.886490 CGGCTTCCTCAACACTGCTT 60.886 55.000 0.00 0.00 0.00 3.91
95 96 1.302033 CGGCTTCCTCAACACTGCT 60.302 57.895 0.00 0.00 0.00 4.24
96 97 1.294659 CTCGGCTTCCTCAACACTGC 61.295 60.000 0.00 0.00 0.00 4.40
97 98 0.671781 CCTCGGCTTCCTCAACACTG 60.672 60.000 0.00 0.00 0.00 3.66
98 99 1.674057 CCTCGGCTTCCTCAACACT 59.326 57.895 0.00 0.00 0.00 3.55
99 100 2.035442 GCCTCGGCTTCCTCAACAC 61.035 63.158 0.00 0.00 38.26 3.32
100 101 2.347490 GCCTCGGCTTCCTCAACA 59.653 61.111 0.00 0.00 38.26 3.33
101 102 2.815647 CGCCTCGGCTTCCTCAAC 60.816 66.667 6.35 0.00 39.32 3.18
102 103 4.760047 GCGCCTCGGCTTCCTCAA 62.760 66.667 6.35 0.00 39.32 3.02
126 127 0.679505 TGTCTGAAGACCGACAAGGG 59.320 55.000 7.96 0.00 46.96 3.95
127 128 2.526304 TTGTCTGAAGACCGACAAGG 57.474 50.000 7.96 0.00 43.10 3.61
130 131 2.628178 ACTCATTGTCTGAAGACCGACA 59.372 45.455 7.96 0.00 44.15 4.35
131 132 3.305398 ACTCATTGTCTGAAGACCGAC 57.695 47.619 7.96 0.00 44.15 4.79
132 133 4.332828 TCTACTCATTGTCTGAAGACCGA 58.667 43.478 7.96 1.93 44.15 4.69
133 134 4.703645 TCTACTCATTGTCTGAAGACCG 57.296 45.455 7.96 0.00 44.15 4.79
134 135 7.341445 AGTATCTACTCATTGTCTGAAGACC 57.659 40.000 7.96 0.00 44.15 3.85
135 136 8.462811 TGAAGTATCTACTCATTGTCTGAAGAC 58.537 37.037 3.41 3.41 39.43 3.01
136 137 8.581253 TGAAGTATCTACTCATTGTCTGAAGA 57.419 34.615 0.00 0.00 34.99 2.87
137 138 9.814899 ATTGAAGTATCTACTCATTGTCTGAAG 57.185 33.333 0.00 0.00 34.99 3.02
138 139 9.591792 CATTGAAGTATCTACTCATTGTCTGAA 57.408 33.333 0.00 0.00 34.99 3.02
139 140 8.200120 CCATTGAAGTATCTACTCATTGTCTGA 58.800 37.037 0.00 0.00 34.99 3.27
140 141 7.042187 GCCATTGAAGTATCTACTCATTGTCTG 60.042 40.741 0.00 0.00 34.99 3.51
141 142 6.989169 GCCATTGAAGTATCTACTCATTGTCT 59.011 38.462 0.00 0.00 34.99 3.41
142 143 6.074088 CGCCATTGAAGTATCTACTCATTGTC 60.074 42.308 0.00 0.00 34.99 3.18
143 144 5.755375 CGCCATTGAAGTATCTACTCATTGT 59.245 40.000 0.00 0.00 34.99 2.71
144 145 5.985530 TCGCCATTGAAGTATCTACTCATTG 59.014 40.000 0.00 0.00 34.99 2.82
145 146 6.161855 TCGCCATTGAAGTATCTACTCATT 57.838 37.500 0.00 0.00 34.99 2.57
146 147 5.279206 CCTCGCCATTGAAGTATCTACTCAT 60.279 44.000 0.00 0.00 34.99 2.90
147 148 4.038042 CCTCGCCATTGAAGTATCTACTCA 59.962 45.833 0.00 0.00 34.99 3.41
148 149 4.038162 ACCTCGCCATTGAAGTATCTACTC 59.962 45.833 0.00 0.00 34.99 2.59
149 150 3.961408 ACCTCGCCATTGAAGTATCTACT 59.039 43.478 0.00 0.00 38.39 2.57
150 151 4.051922 CACCTCGCCATTGAAGTATCTAC 58.948 47.826 0.00 0.00 0.00 2.59
151 152 3.069586 CCACCTCGCCATTGAAGTATCTA 59.930 47.826 0.00 0.00 0.00 1.98
152 153 2.158900 CCACCTCGCCATTGAAGTATCT 60.159 50.000 0.00 0.00 0.00 1.98
153 154 2.213499 CCACCTCGCCATTGAAGTATC 58.787 52.381 0.00 0.00 0.00 2.24
154 155 1.559682 ACCACCTCGCCATTGAAGTAT 59.440 47.619 0.00 0.00 0.00 2.12
155 156 0.981183 ACCACCTCGCCATTGAAGTA 59.019 50.000 0.00 0.00 0.00 2.24
156 157 0.606401 CACCACCTCGCCATTGAAGT 60.606 55.000 0.00 0.00 0.00 3.01
157 158 1.926511 GCACCACCTCGCCATTGAAG 61.927 60.000 0.00 0.00 0.00 3.02
158 159 1.971167 GCACCACCTCGCCATTGAA 60.971 57.895 0.00 0.00 0.00 2.69
159 160 2.359850 GCACCACCTCGCCATTGA 60.360 61.111 0.00 0.00 0.00 2.57
160 161 1.973281 AAGCACCACCTCGCCATTG 60.973 57.895 0.00 0.00 0.00 2.82
161 162 1.973281 CAAGCACCACCTCGCCATT 60.973 57.895 0.00 0.00 0.00 3.16
162 163 2.360350 CAAGCACCACCTCGCCAT 60.360 61.111 0.00 0.00 0.00 4.40
163 164 3.535629 CTCAAGCACCACCTCGCCA 62.536 63.158 0.00 0.00 0.00 5.69
164 165 2.527951 ATCTCAAGCACCACCTCGCC 62.528 60.000 0.00 0.00 0.00 5.54
165 166 1.078848 ATCTCAAGCACCACCTCGC 60.079 57.895 0.00 0.00 0.00 5.03
166 167 0.742281 CCATCTCAAGCACCACCTCG 60.742 60.000 0.00 0.00 0.00 4.63
167 168 0.615331 TCCATCTCAAGCACCACCTC 59.385 55.000 0.00 0.00 0.00 3.85
