Multiple sequence alignment - TraesCS5D01G172400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G172400 chr5D 100.000 2921 0 0 1 2921 269297080 269294160 0.000000e+00 5395
1 TraesCS5D01G172400 chr5D 100.000 233 0 0 3208 3440 269293873 269293641 6.820000e-117 431
2 TraesCS5D01G172400 chr5D 94.079 152 9 0 489 640 394218092 394217941 7.420000e-57 231
3 TraesCS5D01G172400 chr5B 96.037 1615 51 7 1319 2921 305048708 305047095 0.000000e+00 2615
4 TraesCS5D01G172400 chr5B 87.360 625 31 18 645 1243 305049331 305048729 0.000000e+00 673
5 TraesCS5D01G172400 chr5B 95.279 233 11 0 3208 3440 305046809 305046577 1.510000e-98 370
6 TraesCS5D01G172400 chr5B 88.346 266 29 2 1 264 305049588 305049323 5.540000e-83 318
7 TraesCS5D01G172400 chr5B 92.810 153 11 0 485 637 513797916 513798068 4.470000e-54 222
8 TraesCS5D01G172400 chr5A 94.583 1680 38 14 852 2522 357807599 357805964 0.000000e+00 2549
9 TraesCS5D01G172400 chr5A 92.405 158 10 2 645 801 357808473 357808317 1.240000e-54 224
10 TraesCS5D01G172400 chr5A 95.575 113 5 0 527 639 370194529 370194641 7.580000e-42 182
11 TraesCS5D01G172400 chr5A 82.500 160 21 5 2605 2762 357749143 357748989 2.150000e-27 134
12 TraesCS5D01G172400 chr5A 88.372 86 9 1 100 184 357808659 357808574 6.070000e-18 102
13 TraesCS5D01G172400 chr2B 93.631 157 9 1 486 641 741989098 741989254 2.060000e-57 233
14 TraesCS5D01G172400 chr3B 94.000 150 9 0 489 638 25486026 25486175 9.600000e-56 228
15 TraesCS5D01G172400 chr3D 92.763 152 10 1 489 640 550743342 550743492 5.780000e-53 219
16 TraesCS5D01G172400 chrUn 92.157 153 12 0 485 637 291208358 291208206 2.080000e-52 217
17 TraesCS5D01G172400 chr1A 91.613 155 13 0 488 642 437719970 437719816 7.480000e-52 215
18 TraesCS5D01G172400 chr4A 90.850 153 13 1 489 641 567482980 567482829 1.620000e-48 204
19 TraesCS5D01G172400 chr4A 81.618 136 11 5 265 400 656741244 656741123 2.180000e-17 100
20 TraesCS5D01G172400 chr1B 87.079 178 9 1 265 442 681008307 681008144 4.530000e-44 189
21 TraesCS5D01G172400 chr4D 85.430 151 11 3 290 440 328996817 328996956 2.770000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G172400 chr5D 269293641 269297080 3439 True 2913.000000 5395 100.000000 1 3440 2 chr5D.!!$R2 3439
1 TraesCS5D01G172400 chr5B 305046577 305049588 3011 True 994.000000 2615 91.755500 1 3440 4 chr5B.!!$R1 3439
2 TraesCS5D01G172400 chr5A 357805964 357808659 2695 True 958.333333 2549 91.786667 100 2522 3 chr5A.!!$R2 2422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 585 0.107703 GGTTCACATCCAGCCATCGA 60.108 55.0 0.0 0.0 0.00 3.59 F
636 668 0.235926 GTCGGCTGTGAAGCAGTTTC 59.764 55.0 0.0 0.0 46.64 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 3078 0.304705 ACAAAGCAGCAAGTTCGTCG 59.695 50.000 0.0 0.0 0.0 5.12 R
2625 3384 1.134037 GGGGTGTGTGTGTTAAGTGGA 60.134 52.381 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 24 3.084786 GAGGTGTCCTGGAAAAAGATGG 58.915 50.000 0.00 0.00 31.76 3.51
29 31 6.317391 GTGTCCTGGAAAAAGATGGATTAGAG 59.683 42.308 0.00 0.00 0.00 2.43
34 36 6.666678 TGGAAAAAGATGGATTAGAGATGCT 58.333 36.000 0.00 0.00 0.00 3.79
42 44 3.716353 TGGATTAGAGATGCTTTAGGCCA 59.284 43.478 5.01 0.00 40.92 5.36
52 54 1.202348 GCTTTAGGCCATGTTCGCTTT 59.798 47.619 5.01 0.00 34.27 3.51
54 56 2.192664 TTAGGCCATGTTCGCTTTCA 57.807 45.000 5.01 0.00 0.00 2.69
55 57 2.418368 TAGGCCATGTTCGCTTTCAT 57.582 45.000 5.01 0.00 0.00 2.57
56 58 1.098050 AGGCCATGTTCGCTTTCATC 58.902 50.000 5.01 0.00 0.00 2.92
63 65 2.426522 TGTTCGCTTTCATCCCTTCTG 58.573 47.619 0.00 0.00 0.00 3.02
130 132 1.225704 CCTCCTCATCCCTGCCAAC 59.774 63.158 0.00 0.00 0.00 3.77
158 160 0.693049 ATTCCTTGTCAACCGAGGCT 59.307 50.000 0.00 0.00 43.72 4.58
163 165 1.476845 TTGTCAACCGAGGCTAGGCA 61.477 55.000 19.70 0.41 0.00 4.75
184 187 4.651778 CATTAGAGTGTTTGGTCCCTTGA 58.348 43.478 0.00 0.00 0.00 3.02
195 200 3.167485 TGGTCCCTTGAGTACGTACAAT 58.833 45.455 26.55 7.86 0.00 2.71
203 208 5.298777 CCTTGAGTACGTACAATAGCCTACT 59.701 44.000 26.55 4.15 0.00 2.57
212 217 4.498894 ACAATAGCCTACTAACAACCCC 57.501 45.455 0.00 0.00 30.45 4.95
213 218 3.118519 ACAATAGCCTACTAACAACCCCG 60.119 47.826 0.00 0.00 30.45 5.73
250 282 2.936919 ATGGAGAACACTTCACTGCA 57.063 45.000 0.00 0.00 36.55 4.41
257 289 3.375299 AGAACACTTCACTGCAGACAAAC 59.625 43.478 23.35 2.61 0.00 2.93
258 290 2.017049 ACACTTCACTGCAGACAAACC 58.983 47.619 23.35 0.00 0.00 3.27
264 296 2.163412 TCACTGCAGACAAACCAACAAC 59.837 45.455 23.35 0.00 0.00 3.32
265 297 2.094803 CACTGCAGACAAACCAACAACA 60.095 45.455 23.35 0.00 0.00 3.33
266 298 2.560542 ACTGCAGACAAACCAACAACAA 59.439 40.909 23.35 0.00 0.00 2.83
267 299 3.195396 ACTGCAGACAAACCAACAACAAT 59.805 39.130 23.35 0.00 0.00 2.71
268 300 4.400884 ACTGCAGACAAACCAACAACAATA 59.599 37.500 23.35 0.00 0.00 1.90
269 301 5.105554 ACTGCAGACAAACCAACAACAATAA 60.106 36.000 23.35 0.00 0.00 1.40
270 302 5.911752 TGCAGACAAACCAACAACAATAAT 58.088 33.333 0.00 0.00 0.00 1.28
271 303 5.982516 TGCAGACAAACCAACAACAATAATC 59.017 36.000 0.00 0.00 0.00 1.75
272 304 5.405269 GCAGACAAACCAACAACAATAATCC 59.595 40.000 0.00 0.00 0.00 3.01
273 305 6.738453 GCAGACAAACCAACAACAATAATCCT 60.738 38.462 0.00 0.00 0.00 3.24
274 306 7.523052 GCAGACAAACCAACAACAATAATCCTA 60.523 37.037 0.00 0.00 0.00 2.94
275 307 7.807907 CAGACAAACCAACAACAATAATCCTAC 59.192 37.037 0.00 0.00 0.00 3.18
276 308 7.504238 AGACAAACCAACAACAATAATCCTACA 59.496 33.333 0.00 0.00 0.00 2.74
277 309 7.430441 ACAAACCAACAACAATAATCCTACAC 58.570 34.615 0.00 0.00 0.00 2.90
278 310 6.584185 AACCAACAACAATAATCCTACACC 57.416 37.500 0.00 0.00 0.00 4.16
279 311 5.887754 ACCAACAACAATAATCCTACACCT 58.112 37.500 0.00 0.00 0.00 4.00
280 312 7.023171 ACCAACAACAATAATCCTACACCTA 57.977 36.000 0.00 0.00 0.00 3.08
281 313 6.882678 ACCAACAACAATAATCCTACACCTAC 59.117 38.462 0.00 0.00 0.00 3.18
282 314 6.882140 CCAACAACAATAATCCTACACCTACA 59.118 38.462 0.00 0.00 0.00 2.74
283 315 7.392113 CCAACAACAATAATCCTACACCTACAA 59.608 37.037 0.00 0.00 0.00 2.41
284 316 8.788806 CAACAACAATAATCCTACACCTACAAA 58.211 33.333 0.00 0.00 0.00 2.83
285 317 8.561738 ACAACAATAATCCTACACCTACAAAG 57.438 34.615 0.00 0.00 0.00 2.77
300 332 5.388408 CTACAAAGGACTACGAAGAGGTT 57.612 43.478 0.00 0.00 0.00 3.50
301 333 6.506500 CTACAAAGGACTACGAAGAGGTTA 57.493 41.667 0.00 0.00 0.00 2.85
302 334 5.131594 ACAAAGGACTACGAAGAGGTTAC 57.868 43.478 0.00 0.00 0.00 2.50
303 335 4.164294 CAAAGGACTACGAAGAGGTTACG 58.836 47.826 0.00 0.00 0.00 3.18
304 336 3.064900 AGGACTACGAAGAGGTTACGT 57.935 47.619 0.00 0.00 42.70 3.57
305 337 4.207891 AGGACTACGAAGAGGTTACGTA 57.792 45.455 0.00 0.00 40.61 3.57
306 338 4.579869 AGGACTACGAAGAGGTTACGTAA 58.420 43.478 3.29 3.29 40.88 3.18
