Multiple sequence alignment - TraesCS5D01G172700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G172700 chr5D 100.000 4413 0 0 1 4413 269742325 269737913 0.000000e+00 8150.0
1 TraesCS5D01G172700 chr5D 100.000 3032 0 0 4739 7770 269737587 269734556 0.000000e+00 5600.0
2 TraesCS5D01G172700 chr5A 95.757 3582 69 23 88 3618 358492178 358488629 0.000000e+00 5696.0
3 TraesCS5D01G172700 chr5A 96.738 1717 47 7 5466 7173 358486709 358484993 0.000000e+00 2852.0
4 TraesCS5D01G172700 chr5A 93.243 814 16 7 4739 5534 358487545 358486753 0.000000e+00 1162.0
5 TraesCS5D01G172700 chr5A 90.414 532 27 1 1507 2038 487696834 487696327 0.000000e+00 678.0
6 TraesCS5D01G172700 chr5A 94.359 390 20 2 3618 4005 358488602 358488213 1.440000e-166 597.0
7 TraesCS5D01G172700 chr5A 95.971 273 9 2 4143 4413 358487935 358487663 7.160000e-120 442.0
8 TraesCS5D01G172700 chr5A 98.690 229 3 0 4023 4251 358488156 358487928 2.610000e-109 407.0
9 TraesCS5D01G172700 chr5A 86.538 156 15 2 5719 5868 86662020 86662175 4.820000e-37 167.0
10 TraesCS5D01G172700 chr5A 97.101 69 2 0 5466 5534 358486765 358486697 4.930000e-22 117.0
11 TraesCS5D01G172700 chr5B 96.216 3277 66 16 363 3618 305597664 305594425 0.000000e+00 5312.0
12 TraesCS5D01G172700 chr5B 96.319 2445 79 9 4739 7173 305593432 305590989 0.000000e+00 4006.0
13 TraesCS5D01G172700 chr5B 97.410 502 10 3 3909 4408 305594323 305593823 0.000000e+00 852.0
14 TraesCS5D01G172700 chr5B 95.666 323 11 3 52 373 305598136 305597816 4.160000e-142 516.0
15 TraesCS5D01G172700 chr5B 86.538 156 15 2 5719 5868 98663179 98663334 4.820000e-37 167.0
16 TraesCS5D01G172700 chr5B 93.506 77 4 1 3624 3699 305594392 305594316 6.370000e-21 113.0
17 TraesCS5D01G172700 chr3D 93.902 574 28 4 7194 7760 309673151 309673724 0.000000e+00 859.0
18 TraesCS5D01G172700 chr6A 82.909 550 60 17 7194 7735 117425569 117426092 1.530000e-126 464.0
19 TraesCS5D01G172700 chr1D 79.814 322 42 14 1896 2197 415460477 415460159 6.110000e-51 213.0
20 TraesCS5D01G172700 chr1A 79.692 325 41 15 1896 2197 513263816 513263494 2.200000e-50 211.0
21 TraesCS5D01G172700 chr7A 84.186 215 25 5 7194 7401 141059555 141059767 4.750000e-47 200.0
22 TraesCS5D01G172700 chr7A 84.186 215 25 5 7194 7401 141313723 141313935 4.750000e-47 200.0
23 TraesCS5D01G172700 chr7A 84.186 215 25 5 7194 7401 141654085 141654297 4.750000e-47 200.0
24 TraesCS5D01G172700 chr7A 83.721 215 26 5 7194 7401 140770109 140770321 2.210000e-45 195.0
25 TraesCS5D01G172700 chr7A 90.299 134 12 1 5738 5870 201987027 201987160 2.880000e-39 174.0
26 TraesCS5D01G172700 chr7A 85.802 162 16 3 5719 5874 462978738 462978578 1.730000e-36 165.0
27 TraesCS5D01G172700 chr4A 84.112 214 26 4 7194 7401 588661252 588661463 4.750000e-47 200.0
28 TraesCS5D01G172700 chr7B 88.535 157 13 2 5719 5870 155471168 155471324 1.330000e-42 185.0
29 TraesCS5D01G172700 chr2B 87.500 152 16 1 5719 5870 399941841 399941989 1.040000e-38 172.0
30 TraesCS5D01G172700 chr2B 96.970 33 1 0 1599 1631 71443699 71443731 1.000000e-03 56.5
31 TraesCS5D01G172700 chr2B 96.970 33 1 0 1599 1631 71577644 71577676 1.000000e-03 56.5
32 TraesCS5D01G172700 chr2D 86.709 158 15 2 5716 5867 122864266 122864109 3.730000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G172700 chr5D 269734556 269742325 7769 True 6875.000000 8150 100.000000 1 7770 2 chr5D.!!$R1 7769
1 TraesCS5D01G172700 chr5A 358484993 358492178 7185 True 1610.428571 5696 95.979857 88 7173 7 chr5A.!!$R2 7085
2 TraesCS5D01G172700 chr5A 487696327 487696834 507 True 678.000000 678 90.414000 1507 2038 1 chr5A.!!$R1 531
3 TraesCS5D01G172700 chr5B 305590989 305598136 7147 True 2159.800000 5312 95.823400 52 7173 5 chr5B.!!$R1 7121