168 169 0.326264 GTCCATCTCAAGCACCACCT 59.674 55.000 0.00 0.00 0.00 4.00
169 170 0.036732 TGTCCATCTCAAGCACCACC 59.963 55.000 0.00 0.00 0.00 4.61
170 171 1.537202 GTTGTCCATCTCAAGCACCAC 59.463 52.381 0.00 0.00 0.00 4.16
171 172 1.421268 AGTTGTCCATCTCAAGCACCA 59.579 47.619 0.00 0.00 0.00 4.17
172 173 1.808945 CAGTTGTCCATCTCAAGCACC 59.191 52.381 0.00 0.00 0.00 5.01
173 174 2.771089 TCAGTTGTCCATCTCAAGCAC 58.229 47.619 0.00 0.00 0.00 4.40
174 175 3.490439 TTCAGTTGTCCATCTCAAGCA 57.510 42.857 0.00 0.00 0.00 3.91
175 176 3.565482 TGTTTCAGTTGTCCATCTCAAGC 59.435 43.478 0.00 0.00 0.00 4.01
176 177 5.471116 TGATGTTTCAGTTGTCCATCTCAAG 59.529 40.000 0.00 0.00 34.44 3.02
177 178 5.239306 GTGATGTTTCAGTTGTCCATCTCAA 59.761 40.000 0.00 0.00 34.44 3.02
178 179 4.756642 GTGATGTTTCAGTTGTCCATCTCA 59.243 41.667 0.00 0.00 34.44 3.27
179 180 4.756642 TGTGATGTTTCAGTTGTCCATCTC 59.243 41.667 0.00 0.00 34.44 2.75
180 181 4.717877 TGTGATGTTTCAGTTGTCCATCT 58.282 39.130 0.00 0.00 34.44 2.90
181 182 4.614535 GCTGTGATGTTTCAGTTGTCCATC 60.615 45.833 0.00 0.00 34.57 3.51
182 183 3.254166 GCTGTGATGTTTCAGTTGTCCAT 59.746 43.478 0.00 0.00 34.57 3.41
183 184 2.618241 GCTGTGATGTTTCAGTTGTCCA 59.382 45.455 0.00 0.00 34.57 4.02
184 185 2.880890 AGCTGTGATGTTTCAGTTGTCC 59.119 45.455 0.00 0.00 34.57 4.02
185 186 3.561310 TCAGCTGTGATGTTTCAGTTGTC 59.439 43.478 14.67 0.00 41.36 3.18
186 187 3.544684 TCAGCTGTGATGTTTCAGTTGT 58.455 40.909 14.67 0.00 41.36 3.32
187 188 3.608707 GCTCAGCTGTGATGTTTCAGTTG 60.609 47.826 19.61 0.00 41.74 3.16
188 189 2.551459 GCTCAGCTGTGATGTTTCAGTT 59.449 45.455 19.61 0.00 34.57 3.16
189 190 2.149578 GCTCAGCTGTGATGTTTCAGT 58.850 47.619 19.61 0.00 34.57 3.41
190 191 2.424557 AGCTCAGCTGTGATGTTTCAG 58.575 47.619 19.61 4.49 37.57 3.02
191 192 2.556144 AGCTCAGCTGTGATGTTTCA 57.444 45.000 19.61 0.00 37.57 2.69
202 203 4.861203 TGAGAGGACAGCTCAGCT 57.139 55.556 0.00 0.00 40.77 4.24
209 210 0.389166 GACGGTTGCTGAGAGGACAG 60.389 60.000 0.00 0.00 40.43 3.51
210 211 1.666011 GACGGTTGCTGAGAGGACA 59.334 57.895 0.00 0.00 0.00 4.02
211 212 1.079750 GGACGGTTGCTGAGAGGAC 60.080 63.158 0.00 0.00 0.00 3.85
212 213 2.283529 GGGACGGTTGCTGAGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
213 214 2.266055 GGGACGGTTGCTGAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
227 228 4.853142 ATAGCAGGCGGTCCGGGA 62.853 66.667 14.38 0.00 37.47 5.14
228 229 4.609018 CATAGCAGGCGGTCCGGG 62.609 72.222 14.38 0.00 37.47 5.73
229 230 4.609018 CCATAGCAGGCGGTCCGG 62.609 72.222 14.38 0.00 37.47 5.14
237 238 2.306805 TCCATGATTAGGCCATAGCAGG 59.693 50.000 5.01 2.34 42.56 4.85
238 239 3.708403 TCCATGATTAGGCCATAGCAG 57.292 47.619 5.01 0.00 42.56 4.24
239 240 5.429435 TCATATCCATGATTAGGCCATAGCA 59.571 40.000 5.01 0.43 37.17 3.49
240 241 5.933617 TCATATCCATGATTAGGCCATAGC 58.066 41.667 5.01 0.00 36.22 2.97
241 242 8.270030 TCTTTCATATCCATGATTAGGCCATAG 58.730 37.037 5.01 0.00 40.85 2.23
242 243 8.161640 TCTTTCATATCCATGATTAGGCCATA 57.838 34.615 5.01 0.00 40.85 2.74
243 244 7.036154 TCTTTCATATCCATGATTAGGCCAT 57.964 36.000 5.01 0.00 40.85 4.40
244 245 6.452757 TCTTTCATATCCATGATTAGGCCA 57.547 37.500 5.01 0.00 40.85 5.36
245 246 5.884792 CCTCTTTCATATCCATGATTAGGCC 59.115 44.000 0.00 0.00 40.85 5.19
246 247 5.356470 GCCTCTTTCATATCCATGATTAGGC 59.644 44.000 14.43 14.43 44.62 3.93
247 248 5.583854 CGCCTCTTTCATATCCATGATTAGG 59.416 44.000 0.00 0.00 40.85 2.69
248 249 6.401394 TCGCCTCTTTCATATCCATGATTAG 58.599 40.000 0.00 0.00 40.85 1.73
249 250 6.358974 TCGCCTCTTTCATATCCATGATTA 57.641 37.500 0.00 0.00 40.85 1.75
250 251 5.233083 TCGCCTCTTTCATATCCATGATT 57.767 39.130 0.00 0.00 40.85 2.57