307 339 5.003804 AGGACTACGAAGAGGTTACGTAAA 58.996 41.667 10.11 0.00 40.88 2.01
308 340 5.089411 GGACTACGAAGAGGTTACGTAAAC 58.911 45.833 15.67 15.67 40.88 2.01
319 351 4.277515 GTTACGTAAACCTTCCTTCCCT 57.722 45.455 10.11 0.00 31.38 4.20
320 352 5.405935 GTTACGTAAACCTTCCTTCCCTA 57.594 43.478 10.11 0.00 31.38 3.53
321 353 5.793817 GTTACGTAAACCTTCCTTCCCTAA 58.206 41.667 10.11 0.00 31.38 2.69
322 354 6.409704 GTTACGTAAACCTTCCTTCCCTAAT 58.590 40.000 10.11 0.00 31.38 1.73
323 355 5.509832 ACGTAAACCTTCCTTCCCTAATT 57.490 39.130 0.00 0.00 0.00 1.40
324 356 5.494724 ACGTAAACCTTCCTTCCCTAATTC 58.505 41.667 0.00 0.00 0.00 2.17
325 357 5.250082 ACGTAAACCTTCCTTCCCTAATTCT 59.750 40.000 0.00 0.00 0.00 2.40
326 358 5.816258 CGTAAACCTTCCTTCCCTAATTCTC 59.184 44.000 0.00 0.00 0.00 2.87
327 359 6.351966 CGTAAACCTTCCTTCCCTAATTCTCT 60.352 42.308 0.00 0.00 0.00 3.10
328 360 5.443230 AACCTTCCTTCCCTAATTCTCTG 57.557 43.478 0.00 0.00 0.00 3.35
329 361 3.201045 ACCTTCCTTCCCTAATTCTCTGC 59.799 47.826 0.00 0.00 0.00 4.26
330 362 3.434310 CCTTCCTTCCCTAATTCTCTGCC 60.434 52.174 0.00 0.00 0.00 4.85
331 363 2.127708 TCCTTCCCTAATTCTCTGCCC 58.872 52.381 0.00 0.00 0.00 5.36
332 364 1.143889 CCTTCCCTAATTCTCTGCCCC 59.856 57.143 0.00 0.00 0.00 5.80
333 365 1.143889 CTTCCCTAATTCTCTGCCCCC 59.856 57.143 0.00 0.00 0.00 5.40
354 386 3.723922 CCCCACCCCCGACGATTT 61.724 66.667 0.00 0.00 0.00 2.17
355 387 2.124860 CCCACCCCCGACGATTTC 60.125 66.667 0.00 0.00 0.00 2.17
356 388 2.124860 CCACCCCCGACGATTTCC 60.125 66.667 0.00 0.00 0.00 3.13
357 389 2.666207 CACCCCCGACGATTTCCA 59.334 61.111 0.00 0.00 0.00 3.53
358 390 1.449601 CACCCCCGACGATTTCCAG 60.450 63.158 0.00 0.00 0.00 3.86
359 391 1.916777 ACCCCCGACGATTTCCAGT 60.917 57.895 0.00 0.00 0.00 4.00
360 392 1.449601 CCCCCGACGATTTCCAGTG 60.450 63.158 0.00 0.00 0.00 3.66
361 393 1.449601 CCCCGACGATTTCCAGTGG 60.450 63.158 1.40 1.40 0.00 4.00
362 394 1.449601 CCCGACGATTTCCAGTGGG 60.450 63.158 9.92 0.00 36.23 4.61
363 395 1.449601 CCGACGATTTCCAGTGGGG 60.450 63.158 9.92 0.00 33.40 4.96
364 396 1.449601 CGACGATTTCCAGTGGGGG 60.450 63.158 9.92 0.00 37.22 5.40
365 397 1.683441 GACGATTTCCAGTGGGGGT 59.317 57.895 9.92 0.18 37.22 4.95
366 398 0.676782 GACGATTTCCAGTGGGGGTG 60.677 60.000 9.92 0.00 37.22 4.61
367 399 1.378514 CGATTTCCAGTGGGGGTGG 60.379 63.158 9.92 0.00 37.22 4.61
368 400 1.000359 GATTTCCAGTGGGGGTGGG 60.000 63.158 9.92 0.00 35.58 4.61
369 401 3.238197 ATTTCCAGTGGGGGTGGGC 62.238 63.158 9.92 0.00 35.58 5.36
385 417 4.858680 GCCCCGCCTCTGCCTAAC 62.859 72.222 0.00 0.00 0.00 2.34
386 418 3.399181 CCCCGCCTCTGCCTAACA 61.399 66.667 0.00 0.00 0.00 2.41
387 419 2.125106 CCCGCCTCTGCCTAACAC 60.125 66.667 0.00 0.00 0.00 3.32
388 420 2.125106 CCGCCTCTGCCTAACACC 60.125 66.667 0.00 0.00 0.00 4.16
389 421 2.662596 CGCCTCTGCCTAACACCA 59.337 61.111 0.00 0.00 0.00 4.17
390 422 1.003839 CGCCTCTGCCTAACACCAA 60.004 57.895 0.00 0.00 0.00 3.67
391 423 0.392998 CGCCTCTGCCTAACACCAAT 60.393 55.000 0.00 0.00 0.00 3.16
392 424 1.383523 GCCTCTGCCTAACACCAATC 58.616 55.000 0.00 0.00 0.00 2.67
393 425 1.340017 GCCTCTGCCTAACACCAATCA 60.340 52.381 0.00 0.00 0.00 2.57
394 426 2.879756 GCCTCTGCCTAACACCAATCAA 60.880 50.000 0.00 0.00 0.00 2.57
395 427 3.420893 CCTCTGCCTAACACCAATCAAA 58.579 45.455 0.00 0.00 0.00 2.69
396 428 3.826157 CCTCTGCCTAACACCAATCAAAA 59.174 43.478 0.00 0.00 0.00 2.44
397 429 4.463891 CCTCTGCCTAACACCAATCAAAAT 59.536 41.667 0.00 0.00 0.00 1.82
398 430 5.393461 CCTCTGCCTAACACCAATCAAAATC 60.393 44.000 0.00 0.00 0.00 2.17
399 431 5.324409 TCTGCCTAACACCAATCAAAATCT 58.676 37.500 0.00 0.00 0.00 2.40
400 432 6.480763 TCTGCCTAACACCAATCAAAATCTA 58.519 36.000 0.00 0.00 0.00 1.98
401 433 6.374333 TCTGCCTAACACCAATCAAAATCTAC 59.626 38.462 0.00 0.00 0.00 2.59
402 434 5.417580 TGCCTAACACCAATCAAAATCTACC 59.582 40.000 0.00 0.00 0.00 3.18
403 435 5.417580 GCCTAACACCAATCAAAATCTACCA 59.582 40.000 0.00 0.00 0.00 3.25
404 436 6.071616 GCCTAACACCAATCAAAATCTACCAA 60.072 38.462 0.00 0.00 0.00 3.67
405 437 7.312899 CCTAACACCAATCAAAATCTACCAAC 58.687 38.462 0.00 0.00 0.00 3.77
406 438 6.976934 AACACCAATCAAAATCTACCAACT 57.023 33.333 0.00 0.00 0.00 3.16
407 439 6.331369 ACACCAATCAAAATCTACCAACTG 57.669 37.500 0.00 0.00 0.00 3.16
408 440 5.163513 CACCAATCAAAATCTACCAACTGC 58.836 41.667 0.00 0.00 0.00 4.40
409 441 4.220602 ACCAATCAAAATCTACCAACTGCC 59.779 41.667 0.00 0.00 0.00 4.85
410 442 4.463891 CCAATCAAAATCTACCAACTGCCT 59.536 41.667 0.00 0.00 0.00 4.75
411 443 5.652014 CCAATCAAAATCTACCAACTGCCTA 59.348 40.000 0.00 0.00 0.00 3.93
412 444 6.152661 CCAATCAAAATCTACCAACTGCCTAA 59.847 38.462 0.00 0.00 0.00 2.69
413 445 7.147846 CCAATCAAAATCTACCAACTGCCTAAT 60.148 37.037 0.00 0.00 0.00 1.73
414 446 7.573968 ATCAAAATCTACCAACTGCCTAATC 57.426 36.000 0.00 0.00 0.00 1.75
415 447 6.480763 TCAAAATCTACCAACTGCCTAATCA 58.519 36.000 0.00 0.00 0.00 2.57
416 448 6.374333 TCAAAATCTACCAACTGCCTAATCAC 59.626 38.462 0.00 0.00 0.00 3.06
417 449 3.520290 TCTACCAACTGCCTAATCACG 57.480 47.619 0.00 0.00 0.00 4.35
418 450 2.829720 TCTACCAACTGCCTAATCACGT 59.170 45.455 0.00 0.00 0.00 4.49
419 451 4.018490 TCTACCAACTGCCTAATCACGTA 58.982 43.478 0.00 0.00 0.00 3.57
420 452 3.688694 ACCAACTGCCTAATCACGTAA 57.311 42.857 0.00 0.00 0.00 3.18
421 453 3.332034 ACCAACTGCCTAATCACGTAAC 58.668 45.455 0.00 0.00 0.00 2.50
422 454 3.244284 ACCAACTGCCTAATCACGTAACA 60.244 43.478 0.00 0.00 0.00 2.41
423 455 3.938963 CCAACTGCCTAATCACGTAACAT 59.061 43.478 0.00 0.00 0.00 2.71
424 456 4.394920 CCAACTGCCTAATCACGTAACATT 59.605 41.667 0.00 0.00 0.00 2.71
425 457 5.583061 CCAACTGCCTAATCACGTAACATTA 59.417 40.000 0.00 0.00 0.00 1.90
426 458 6.238103 CCAACTGCCTAATCACGTAACATTAG 60.238 42.308 11.54 11.54 33.85 1.73
433 465 8.937634 CCTAATCACGTAACATTAGGTTAACT 57.062 34.615 21.53 0.00 43.59 2.24
434 466 9.374838 CCTAATCACGTAACATTAGGTTAACTT 57.625 33.333 21.53 0.00 43.59 2.66
437 469 9.498176 AATCACGTAACATTAGGTTAACTTCTT 57.502 29.630 5.42 0.00 43.30 2.52
438 470 8.891671 TCACGTAACATTAGGTTAACTTCTTT 57.108 30.769 5.42 0.00 43.30 2.52
439 471 8.981647 TCACGTAACATTAGGTTAACTTCTTTC 58.018 33.333 5.42 0.00 43.30 2.62
440 472 7.948363 CACGTAACATTAGGTTAACTTCTTTCG 59.052 37.037 5.42 3.47 43.30 3.46
441 473 7.653311 ACGTAACATTAGGTTAACTTCTTTCGT 59.347 33.333 5.42 4.02 43.30 3.85
442 474 8.490355 CGTAACATTAGGTTAACTTCTTTCGTT 58.510 33.333 5.42 4.10 43.30 3.85
445 477 8.672823 ACATTAGGTTAACTTCTTTCGTTTCT 57.327 30.769 5.42 0.00 0.00 2.52
446 478 8.771766 ACATTAGGTTAACTTCTTTCGTTTCTC 58.228 33.333 5.42 0.00 0.00 2.87
447 479 5.902051 AGGTTAACTTCTTTCGTTTCTCG 57.098 39.130 5.42 0.00 41.41 4.04
448 480 4.210746 AGGTTAACTTCTTTCGTTTCTCGC 59.789 41.667 5.42 0.00 39.67 5.03