4 TraesCS5D01G172700 chr3D 309673151 309673724 573 False 859.000000 859 93.902000 7194 7760 1 chr3D.!!$F1 566
5 TraesCS5D01G172700 chr6A 117425569 117426092 523 False 464.000000 464 82.909000 7194 7735 1 chr6A.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.315886 ACGATTGTGCACTCGTACCA 59.684 50.000 26.77 0.0 43.33 3.25 F
47 48 0.317160 TGTGCACTCGTACCAGGAAG 59.683 55.000 19.41 0.0 0.00 3.46 F
48 49 0.317479 GTGCACTCGTACCAGGAAGT 59.683 55.000 10.32 0.0 0.00 3.01 F
49 50 1.045407 TGCACTCGTACCAGGAAGTT 58.955 50.000 0.00 0.0 0.00 2.66 F
50 51 1.270094 TGCACTCGTACCAGGAAGTTG 60.270 52.381 0.00 0.0 0.00 3.16 F
295 296 1.619807 ATTGCAGCCTTGGGAATGCC 61.620 55.000 10.25 0.0 36.52 4.40 F
3355 3596 2.248835 GCCGTGTGTTAAGGTGCGT 61.249 57.895 0.00 0.0 0.00 5.24 F
5438 5932 1.119684 ACCAAACAGCCCCTTTGTTC 58.880 50.000 0.00 0.0 37.77 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2003 5.104735 GGAAAAGACCACAGGATGATACTCT 60.105 44.000 0.00 0.0 39.69 3.24 R
2679 2897 6.403092 CCAATAACAGCGTGTAATCAATGTCA 60.403 38.462 0.00 0.0 0.00 3.58 R
3061 3279 2.832129 CACTAACCTTGTAGGCTCAGGA 59.168 50.000 12.94 0.0 39.63 3.86 R
3211 3452 0.182061 CATATGCAGGCACCAGGTCT 59.818 55.000 0.00 0.0 0.00 3.85 R
3355 3596 0.766131 TTTTCAGTAACTGCCCCGGA 59.234 50.000 0.73 0.0 0.00 5.14 R
3401 3642 7.121168 TGAAATTGGCAAGAGTTAGTCTATTGG 59.879 37.037 5.96 0.0 43.22 3.16 R
6093 6700 0.251341 ACCCCACAACAAGATGCCTC 60.251 55.000 0.00 0.0 0.00 4.70 R
7422 8056 1.394618 TCAAACCAAACCAGTTCCGG 58.605 50.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.820226 TCGCTTGGTCTCTCAGATGG 59.180 55.000 0.00 0.00 0.00 3.51
20 21 0.534412 CGCTTGGTCTCTCAGATGGT 59.466 55.000 0.00 0.00 0.00 3.55
21 22 1.738365 CGCTTGGTCTCTCAGATGGTG 60.738 57.143 0.00 0.00 0.00 4.17
22 23 2.011046 GCTTGGTCTCTCAGATGGTGC 61.011 57.143 0.00 0.00 0.00 5.01
23 24 1.277273 CTTGGTCTCTCAGATGGTGCA 59.723 52.381 0.00 0.00 0.00 4.57
24 25 0.610174 TGGTCTCTCAGATGGTGCAC 59.390 55.000 8.80 8.80 0.00 4.57
25 26 0.459237 GGTCTCTCAGATGGTGCACG 60.459 60.000 11.45 0.00 0.00 5.34
26 27 0.528017 GTCTCTCAGATGGTGCACGA 59.472 55.000 11.45 7.55 0.00 4.35
27 28 1.135915 GTCTCTCAGATGGTGCACGAT 59.864 52.381 14.74 14.74 0.00 3.73
28 29 1.827344 TCTCTCAGATGGTGCACGATT 59.173 47.619 15.94 3.54 0.00 3.34
29 30 1.931841 CTCTCAGATGGTGCACGATTG 59.068 52.381 15.94 14.59 0.00 2.67
30 31 1.276138 TCTCAGATGGTGCACGATTGT 59.724 47.619 15.94 3.93 0.00 2.71
41 42 0.713883 CACGATTGTGCACTCGTACC 59.286 55.000 27.22 7.71 43.31 3.34
42 43 0.315886 ACGATTGTGCACTCGTACCA 59.684 50.000 26.77 0.00 43.33 3.25
43 44 0.992072 CGATTGTGCACTCGTACCAG 59.008 55.000 19.41 0.00 0.00 4.00
44 45 1.359848 GATTGTGCACTCGTACCAGG 58.640 55.000 19.41 0.00 0.00 4.45
45 46 0.973632 ATTGTGCACTCGTACCAGGA 59.026 50.000 19.41 0.00 0.00 3.86
46 47 0.753867 TTGTGCACTCGTACCAGGAA 59.246 50.000 19.41 0.00 0.00 3.36
47 48 0.317160 TGTGCACTCGTACCAGGAAG 59.683 55.000 19.41 0.00 0.00 3.46
48 49 0.317479 GTGCACTCGTACCAGGAAGT 59.683 55.000 10.32 0.00 0.00 3.01
49 50 1.045407 TGCACTCGTACCAGGAAGTT 58.955 50.000 0.00 0.00 0.00 2.66
50 51 1.270094 TGCACTCGTACCAGGAAGTTG 60.270 52.381 0.00 0.00 0.00 3.16
183 184 9.751542 GTACCGGATATTATGGAGATTTCTATG 57.248 37.037 9.46 0.00 0.00 2.23
295 296 1.619807 ATTGCAGCCTTGGGAATGCC 61.620 55.000 10.25 0.00 36.52 4.40
338 339 3.758554 CCCCTGAAACCATTTGTAGACAG 59.241 47.826 0.00 0.00 0.00 3.51
486 671 3.987868 TGTGCTGTACGAGACTTTGATTC 59.012 43.478 0.00 0.00 0.00 2.52
514 699 3.542648 CTTCAGTGATCATGTCCAGCAT 58.457 45.455 0.00 0.00 38.60 3.79
733 921 4.932799 TGTGAAACCAATGGTCGTATGTAG 59.067 41.667 4.95 0.00 33.12 2.74
736 924 2.901249 ACCAATGGTCGTATGTAGTGC 58.099 47.619 0.00 0.00 0.00 4.40