251 252 4.897509 TCGCCTCTTTCATATCCATGAT 57.102 40.909 0.00 0.00 40.85 2.45
252 253 4.284234 TCATCGCCTCTTTCATATCCATGA 59.716 41.667 0.00 0.00 39.47 3.07
253 254 4.572909 TCATCGCCTCTTTCATATCCATG 58.427 43.478 0.00 0.00 0.00 3.66
254 255 4.897509 TCATCGCCTCTTTCATATCCAT 57.102 40.909 0.00 0.00 0.00 3.41
255 256 4.503817 CCTTCATCGCCTCTTTCATATCCA 60.504 45.833 0.00 0.00 0.00 3.41
256 257 3.999663 CCTTCATCGCCTCTTTCATATCC 59.000 47.826 0.00 0.00 0.00 2.59
257 258 3.999663 CCCTTCATCGCCTCTTTCATATC 59.000 47.826 0.00 0.00 0.00 1.63
258 259 3.392616 ACCCTTCATCGCCTCTTTCATAT 59.607 43.478 0.00 0.00 0.00 1.78
259 260 2.771943 ACCCTTCATCGCCTCTTTCATA 59.228 45.455 0.00 0.00 0.00 2.15
260 261 1.561542 ACCCTTCATCGCCTCTTTCAT 59.438 47.619 0.00 0.00 0.00 2.57
261 262 0.984230 ACCCTTCATCGCCTCTTTCA 59.016 50.000 0.00 0.00 0.00 2.69
262 263 2.115343 AACCCTTCATCGCCTCTTTC 57.885 50.000 0.00 0.00 0.00 2.62
263 264 2.224769 TGAAACCCTTCATCGCCTCTTT 60.225 45.455 0.00 0.00 36.62 2.52
264 265 1.351017 TGAAACCCTTCATCGCCTCTT 59.649 47.619 0.00 0.00 36.62 2.85
265 266 0.984230 TGAAACCCTTCATCGCCTCT 59.016 50.000 0.00 0.00 36.62 3.69
266 267 1.087501 GTGAAACCCTTCATCGCCTC 58.912 55.000 0.00 0.00 43.39 4.70
267 268 0.693049 AGTGAAACCCTTCATCGCCT 59.307 50.000 0.00 0.00 43.39 5.52
268 269 0.804989 CAGTGAAACCCTTCATCGCC 59.195 55.000 0.00 0.00 43.39 5.54
269 270 0.169009 GCAGTGAAACCCTTCATCGC 59.831 55.000 0.00 0.00 43.39 4.58
270 271 1.522668 TGCAGTGAAACCCTTCATCG 58.477 50.000 0.00 0.00 43.39 3.84
271 272 2.416431 GCATGCAGTGAAACCCTTCATC 60.416 50.000 14.21 0.00 43.39 2.92
272 273 1.547372 GCATGCAGTGAAACCCTTCAT 59.453 47.619 14.21 0.00 43.39 2.57
273 274 0.961019 GCATGCAGTGAAACCCTTCA 59.039 50.000 14.21 0.00 39.30 3.02
274 275 0.961019 TGCATGCAGTGAAACCCTTC 59.039 50.000 18.46 0.00 37.80 3.46
275 276 0.963962 CTGCATGCAGTGAAACCCTT 59.036 50.000 34.76 0.00 37.80 3.95
276 277 1.530013 GCTGCATGCAGTGAAACCCT 61.530 55.000 39.95 0.00 45.24 4.34
277 278 1.080298 GCTGCATGCAGTGAAACCC 60.080 57.895 39.95 22.84 45.24 4.11
278 279 4.565531 GCTGCATGCAGTGAAACC 57.434 55.556 39.95 23.49 45.24 3.27
284 285 2.745100 CTGGACGCTGCATGCAGT 60.745 61.111 39.95 27.39 45.24 4.40
285 286 0.812811 ATACTGGACGCTGCATGCAG 60.813 55.000 37.81 37.81 46.15 4.41
286 287 1.091197 CATACTGGACGCTGCATGCA 61.091 55.000 21.29 21.29 43.06 3.96
287 288 1.645455 CATACTGGACGCTGCATGC 59.355 57.895 11.82 11.82 38.57 4.06
288 289 0.462581 ACCATACTGGACGCTGCATG 60.463 55.000 0.00 0.00 40.96 4.06
289 290 1.119684 TACCATACTGGACGCTGCAT 58.880 50.000 0.00 0.00 40.96 3.96
290 291 0.899019 TTACCATACTGGACGCTGCA 59.101 50.000 0.00 0.00 40.96 4.41
291 292 1.287425 GTTACCATACTGGACGCTGC 58.713 55.000 0.00 0.00 40.96 5.25
292 293 1.801395 CGGTTACCATACTGGACGCTG 60.801 57.143 1.13 0.00 40.96 5.18
293 294 0.458669 CGGTTACCATACTGGACGCT 59.541 55.000 1.13 0.00 40.96 5.07
294 295 0.529119 CCGGTTACCATACTGGACGC 60.529 60.000 1.13 0.00 45.74 5.19
295 296 1.105457 TCCGGTTACCATACTGGACG 58.895 55.000 0.00 0.00 46.25 4.79
298 299 3.055675 TGTTCTTCCGGTTACCATACTGG 60.056 47.826 0.00 0.00 44.49 4.00
299 300 4.196626 TGTTCTTCCGGTTACCATACTG 57.803 45.455 0.00 0.00 0.00 2.74
300 301 4.572909 GTTGTTCTTCCGGTTACCATACT 58.427 43.478 0.00 0.00 0.00 2.12
301 302 3.368843 CGTTGTTCTTCCGGTTACCATAC 59.631 47.826 0.00 0.00 0.00 2.39
302 303 3.257873 TCGTTGTTCTTCCGGTTACCATA 59.742 43.478 0.00 0.00 0.00 2.74
303 304 2.037511 TCGTTGTTCTTCCGGTTACCAT 59.962 45.455 0.00 0.00 0.00 3.55
304 305 1.411977 TCGTTGTTCTTCCGGTTACCA 59.588 47.619 0.00 0.00 0.00 3.25
305 306 2.153366 TCGTTGTTCTTCCGGTTACC 57.847 50.000 0.00 0.00 0.00 2.85
306 307 3.060070 CAGTTCGTTGTTCTTCCGGTTAC 60.060 47.826 0.00 0.00 0.00 2.50