449 481 4.452447 GTTAACTTCTTTCGTTTCTCGCC 58.548 43.478 0.00 0.00 39.67 5.54
450 482 2.234300 ACTTCTTTCGTTTCTCGCCA 57.766 45.000 0.00 0.00 39.67 5.69
451 483 2.557317 ACTTCTTTCGTTTCTCGCCAA 58.443 42.857 0.00 0.00 39.67 4.52
452 484 2.940410 ACTTCTTTCGTTTCTCGCCAAA 59.060 40.909 0.00 0.00 39.67 3.28
453 485 3.375922 ACTTCTTTCGTTTCTCGCCAAAA 59.624 39.130 0.00 0.00 39.67 2.44
454 486 4.142556 ACTTCTTTCGTTTCTCGCCAAAAA 60.143 37.500 0.00 0.00 39.67 1.94
483 515 9.939802 AAATTCTTTCGTAAGTGTAGGATTACT 57.060 29.630 1.51 0.00 39.48 2.24
484 516 9.583765 AATTCTTTCGTAAGTGTAGGATTACTC 57.416 33.333 1.51 0.00 39.48 2.59
485 517 7.692460 TCTTTCGTAAGTGTAGGATTACTCA 57.308 36.000 1.51 0.00 39.48 3.41
486 518 8.114331 TCTTTCGTAAGTGTAGGATTACTCAA 57.886 34.615 1.51 0.00 39.48 3.02
487 519 8.579006 TCTTTCGTAAGTGTAGGATTACTCAAA 58.421 33.333 1.51 0.00 39.48 2.69
488 520 8.524870 TTTCGTAAGTGTAGGATTACTCAAAC 57.475 34.615 0.00 0.00 39.48 2.93
489 521 7.218228 TCGTAAGTGTAGGATTACTCAAACA 57.782 36.000 0.00 0.00 39.48 2.83
490 522 7.660112 TCGTAAGTGTAGGATTACTCAAACAA 58.340 34.615 0.00 0.00 39.48 2.83
491 523 7.596248 TCGTAAGTGTAGGATTACTCAAACAAC 59.404 37.037 0.00 0.00 39.48 3.32
492 524 6.780706 AAGTGTAGGATTACTCAAACAACG 57.219 37.500 0.00 0.00 0.00 4.10
493 525 4.689345 AGTGTAGGATTACTCAAACAACGC 59.311 41.667 0.00 0.00 0.00 4.84
494 526 4.689345 GTGTAGGATTACTCAAACAACGCT 59.311 41.667 0.00 0.00 0.00 5.07
495 527 4.688879 TGTAGGATTACTCAAACAACGCTG 59.311 41.667 0.00 0.00 0.00 5.18
496 528 2.484264 AGGATTACTCAAACAACGCTGC 59.516 45.455 0.00 0.00 0.00 5.25
497 529 2.484264 GGATTACTCAAACAACGCTGCT 59.516 45.455 0.00 0.00 0.00 4.24
498 530 3.682858 GGATTACTCAAACAACGCTGCTA 59.317 43.478 0.00 0.00 0.00 3.49
499 531 4.332819 GGATTACTCAAACAACGCTGCTAT 59.667 41.667 0.00 0.00 0.00 2.97
500 532 5.522460 GGATTACTCAAACAACGCTGCTATA 59.478 40.000 0.00 0.00 0.00 1.31
501 533 5.773239 TTACTCAAACAACGCTGCTATAC 57.227 39.130 0.00 0.00 0.00 1.47
502 534 3.659786 ACTCAAACAACGCTGCTATACA 58.340 40.909 0.00 0.00 0.00 2.29
503 535 3.432252 ACTCAAACAACGCTGCTATACAC 59.568 43.478 0.00 0.00 0.00 2.90
504 536 3.394719 TCAAACAACGCTGCTATACACA 58.605 40.909 0.00 0.00 0.00 3.72
505 537 3.431912 TCAAACAACGCTGCTATACACAG 59.568 43.478 0.00 0.00 38.22 3.66
506 538 2.010145 ACAACGCTGCTATACACAGG 57.990 50.000 0.00 0.00 35.62 4.00
507 539 1.548719 ACAACGCTGCTATACACAGGA 59.451 47.619 0.00 0.00 35.62 3.86
508 540 1.927174 CAACGCTGCTATACACAGGAC 59.073 52.381 0.00 0.00 35.62 3.85
509 541 1.182667 ACGCTGCTATACACAGGACA 58.817 50.000 0.00 0.00 35.62 4.02
510 542 1.135083 ACGCTGCTATACACAGGACAC 60.135 52.381 0.00 0.00 35.62 3.67
511 543 1.135139 CGCTGCTATACACAGGACACT 59.865 52.381 0.00 0.00 35.62 3.55
512 544 2.796383 CGCTGCTATACACAGGACACTC 60.796 54.545 0.00 0.00 35.62 3.51
513 545 2.166459 GCTGCTATACACAGGACACTCA 59.834 50.000 0.00 0.00 35.62 3.41
514 546 3.368427 GCTGCTATACACAGGACACTCAA 60.368 47.826 0.00 0.00 35.62 3.02
515 547 4.681781 GCTGCTATACACAGGACACTCAAT 60.682 45.833 0.00 0.00 35.62 2.57
516 548 4.758688 TGCTATACACAGGACACTCAATG 58.241 43.478 0.00 0.00 0.00 2.82
517 549 3.557595 GCTATACACAGGACACTCAATGC 59.442 47.826 0.00 0.00 0.00 3.56
518 550 3.701205 ATACACAGGACACTCAATGCA 57.299 42.857 0.00 0.00 0.00 3.96
519 551 1.597742 ACACAGGACACTCAATGCAC 58.402 50.000 0.00 0.00 0.00 4.57
520 552 0.514255 CACAGGACACTCAATGCACG 59.486 55.000 0.00 0.00 0.00 5.34
521 553 0.392706 ACAGGACACTCAATGCACGA 59.607 50.000 0.00 0.00 0.00 4.35
522 554 1.002430 ACAGGACACTCAATGCACGAT 59.998 47.619 0.00 0.00 0.00 3.73
523 555 2.079158 CAGGACACTCAATGCACGATT 58.921 47.619 0.00 0.00 0.00 3.34
524 556 2.485426 CAGGACACTCAATGCACGATTT 59.515 45.455 0.00 0.00 0.00 2.17
525 557 2.485426 AGGACACTCAATGCACGATTTG 59.515 45.455 0.00 0.00 0.00 2.32
526 558 2.226437 GGACACTCAATGCACGATTTGT 59.774 45.455 0.00 0.00 0.00 2.83
536 568 2.420628 CACGATTTGTGCACAATGGT 57.579 45.000 31.48 24.30 42.70 3.55
537 569 2.741612 CACGATTTGTGCACAATGGTT 58.258 42.857 31.48 17.06 42.70 3.67
538 570 2.725723 CACGATTTGTGCACAATGGTTC 59.274 45.455 31.48 22.35 42.70 3.62
539 571 2.360483 ACGATTTGTGCACAATGGTTCA 59.640 40.909 31.48 16.84 35.55 3.18
540 572 2.725723 CGATTTGTGCACAATGGTTCAC 59.274 45.455 31.48 15.98 40.89 3.18
541 573 3.715495 GATTTGTGCACAATGGTTCACA 58.285 40.909 31.48 15.35 46.87 3.58
544 576 1.612950 TGTGCACAATGGTTCACATCC 59.387 47.619 19.28 0.00 44.38 3.51
545 577 1.612950 GTGCACAATGGTTCACATCCA 59.387 47.619 13.17 0.00 40.33 3.41
546 578 1.887854 TGCACAATGGTTCACATCCAG 59.112 47.619 0.00 0.00 39.40 3.86
547 579 1.403249 GCACAATGGTTCACATCCAGC 60.403 52.381 0.00 0.00 39.40 4.85
548 580 1.203052 CACAATGGTTCACATCCAGCC 59.797 52.381 0.00 0.00 39.40 4.85
549 581 1.203038 ACAATGGTTCACATCCAGCCA 60.203 47.619 0.00 0.00 39.40 4.75
550 582 2.104967 CAATGGTTCACATCCAGCCAT 58.895 47.619 0.00 0.00 39.40 4.40
551 583 2.062971 ATGGTTCACATCCAGCCATC 57.937 50.000 0.00 0.00 38.42 3.51
552 584 0.392863 TGGTTCACATCCAGCCATCG 60.393 55.000 0.00 0.00 0.00 3.84
553 585 0.107703 GGTTCACATCCAGCCATCGA 60.108 55.000 0.00 0.00 0.00 3.59
554 586 1.678728 GGTTCACATCCAGCCATCGAA 60.679 52.381 0.00 0.00 0.00 3.71
555 587 2.292267 GTTCACATCCAGCCATCGAAT 58.708 47.619 0.00 0.00 0.00 3.34
556 588 2.245159 TCACATCCAGCCATCGAATC 57.755 50.000 0.00 0.00 0.00 2.52
557 589 1.485895 TCACATCCAGCCATCGAATCA 59.514 47.619 0.00 0.00 0.00 2.57
558 590 2.093021 TCACATCCAGCCATCGAATCAA 60.093 45.455 0.00 0.00 0.00 2.57
559 591 2.289820 CACATCCAGCCATCGAATCAAG 59.710 50.000 0.00 0.00 0.00 3.02
560 592 1.878088 CATCCAGCCATCGAATCAAGG 59.122 52.381 0.00 0.00 0.00 3.61
561 593 1.203237 TCCAGCCATCGAATCAAGGA 58.797 50.000 0.00 0.00 0.00 3.36
562 594 1.559219 TCCAGCCATCGAATCAAGGAA 59.441 47.619 0.00 0.00 0.00 3.36
563 595 1.672881 CCAGCCATCGAATCAAGGAAC 59.327 52.381 0.00 0.00 0.00 3.62
564 596 1.672881 CAGCCATCGAATCAAGGAACC 59.327 52.381 0.00 0.00 0.00 3.62
565 597 1.281867 AGCCATCGAATCAAGGAACCA 59.718 47.619 0.00 0.00 0.00 3.67
566 598 2.091541 GCCATCGAATCAAGGAACCAA 58.908 47.619 0.00 0.00 0.00 3.67
567 599 2.098117 GCCATCGAATCAAGGAACCAAG 59.902 50.000 0.00 0.00 0.00 3.61
568 600 3.347216 CCATCGAATCAAGGAACCAAGT 58.653 45.455 0.00 0.00 0.00 3.16
569 601 3.127548 CCATCGAATCAAGGAACCAAGTG 59.872 47.826 0.00 0.00 0.00 3.16
570 602 2.151202 TCGAATCAAGGAACCAAGTGC 58.849 47.619 0.00 0.00 0.00 4.40
571 603 1.879380 CGAATCAAGGAACCAAGTGCA 59.121 47.619 0.00 0.00 0.00 4.57
572 604 2.489329 CGAATCAAGGAACCAAGTGCAT 59.511 45.455 0.00 0.00 0.00 3.96
573 605 3.426695 CGAATCAAGGAACCAAGTGCATC 60.427 47.826 0.00 0.00 0.00 3.91
574 606 2.655090 TCAAGGAACCAAGTGCATCA 57.345 45.000 0.00 0.00 0.00 3.07