755 943 4.002982 GTGCAGTTGTATGGATGTCTTGA 58.997 43.478 0.00 0.00 0.00 3.02
837 1026 4.080072 GGGAGGAGATTTGGTTGATCTCTT 60.080 45.833 12.32 6.32 45.62 2.85
1475 1664 9.392506 TCCTTGACCTCATCATTATATTCCTTA 57.607 33.333 0.00 0.00 37.11 2.69
1550 1739 3.853671 CGTTTGCATTGTATTCTTCTGCC 59.146 43.478 0.00 0.00 31.89 4.85
1614 1803 8.709386 ACTGCTGTACTCTGTAAAGAAATATG 57.291 34.615 0.00 0.00 0.00 1.78
1632 1847 9.319143 AGAAATATGAGACTTTTTAGATCACGG 57.681 33.333 0.00 0.00 0.00 4.94
1633 1848 9.314321 GAAATATGAGACTTTTTAGATCACGGA 57.686 33.333 0.00 0.00 0.00 4.69
1634 1849 9.667107 AAATATGAGACTTTTTAGATCACGGAA 57.333 29.630 0.00 0.00 0.00 4.30
1635 1850 8.879342 ATATGAGACTTTTTAGATCACGGAAG 57.121 34.615 0.00 0.00 0.00 3.46
1636 1851 6.340962 TGAGACTTTTTAGATCACGGAAGA 57.659 37.500 0.00 0.00 0.00 2.87
1637 1852 6.390721 TGAGACTTTTTAGATCACGGAAGAG 58.609 40.000 0.00 0.00 0.00 2.85
1638 1853 6.015350 TGAGACTTTTTAGATCACGGAAGAGT 60.015 38.462 0.00 0.00 0.00 3.24
1639 1854 6.159988 AGACTTTTTAGATCACGGAAGAGTG 58.840 40.000 0.00 0.00 43.11 3.51
1650 1865 6.097915 TCACGGAAGAGTGATCTAAAAAGT 57.902 37.500 0.00 0.00 45.18 2.66
1651 1866 6.157211 TCACGGAAGAGTGATCTAAAAAGTC 58.843 40.000 0.00 0.00 45.18 3.01
1652 1867 6.015350 TCACGGAAGAGTGATCTAAAAAGTCT 60.015 38.462 0.00 0.00 45.18 3.24
1653 1868 6.647067 CACGGAAGAGTGATCTAAAAAGTCTT 59.353 38.462 0.00 0.00 44.43 3.01
1654 1869 7.813148 CACGGAAGAGTGATCTAAAAAGTCTTA 59.187 37.037 0.00 0.00 44.43 2.10
1655 1870 7.813627 ACGGAAGAGTGATCTAAAAAGTCTTAC 59.186 37.037 0.00 0.00 34.50 2.34
1788 2003 2.289444 GCTGGTGAGTGGTTTACAGCTA 60.289 50.000 7.17 0.00 45.63 3.32
2023 2238 7.493971 CCAAGATGGTACTTTCTTCTACATCTG 59.506 40.741 0.00 0.00 41.72 2.90
2291 2506 7.925483 AGCTTTGTTGCAGTTAATTTGACATAA 59.075 29.630 0.00 0.00 34.99 1.90
2351 2566 3.493699 GGTGGTAGCGCATGTTCCTAATA 60.494 47.826 11.47 0.00 0.00 0.98
2449 2664 6.567132 CGGTTAGGTTCCTTGTGATTTGTTAC 60.567 42.308 0.00 0.00 0.00 2.50
2552 2770 9.727627 GCTCCAAGATATCAAAATAAACTCTTG 57.272 33.333 5.32 0.00 34.56 3.02
2679 2897 3.067180 TGGTAAACGAGTCGAGAGTTTGT 59.933 43.478 21.50 0.00 38.38 2.83
3355 3596 2.248835 GCCGTGTGTTAAGGTGCGT 61.249 57.895 0.00 0.00 0.00 5.24
3401 3642 4.621068 TGTATTCTGCTGCTGTTATTGC 57.379 40.909 0.00 0.00 0.00 3.56
3591 3833 9.539825 AAACATGTTTACAGACAAATTAATGCA 57.460 25.926 22.10 0.00 32.47 3.96
3706 3978 7.574481 CGTTTATACTGAAATTTTAGCGAGACG 59.426 37.037 9.73 9.89 0.00 4.18
3733 4005 5.276067 GCGCATAATCACTTCTTTGAATTGC 60.276 40.000 0.30 0.00 0.00 3.56
3741 4013 7.750229 TCACTTCTTTGAATTGCTGTTATCT 57.250 32.000 0.00 0.00 0.00 1.98
3760 4032 3.264947 TCTTGGATTTCTCAGCATGTCG 58.735 45.455 0.00 0.00 37.40 4.35
3807 4080 3.153369 TGTGTTCCATATGCACTGGTT 57.847 42.857 14.99 0.00 35.19 3.67
3856 4129 1.742831 TGACGGTATTTTGCATCCAGC 59.257 47.619 0.00 0.00 45.96 4.85
3881 4154 8.303876 GCATCCAAAGACTTGTCCTTTATTTAA 58.696 33.333 0.00 0.00 33.03 1.52
3946 4219 9.379791 TCCGTATATCTGTGTGATACTACTATG 57.620 37.037 0.00 0.00 40.12 2.23
3999 4272 8.898792 CATGCAATTACTATCAACAATTCATCG 58.101 33.333 0.00 0.00 0.00 3.84
4002 4275 8.122330 GCAATTACTATCAACAATTCATCGTCA 58.878 33.333 0.00 0.00 0.00 4.35
4017 4290 4.872124 TCATCGTCATTGGAAACTGATCAG 59.128 41.667 21.37 21.37 0.00 2.90
4387 4802 1.302511 ACCATGGGTCGCAACACTC 60.303 57.895 18.09 0.00 0.00 3.51
4410 4825 6.817184 TCTGCACTTCCCAGTATAATAAGTC 58.183 40.000 0.00 0.00 0.00 3.01
4843 5319 7.095355 CCATATTTTACCTGTATTACGGTGAGC 60.095 40.741 15.88 0.00 34.76 4.26
5068 5544 1.972660 ATAGGCACTGGAGGGTTCGC 61.973 60.000 0.00 0.00 41.52 4.70
5359 5853 5.710613 AAATTGTGCCAACTAACAAAACG 57.289 34.783 0.00 0.00 39.57 3.60
5438 5932 1.119684 ACCAAACAGCCCCTTTGTTC 58.880 50.000 0.00 0.00 37.77 3.18