307 308 3.125316 CAGTTCGTTGTTCTTCCGGTTA 58.875 45.455 0.00 0.00 0.00 2.85
308 309 1.937899 CAGTTCGTTGTTCTTCCGGTT 59.062 47.619 0.00 0.00 0.00 4.44
309 310 1.578583 CAGTTCGTTGTTCTTCCGGT 58.421 50.000 0.00 0.00 0.00 5.28
310 311 0.865769 CCAGTTCGTTGTTCTTCCGG 59.134 55.000 0.00 0.00 0.00 5.14
311 312 0.234884 GCCAGTTCGTTGTTCTTCCG 59.765 55.000 0.00 0.00 0.00 4.30
312 313 0.234884 CGCCAGTTCGTTGTTCTTCC 59.765 55.000 0.00 0.00 0.00 3.46
313 314 0.384353 GCGCCAGTTCGTTGTTCTTC 60.384 55.000 0.00 0.00 0.00 2.87
314 315 1.092921 TGCGCCAGTTCGTTGTTCTT 61.093 50.000 4.18 0.00 0.00 2.52
315 316 0.884704 ATGCGCCAGTTCGTTGTTCT 60.885 50.000 4.18 0.00 0.00 3.01
316 317 0.725784 CATGCGCCAGTTCGTTGTTC 60.726 55.000 4.18 0.00 0.00 3.18
317 318 1.163420 TCATGCGCCAGTTCGTTGTT 61.163 50.000 4.18 0.00 0.00 2.83
318 319 1.163420 TTCATGCGCCAGTTCGTTGT 61.163 50.000 4.18 0.00 0.00 3.32
319 320 0.725784 GTTCATGCGCCAGTTCGTTG 60.726 55.000 4.18 0.00 0.00 4.10
320 321 0.884704 AGTTCATGCGCCAGTTCGTT 60.885 50.000 4.18 0.00 0.00 3.85
321 322 1.301716 AGTTCATGCGCCAGTTCGT 60.302 52.632 4.18 0.00 0.00 3.85
322 323 1.133253 CAGTTCATGCGCCAGTTCG 59.867 57.895 4.18 0.00 0.00 3.95
323 324 1.503542 CCAGTTCATGCGCCAGTTC 59.496 57.895 4.18 0.00 0.00 3.01
324 325 2.629656 GCCAGTTCATGCGCCAGTT 61.630 57.895 4.18 0.00 0.00 3.16
325 326 3.058160 GCCAGTTCATGCGCCAGT 61.058 61.111 4.18 0.00 0.00 4.00
326 327 4.170062 CGCCAGTTCATGCGCCAG 62.170 66.667 4.18 0.00 44.64 4.85
332 333 4.170062 CAGCGCCGCCAGTTCATG 62.170 66.667 4.98 0.00 0.00 3.07
333 334 3.899981 TTCAGCGCCGCCAGTTCAT 62.900 57.895 4.98 0.00 0.00 2.57
334 335 4.617520 TTCAGCGCCGCCAGTTCA 62.618 61.111 4.98 0.00 0.00 3.18
335 336 4.090057 GTTCAGCGCCGCCAGTTC 62.090 66.667 4.98 0.00 0.00 3.01
336 337 4.927782 TGTTCAGCGCCGCCAGTT 62.928 61.111 4.98 0.00 0.00 3.16
341 342 2.907897 ATACTCCTGTTCAGCGCCGC 62.908 60.000 2.29 0.00 0.00 6.53
342 343 1.141881 ATACTCCTGTTCAGCGCCG 59.858 57.895 2.29 0.00 0.00 6.46
343 344 0.811616 CCATACTCCTGTTCAGCGCC 60.812 60.000 2.29 0.00 0.00 6.53
344 345 0.811616 CCCATACTCCTGTTCAGCGC 60.812 60.000 0.00 0.00 0.00 5.92
345 346 0.537188 ACCCATACTCCTGTTCAGCG 59.463 55.000 0.00 0.00 0.00 5.18
346 347 1.555075 TCACCCATACTCCTGTTCAGC 59.445 52.381 0.00 0.00 0.00 4.26
347 348 2.567169 TGTCACCCATACTCCTGTTCAG 59.433 50.000 0.00 0.00 0.00 3.02
348 349 2.615391 TGTCACCCATACTCCTGTTCA 58.385 47.619 0.00 0.00 0.00 3.18
349 350 3.695830 TTGTCACCCATACTCCTGTTC 57.304 47.619 0.00 0.00 0.00 3.18
350 351 3.394606 ACTTTGTCACCCATACTCCTGTT 59.605 43.478 0.00 0.00 0.00 3.16
351 352 2.979678 ACTTTGTCACCCATACTCCTGT 59.020 45.455 0.00 0.00 0.00 4.00
352 353 3.244561 ACACTTTGTCACCCATACTCCTG 60.245 47.826 0.00 0.00 0.00 3.86
353 354 2.979678 ACACTTTGTCACCCATACTCCT 59.020 45.455 0.00 0.00 0.00 3.69
354 355 3.418684 ACACTTTGTCACCCATACTCC 57.581 47.619 0.00 0.00 0.00 3.85
355 356 4.385825 TCAACACTTTGTCACCCATACTC 58.614 43.478 0.00 0.00 34.02 2.59
356 357 4.431416 TCAACACTTTGTCACCCATACT 57.569 40.909 0.00 0.00 34.02 2.12
357 358 5.705609 AATCAACACTTTGTCACCCATAC 57.294 39.130 0.00 0.00 34.02 2.39
358 359 6.539173 AGTAATCAACACTTTGTCACCCATA 58.461 36.000 0.00 0.00 34.02 2.74
359 360 5.385198 AGTAATCAACACTTTGTCACCCAT 58.615 37.500 0.00 0.00 34.02 4.00
360 361 4.787551 AGTAATCAACACTTTGTCACCCA 58.212 39.130 0.00 0.00 34.02 4.51
361 362 7.822822 AGTATAGTAATCAACACTTTGTCACCC 59.177 37.037 0.00 0.00 34.02 4.61
362 363 8.773404 AGTATAGTAATCAACACTTTGTCACC 57.227 34.615 0.00 0.00 34.02 4.02
394 395 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
395 396 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
396 397 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