575 607 2.229792 TCAAGGAACCAAGTGCATCAC 58.770 47.619 0.00 0.00 34.10 3.06
576 608 1.955778 CAAGGAACCAAGTGCATCACA 59.044 47.619 0.00 0.00 36.74 3.58
577 609 2.559668 CAAGGAACCAAGTGCATCACAT 59.440 45.455 0.00 0.00 36.74 3.21
578 610 2.440409 AGGAACCAAGTGCATCACATC 58.560 47.619 0.00 0.00 36.74 3.06
579 611 1.474077 GGAACCAAGTGCATCACATCC 59.526 52.381 0.00 0.00 36.74 3.51
580 612 2.161855 GAACCAAGTGCATCACATCCA 58.838 47.619 0.00 0.00 36.74 3.41
581 613 2.519771 ACCAAGTGCATCACATCCAT 57.480 45.000 0.00 0.00 36.74 3.41
582 614 2.372264 ACCAAGTGCATCACATCCATC 58.628 47.619 0.00 0.00 36.74 3.51
583 615 2.291089 ACCAAGTGCATCACATCCATCA 60.291 45.455 0.00 0.00 36.74 3.07
584 616 2.357952 CCAAGTGCATCACATCCATCAG 59.642 50.000 0.00 0.00 36.74 2.90
585 617 3.275999 CAAGTGCATCACATCCATCAGA 58.724 45.455 0.00 0.00 36.74 3.27
586 618 3.859061 AGTGCATCACATCCATCAGAT 57.141 42.857 0.00 0.00 36.74 2.90
599 631 4.123497 CCATCAGATGGTTAGTCGTTCA 57.877 45.455 20.30 0.00 45.54 3.18
600 632 4.697514 CCATCAGATGGTTAGTCGTTCAT 58.302 43.478 20.30 0.00 45.54 2.57
601 633 4.509230 CCATCAGATGGTTAGTCGTTCATG 59.491 45.833 20.30 0.00 45.54 3.07
602 634 3.521560 TCAGATGGTTAGTCGTTCATGC 58.478 45.455 0.00 0.00 0.00 4.06
603 635 3.056179 TCAGATGGTTAGTCGTTCATGCA 60.056 43.478 0.00 0.00 0.00 3.96
604 636 3.873361 CAGATGGTTAGTCGTTCATGCAT 59.127 43.478 0.00 0.00 0.00 3.96
605 637 4.025396 CAGATGGTTAGTCGTTCATGCATC 60.025 45.833 0.00 0.00 0.00 3.91
606 638 2.267426 TGGTTAGTCGTTCATGCATCG 58.733 47.619 0.00 0.00 0.00 3.84
607 639 2.268298 GGTTAGTCGTTCATGCATCGT 58.732 47.619 0.00 0.00 0.00 3.73
608 640 2.029244 GGTTAGTCGTTCATGCATCGTG 59.971 50.000 0.00 0.00 0.00 4.35
609 641 1.277326 TAGTCGTTCATGCATCGTGC 58.723 50.000 0.00 3.44 45.29 5.34
618 650 2.751436 GCATCGTGCATGGTGGGT 60.751 61.111 20.53 0.00 44.26 4.51
619 651 2.764314 GCATCGTGCATGGTGGGTC 61.764 63.158 20.53 0.38 44.26 4.46
620 652 2.125147 ATCGTGCATGGTGGGTCG 60.125 61.111 5.98 0.00 0.00 4.79
621 653 3.680620 ATCGTGCATGGTGGGTCGG 62.681 63.158 5.98 0.00 0.00 4.79
623 655 4.722700 GTGCATGGTGGGTCGGCT 62.723 66.667 0.00 0.00 0.00 5.52
624 656 4.720902 TGCATGGTGGGTCGGCTG 62.721 66.667 0.00 0.00 0.00 4.85
625 657 4.722700 GCATGGTGGGTCGGCTGT 62.723 66.667 0.00 0.00 0.00 4.40
626 658 2.747460 CATGGTGGGTCGGCTGTG 60.747 66.667 0.00 0.00 0.00 3.66
627 659 2.927856 ATGGTGGGTCGGCTGTGA 60.928 61.111 0.00 0.00 0.00 3.58
628 660 2.525124 ATGGTGGGTCGGCTGTGAA 61.525 57.895 0.00 0.00 0.00 3.18
629 661 2.358737 GGTGGGTCGGCTGTGAAG 60.359 66.667 0.00 0.00 0.00 3.02
630 662 3.050275 GTGGGTCGGCTGTGAAGC 61.050 66.667 0.00 0.00 0.00 3.86
631 663 3.555324 TGGGTCGGCTGTGAAGCA 61.555 61.111 0.00 0.00 36.33 3.91
633 665 2.031163 GGTCGGCTGTGAAGCAGT 59.969 61.111 0.00 0.00 46.64 4.40
634 666 1.598130 GGTCGGCTGTGAAGCAGTT 60.598 57.895 0.00 0.00 46.64 3.16
635 667 1.166531 GGTCGGCTGTGAAGCAGTTT 61.167 55.000 0.00 0.00 46.64 2.66
636 668 0.235926 GTCGGCTGTGAAGCAGTTTC 59.764 55.000 0.00 0.00 46.64 2.78
637 669 1.205064 CGGCTGTGAAGCAGTTTCG 59.795 57.895 0.00 0.00 46.64 3.46
638 670 1.498865 CGGCTGTGAAGCAGTTTCGT 61.499 55.000 0.00 0.00 46.64 3.85
639 671 0.663153 GGCTGTGAAGCAGTTTCGTT 59.337 50.000 0.00 0.00 46.64 3.85
640 672 1.871039 GGCTGTGAAGCAGTTTCGTTA 59.129 47.619 0.00 0.00 46.64 3.18
641 673 2.349532 GGCTGTGAAGCAGTTTCGTTAC 60.350 50.000 0.00 0.00 46.64 2.50
642 674 2.544267 GCTGTGAAGCAGTTTCGTTACT 59.456 45.455 0.00 0.00 46.64 2.24
643 675 3.363084 GCTGTGAAGCAGTTTCGTTACTC 60.363 47.826 0.00 0.00 46.64 2.59
644 676 3.787785 TGTGAAGCAGTTTCGTTACTCA 58.212 40.909 0.00 0.00 38.71 3.41
645 677 4.185394 TGTGAAGCAGTTTCGTTACTCAA 58.815 39.130 0.00 0.00 38.71 3.02
646 678 4.632251 TGTGAAGCAGTTTCGTTACTCAAA 59.368 37.500 0.00 0.00 38.71 2.69
647 679 5.295787 TGTGAAGCAGTTTCGTTACTCAAAT 59.704 36.000 0.00 0.00 38.71 2.32
648 680 6.480651 TGTGAAGCAGTTTCGTTACTCAAATA 59.519 34.615 0.00 0.00 38.71 1.40
649 681 7.011576 TGTGAAGCAGTTTCGTTACTCAAATAA 59.988 33.333 0.00 0.00 38.71 1.40
650 682 7.320560 GTGAAGCAGTTTCGTTACTCAAATAAC 59.679 37.037 0.00 0.00 38.71 1.89
651 683 6.854496 AGCAGTTTCGTTACTCAAATAACA 57.146 33.333 0.00 0.00 35.18 2.41
652 684 7.254227 AGCAGTTTCGTTACTCAAATAACAA 57.746 32.000 0.00 0.00 35.18 2.83
653 685 7.699566 AGCAGTTTCGTTACTCAAATAACAAA 58.300 30.769 0.00 0.00 35.18 2.83
654 686 8.349983 AGCAGTTTCGTTACTCAAATAACAAAT 58.650 29.630 0.00 0.00 35.18 2.32
722 754 6.044404 GGATCCCTCAAGATATAAACCAAGGA 59.956 42.308 0.00 0.00 0.00 3.36
724 756 5.369699 TCCCTCAAGATATAAACCAAGGAGG 59.630 44.000 0.00 0.00 45.67 4.30
764 827 1.067985 AGAGCCGCAGTGATATCATCG 60.068 52.381 9.02 12.32 0.00 3.84
792 855 4.329545 TGGCGACAAGGGTCCTGC 62.330 66.667 0.00 0.00 41.13 4.85
878 1607 5.090845 AGATTATTTCTCTAGGGAGGGCTC 58.909 45.833 0.00 0.00 39.86 4.70
879 1608 2.877154 ATTTCTCTAGGGAGGGCTCA 57.123 50.000 0.00 0.00 39.86 4.26
880 1609 2.166907 TTTCTCTAGGGAGGGCTCAG 57.833 55.000 0.00 0.00 39.86 3.35
881 1610 0.263172 TTCTCTAGGGAGGGCTCAGG 59.737 60.000 0.00 0.00 39.86 3.86
882 1611 1.152355 CTCTAGGGAGGGCTCAGGG 60.152 68.421 0.00 0.00 36.03 4.45
883 1612 2.846754 CTAGGGAGGGCTCAGGGC 60.847 72.222 0.00 0.00 40.90 5.19
884 1613 3.368501 TAGGGAGGGCTCAGGGCT 61.369 66.667 0.00 0.00 41.46 5.19
931 1660 6.127026 GGAGTGGTTAGATAGATTGGTTCACT 60.127 42.308 0.00 0.00 34.91 3.41
1002 1731 1.006998 CCCCAATCATCACTTTCCCCA 59.993 52.381 0.00 0.00 0.00 4.96
1003 1732 2.102578 CCCAATCATCACTTTCCCCAC 58.897 52.381 0.00 0.00 0.00 4.61
1004 1733 2.557229 CCCAATCATCACTTTCCCCACA 60.557 50.000 0.00 0.00 0.00 4.17
1021 1750 0.525761 ACACACACACAAAGGCACAC 59.474 50.000 0.00 0.00 0.00 3.82
1022 1751 0.525311 CACACACACAAAGGCACACA 59.475 50.000 0.00 0.00 0.00 3.72
1023 1752 0.810648 ACACACACAAAGGCACACAG 59.189 50.000 0.00 0.00 0.00 3.66
1024 1753 0.810648 CACACACAAAGGCACACAGT 59.189 50.000 0.00 0.00 0.00 3.55
1025 1754 2.013400 CACACACAAAGGCACACAGTA 58.987 47.619 0.00 0.00 0.00 2.74
1026 1755 2.032054 CACACACAAAGGCACACAGTAG 59.968 50.000 0.00 0.00 0.00 2.57
1027 1756 2.093181 ACACACAAAGGCACACAGTAGA 60.093 45.455 0.00 0.00 0.00 2.59
1028 1757 2.545526 CACACAAAGGCACACAGTAGAG 59.454 50.000 0.00 0.00 0.00 2.43
1029 1758 2.146342 CACAAAGGCACACAGTAGAGG 58.854 52.381 0.00 0.00 0.00 3.69
1030 1759 2.047061 ACAAAGGCACACAGTAGAGGA 58.953 47.619 0.00 0.00 0.00 3.71
1031 1760 2.037772 ACAAAGGCACACAGTAGAGGAG 59.962 50.000 0.00 0.00 0.00 3.69
1032 1761 0.610687 AAGGCACACAGTAGAGGAGC 59.389 55.000 0.00 0.00 0.00 4.70
1075 1804 0.459934 CAGGCTCAGCTTCTTCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
1140 1869 2.275318 CTCGCCTCTCCAACTCAATTC 58.725 52.381 0.00 0.00 0.00 2.17
1141 1870 1.066143 TCGCCTCTCCAACTCAATTCC 60.066 52.381 0.00 0.00 0.00 3.01