5443 5937 3.322191 AACAGCCCCTTTGTTCCTTTA 57.678 42.857 0.00 0.00 33.72 1.85
5562 6169 6.095440 AGGAGCACATGTGATATTTAACAACC 59.905 38.462 29.80 16.24 0.00 3.77
5578 6185 9.612066 ATTTAACAACCTTCACATGTGATTTTT 57.388 25.926 28.32 19.62 39.64 1.94
5601 6208 5.424757 TCCCTCATTTACCAGTAATTGACG 58.575 41.667 9.83 7.36 34.05 4.35
5723 6330 8.783660 TCTGGTTAAGATTGATATACACTCCT 57.216 34.615 0.00 0.00 0.00 3.69
5816 6423 4.504461 CACTCATTTCAGTCCGTATGTAGC 59.496 45.833 0.00 0.00 0.00 3.58
5844 6451 9.878599 CATACCGAAATATCCAAAACATCTTAC 57.121 33.333 0.00 0.00 0.00 2.34
5855 6462 8.684386 TCCAAAACATCTTACAATAGTGAACA 57.316 30.769 0.00 0.00 0.00 3.18
6028 6635 7.067372 TGCAACATATAATTCCTCAGGTTCTTG 59.933 37.037 0.00 0.00 0.00 3.02
6029 6636 7.067494 GCAACATATAATTCCTCAGGTTCTTGT 59.933 37.037 0.00 0.00 0.00 3.16
6093 6700 3.127533 GCACACCCGCAGCTAAGG 61.128 66.667 0.00 0.00 0.00 2.69
6211 6819 5.885230 TTGATACAGGCTGAAAATCTGTG 57.115 39.130 23.66 0.00 41.26 3.66
6394 7002 1.466851 GCCAAAAGCTGCTCCCTGTT 61.467 55.000 1.00 0.00 38.99 3.16
6449 7057 6.094881 GGCAACTAACATAATTGGCAGAACTA 59.905 38.462 5.03 0.00 45.48 2.24
6450 7058 7.189512 GCAACTAACATAATTGGCAGAACTAG 58.810 38.462 0.00 0.00 0.00 2.57
6506 7114 2.542020 TCAGAGTGCCGAACATCAAA 57.458 45.000 0.00 0.00 0.00 2.69
6679 7288 0.403271 AGACTGTGAAGCCATGCCTT 59.597 50.000 0.00 0.00 0.00 4.35
6847 7457 9.322773 GTACATGTAATTTACCCTTAAGAGTCC 57.677 37.037 7.25 0.00 0.00 3.85
6871 7481 5.408880 AGAGTTCTTTCTAGCCCAGTAAC 57.591 43.478 0.00 0.00 0.00 2.50
6906 7516 3.308617 CCATGCTGATAATGGATGGGCTA 60.309 47.826 6.40 0.00 46.44 3.93
7064 7674 2.546778 TGTCCGTTGTTTCTGACTGTC 58.453 47.619 0.00 0.00 0.00 3.51
7077 7688 8.527810 TGTTTCTGACTGTCCTTTTGTATTTTT 58.472 29.630 5.17 0.00 0.00 1.94
7108 7719 3.861840 CTGTTATCTTGGTCGTGGATGT 58.138 45.455 0.00 0.00 0.00 3.06
7109 7720 3.857052 TGTTATCTTGGTCGTGGATGTC 58.143 45.455 0.00 0.00 0.00 3.06
7110 7721 3.195661 GTTATCTTGGTCGTGGATGTCC 58.804 50.000 0.00 0.00 0.00 4.02
7111 7722 1.275666 ATCTTGGTCGTGGATGTCCA 58.724 50.000 0.00 0.00 45.30 4.02
7123 7734 2.577563 TGGATGTCCATGAATCACTGGT 59.422 45.455 0.00 0.00 42.01 4.00
7124 7735 3.010472 TGGATGTCCATGAATCACTGGTT 59.990 43.478 0.00 0.73 42.01 3.67
7174 7791 8.656806 ACTATGTTAATAGCCCATAGTTTAGCA 58.343 33.333 8.96 0.00 45.46 3.49
7175 7792 7.986085 ATGTTAATAGCCCATAGTTTAGCAG 57.014 36.000 0.00 0.00 0.00 4.24
7176 7793 7.131907 TGTTAATAGCCCATAGTTTAGCAGA 57.868 36.000 0.00 0.00 0.00 4.26
7177 7794 7.570132 TGTTAATAGCCCATAGTTTAGCAGAA 58.430 34.615 0.00 0.00 0.00 3.02
7178 7795 8.050325 TGTTAATAGCCCATAGTTTAGCAGAAA 58.950 33.333 0.00 0.00 0.00 2.52
7179 7796 9.067986 GTTAATAGCCCATAGTTTAGCAGAAAT 57.932 33.333 0.00 0.00 0.00 2.17
7180 7797 9.640952 TTAATAGCCCATAGTTTAGCAGAAATT 57.359 29.630 0.00 0.00 0.00 1.82
7181 7798 7.751768 ATAGCCCATAGTTTAGCAGAAATTC 57.248 36.000 0.00 0.00 0.00 2.17
7182 7799 5.509498 AGCCCATAGTTTAGCAGAAATTCA 58.491 37.500 0.00 0.00 0.00 2.57
7183 7800 5.951747 AGCCCATAGTTTAGCAGAAATTCAA 59.048 36.000 0.00 0.00 0.00 2.69
7184 7801 6.036470 GCCCATAGTTTAGCAGAAATTCAAC 58.964 40.000 0.00 0.00 0.00 3.18
7185 7802 6.350110 GCCCATAGTTTAGCAGAAATTCAACA 60.350 38.462 0.00 0.00 0.00 3.33
7186 7803 7.631377 GCCCATAGTTTAGCAGAAATTCAACAT 60.631 37.037 0.00 0.00 0.00 2.71
7187 7804 8.253113 CCCATAGTTTAGCAGAAATTCAACATT 58.747 33.333 0.00 0.00 0.00 2.71
7188 7805 9.079833 CCATAGTTTAGCAGAAATTCAACATTG 57.920 33.333 0.00 0.00 0.00 2.82
7189 7806 9.079833 CATAGTTTAGCAGAAATTCAACATTGG 57.920 33.333 0.00 0.00 0.00 3.16
7190 7807 7.054491 AGTTTAGCAGAAATTCAACATTGGT 57.946 32.000 0.00 0.00 0.00 3.67
7191 7808 6.925165 AGTTTAGCAGAAATTCAACATTGGTG 59.075 34.615 0.00 0.00 0.00 4.17