397 398 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
398 399 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
399 400 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
400 401 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
401 402 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
402 403 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
403 404 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
404 405 6.906901 ACTACTCCCTCTGTCCCAAAATATAA 59.093 38.462 0.00 0.00 0.00 0.98
405 406 6.449956 ACTACTCCCTCTGTCCCAAAATATA 58.550 40.000 0.00 0.00 0.00 0.86
406 407 5.289510 ACTACTCCCTCTGTCCCAAAATAT 58.710 41.667 0.00 0.00 0.00 1.28
407 408 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
408 409 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
409 410 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
410 411 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
411 412 2.715763 AACTACTCCCTCTGTCCCAA 57.284 50.000 0.00 0.00 0.00 4.12
412 413 2.715763 AAACTACTCCCTCTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
413 414 5.425862 AGATAAAAACTACTCCCTCTGTCCC 59.574 44.000 0.00 0.00 0.00 4.46
414 415 6.547930 AGATAAAAACTACTCCCTCTGTCC 57.452 41.667 0.00 0.00 0.00 4.02
415 416 8.296211 AGTAGATAAAAACTACTCCCTCTGTC 57.704 38.462 0.00 0.00 44.58 3.51
425 426 9.924650 TTTGAGGACAGAGTAGATAAAAACTAC 57.075 33.333 0.00 0.00 40.04 2.73
427 428 9.274206 GTTTTGAGGACAGAGTAGATAAAAACT 57.726 33.333 0.00 0.00 33.31 2.66
428 429 9.052759 TGTTTTGAGGACAGAGTAGATAAAAAC 57.947 33.333 0.00 0.00 35.44 2.43
429 430 9.621629 TTGTTTTGAGGACAGAGTAGATAAAAA 57.378 29.630 0.00 0.00 0.00 1.94
430 431 9.621629 TTTGTTTTGAGGACAGAGTAGATAAAA 57.378 29.630 0.00 0.00 0.00 1.52
431 432 9.621629 TTTTGTTTTGAGGACAGAGTAGATAAA 57.378 29.630 0.00 0.00 0.00 1.40
432 433 9.052759 GTTTTGTTTTGAGGACAGAGTAGATAA 57.947 33.333 0.00 0.00 0.00 1.75
433 434 8.208224 TGTTTTGTTTTGAGGACAGAGTAGATA 58.792 33.333 0.00 0.00 0.00 1.98
434 435 7.054124 TGTTTTGTTTTGAGGACAGAGTAGAT 58.946 34.615 0.00 0.00 0.00 1.98
435 436 6.411376 TGTTTTGTTTTGAGGACAGAGTAGA 58.589 36.000 0.00 0.00 0.00 2.59
436 437 6.677781 TGTTTTGTTTTGAGGACAGAGTAG 57.322 37.500 0.00 0.00 0.00 2.57
437 438 7.455641 TTTGTTTTGTTTTGAGGACAGAGTA 57.544 32.000 0.00 0.00 0.00 2.59
438 439 5.975693 TTGTTTTGTTTTGAGGACAGAGT 57.024 34.783 0.00 0.00 0.00 3.24
439 440 7.148590 CCTTTTTGTTTTGTTTTGAGGACAGAG 60.149 37.037 0.00 0.00 0.00 3.35
440 441 6.648725 CCTTTTTGTTTTGTTTTGAGGACAGA 59.351 34.615 0.00 0.00 0.00 3.41
441 442 6.648725 TCCTTTTTGTTTTGTTTTGAGGACAG 59.351 34.615 0.00 0.00 0.00 3.51
442 443 6.525629 TCCTTTTTGTTTTGTTTTGAGGACA 58.474 32.000 0.00 0.00 0.00 4.02
443 444 6.092122 CCTCCTTTTTGTTTTGTTTTGAGGAC 59.908 38.462 0.00 0.00 38.30 3.85
444 445 6.014156 TCCTCCTTTTTGTTTTGTTTTGAGGA 60.014 34.615 0.00 0.00 41.61 3.71
445 446 6.169800 TCCTCCTTTTTGTTTTGTTTTGAGG 58.830 36.000 0.00 0.00 37.57 3.86
446 447 6.183360 GCTCCTCCTTTTTGTTTTGTTTTGAG 60.183 38.462 0.00 0.00 0.00 3.02
447 448 5.641636 GCTCCTCCTTTTTGTTTTGTTTTGA 59.358 36.000 0.00 0.00 0.00 2.69
448 449 5.445806 CGCTCCTCCTTTTTGTTTTGTTTTG 60.446 40.000 0.00 0.00 0.00 2.44
449 450 4.629634 CGCTCCTCCTTTTTGTTTTGTTTT 59.370 37.500 0.00 0.00 0.00 2.43
450 451 4.081917 TCGCTCCTCCTTTTTGTTTTGTTT 60.082 37.500 0.00 0.00 0.00 2.83
451 452 3.445805 TCGCTCCTCCTTTTTGTTTTGTT 59.554 39.130 0.00 0.00 0.00 2.83
452 453 3.020984 TCGCTCCTCCTTTTTGTTTTGT 58.979 40.909 0.00 0.00 0.00 2.83
453 454 3.632189 CTCGCTCCTCCTTTTTGTTTTG 58.368 45.455 0.00 0.00 0.00 2.44
454 455 2.034685 GCTCGCTCCTCCTTTTTGTTTT 59.965 45.455 0.00 0.00 0.00 2.43