1142 1871 1.756430 GCCTCTCCAACTCAATTCCC 58.244 55.000 0.00 0.00 0.00 3.97
1268 1999 5.675684 ATTGGTTTGGGTGATTGGTATTC 57.324 39.130 0.00 0.00 0.00 1.75
1731 2463 1.662446 CCGCGTGTACGTCTTTGGT 60.662 57.895 4.92 0.00 42.22 3.67
2145 2877 4.530857 CTGGATGACGCCGGGTCC 62.531 72.222 17.20 6.51 45.46 4.46
2339 3071 1.068748 GCTCTGTGTGCAATTGGAGTG 60.069 52.381 7.72 0.00 0.00 3.51
2343 3075 1.039856 GTGTGCAATTGGAGTGGGTT 58.960 50.000 7.72 0.00 0.00 4.11
2346 3078 0.392336 TGCAATTGGAGTGGGTTTGC 59.608 50.000 7.72 0.00 42.23 3.68
2361 3093 1.436195 TTTGCGACGAACTTGCTGCT 61.436 50.000 0.00 0.00 0.00 4.24
2362 3094 1.436195 TTGCGACGAACTTGCTGCTT 61.436 50.000 0.00 0.00 0.00 3.91
2363 3095 1.279840 GCGACGAACTTGCTGCTTT 59.720 52.632 0.00 0.00 0.00 3.51
2364 3096 0.993746 GCGACGAACTTGCTGCTTTG 60.994 55.000 0.00 0.00 0.00 2.77
2365 3097 0.304705 CGACGAACTTGCTGCTTTGT 59.695 50.000 0.00 0.00 0.00 2.83
2366 3098 1.268032 CGACGAACTTGCTGCTTTGTT 60.268 47.619 0.00 3.28 0.00 2.83
2367 3099 2.033236 CGACGAACTTGCTGCTTTGTTA 60.033 45.455 0.00 0.00 0.00 2.41
2368 3100 3.545228 CGACGAACTTGCTGCTTTGTTAA 60.545 43.478 0.00 0.00 0.00 2.01
2369 3101 4.537015 GACGAACTTGCTGCTTTGTTAAT 58.463 39.130 0.00 0.00 0.00 1.40
2370 3102 4.290155 ACGAACTTGCTGCTTTGTTAATG 58.710 39.130 0.00 0.87 0.00 1.90
2371 3103 4.202010 ACGAACTTGCTGCTTTGTTAATGT 60.202 37.500 0.00 1.41 0.00 2.71
2566 3325 1.300971 TTTGCGCCTCTGTCTGCATC 61.301 55.000 4.18 0.00 37.17 3.91
2589 3348 1.361993 GTTCGTGGTTGGCATGCAA 59.638 52.632 21.36 4.92 0.00 4.08
2623 3382 1.277495 GGCAGCAATCGCACAAACAC 61.277 55.000 0.00 0.00 42.27 3.32
2625 3384 0.316937 CAGCAATCGCACAAACACGT 60.317 50.000 0.00 0.00 42.27 4.49
2643 3402 1.595794 CGTCCACTTAACACACACACC 59.404 52.381 0.00 0.00 0.00 4.16
2677 3439 3.403558 GCCCCACTCACCCTCTCC 61.404 72.222 0.00 0.00 0.00 3.71
2716 3478 1.291877 ACGCGCAGTGGTTCTTCATC 61.292 55.000 5.73 0.00 45.78 2.92
2721 3483 1.935300 GCAGTGGTTCTTCATCGTCGT 60.935 52.381 0.00 0.00 0.00 4.34
2788 3550 4.539881 GCGCGACGTCCTCTCTCC 62.540 72.222 12.10 0.00 0.00 3.71
2790 3552 3.519930 GCGACGTCCTCTCTCCCC 61.520 72.222 10.58 0.00 0.00 4.81
2791 3553 3.203412 CGACGTCCTCTCTCCCCG 61.203 72.222 10.58 0.00 0.00 5.73
2792 3554 3.519930 GACGTCCTCTCTCCCCGC 61.520 72.222 3.51 0.00 0.00 6.13
2795 3557 2.444895 GTCCTCTCTCCCCGCCAT 60.445 66.667 0.00 0.00 0.00 4.40
3225 3988 2.654877 CCAGGCGTTGTCGTACCT 59.345 61.111 0.00 0.00 39.49 3.08
3240 4003 2.651701 GTACCTATCATGTGCTCGTCG 58.348 52.381 0.00 0.00 0.00 5.12
3241 4004 0.249073 ACCTATCATGTGCTCGTCGC 60.249 55.000 0.00 0.00 39.77 5.19
3268 4031 0.526662 AGGGTTCTAAGTGCTCGTCG 59.473 55.000 0.00 0.00 0.00 5.12
3290 4053 1.644509 ATCAGTGTAGCAGGTGGTGA 58.355 50.000 0.00 0.00 0.00 4.02
3353 4116 1.035923 TTTGGCGATTTTGGACTGCA 58.964 45.000 0.00 0.00 0.00 4.41
3370 4133 2.947652 CTGCATGAGTTGGTTCCCTATG 59.052 50.000 0.00 0.00 0.00 2.23
3404 4167 2.290323 CCCAGTTTGAGTCTAGGGGTTG 60.290 54.545 0.00 0.00 32.59 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.771749 AGCATCTCTAATCCATCTTTTTCCAG 59.228 38.462 0.00 0.00 0.00 3.86
15 17 6.714356 GCCTAAAGCATCTCTAATCCATCTTT 59.286 38.462 0.00 0.00 42.97 2.52
18 20 4.940654 GGCCTAAAGCATCTCTAATCCATC 59.059 45.833 0.00 0.00 46.50 3.51
22 24 5.312079 ACATGGCCTAAAGCATCTCTAATC 58.688 41.667 3.32 0.00 46.50 1.75
29 31 1.268743 GCGAACATGGCCTAAAGCATC 60.269 52.381 3.32 0.00 46.50 3.91
34 36 2.509569 TGAAAGCGAACATGGCCTAAA 58.490 42.857 3.32 0.00 0.00 1.85
42 44 3.012518 CAGAAGGGATGAAAGCGAACAT 58.987 45.455 0.00 0.00 0.00 2.71
63 65 6.001460 TCTCTCGATCTCTCTAATCCCTTTC 58.999 44.000 0.00 0.00 0.00 2.62
158 160 3.054655 GGGACCAAACACTCTAATGCCTA 60.055 47.826 0.00 0.00 0.00 3.93
163 165 4.351111 ACTCAAGGGACCAAACACTCTAAT 59.649 41.667 0.00 0.00 0.00 1.73
184 187 7.415653 GGTTGTTAGTAGGCTATTGTACGTACT 60.416 40.741 25.12 9.79 39.86 2.73
195 200 2.236489 ACGGGGTTGTTAGTAGGCTA 57.764 50.000 0.00 0.00 0.00 3.93
203 208 2.660670 ACATGGAAACGGGGTTGTTA 57.339 45.000 0.00 0.00 0.00 2.41
212 217 4.097714 CCATTCGATCAAACATGGAAACG 58.902 43.478 5.76 0.00 38.88 3.60
213 218 5.123820 TCTCCATTCGATCAAACATGGAAAC 59.876 40.000 13.72 0.00 43.70 2.78
250 282 6.976934 AGGATTATTGTTGTTGGTTTGTCT 57.023 33.333 0.00 0.00 0.00 3.41
257 289 6.882140 TGTAGGTGTAGGATTATTGTTGTTGG 59.118 38.462 0.00 0.00 0.00 3.77
258 290 7.915293 TGTAGGTGTAGGATTATTGTTGTTG 57.085 36.000 0.00 0.00 0.00 3.33
264 296 7.565680 AGTCCTTTGTAGGTGTAGGATTATTG 58.434 38.462 0.00 0.00 42.60 1.90
265 297 7.750947 AGTCCTTTGTAGGTGTAGGATTATT 57.249 36.000 0.00 0.00 42.60 1.40
266 298 7.014038 CGTAGTCCTTTGTAGGTGTAGGATTAT 59.986 40.741 0.00 0.00 42.60 1.28
267 299 6.319658 CGTAGTCCTTTGTAGGTGTAGGATTA 59.680 42.308 0.00 0.00 42.60 1.75
268 300 5.126707 CGTAGTCCTTTGTAGGTGTAGGATT 59.873 44.000 0.00 0.00 42.60 3.01
269 301 4.643784 CGTAGTCCTTTGTAGGTGTAGGAT 59.356 45.833 0.00 0.00 42.60 3.24
270 302 4.012374 CGTAGTCCTTTGTAGGTGTAGGA 58.988 47.826 0.00 0.00 42.60 2.94
271 303 4.012374 TCGTAGTCCTTTGTAGGTGTAGG 58.988 47.826 0.00 0.00 42.60 3.18
272 304 5.413833 TCTTCGTAGTCCTTTGTAGGTGTAG 59.586 44.000 0.00 0.00 42.60 2.74
273 305 5.316167 TCTTCGTAGTCCTTTGTAGGTGTA 58.684 41.667 0.00 0.00 42.60 2.90
274 306 4.147321 TCTTCGTAGTCCTTTGTAGGTGT 58.853 43.478 0.00 0.00 42.60 4.16
275 307 4.380655 CCTCTTCGTAGTCCTTTGTAGGTG 60.381 50.000 0.00 0.00 42.60 4.00
276 308 3.762823 CCTCTTCGTAGTCCTTTGTAGGT 59.237 47.826 0.00 0.00 42.60 3.08
277 309 3.762823 ACCTCTTCGTAGTCCTTTGTAGG 59.237 47.826 0.00 0.00 43.46 3.18
278 310 5.388408 AACCTCTTCGTAGTCCTTTGTAG 57.612 43.478 0.00 0.00 0.00 2.74
279 311 5.106555 CGTAACCTCTTCGTAGTCCTTTGTA 60.107 44.000 0.00 0.00 0.00 2.41
280 312 4.320788 CGTAACCTCTTCGTAGTCCTTTGT 60.321 45.833 0.00 0.00 0.00 2.83
281 313 4.164294 CGTAACCTCTTCGTAGTCCTTTG 58.836 47.826 0.00 0.00 0.00 2.77
282 314 3.823304 ACGTAACCTCTTCGTAGTCCTTT 59.177 43.478 0.00 0.00 36.05 3.11
283 315 3.416156 ACGTAACCTCTTCGTAGTCCTT 58.584 45.455 0.00 0.00 36.05 3.36
284 316 3.064900 ACGTAACCTCTTCGTAGTCCT 57.935 47.619 0.00 0.00 36.05 3.85
285 317 4.946784 TTACGTAACCTCTTCGTAGTCC 57.053 45.455 3.29 0.00 40.26 3.85
298 330 4.277515 AGGGAAGGAAGGTTTACGTAAC 57.722 45.455 7.70 3.57 35.94 2.50
299 331 6.625532 ATTAGGGAAGGAAGGTTTACGTAA 57.374 37.500 3.29 3.29 0.00 3.18
300 332 6.441604 AGAATTAGGGAAGGAAGGTTTACGTA 59.558 38.462 0.00 0.00 0.00 3.57
301 333 5.250082 AGAATTAGGGAAGGAAGGTTTACGT 59.750 40.000 0.00 0.00 0.00 3.57
302 334 5.742063 AGAATTAGGGAAGGAAGGTTTACG 58.258 41.667 0.00 0.00 0.00 3.18
303 335 6.824196 CAGAGAATTAGGGAAGGAAGGTTTAC 59.176 42.308 0.00 0.00 0.00 2.01
304 336 6.578439 GCAGAGAATTAGGGAAGGAAGGTTTA 60.578 42.308 0.00 0.00 0.00 2.01