7192 7809 4.261578 AGCAGAAATTCAACATTGGTGG 57.738 40.909 1.04 0.00 0.00 4.61
7241 7858 2.124570 GGGGATCTGTGCGCACAT 60.125 61.111 40.50 28.73 41.01 3.21
7242 7859 1.750399 GGGGATCTGTGCGCACATT 60.750 57.895 40.50 30.48 41.01 2.71
7243 7860 1.315257 GGGGATCTGTGCGCACATTT 61.315 55.000 40.50 30.13 41.01 2.32
7294 7917 5.163269 TGCATCAATATTCTACAGTGCCTCT 60.163 40.000 0.00 0.00 0.00 3.69
7337 7960 1.922447 TGGCCCACAATGGTCTTCTAT 59.078 47.619 0.00 0.00 35.17 1.98
7342 7965 2.684881 CCACAATGGTCTTCTATGGTGC 59.315 50.000 0.00 0.00 35.84 5.01
7422 8056 1.887344 ATCGGCCCAATTTGTGCCAC 61.887 55.000 20.62 0.00 45.63 5.01
7426 8060 1.905843 CCCAATTTGTGCCACCGGA 60.906 57.895 9.46 0.00 0.00 5.14
7427 8061 1.467678 CCCAATTTGTGCCACCGGAA 61.468 55.000 9.46 0.00 0.00 4.30
7487 8121 5.011982 TCGTGATCCCTTCTAATCCCTAT 57.988 43.478 0.00 0.00 0.00 2.57
7517 8152 5.131067 GGTTAATTCGCTTAATCCCTTCCT 58.869 41.667 0.00 0.00 32.12 3.36
7561 8196 6.092944 CCATTTAGTACGCATTAAACTGGTGA 59.907 38.462 0.00 0.00 0.00 4.02
7586 8221 3.119173 GCAAGCATACAAGCCCAATACAA 60.119 43.478 0.00 0.00 34.23 2.41
7587 8222 4.441913 GCAAGCATACAAGCCCAATACAAT 60.442 41.667 0.00 0.00 34.23 2.71
7625 8260 8.843262 TGCATCTAAATGAAACATCCTCATTAG 58.157 33.333 0.00 0.00 41.56 1.73
7697 8333 3.751479 AAGCCAAACAATTTCCTGGTC 57.249 42.857 0.00 0.00 0.00 4.02
7760 8397 3.998913 TGGCAATGAAGTACATCCTGA 57.001 42.857 0.00 0.00 38.38 3.86
7761 8398 4.299586 TGGCAATGAAGTACATCCTGAA 57.700 40.909 0.00 0.00 38.38 3.02
7762 8399 4.009675 TGGCAATGAAGTACATCCTGAAC 58.990 43.478 0.00 0.00 38.38 3.18
7763 8400 4.263462 TGGCAATGAAGTACATCCTGAACT 60.263 41.667 0.00 0.00 38.38 3.01
7764 8401 4.095483 GGCAATGAAGTACATCCTGAACTG 59.905 45.833 0.00 0.00 38.38 3.16
7765 8402 4.095483 GCAATGAAGTACATCCTGAACTGG 59.905 45.833 0.00 0.00 38.38 4.00
7766 8403 3.981071 TGAAGTACATCCTGAACTGGG 57.019 47.619 0.00 0.00 0.00 4.45
7767 8404 3.248024 TGAAGTACATCCTGAACTGGGT 58.752 45.455 0.00 0.00 0.00 4.51
7768 8405 3.260884 TGAAGTACATCCTGAACTGGGTC 59.739 47.826 0.00 0.00 0.00 4.46
7769 8406 1.825474 AGTACATCCTGAACTGGGTCG 59.175 52.381 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.820226 CCATCTGAGAGACCAAGCGA 59.180 55.000 0.00 0.00 0.00 4.93
1 2 0.534412 ACCATCTGAGAGACCAAGCG 59.466 55.000 0.00 0.00 0.00 4.68
2 3 2.011046 GCACCATCTGAGAGACCAAGC 61.011 57.143 0.00 0.00 0.00 4.01
3 4 1.277273 TGCACCATCTGAGAGACCAAG 59.723 52.381 0.00 0.00 0.00 3.61
4 5 1.002430 GTGCACCATCTGAGAGACCAA 59.998 52.381 5.22 0.00 0.00 3.67
5 6 0.610174 GTGCACCATCTGAGAGACCA 59.390 55.000 5.22 0.00 0.00 4.02
6 7 0.459237 CGTGCACCATCTGAGAGACC 60.459 60.000 12.15 0.00 0.00 3.85
7 8 0.528017 TCGTGCACCATCTGAGAGAC 59.472 55.000 12.15 0.00 0.00 3.36
8 9 1.478631 ATCGTGCACCATCTGAGAGA 58.521 50.000 12.15 0.00 0.00 3.10
9 10 1.931841 CAATCGTGCACCATCTGAGAG 59.068 52.381 12.15 0.00 0.00 3.20
10 11 1.276138 ACAATCGTGCACCATCTGAGA 59.724 47.619 12.15 0.50 0.00 3.27
11 12 1.395954 CACAATCGTGCACCATCTGAG 59.604 52.381 12.15 1.14 36.06 3.35
12 13 1.441738 CACAATCGTGCACCATCTGA 58.558 50.000 12.15 2.13 36.06 3.27
13 14 3.982213 CACAATCGTGCACCATCTG 57.018 52.632 12.15 7.98 36.06 2.90
25 26 1.067142 TCCTGGTACGAGTGCACAATC 60.067 52.381 21.04 7.88 0.00 2.67
26 27 0.973632 TCCTGGTACGAGTGCACAAT 59.026 50.000 21.04 6.17 0.00 2.71
27 28 0.753867 TTCCTGGTACGAGTGCACAA 59.246 50.000 21.04 0.00 0.00 3.33
28 29 0.317160 CTTCCTGGTACGAGTGCACA 59.683 55.000 21.04 0.00 0.00 4.57
29 30 0.317479 ACTTCCTGGTACGAGTGCAC 59.683 55.000 9.40 9.40 0.00 4.57
30 31 1.045407 AACTTCCTGGTACGAGTGCA 58.955 50.000 4.07 0.00 0.00 4.57
31 32 1.270147 ACAACTTCCTGGTACGAGTGC 60.270 52.381 4.07 0.00 0.00 4.40
32 33 2.814280 ACAACTTCCTGGTACGAGTG 57.186 50.000 4.07 0.00 0.00 3.51