455 456 1.609072 GCTCGCTCCTCCTTTTTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
456 457 1.239347 GCTCGCTCCTCCTTTTTGTT 58.761 50.000 0.00 0.00 0.00 2.83
457 458 0.108585 TGCTCGCTCCTCCTTTTTGT 59.891 50.000 0.00 0.00 0.00 2.83
458 459 0.519077 GTGCTCGCTCCTCCTTTTTG 59.481 55.000 0.00 0.00 0.00 2.44
459 460 0.398318 AGTGCTCGCTCCTCCTTTTT 59.602 50.000 0.00 0.00 0.00 1.94
460 461 0.036858 GAGTGCTCGCTCCTCCTTTT 60.037 55.000 0.00 0.00 0.00 2.27
461 462 1.594310 GAGTGCTCGCTCCTCCTTT 59.406 57.895 0.00 0.00 0.00 3.11
462 463 2.705821 CGAGTGCTCGCTCCTCCTT 61.706 63.158 8.71 0.00 46.50 3.36
463 464 3.137459 CGAGTGCTCGCTCCTCCT 61.137 66.667 8.71 0.00 46.50 3.69
475 476 4.803426 GAGGCTCACCGGCGAGTG 62.803 72.222 20.22 15.28 44.22 3.51
477 478 3.708220 GAAGAGGCTCACCGGCGAG 62.708 68.421 18.26 15.36 44.22 5.03
478 479 3.760035 GAAGAGGCTCACCGGCGA 61.760 66.667 18.26 0.00 44.22 5.54
479 480 3.302347 AAGAAGAGGCTCACCGGCG 62.302 63.158 18.26 0.00 44.22 6.46
480 481 1.743252 CAAGAAGAGGCTCACCGGC 60.743 63.158 18.26 0.73 42.76 6.13
481 482 0.390472 GACAAGAAGAGGCTCACCGG 60.390 60.000 18.26 0.00 42.76 5.28
482 483 0.605589 AGACAAGAAGAGGCTCACCG 59.394 55.000 18.26 7.15 42.76 4.94
483 484 1.620819 TCAGACAAGAAGAGGCTCACC 59.379 52.381 18.26 7.66 0.00 4.02
484 485 3.520569 GATCAGACAAGAAGAGGCTCAC 58.479 50.000 18.26 10.31 0.00 3.51
485 486 2.499289 GGATCAGACAAGAAGAGGCTCA 59.501 50.000 18.26 0.00 0.00 4.26
486 487 2.481104 CGGATCAGACAAGAAGAGGCTC 60.481 54.545 6.34 6.34 0.00 4.70
487 488 1.480137 CGGATCAGACAAGAAGAGGCT 59.520 52.381 0.00 0.00 0.00 4.58
488 489 1.933247 CGGATCAGACAAGAAGAGGC 58.067 55.000 0.00 0.00 0.00 4.70
489 490 1.800655 CGCGGATCAGACAAGAAGAGG 60.801 57.143 0.00 0.00 0.00 3.69
490 491 1.554392 CGCGGATCAGACAAGAAGAG 58.446 55.000 0.00 0.00 0.00 2.85
491 492 0.173481 CCGCGGATCAGACAAGAAGA 59.827 55.000 24.07 0.00 0.00 2.87
526 527 4.373116 GTGACCGGCCGAAGCAGA 62.373 66.667 30.73 0.21 42.56 4.26
670 722 2.283101 GGGGCATGGTGAGCAACA 60.283 61.111 0.00 0.00 0.00 3.33
671 723 2.036256 AGGGGCATGGTGAGCAAC 59.964 61.111 0.00 0.00 0.00 4.17
672 724 2.036098 CAGGGGCATGGTGAGCAA 59.964 61.111 0.00 0.00 0.00 3.91
673 725 4.051167 CCAGGGGCATGGTGAGCA 62.051 66.667 0.00 0.00 35.47 4.26
679 731 4.802051 CCGTCACCAGGGGCATGG 62.802 72.222 6.45 6.45 46.47 3.66
680 732 3.976701 GACCGTCACCAGGGGCATG 62.977 68.421 0.00 0.00 35.37 4.06
681 733 3.717294 GACCGTCACCAGGGGCAT 61.717 66.667 0.00 0.00 35.37 4.40
746 804 2.158957 AGAGTGGTTTTTCAGCTCGTGA 60.159 45.455 0.00 0.00 0.00 4.35
748 806 2.158957 TGAGAGTGGTTTTTCAGCTCGT 60.159 45.455 0.00 0.00 0.00 4.18
749 807 2.483876 TGAGAGTGGTTTTTCAGCTCG 58.516 47.619 0.00 0.00 0.00 5.03
784 842 1.198408 TCAGCCAAGAGTACGTACGTG 59.802 52.381 30.25 17.35 0.00 4.49
785 843 1.527034 TCAGCCAAGAGTACGTACGT 58.473 50.000 25.98 25.98 0.00 3.57
786 844 2.846039 ATCAGCCAAGAGTACGTACG 57.154 50.000 19.49 15.01 0.00 3.67
787 845 3.445857 GGAATCAGCCAAGAGTACGTAC 58.554 50.000 18.10 18.10 0.00 3.67
800 859 2.287849 TGATCGATCTCACGGAATCAGC 60.288 50.000 25.02 0.00 0.00 4.26
827 886 0.675837 TCGGATCTCTTGTCGGACGT 60.676 55.000 3.34 0.00 0.00 4.34
898 957 2.167900 GTGCTCCCGTATGTAAAGGTCT 59.832 50.000 0.00 0.00 0.00 3.85
900 959 1.208776 GGTGCTCCCGTATGTAAAGGT 59.791 52.381 0.00 0.00 0.00 3.50
930 990 3.356529 AGCTTGGATCGATTTGGTTCT 57.643 42.857 0.00 0.00 0.00 3.01
982 1042 2.586357 GGTTCCTGCTCGATCGCC 60.586 66.667 11.09 4.37 0.00 5.54
985 1045 1.162800 GCCATGGTTCCTGCTCGATC 61.163 60.000 14.67 0.00 0.00 3.69
986 1046 1.153086 GCCATGGTTCCTGCTCGAT 60.153 57.895 14.67 0.00 0.00 3.59
987 1047 1.841302 AAGCCATGGTTCCTGCTCGA 61.841 55.000 14.67 0.00 32.62 4.04
988 1048 1.372087 GAAGCCATGGTTCCTGCTCG 61.372 60.000 14.67 0.00 34.45 5.03