305 337 5.808050 GCAGAGAATTAGGGAAGGAAGGTTT 60.808 44.000 0.00 0.00 0.00 3.27
306 338 4.324641 GCAGAGAATTAGGGAAGGAAGGTT 60.325 45.833 0.00 0.00 0.00 3.50
307 339 3.201045 GCAGAGAATTAGGGAAGGAAGGT 59.799 47.826 0.00 0.00 0.00 3.50
308 340 3.434310 GGCAGAGAATTAGGGAAGGAAGG 60.434 52.174 0.00 0.00 0.00 3.46
309 341 3.434310 GGGCAGAGAATTAGGGAAGGAAG 60.434 52.174 0.00 0.00 0.00 3.46
310 342 2.509964 GGGCAGAGAATTAGGGAAGGAA 59.490 50.000 0.00 0.00 0.00 3.36
311 343 2.127708 GGGCAGAGAATTAGGGAAGGA 58.872 52.381 0.00 0.00 0.00 3.36
312 344 1.143889 GGGGCAGAGAATTAGGGAAGG 59.856 57.143 0.00 0.00 0.00 3.46
313 345 1.143889 GGGGGCAGAGAATTAGGGAAG 59.856 57.143 0.00 0.00 0.00 3.46
314 346 1.222567 GGGGGCAGAGAATTAGGGAA 58.777 55.000 0.00 0.00 0.00 3.97
315 347 2.945718 GGGGGCAGAGAATTAGGGA 58.054 57.895 0.00 0.00 0.00 4.20
337 369 3.692370 GAAATCGTCGGGGGTGGGG 62.692 68.421 0.00 0.00 0.00 4.96
338 370 2.124860 GAAATCGTCGGGGGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
339 371 2.124860 GGAAATCGTCGGGGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
340 372 1.449601 CTGGAAATCGTCGGGGGTG 60.450 63.158 0.00 0.00 0.00 4.61
341 373 1.916777 ACTGGAAATCGTCGGGGGT 60.917 57.895 0.00 0.00 0.00 4.95
342 374 1.449601 CACTGGAAATCGTCGGGGG 60.450 63.158 0.00 0.00 0.00 5.40
343 375 1.449601 CCACTGGAAATCGTCGGGG 60.450 63.158 0.00 0.00 0.00 5.73
344 376 1.449601 CCCACTGGAAATCGTCGGG 60.450 63.158 0.00 0.00 0.00 5.14
345 377 1.449601 CCCCACTGGAAATCGTCGG 60.450 63.158 0.00 0.00 35.39 4.79
346 378 1.449601 CCCCCACTGGAAATCGTCG 60.450 63.158 0.00 0.00 35.39 5.12
347 379 0.676782 CACCCCCACTGGAAATCGTC 60.677 60.000 0.00 0.00 35.39 4.20
348 380 1.378762 CACCCCCACTGGAAATCGT 59.621 57.895 0.00 0.00 35.39 3.73
349 381 1.378514 CCACCCCCACTGGAAATCG 60.379 63.158 0.00 0.00 35.39 3.34
350 382 1.000359 CCCACCCCCACTGGAAATC 60.000 63.158 0.00 0.00 35.39 2.17
351 383 3.190349 CCCACCCCCACTGGAAAT 58.810 61.111 0.00 0.00 35.39 2.17
352 384 3.909651 GCCCACCCCCACTGGAAA 61.910 66.667 0.00 0.00 35.39 3.13
368 400 4.858680 GTTAGGCAGAGGCGGGGC 62.859 72.222 0.00 0.00 42.47 5.80
369 401 3.399181 TGTTAGGCAGAGGCGGGG 61.399 66.667 0.00 0.00 42.47 5.73
370 402 2.125106 GTGTTAGGCAGAGGCGGG 60.125 66.667 0.00 0.00 42.47 6.13
371 403 2.125106 GGTGTTAGGCAGAGGCGG 60.125 66.667 0.00 0.00 42.47 6.13
372 404 0.392998 ATTGGTGTTAGGCAGAGGCG 60.393 55.000 0.00 0.00 42.47 5.52
373 405 1.340017 TGATTGGTGTTAGGCAGAGGC 60.340 52.381 0.00 0.00 40.13 4.70
374 406 2.787473 TGATTGGTGTTAGGCAGAGG 57.213 50.000 0.00 0.00 0.00 3.69
375 407 5.416952 AGATTTTGATTGGTGTTAGGCAGAG 59.583 40.000 0.00 0.00 0.00 3.35
376 408 5.324409 AGATTTTGATTGGTGTTAGGCAGA 58.676 37.500 0.00 0.00 0.00 4.26
377 409 5.649782 AGATTTTGATTGGTGTTAGGCAG 57.350 39.130 0.00 0.00 0.00 4.85
378 410 5.417580 GGTAGATTTTGATTGGTGTTAGGCA 59.582 40.000 0.00 0.00 0.00 4.75
379 411 5.417580 TGGTAGATTTTGATTGGTGTTAGGC 59.582 40.000 0.00 0.00 0.00 3.93
380 412 7.176690 AGTTGGTAGATTTTGATTGGTGTTAGG 59.823 37.037 0.00 0.00 0.00 2.69
381 413 8.023128 CAGTTGGTAGATTTTGATTGGTGTTAG 58.977 37.037 0.00 0.00 0.00 2.34
382 414 7.523052 GCAGTTGGTAGATTTTGATTGGTGTTA 60.523 37.037 0.00 0.00 0.00 2.41
383 415 6.738453 GCAGTTGGTAGATTTTGATTGGTGTT 60.738 38.462 0.00 0.00 0.00 3.32
384 416 5.278957 GCAGTTGGTAGATTTTGATTGGTGT 60.279 40.000 0.00 0.00 0.00 4.16
385 417 5.163513 GCAGTTGGTAGATTTTGATTGGTG 58.836 41.667 0.00 0.00 0.00 4.17
386 418 4.220602 GGCAGTTGGTAGATTTTGATTGGT 59.779 41.667 0.00 0.00 0.00 3.67
387 419 4.463891 AGGCAGTTGGTAGATTTTGATTGG 59.536 41.667 0.00 0.00 0.00 3.16
388 420 5.649782 AGGCAGTTGGTAGATTTTGATTG 57.350 39.130 0.00 0.00 0.00 2.67
389 421 7.615365 TGATTAGGCAGTTGGTAGATTTTGATT 59.385 33.333 0.00 0.00 0.00 2.57
390 422 7.067494 GTGATTAGGCAGTTGGTAGATTTTGAT 59.933 37.037 0.00 0.00 0.00 2.57
391 423 6.374333 GTGATTAGGCAGTTGGTAGATTTTGA 59.626 38.462 0.00 0.00 0.00 2.69
392 424 6.555315 GTGATTAGGCAGTTGGTAGATTTTG 58.445 40.000 0.00 0.00 0.00 2.44
393 425 5.354234 CGTGATTAGGCAGTTGGTAGATTTT 59.646 40.000 0.00 0.00 0.00 1.82
394 426 4.876107 CGTGATTAGGCAGTTGGTAGATTT 59.124 41.667 0.00 0.00 0.00 2.17
395 427 4.081087 ACGTGATTAGGCAGTTGGTAGATT 60.081 41.667 0.00 0.00 0.00 2.40
396 428 3.451178 ACGTGATTAGGCAGTTGGTAGAT 59.549 43.478 0.00 0.00 0.00 1.98
397 429 2.829720 ACGTGATTAGGCAGTTGGTAGA 59.170 45.455 0.00 0.00 0.00 2.59
398 430 3.247006 ACGTGATTAGGCAGTTGGTAG 57.753 47.619 0.00 0.00 0.00 3.18
399 431 4.021280 TGTTACGTGATTAGGCAGTTGGTA 60.021 41.667 0.00 0.00 0.00 3.25
400 432 3.244284 TGTTACGTGATTAGGCAGTTGGT 60.244 43.478 0.00 0.00 0.00 3.67
401 433 3.331150 TGTTACGTGATTAGGCAGTTGG 58.669 45.455 0.00 0.00 0.00 3.77
402 434 5.545658 AATGTTACGTGATTAGGCAGTTG 57.454 39.130 0.00 0.00 0.00 3.16
403 435 5.815740 CCTAATGTTACGTGATTAGGCAGTT 59.184 40.000 20.82 1.48 42.58 3.16
404 436 5.357257 CCTAATGTTACGTGATTAGGCAGT 58.643 41.667 20.82 2.65 42.58 4.40
405 437 5.907197 CCTAATGTTACGTGATTAGGCAG 57.093 43.478 20.82 6.88 42.58 4.85
411 443 9.498176 AAGAAGTTAACCTAATGTTACGTGATT 57.502 29.630 0.88 0.00 39.13 2.57
412 444 9.498176 AAAGAAGTTAACCTAATGTTACGTGAT 57.502 29.630 0.88 0.00 39.13 3.06
413 445 8.891671 AAAGAAGTTAACCTAATGTTACGTGA 57.108 30.769 0.88 0.00 39.13 4.35
414 446 7.948363 CGAAAGAAGTTAACCTAATGTTACGTG 59.052 37.037 0.88 0.00 39.13 4.49
415 447 7.653311 ACGAAAGAAGTTAACCTAATGTTACGT 59.347 33.333 0.88 0.00 39.13 3.57
416 448 8.011067 ACGAAAGAAGTTAACCTAATGTTACG 57.989 34.615 0.88 1.24 39.13 3.18
419 451 9.117183 AGAAACGAAAGAAGTTAACCTAATGTT 57.883 29.630 0.88 0.00 41.11 2.71
420 452 8.672823 AGAAACGAAAGAAGTTAACCTAATGT 57.327 30.769 0.88 0.00 0.00 2.71
421 453 7.950496 CGAGAAACGAAAGAAGTTAACCTAATG 59.050 37.037 0.88 0.00 45.77 1.90
422 454 7.359849 GCGAGAAACGAAAGAAGTTAACCTAAT 60.360 37.037 0.88 0.00 45.77 1.73
423 455 6.074142 GCGAGAAACGAAAGAAGTTAACCTAA 60.074 38.462 0.88 0.00 45.77 2.69
424 456 5.403466 GCGAGAAACGAAAGAAGTTAACCTA 59.597 40.000 0.88 0.00 45.77 3.08
425 457 4.210746 GCGAGAAACGAAAGAAGTTAACCT 59.789 41.667 0.88 0.00 45.77 3.50
426 458 4.452447 GCGAGAAACGAAAGAAGTTAACC 58.548 43.478 0.88 0.00 45.77 2.85
427 459 4.025480 TGGCGAGAAACGAAAGAAGTTAAC 60.025 41.667 0.00 0.00 45.77 2.01
428 460 4.121317 TGGCGAGAAACGAAAGAAGTTAA 58.879 39.130 0.00 0.00 45.77 2.01
429 461 3.719924 TGGCGAGAAACGAAAGAAGTTA 58.280 40.909 0.00 0.00 45.77 2.24
430 462 2.557317 TGGCGAGAAACGAAAGAAGTT 58.443 42.857 0.00 0.00 45.77 2.66
431 463 2.234300 TGGCGAGAAACGAAAGAAGT 57.766 45.000 0.00 0.00 45.77 3.01
432 464 3.602390 TTTGGCGAGAAACGAAAGAAG 57.398 42.857 0.00 0.00 45.77 2.85
433 465 4.358494 TTTTTGGCGAGAAACGAAAGAA 57.642 36.364 0.00 0.00 45.77 2.52