33 34 3.759581 TCTACAACTTCCTGGTACGAGT 58.240 45.455 4.07 0.00 0.00 4.18
34 35 4.778534 TTCTACAACTTCCTGGTACGAG 57.221 45.455 0.00 0.00 0.00 4.18
35 36 5.711506 TGTATTCTACAACTTCCTGGTACGA 59.288 40.000 0.00 0.00 35.38 3.43
36 37 5.803967 GTGTATTCTACAACTTCCTGGTACG 59.196 44.000 0.00 0.00 40.93 3.67
37 38 5.803967 CGTGTATTCTACAACTTCCTGGTAC 59.196 44.000 0.00 0.00 40.93 3.34
38 39 5.711506 TCGTGTATTCTACAACTTCCTGGTA 59.288 40.000 0.00 0.00 40.93 3.25
39 40 4.525487 TCGTGTATTCTACAACTTCCTGGT 59.475 41.667 0.00 0.00 40.93 4.00
40 41 5.068234 TCGTGTATTCTACAACTTCCTGG 57.932 43.478 0.00 0.00 40.93 4.45
41 42 7.596749 AAATCGTGTATTCTACAACTTCCTG 57.403 36.000 0.00 0.00 40.93 3.86
42 43 8.617290 AAAAATCGTGTATTCTACAACTTCCT 57.383 30.769 0.00 0.00 40.93 3.36
86 87 4.214119 ACAACATAGTAAGCACAGCTGTTG 59.786 41.667 18.94 12.96 41.45 3.33
88 89 4.008074 ACAACATAGTAAGCACAGCTGT 57.992 40.909 15.25 15.25 39.62 4.40
89 90 5.582269 ACATACAACATAGTAAGCACAGCTG 59.418 40.000 13.48 13.48 39.62 4.24
90 91 5.734720 ACATACAACATAGTAAGCACAGCT 58.265 37.500 0.00 0.00 42.56 4.24
183 184 3.252458 ACCAAAGCAAGTCGTATGAAACC 59.748 43.478 0.00 0.00 0.00 3.27
295 296 4.268405 GGGCAAACAATCATAATCTTTGCG 59.732 41.667 7.19 0.00 44.97 4.85
338 339 6.729187 AGTGTCAAAGAAAGATGCAAGTTAC 58.271 36.000 0.00 0.00 0.00 2.50
486 671 4.397417 GGACATGATCACTGAAGGAAAAGG 59.603 45.833 0.00 0.00 0.00 3.11
514 699 7.201635 CGATCAGTAAATGTGGATTCATTGTCA 60.202 37.037 0.00 0.00 37.96 3.58
733 921 4.002982 TCAAGACATCCATACAACTGCAC 58.997 43.478 0.00 0.00 0.00 4.57
736 924 9.726232 CATATTTTCAAGACATCCATACAACTG 57.274 33.333 0.00 0.00 0.00 3.16
837 1026 3.500448 TGGCAGAGTGGTGTTTCAATA 57.500 42.857 0.00 0.00 0.00 1.90
1504 1693 5.562890 GCAGTTACCTAAAAGGCAAGAAGTG 60.563 44.000 0.00 0.00 39.63 3.16
1550 1739 5.980698 CATATGTTGGAGCAAGTCACTAG 57.019 43.478 0.00 0.00 0.00 2.57
1614 1803 6.309251 CACTCTTCCGTGATCTAAAAAGTCTC 59.691 42.308 0.00 0.00 37.06 3.36
1628 1843 6.159988 AGACTTTTTAGATCACTCTTCCGTG 58.840 40.000 0.00 0.00 36.25 4.94
1629 1844 6.347859 AGACTTTTTAGATCACTCTTCCGT 57.652 37.500 0.00 0.00 32.66 4.69
1630 1845 7.813148 TGTAAGACTTTTTAGATCACTCTTCCG 59.187 37.037 0.00 0.00 32.66 4.30
1631 1846 9.660180 ATGTAAGACTTTTTAGATCACTCTTCC 57.340 33.333 0.00 0.00 32.66 3.46
1644 1859 9.057089 CCTCTGTACAGAAATGTAAGACTTTTT 57.943 33.333 25.14 0.00 36.94 1.94
1645 1860 7.661847 CCCTCTGTACAGAAATGTAAGACTTTT 59.338 37.037 25.14 0.00 36.94 2.27
1646 1861 7.016268 TCCCTCTGTACAGAAATGTAAGACTTT 59.984 37.037 25.14 0.00 36.94 2.66
1647 1862 6.497259 TCCCTCTGTACAGAAATGTAAGACTT 59.503 38.462 25.14 0.00 36.94 3.01
1648 1863 6.017192 TCCCTCTGTACAGAAATGTAAGACT 58.983 40.000 25.14 0.00 36.94 3.24
1649 1864 6.071278 ACTCCCTCTGTACAGAAATGTAAGAC 60.071 42.308 25.14 0.00 36.94 3.01
1650 1865 6.017192 ACTCCCTCTGTACAGAAATGTAAGA 58.983 40.000 25.14 12.92 36.94 2.10
1651 1866 6.287589 ACTCCCTCTGTACAGAAATGTAAG 57.712 41.667 25.14 17.46 36.94 2.34
1652 1867 6.952358 AGTACTCCCTCTGTACAGAAATGTAA 59.048 38.462 25.14 8.46 41.76 2.41
1653 1868 6.491383 AGTACTCCCTCTGTACAGAAATGTA 58.509 40.000 25.14 20.05 41.76 2.29
1654 1869 5.334421 AGTACTCCCTCTGTACAGAAATGT 58.666 41.667 25.14 20.89 41.76 2.71
1655 1870 5.923733 AGTACTCCCTCTGTACAGAAATG 57.076 43.478 25.14 16.13 41.76 2.32
1662 1877 9.134055 ACATTTATCTAAGTACTCCCTCTGTAC 57.866 37.037 0.00 0.00 40.19 2.90
1788 2003 5.104735 GGAAAAGACCACAGGATGATACTCT 60.105 44.000 0.00 0.00 39.69 3.24
2679 2897 6.403092 CCAATAACAGCGTGTAATCAATGTCA 60.403 38.462 0.00 0.00 0.00 3.58
3061 3279 2.832129 CACTAACCTTGTAGGCTCAGGA 59.168 50.000 12.94 0.00 39.63 3.86
3211 3452 0.182061 CATATGCAGGCACCAGGTCT 59.818 55.000 0.00 0.00 0.00 3.85