989 1049 1.372087 CGAAGCCATGGTTCCTGCTC 61.372 60.000 14.67 0.00 36.81 4.26
1048 1117 0.537143 TTGTTGCTCTTGTCGCCCAT 60.537 50.000 0.00 0.00 0.00 4.00
1262 1331 2.164673 CGTTGTTGTCGTCGTCGC 59.835 61.111 0.00 0.00 36.96 5.19
1574 1715 9.436957 AGCCTAATCATCCGTTACTAATTTATG 57.563 33.333 0.00 0.00 0.00 1.90
1587 1728 3.199880 AGAAACCAGCCTAATCATCCG 57.800 47.619 0.00 0.00 0.00 4.18
1606 1747 2.096417 CGCTCCAAACGACCAAGTAAAG 60.096 50.000 0.00 0.00 0.00 1.85
1617 1758 0.656205 CGTTTTCACCGCTCCAAACG 60.656 55.000 2.04 2.04 43.74 3.60
1635 1776 7.165427 TCATTAGATTCGTCATGACAAATCG 57.835 36.000 26.14 16.04 39.16 3.34
1679 4749 5.462530 TTCCGCCTCGAAATATCTCATAA 57.537 39.130 0.00 0.00 0.00 1.90
1691 4761 3.064820 GCAAAGAATTAATTCCGCCTCGA 59.935 43.478 21.86 0.00 37.51 4.04
1692 4762 3.363178 GCAAAGAATTAATTCCGCCTCG 58.637 45.455 21.86 8.40 37.51 4.63
1693 4763 3.381590 AGGCAAAGAATTAATTCCGCCTC 59.618 43.478 31.55 18.49 46.10 4.70
1707 4777 8.257306 ACTGAAACAAATAAAGAAAGGCAAAGA 58.743 29.630 0.00 0.00 0.00 2.52
1711 4781 8.470805 TGTTACTGAAACAAATAAAGAAAGGCA 58.529 29.630 0.00 0.00 45.11 4.75
1712 4782 8.865590 TGTTACTGAAACAAATAAAGAAAGGC 57.134 30.769 0.00 0.00 45.11 4.35
1738 4808 6.855763 TGCTTCAAACAAAGATGGGATATT 57.144 33.333 0.00 0.00 0.00 1.28
1739 4809 6.855763 TTGCTTCAAACAAAGATGGGATAT 57.144 33.333 0.00 0.00 0.00 1.63
1740 4810 6.662865 TTTGCTTCAAACAAAGATGGGATA 57.337 33.333 0.00 0.00 33.30 2.59
1741 4811 5.549742 TTTGCTTCAAACAAAGATGGGAT 57.450 34.783 0.00 0.00 33.30 3.85
1742 4812 5.540911 GATTTGCTTCAAACAAAGATGGGA 58.459 37.500 0.00 0.00 40.14 4.37
1745 4815 5.897133 CACGATTTGCTTCAAACAAAGATG 58.103 37.500 0.00 0.00 40.14 2.90
1769 4839 5.086058 CGGAGTGAAATGATTTGTTAACGG 58.914 41.667 0.00 0.00 0.00 4.44
1770 4840 5.685841 ACGGAGTGAAATGATTTGTTAACG 58.314 37.500 0.00 0.00 42.51 3.18
1776 4846 6.527722 CCAATTGTACGGAGTGAAATGATTTG 59.472 38.462 4.43 0.00 45.73 2.32
1786 4856 0.719465 GTCGCCAATTGTACGGAGTG 59.281 55.000 15.52 2.13 45.73 3.51
1788 4858 1.434555 TTGTCGCCAATTGTACGGAG 58.565 50.000 15.52 0.00 0.00 4.63
1789 4859 1.532007 GTTTGTCGCCAATTGTACGGA 59.468 47.619 15.52 3.46 0.00 4.69
1790 4860 1.264557 TGTTTGTCGCCAATTGTACGG 59.735 47.619 15.52 0.00 0.00 4.02
1792 4862 5.343860 GGTATTTGTTTGTCGCCAATTGTAC 59.656 40.000 4.43 0.55 0.00 2.90
1793 4863 5.241949 AGGTATTTGTTTGTCGCCAATTGTA 59.758 36.000 4.43 0.00 0.00 2.41
1794 4864 4.038642 AGGTATTTGTTTGTCGCCAATTGT 59.961 37.500 4.43 0.00 0.00 2.71
1795 4865 4.555262 AGGTATTTGTTTGTCGCCAATTG 58.445 39.130 0.00 0.00 0.00 2.32
1796 4866 4.864704 AGGTATTTGTTTGTCGCCAATT 57.135 36.364 0.00 0.00 0.00 2.32
1798 4868 4.822896 AGTTAGGTATTTGTTTGTCGCCAA 59.177 37.500 0.00 0.00 0.00 4.52
1802 4902 9.702726 CATATTGAGTTAGGTATTTGTTTGTCG 57.297 33.333 0.00 0.00 0.00 4.35
1815 4915 3.309682 CGGCACACACATATTGAGTTAGG 59.690 47.826 0.00 0.00 0.00 2.69
1819 4919 1.086696 GCGGCACACACATATTGAGT 58.913 50.000 0.00 0.00 0.00 3.41
1834 4934 1.724582 AACAAAGGTGTGTGAGCGGC 61.725 55.000 0.00 0.00 38.27 6.53
1835 4935 1.588674 TAACAAAGGTGTGTGAGCGG 58.411 50.000 0.00 0.00 38.27 5.52
1837 4937 3.129638 TGGTTTAACAAAGGTGTGTGAGC 59.870 43.478 0.00 0.00 38.27 4.26
1838 4938 4.974368 TGGTTTAACAAAGGTGTGTGAG 57.026 40.909 0.00 0.00 38.27 3.51
1895 5026 3.016736 CCACACCCACTCATATTGGTTC 58.983 50.000 0.00 0.00 31.46 3.62
1905 5038 2.113139 CCACCACCACACCCACTC 59.887 66.667 0.00 0.00 0.00 3.51
1916 5049 3.518634 AATGAAACAACACACCACCAC 57.481 42.857 0.00 0.00 0.00 4.16
1942 5075 1.189524 TGACCCTACCGTCAACCTGG 61.190 60.000 0.00 0.00 39.78 4.45
1943 5076 0.246635 CTGACCCTACCGTCAACCTG 59.753 60.000 0.00 0.00 42.06 4.00