457 489 9.939802 AGTAATCCTACACTTACGAAAGAATTT 57.060 29.630 0.00 0.00 43.98 1.82
458 490 9.583765 GAGTAATCCTACACTTACGAAAGAATT 57.416 33.333 0.00 0.00 36.50 2.17
459 491 8.746530 TGAGTAATCCTACACTTACGAAAGAAT 58.253 33.333 0.00 0.00 36.50 2.40
460 492 8.114331 TGAGTAATCCTACACTTACGAAAGAA 57.886 34.615 0.00 0.00 36.50 2.52
461 493 7.692460 TGAGTAATCCTACACTTACGAAAGA 57.308 36.000 0.00 0.00 36.50 2.52
462 494 8.645487 GTTTGAGTAATCCTACACTTACGAAAG 58.355 37.037 0.00 0.00 38.77 2.62
463 495 8.143193 TGTTTGAGTAATCCTACACTTACGAAA 58.857 33.333 0.00 0.00 33.93 3.46
464 496 7.660112 TGTTTGAGTAATCCTACACTTACGAA 58.340 34.615 0.00 0.00 33.93 3.85
465 497 7.218228 TGTTTGAGTAATCCTACACTTACGA 57.782 36.000 0.00 0.00 33.93 3.43
466 498 7.410087 CGTTGTTTGAGTAATCCTACACTTACG 60.410 40.741 0.00 0.00 33.93 3.18
467 499 7.620806 GCGTTGTTTGAGTAATCCTACACTTAC 60.621 40.741 0.00 0.00 0.00 2.34
468 500 6.366877 GCGTTGTTTGAGTAATCCTACACTTA 59.633 38.462 0.00 0.00 0.00 2.24
469 501 5.178809 GCGTTGTTTGAGTAATCCTACACTT 59.821 40.000 0.00 0.00 0.00 3.16
470 502 4.689345 GCGTTGTTTGAGTAATCCTACACT 59.311 41.667 0.00 0.00 0.00 3.55
471 503 4.689345 AGCGTTGTTTGAGTAATCCTACAC 59.311 41.667 0.00 0.00 0.00 2.90
472 504 4.688879 CAGCGTTGTTTGAGTAATCCTACA 59.311 41.667 0.00 0.00 0.00 2.74
473 505 4.435651 GCAGCGTTGTTTGAGTAATCCTAC 60.436 45.833 0.00 0.00 0.00 3.18
474 506 3.682858 GCAGCGTTGTTTGAGTAATCCTA 59.317 43.478 0.00 0.00 0.00 2.94
475 507 2.484264 GCAGCGTTGTTTGAGTAATCCT 59.516 45.455 0.00 0.00 0.00 3.24
476 508 2.484264 AGCAGCGTTGTTTGAGTAATCC 59.516 45.455 0.00 0.00 0.00 3.01
477 509 3.813529 AGCAGCGTTGTTTGAGTAATC 57.186 42.857 0.00 0.00 0.00 1.75
478 510 5.872617 TGTATAGCAGCGTTGTTTGAGTAAT 59.127 36.000 0.00 0.00 0.00 1.89
479 511 5.119588 GTGTATAGCAGCGTTGTTTGAGTAA 59.880 40.000 0.00 0.00 0.00 2.24
480 512 4.624024 GTGTATAGCAGCGTTGTTTGAGTA 59.376 41.667 0.00 0.00 0.00 2.59
481 513 3.432252 GTGTATAGCAGCGTTGTTTGAGT 59.568 43.478 0.00 0.00 0.00 3.41
482 514 3.431912 TGTGTATAGCAGCGTTGTTTGAG 59.568 43.478 0.00 0.00 0.00 3.02
483 515 3.394719 TGTGTATAGCAGCGTTGTTTGA 58.605 40.909 0.00 0.00 0.00 2.69
484 516 3.424829 CCTGTGTATAGCAGCGTTGTTTG 60.425 47.826 0.00 0.00 32.93 2.93
485 517 2.742053 CCTGTGTATAGCAGCGTTGTTT 59.258 45.455 0.00 0.00 32.93 2.83
486 518 2.028476 TCCTGTGTATAGCAGCGTTGTT 60.028 45.455 0.00 0.00 32.93 2.83
487 519 1.548719 TCCTGTGTATAGCAGCGTTGT 59.451 47.619 0.00 0.00 32.93 3.32
488 520 1.927174 GTCCTGTGTATAGCAGCGTTG 59.073 52.381 0.00 0.00 32.93 4.10
489 521 1.548719 TGTCCTGTGTATAGCAGCGTT 59.451 47.619 0.00 0.00 32.93 4.84
490 522 1.135083 GTGTCCTGTGTATAGCAGCGT 60.135 52.381 0.00 0.00 32.93 5.07
491 523 1.135139 AGTGTCCTGTGTATAGCAGCG 59.865 52.381 0.00 0.00 32.93 5.18
492 524 2.166459 TGAGTGTCCTGTGTATAGCAGC 59.834 50.000 0.00 0.00 32.93 5.25
493 525 4.456280 TTGAGTGTCCTGTGTATAGCAG 57.544 45.455 0.00 0.00 0.00 4.24
494 526 4.758688 CATTGAGTGTCCTGTGTATAGCA 58.241 43.478 0.00 0.00 0.00 3.49
495 527 3.557595 GCATTGAGTGTCCTGTGTATAGC 59.442 47.826 0.00 0.00 0.00 2.97
496 528 4.568359 GTGCATTGAGTGTCCTGTGTATAG 59.432 45.833 0.00 0.00 0.00 1.31
497 529 4.503910 GTGCATTGAGTGTCCTGTGTATA 58.496 43.478 0.00 0.00 0.00 1.47
498 530 3.338249 GTGCATTGAGTGTCCTGTGTAT 58.662 45.455 0.00 0.00 0.00 2.29
499 531 2.766313 GTGCATTGAGTGTCCTGTGTA 58.234 47.619 0.00 0.00 0.00 2.90
500 532 1.597742 GTGCATTGAGTGTCCTGTGT 58.402 50.000 0.00 0.00 0.00 3.72
501 533 0.514255 CGTGCATTGAGTGTCCTGTG 59.486 55.000 0.00 0.00 0.00 3.66
502 534 0.392706 TCGTGCATTGAGTGTCCTGT 59.607 50.000 0.00 0.00 0.00 4.00
503 535 1.730501 ATCGTGCATTGAGTGTCCTG 58.269 50.000 0.00 0.00 0.00 3.86
504 536 2.479566 AATCGTGCATTGAGTGTCCT 57.520 45.000 0.00 0.00 0.00 3.85
505 537 2.226437 ACAAATCGTGCATTGAGTGTCC 59.774 45.455 4.82 0.00 0.00 4.02
506 538 3.228749 CACAAATCGTGCATTGAGTGTC 58.771 45.455 4.82 0.00 39.19 3.67
507 539 3.272439 CACAAATCGTGCATTGAGTGT 57.728 42.857 4.82 5.30 39.19 3.55
518 550 2.360483 TGAACCATTGTGCACAAATCGT 59.640 40.909 34.06 25.20 39.55 3.73
519 551 3.010624 TGAACCATTGTGCACAAATCG 57.989 42.857 34.06 24.60 39.55 3.34
526 558 1.887854 CTGGATGTGAACCATTGTGCA 59.112 47.619 0.00 0.00 36.79 4.57
527 559 1.403249 GCTGGATGTGAACCATTGTGC 60.403 52.381 0.00 0.00 36.79 4.57
528 560 1.203052 GGCTGGATGTGAACCATTGTG 59.797 52.381 0.00 0.00 36.79 3.33
529 561 1.203038 TGGCTGGATGTGAACCATTGT 60.203 47.619 0.00 0.00 36.79 2.71
530 562 1.548081 TGGCTGGATGTGAACCATTG 58.452 50.000 0.00 0.00 36.79 2.82
531 563 2.381911 GATGGCTGGATGTGAACCATT 58.618 47.619 0.00 0.00 41.15 3.16
532 564 1.748244 CGATGGCTGGATGTGAACCAT 60.748 52.381 0.00 0.00 43.72 3.55
533 565 0.392863 CGATGGCTGGATGTGAACCA 60.393 55.000 0.00 0.00 35.96 3.67
534 566 0.107703 TCGATGGCTGGATGTGAACC 60.108 55.000 0.00 0.00 0.00 3.62
535 567 1.737838 TTCGATGGCTGGATGTGAAC 58.262 50.000 0.00 0.00 0.00 3.18
536 568 2.093021 TGATTCGATGGCTGGATGTGAA 60.093 45.455 0.00 0.00 0.00 3.18
537 569 1.485895 TGATTCGATGGCTGGATGTGA 59.514 47.619 0.00 0.00 0.00 3.58
538 570 1.957668 TGATTCGATGGCTGGATGTG 58.042 50.000 0.00 0.00 0.00 3.21
539 571 2.569059 CTTGATTCGATGGCTGGATGT 58.431 47.619 0.00 0.00 0.00 3.06
540 572 1.878088 CCTTGATTCGATGGCTGGATG 59.122 52.381 0.00 0.00 0.00 3.51
541 573 1.770658 TCCTTGATTCGATGGCTGGAT 59.229 47.619 0.00 0.00 0.00 3.41
542 574 1.203237 TCCTTGATTCGATGGCTGGA 58.797 50.000 0.00 0.00 0.00 3.86
543 575 1.672881 GTTCCTTGATTCGATGGCTGG 59.327 52.381 0.00 0.00 0.00 4.85
544 576 1.672881 GGTTCCTTGATTCGATGGCTG 59.327 52.381 0.00 0.00 0.00 4.85
545 577 1.281867 TGGTTCCTTGATTCGATGGCT 59.718 47.619 0.00 0.00 0.00 4.75
546 578 1.750193 TGGTTCCTTGATTCGATGGC 58.250 50.000 0.00 0.00 0.00 4.40
547 579 3.127548 CACTTGGTTCCTTGATTCGATGG 59.872 47.826 0.00 0.00 0.00 3.51
548 580 3.426695 GCACTTGGTTCCTTGATTCGATG 60.427 47.826 0.00 0.00 0.00 3.84
549 581 2.749621 GCACTTGGTTCCTTGATTCGAT 59.250 45.455 0.00 0.00 0.00 3.59
550 582 2.151202 GCACTTGGTTCCTTGATTCGA 58.849 47.619 0.00 0.00 0.00 3.71
551 583 1.879380 TGCACTTGGTTCCTTGATTCG 59.121 47.619 0.00 0.00 0.00 3.34
552 584 3.507233 TGATGCACTTGGTTCCTTGATTC 59.493 43.478 0.00 0.00 0.00 2.52
553 585 3.256631 GTGATGCACTTGGTTCCTTGATT 59.743 43.478 0.00 0.00 0.00 2.57
554 586 2.821969 GTGATGCACTTGGTTCCTTGAT 59.178 45.455 0.00 0.00 0.00 2.57
555 587 2.229792 GTGATGCACTTGGTTCCTTGA 58.770 47.619 0.00 0.00 0.00 3.02
556 588 1.955778 TGTGATGCACTTGGTTCCTTG 59.044 47.619 0.00 0.00 35.11 3.61
557 589 2.363306 TGTGATGCACTTGGTTCCTT 57.637 45.000 0.00 0.00 35.11 3.36
558 590 2.440409 GATGTGATGCACTTGGTTCCT 58.560 47.619 0.00 0.00 35.11 3.36
559 591 1.474077 GGATGTGATGCACTTGGTTCC 59.526 52.381 0.00 0.00 35.11 3.62
560 592 2.161855 TGGATGTGATGCACTTGGTTC 58.838 47.619 0.00 0.00 35.11 3.62