3355 3596 0.766131 TTTTCAGTAACTGCCCCGGA 59.234 50.000 0.73 0.00 0.00 5.14
3401 3642 7.121168 TGAAATTGGCAAGAGTTAGTCTATTGG 59.879 37.037 5.96 0.00 43.22 3.16
3611 3854 4.760204 GGAAACGGGTATTCATAAGATGGG 59.240 45.833 0.00 0.00 0.00 4.00
3618 3861 9.008965 CAATGATAATGGAAACGGGTATTCATA 57.991 33.333 0.00 0.00 0.00 2.15
3619 3862 7.505585 ACAATGATAATGGAAACGGGTATTCAT 59.494 33.333 0.00 0.00 0.00 2.57
3628 3898 7.904977 CACAAGAGTACAATGATAATGGAAACG 59.095 37.037 0.00 0.00 0.00 3.60
3706 3978 3.126858 TCAAAGAAGTGATTATGCGCCAC 59.873 43.478 4.18 5.11 0.00 5.01
3733 4005 6.318144 ACATGCTGAGAAATCCAAGATAACAG 59.682 38.462 0.00 0.00 0.00 3.16
3741 4013 2.358957 CCGACATGCTGAGAAATCCAA 58.641 47.619 0.00 0.00 0.00 3.53
3760 4032 3.308438 AAACATCTGCATTGTTCAGCC 57.692 42.857 13.66 0.00 36.32 4.85
3807 4080 6.193514 CATGTACATGTAACTGGCAAATGA 57.806 37.500 24.91 0.00 34.23 2.57
3833 4106 3.149981 TGGATGCAAAATACCGTCACAA 58.850 40.909 0.00 0.00 0.00 3.33
3921 4194 9.379791 TCATAGTAGTATCACACAGATATACGG 57.620 37.037 0.00 0.00 41.10 4.02
3999 4272 4.456911 TGAAGCTGATCAGTTTCCAATGAC 59.543 41.667 35.22 18.90 44.68 3.06
4002 4275 5.507637 AGATGAAGCTGATCAGTTTCCAAT 58.492 37.500 35.22 27.08 44.68 3.16
4017 4290 2.029649 TGCAGAAAGCCAAAGATGAAGC 60.030 45.455 0.00 0.00 44.83 3.86
4387 4802 6.703607 CAGACTTATTATACTGGGAAGTGCAG 59.296 42.308 0.00 0.00 30.66 4.41
4803 5279 9.289782 AGGTAAAATATGGCATTACTCATCTTC 57.710 33.333 4.78 0.00 31.73 2.87
4836 5312 1.909532 CTTAGAACGTTACGCTCACCG 59.090 52.381 10.76 0.00 44.21 4.94
4843 5319 5.315982 TGTATGTCGTCTTAGAACGTTACG 58.684 41.667 13.01 13.01 43.08 3.18
5068 5544 5.829924 AGGGATGTACTCAATTATTGCAAGG 59.170 40.000 4.94 0.00 0.00 3.61
5280 5756 2.042842 TCCCATCTTTTGCCATTCCTGA 59.957 45.455 0.00 0.00 0.00 3.86
5453 5948 6.895209 CAGTGTACTGCTTTGTTTATTTCG 57.105 37.500 0.00 0.00 37.15 3.46
5562 6169 5.710513 TGAGGGAAAAATCACATGTGAAG 57.289 39.130 31.00 3.77 43.58 3.02
5578 6185 5.424757 CGTCAATTACTGGTAAATGAGGGA 58.575 41.667 16.80 1.75 36.11 4.20
5816 6423 6.490040 AGATGTTTTGGATATTTCGGTATGGG 59.510 38.462 0.00 0.00 0.00 4.00
5844 6451 9.099454 GTTTATTACTCCCTCTGTTCACTATTG 57.901 37.037 0.00 0.00 0.00 1.90
5855 6462 5.033522 AGCCTCTTGTTTATTACTCCCTCT 58.966 41.667 0.00 0.00 0.00 3.69
6028 6635 9.460906 GTATGCCTAGTGTTTAGATAGTACAAC 57.539 37.037 0.00 0.00 0.00 3.32
6029 6636 9.417561 AGTATGCCTAGTGTTTAGATAGTACAA 57.582 33.333 0.00 0.00 0.00 2.41
6093 6700 0.251341 ACCCCACAACAAGATGCCTC 60.251 55.000 0.00 0.00 0.00 4.70
6255 6863 7.553044 ACACCTAGAAAATAGAACATGTAAGCC 59.447 37.037 0.00 0.00 0.00 4.35
6449 7057 5.474532 TGTCAGCAAAGCACTAAAATGATCT 59.525 36.000 0.00 0.00 0.00 2.75
6450 7058 5.702865 TGTCAGCAAAGCACTAAAATGATC 58.297 37.500 0.00 0.00 0.00 2.92
6506 7114 3.983344 GCAGAACTTTCGCAACATTGAAT 59.017 39.130 0.00 0.00 0.00 2.57
6679 7288 2.359975 TCCTCGCTCAGCTCGACA 60.360 61.111 0.00 0.00 32.08 4.35
6847 7457 2.494073 ACTGGGCTAGAAAGAACTCTCG 59.506 50.000 4.33 0.00 0.00 4.04
6871 7481 9.376075 CATTATCAGCATGGAAGTATAGGTAAG 57.624 37.037 0.00 0.00 36.16 2.34
6931 7541 6.237835 CGTGTCTCGTTGCTCAATTATACAAT 60.238 38.462 0.00 0.00 34.52 2.71
7077 7688 6.653320 ACGACCAAGATAACAGCAGAAATTTA 59.347 34.615 0.00 0.00 0.00 1.40
7089 7700 3.195661 GGACATCCACGACCAAGATAAC 58.804 50.000 0.00 0.00 35.64 1.89
7108 7719 3.595173 CACGTAACCAGTGATTCATGGA 58.405 45.455 16.95 0.00 41.83 3.41
7109 7720 2.095853 GCACGTAACCAGTGATTCATGG 59.904 50.000 11.36 11.36 41.83 3.66
7110 7721 2.741517 TGCACGTAACCAGTGATTCATG 59.258 45.455 0.07 0.00 41.83 3.07
7111 7722 3.052455 TGCACGTAACCAGTGATTCAT 57.948 42.857 0.07 0.00 41.83 2.57
7112 7723 2.535012 TGCACGTAACCAGTGATTCA 57.465 45.000 0.07 0.00 41.83 2.57
7113 7724 2.806244 ACTTGCACGTAACCAGTGATTC 59.194 45.455 0.00 0.00 41.83 2.52