1954 5087 0.892755 CTACACCAACGCTGACCCTA 59.107 55.000 0.00 0.00 0.00 3.53
1993 5126 9.611284 GAAGTTTTGCTTTTCATTTTTGAACTT 57.389 25.926 0.00 0.00 37.59 2.66
1994 5127 9.002600 AGAAGTTTTGCTTTTCATTTTTGAACT 57.997 25.926 0.00 0.00 37.59 3.01
1995 5128 9.611284 AAGAAGTTTTGCTTTTCATTTTTGAAC 57.389 25.926 0.00 0.00 37.59 3.18
2000 5133 9.440773 AGAAGAAGAAGTTTTGCTTTTCATTTT 57.559 25.926 0.00 0.00 37.59 1.82
2001 5134 9.440773 AAGAAGAAGAAGTTTTGCTTTTCATTT 57.559 25.926 0.00 0.00 37.59 2.32
2002 5135 9.091784 GAAGAAGAAGAAGTTTTGCTTTTCATT 57.908 29.630 0.00 0.00 37.59 2.57
2003 5136 8.473219 AGAAGAAGAAGAAGTTTTGCTTTTCAT 58.527 29.630 9.60 0.00 37.59 2.57
2004 5137 7.830739 AGAAGAAGAAGAAGTTTTGCTTTTCA 58.169 30.769 9.60 0.00 37.59 2.69
2005 5138 8.694975 AAGAAGAAGAAGAAGTTTTGCTTTTC 57.305 30.769 0.00 0.00 37.59 2.29
2006 5139 9.494271 AAAAGAAGAAGAAGAAGTTTTGCTTTT 57.506 25.926 0.00 0.00 37.59 2.27
2007 5140 9.494271 AAAAAGAAGAAGAAGAAGTTTTGCTTT 57.506 25.926 0.00 0.00 37.59 3.51
2017 5150 9.788960 GCTTCAACTTAAAAAGAAGAAGAAGAA 57.211 29.630 19.78 0.00 41.18 2.52
2018 5151 8.122952 CGCTTCAACTTAAAAAGAAGAAGAAGA 58.877 33.333 19.78 0.00 41.18 2.87
2019 5152 8.122952 TCGCTTCAACTTAAAAAGAAGAAGAAG 58.877 33.333 19.78 14.26 41.18 2.85
2020 5153 7.981142 TCGCTTCAACTTAAAAAGAAGAAGAA 58.019 30.769 19.78 10.52 41.18 2.52
2021 5154 7.548196 TCGCTTCAACTTAAAAAGAAGAAGA 57.452 32.000 19.78 8.61 41.18 2.87
2022 5155 8.524267 GTTTCGCTTCAACTTAAAAAGAAGAAG 58.476 33.333 12.19 15.13 39.78 2.85
2023 5156 8.241367 AGTTTCGCTTCAACTTAAAAAGAAGAA 58.759 29.630 12.19 5.10 39.78 2.52
2024 5157 7.758495 AGTTTCGCTTCAACTTAAAAAGAAGA 58.242 30.769 12.19 0.72 39.78 2.87
2025 5158 7.971004 AGTTTCGCTTCAACTTAAAAAGAAG 57.029 32.000 0.00 0.00 40.23 2.85
2026 5159 9.843334 TTAAGTTTCGCTTCAACTTAAAAAGAA 57.157 25.926 16.37 2.55 46.47 2.52
2032 5165 9.263538 TGTATCTTAAGTTTCGCTTCAACTTAA 57.736 29.630 17.14 17.14 46.92 1.85
2096 5229 8.491045 AAAAATCAAGTAGAGGATGGGAAAAA 57.509 30.769 0.00 0.00 0.00 1.94
2159 5295 7.041644 ACTCATGCAATCCAAATTTTGAAACAG 60.042 33.333 10.72 0.00 0.00 3.16
2182 5320 4.019231 AGTGGATTTTCAGAACCCCTACTC 60.019 45.833 0.00 0.00 0.00 2.59
2183 5321 3.916989 AGTGGATTTTCAGAACCCCTACT 59.083 43.478 0.00 0.00 0.00 2.57
2188 5326 5.745227 TCATAGAGTGGATTTTCAGAACCC 58.255 41.667 0.00 0.00 0.00 4.11
2267 5405 4.991472 TGCATTGCAGAAAATTATACGCA 58.009 34.783 7.38 0.00 33.32 5.24
2314 5452 1.074727 TCTCCCCTTGGCGATTTTTCA 59.925 47.619 0.00 0.00 0.00 2.69
2315 5453 1.745653 CTCTCCCCTTGGCGATTTTTC 59.254 52.381 0.00 0.00 0.00 2.29
2317 5455 0.034089 CCTCTCCCCTTGGCGATTTT 60.034 55.000 0.00 0.00 0.00 1.82
2320 5458 1.074167 ATCCTCTCCCCTTGGCGAT 60.074 57.895 0.00 0.00 0.00 4.58
2321 5459 1.762460 GATCCTCTCCCCTTGGCGA 60.762 63.158 0.00 0.00 0.00 5.54
2322 5460 2.812619 GGATCCTCTCCCCTTGGCG 61.813 68.421 3.84 0.00 38.19 5.69
2323 5461 3.245650 GGATCCTCTCCCCTTGGC 58.754 66.667 3.84 0.00 38.19 4.52
2344 5482 4.910195 ACACCTTGAGTAATGCATTCAGA 58.090 39.130 16.86 0.00 0.00 3.27
2354 5492 1.069513 CCACGGTGACACCTTGAGTAA 59.930 52.381 27.90 0.00 39.65 2.24
2356 5494 1.445942 CCACGGTGACACCTTGAGT 59.554 57.895 27.90 13.84 39.65 3.41
2366 5504 2.264005 ATAACAACTTGCCACGGTGA 57.736 45.000 10.28 0.00 0.00 4.02
2369 5507 3.857052 TCTCTATAACAACTTGCCACGG 58.143 45.455 0.00 0.00 0.00 4.94
2422 5560 1.615392 GAAGGCTGCCATTGTGTCTTT 59.385 47.619 22.65 2.23 0.00 2.52
2468 5611 9.683069 AAACATTGTAGCAGATTTTACTCTTTG 57.317 29.630 0.00 0.00 0.00 2.77
2476 5619 7.013655 ACTGTCAGAAACATTGTAGCAGATTTT 59.986 33.333 6.91 0.00 37.23 1.82
2504 5647 1.540118 GATCTCCATCCCCCTCCCC 60.540 68.421 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.