7114 7725 2.846193 ACTTGCACGTAACCAGTGATT 58.154 42.857 0.00 0.00 41.83 2.57
7115 7726 2.543777 ACTTGCACGTAACCAGTGAT 57.456 45.000 0.00 0.00 41.83 3.06
7116 7727 2.363038 AGTACTTGCACGTAACCAGTGA 59.637 45.455 4.40 0.00 41.83 3.41
7117 7728 2.750948 AGTACTTGCACGTAACCAGTG 58.249 47.619 4.40 0.00 42.15 3.66
7118 7729 4.796038 ATAGTACTTGCACGTAACCAGT 57.204 40.909 4.40 0.00 0.00 4.00
7119 7730 7.585286 TTAAATAGTACTTGCACGTAACCAG 57.415 36.000 4.40 0.00 0.00 4.00
7120 7731 8.550710 AATTAAATAGTACTTGCACGTAACCA 57.449 30.769 4.40 0.00 0.00 3.67
7121 7732 8.658609 TGAATTAAATAGTACTTGCACGTAACC 58.341 33.333 4.40 0.00 0.00 2.85
7124 7735 9.426837 AGTTGAATTAAATAGTACTTGCACGTA 57.573 29.630 0.00 0.00 0.00 3.57
7170 7787 4.832266 ACCACCAATGTTGAATTTCTGCTA 59.168 37.500 0.00 0.00 0.00 3.49
7173 7790 4.202243 ACCACCACCAATGTTGAATTTCTG 60.202 41.667 0.00 0.00 0.00 3.02
7174 7791 3.966665 ACCACCACCAATGTTGAATTTCT 59.033 39.130 0.00 0.00 0.00 2.52
7175 7792 4.335400 ACCACCACCAATGTTGAATTTC 57.665 40.909 0.00 0.00 0.00 2.17
7176 7793 5.541868 TGATACCACCACCAATGTTGAATTT 59.458 36.000 0.00 0.00 0.00 1.82
7177 7794 5.083122 TGATACCACCACCAATGTTGAATT 58.917 37.500 0.00 0.00 0.00 2.17
7178 7795 4.671831 TGATACCACCACCAATGTTGAAT 58.328 39.130 0.00 0.00 0.00 2.57
7179 7796 4.105754 TGATACCACCACCAATGTTGAA 57.894 40.909 0.00 0.00 0.00 2.69
7180 7797 3.797559 TGATACCACCACCAATGTTGA 57.202 42.857 0.00 0.00 0.00 3.18
7181 7798 6.239008 GGATAATGATACCACCACCAATGTTG 60.239 42.308 0.00 0.00 0.00 3.33
7182 7799 5.833131 GGATAATGATACCACCACCAATGTT 59.167 40.000 0.00 0.00 0.00 2.71
7183 7800 5.385198 GGATAATGATACCACCACCAATGT 58.615 41.667 0.00 0.00 0.00 2.71
7184 7801 4.455533 CGGATAATGATACCACCACCAATG 59.544 45.833 0.00 0.00 0.00 2.82
7185 7802 4.349636 TCGGATAATGATACCACCACCAAT 59.650 41.667 0.00 0.00 0.00 3.16
7186 7803 3.712218 TCGGATAATGATACCACCACCAA 59.288 43.478 0.00 0.00 0.00 3.67
7187 7804 3.310193 TCGGATAATGATACCACCACCA 58.690 45.455 0.00 0.00 0.00 4.17
7188 7805 3.864921 GCTCGGATAATGATACCACCACC 60.865 52.174 0.00 0.00 0.00 4.61
7189 7806 3.326747 GCTCGGATAATGATACCACCAC 58.673 50.000 0.00 0.00 0.00 4.16
7190 7807 2.301870 GGCTCGGATAATGATACCACCA 59.698 50.000 0.00 0.00 0.00 4.17
7191 7808 2.674177 CGGCTCGGATAATGATACCACC 60.674 54.545 0.00 0.00 0.00 4.61
7192 7809 2.029290 ACGGCTCGGATAATGATACCAC 60.029 50.000 0.00 0.00 0.00 4.16
7241 7858 7.959689 AAAGCAATACAACATGCAATACAAA 57.040 28.000 0.00 0.00 44.95 2.83
7242 7859 7.654923 TGAAAAGCAATACAACATGCAATACAA 59.345 29.630 0.00 0.00 44.95 2.41
7243 7860 7.150640 TGAAAAGCAATACAACATGCAATACA 58.849 30.769 0.00 0.00 44.95 2.29
7294 7917 3.190327 CAGCATTAATGGACAACCGACAA 59.810 43.478 17.02 0.00 39.42 3.18
7337 7960 4.792521 AAAAGTAACAACAACAGCACCA 57.207 36.364 0.00 0.00 0.00 4.17
7342 7965 6.033966 GGTCCAGAAAAAGTAACAACAACAG 58.966 40.000 0.00 0.00 0.00 3.16
7416 8039 1.826487 AAACCAGTTCCGGTGGCAC 60.826 57.895 9.70 9.70 39.95 5.01
7422 8056 1.394618 TCAAACCAAACCAGTTCCGG 58.605 50.000 0.00 0.00 0.00 5.14
7426 8060 3.909732 TCCTCATCAAACCAAACCAGTT 58.090 40.909 0.00 0.00 0.00 3.16
7427 8061 3.593442 TCCTCATCAAACCAAACCAGT 57.407 42.857 0.00 0.00 0.00 4.00
7456 8090 3.639094 AGAAGGGATCACGATTGACTAGG 59.361 47.826 0.00 0.00 33.38 3.02
7487 8121 7.123547 AGGGATTAAGCGAATTAACCAAAATGA 59.876 33.333 0.00 0.00 36.20 2.57
7545 8180 3.216147 GCATTCACCAGTTTAATGCGT 57.784 42.857 10.29 0.00 44.09 5.24
7561 8196 1.559368 TGGGCTTGTATGCTTGCATT 58.441 45.000 13.52 0.00 0.00 3.56
7625 8260 7.806690 TGATGCTTAACATAGTTCAGTTCAAC 58.193 34.615 0.00 0.00 39.84 3.18
7664 8300 8.729805 AATTGTTTGGCTTTTCAACTTTATGA 57.270 26.923 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.