561 593 2.291209 TGGATGTGATGCACTTGGTT 57.709 45.000 0.00 0.00 35.11 3.67
562 594 2.291089 TGATGGATGTGATGCACTTGGT 60.291 45.455 0.00 0.00 35.11 3.67
563 595 2.357952 CTGATGGATGTGATGCACTTGG 59.642 50.000 0.00 0.00 35.11 3.61
564 596 3.275999 TCTGATGGATGTGATGCACTTG 58.724 45.455 0.00 0.00 35.11 3.16
565 597 3.639672 TCTGATGGATGTGATGCACTT 57.360 42.857 0.00 0.00 35.11 3.16
566 598 3.477530 CATCTGATGGATGTGATGCACT 58.522 45.455 9.82 0.00 44.88 4.40
567 599 3.898517 CATCTGATGGATGTGATGCAC 57.101 47.619 9.82 0.00 44.88 4.57
579 611 4.025396 GCATGAACGACTAACCATCTGATG 60.025 45.833 10.71 10.71 0.00 3.07
580 612 4.122776 GCATGAACGACTAACCATCTGAT 58.877 43.478 0.00 0.00 0.00 2.90
581 613 3.056179 TGCATGAACGACTAACCATCTGA 60.056 43.478 0.00 0.00 0.00 3.27
582 614 3.261580 TGCATGAACGACTAACCATCTG 58.738 45.455 0.00 0.00 0.00 2.90
583 615 3.610040 TGCATGAACGACTAACCATCT 57.390 42.857 0.00 0.00 0.00 2.90
584 616 3.060272 CGATGCATGAACGACTAACCATC 60.060 47.826 2.46 0.00 0.00 3.51
585 617 2.866156 CGATGCATGAACGACTAACCAT 59.134 45.455 2.46 0.00 0.00 3.55
586 618 2.267426 CGATGCATGAACGACTAACCA 58.733 47.619 2.46 0.00 0.00 3.67
587 619 2.029244 CACGATGCATGAACGACTAACC 59.971 50.000 2.46 0.00 0.00 2.85
588 620 2.534939 GCACGATGCATGAACGACTAAC 60.535 50.000 2.46 0.00 44.26 2.34
589 621 1.658596 GCACGATGCATGAACGACTAA 59.341 47.619 2.46 0.00 44.26 2.24
590 622 1.277326 GCACGATGCATGAACGACTA 58.723 50.000 2.46 0.00 44.26 2.59
591 623 2.081526 GCACGATGCATGAACGACT 58.918 52.632 2.46 0.00 44.26 4.18
592 624 4.651317 GCACGATGCATGAACGAC 57.349 55.556 2.46 0.00 44.26 4.34
601 633 2.751436 ACCCACCATGCACGATGC 60.751 61.111 0.00 0.00 45.29 3.91
602 634 2.463620 CGACCCACCATGCACGATG 61.464 63.158 0.00 0.00 0.00 3.84
603 635 2.125147 CGACCCACCATGCACGAT 60.125 61.111 0.00 0.00 0.00 3.73
604 636 4.386951 CCGACCCACCATGCACGA 62.387 66.667 0.00 0.00 0.00 4.35
606 638 4.722700 AGCCGACCCACCATGCAC 62.723 66.667 0.00 0.00 0.00 4.57
607 639 4.720902 CAGCCGACCCACCATGCA 62.721 66.667 0.00 0.00 0.00 3.96
608 640 4.722700 ACAGCCGACCCACCATGC 62.723 66.667 0.00 0.00 0.00 4.06
609 641 2.746412 TTCACAGCCGACCCACCATG 62.746 60.000 0.00 0.00 0.00 3.66
610 642 2.469465 CTTCACAGCCGACCCACCAT 62.469 60.000 0.00 0.00 0.00 3.55
611 643 3.164977 TTCACAGCCGACCCACCA 61.165 61.111 0.00 0.00 0.00 4.17
612 644 2.358737 CTTCACAGCCGACCCACC 60.359 66.667 0.00 0.00 0.00 4.61
613 645 3.050275 GCTTCACAGCCGACCCAC 61.050 66.667 0.00 0.00 40.61 4.61
614 646 3.535629 CTGCTTCACAGCCGACCCA 62.536 63.158 0.00 0.00 46.74 4.51
615 647 2.743928 CTGCTTCACAGCCGACCC 60.744 66.667 0.00 0.00 46.74 4.46
623 655 3.787785 TGAGTAACGAAACTGCTTCACA 58.212 40.909 0.00 0.00 33.17 3.58
624 656 4.789095 TTGAGTAACGAAACTGCTTCAC 57.211 40.909 0.00 0.00 33.17 3.18
625 657 7.011576 TGTTATTTGAGTAACGAAACTGCTTCA 59.988 33.333 0.00 0.00 37.37 3.02
626 658 7.349711 TGTTATTTGAGTAACGAAACTGCTTC 58.650 34.615 0.00 0.00 37.37 3.86
627 659 7.254227 TGTTATTTGAGTAACGAAACTGCTT 57.746 32.000 0.00 0.00 37.37 3.91
628 660 6.854496 TGTTATTTGAGTAACGAAACTGCT 57.146 33.333 0.00 0.00 37.37 4.24
629 661 7.901874 TTTGTTATTTGAGTAACGAAACTGC 57.098 32.000 0.00 0.00 35.85 4.40
630 662 8.417176 GCATTTGTTATTTGAGTAACGAAACTG 58.583 33.333 0.00 1.73 39.88 3.16
631 663 8.132362 TGCATTTGTTATTTGAGTAACGAAACT 58.868 29.630 0.00 0.00 39.88 2.66
632 664 8.205297 GTGCATTTGTTATTTGAGTAACGAAAC 58.795 33.333 0.00 0.00 39.88 2.78
633 665 7.112287 CGTGCATTTGTTATTTGAGTAACGAAA 59.888 33.333 0.00 2.15 39.88 3.46
634 666 6.575572 CGTGCATTTGTTATTTGAGTAACGAA 59.424 34.615 0.00 2.88 40.42 3.85
635 667 6.074642 CGTGCATTTGTTATTTGAGTAACGA 58.925 36.000 0.00 0.00 37.37 3.85
636 668 5.282778 CCGTGCATTTGTTATTTGAGTAACG 59.717 40.000 0.00 0.00 37.37 3.18
637 669 5.571357 CCCGTGCATTTGTTATTTGAGTAAC 59.429 40.000 0.00 0.00 35.60 2.50
638 670 5.241949 ACCCGTGCATTTGTTATTTGAGTAA 59.758 36.000 0.00 0.00 0.00 2.24
639 671 4.762765 ACCCGTGCATTTGTTATTTGAGTA 59.237 37.500 0.00 0.00 0.00 2.59
640 672 3.572255 ACCCGTGCATTTGTTATTTGAGT 59.428 39.130 0.00 0.00 0.00 3.41
641 673 3.919804 CACCCGTGCATTTGTTATTTGAG 59.080 43.478 0.00 0.00 0.00 3.02
642 674 3.906998 CACCCGTGCATTTGTTATTTGA 58.093 40.909 0.00 0.00 0.00 2.69
722 754 4.076394 TGCAACTTTATTTAACTCGGCCT 58.924 39.130 0.00 0.00 0.00 5.19
724 756 5.291293 TCTGCAACTTTATTTAACTCGGC 57.709 39.130 0.00 0.00 0.00 5.54
764 827 2.098117 CCTTGTCGCCATCCAGAATTTC 59.902 50.000 0.00 0.00 0.00 2.17
791 854 3.196913 GAGCCGCCGTACTAGGAGC 62.197 68.421 0.00 0.00 33.79 4.70
792 855 1.173444 ATGAGCCGCCGTACTAGGAG 61.173 60.000 0.00 0.00 0.00 3.69
837 1410 3.394674 TCTCAATAACGCCACTGTTCA 57.605 42.857 0.00 0.00 33.32 3.18
878 1607 1.094785 CAAATTACCGTGGAGCCCTG 58.905 55.000 0.00 0.00 0.00 4.45
879 1608 0.034477 CCAAATTACCGTGGAGCCCT 60.034 55.000 0.00 0.00 37.03 5.19
880 1609 1.663379 GCCAAATTACCGTGGAGCCC 61.663 60.000 0.00 0.00 37.03 5.19
881 1610 0.679960 AGCCAAATTACCGTGGAGCC 60.680 55.000 0.00 0.00 37.03 4.70
882 1611 0.451783 CAGCCAAATTACCGTGGAGC 59.548 55.000 0.00 0.00 37.03 4.70
883 1612 1.094785 CCAGCCAAATTACCGTGGAG 58.905 55.000 0.00 0.00 37.03 3.86
884 1613 0.322997 CCCAGCCAAATTACCGTGGA 60.323 55.000 0.00 0.00 37.03 4.02
931 1660 0.695462 ATGGTGCCATCCCTAGCTCA 60.695 55.000 0.00 0.00 29.42 4.26
1002 1731 0.525761 GTGTGCCTTTGTGTGTGTGT 59.474 50.000 0.00 0.00 0.00 3.72
1003 1732 0.525311 TGTGTGCCTTTGTGTGTGTG 59.475 50.000 0.00 0.00 0.00 3.82
1004 1733 0.810648 CTGTGTGCCTTTGTGTGTGT 59.189 50.000 0.00 0.00 0.00 3.72
1021 1750 1.408702 GCTTCCTCTGCTCCTCTACTG 59.591 57.143 0.00 0.00 0.00 2.74
1022 1751 1.006519 TGCTTCCTCTGCTCCTCTACT 59.993 52.381 0.00 0.00 0.00 2.57
1023 1752 1.408702 CTGCTTCCTCTGCTCCTCTAC 59.591 57.143 0.00 0.00 0.00 2.59
1024 1753 1.286257 TCTGCTTCCTCTGCTCCTCTA 59.714 52.381 0.00 0.00 0.00 2.43
1025 1754 0.040942 TCTGCTTCCTCTGCTCCTCT 59.959 55.000 0.00 0.00 0.00 3.69
1026 1755 0.901124 TTCTGCTTCCTCTGCTCCTC 59.099 55.000 0.00 0.00 0.00 3.71
1027 1756 0.903942 CTTCTGCTTCCTCTGCTCCT 59.096 55.000 0.00 0.00 0.00 3.69
1028 1757 0.744057 GCTTCTGCTTCCTCTGCTCC 60.744 60.000 0.00 0.00 36.03 4.70
1029 1758 2.766239 GCTTCTGCTTCCTCTGCTC 58.234 57.895 0.00 0.00 36.03 4.26
1060 1789 1.474478 TGCTACGGAGAAGAAGCTGAG 59.526 52.381 0.00 0.00 35.95 3.35
1140 1869 1.368374 TGGAGTAGGAAACAAGGGGG 58.632 55.000 0.00 0.00 0.00 5.40
1141 1870 2.846827 AGATGGAGTAGGAAACAAGGGG 59.153 50.000 0.00 0.00 0.00 4.79
1142 1871 4.518249 GAAGATGGAGTAGGAAACAAGGG 58.482 47.826 0.00 0.00 0.00 3.95
1268 1999 3.189287 CCTCAAGGATTTCAGAACAACCG 59.811 47.826 0.00 0.00 37.39 4.44
1939 2671 4.309950 GTCGACCACGGCCCACTT 62.310 66.667 3.51 0.00 38.25 3.16
2256 2988 2.029020 CGGAGTGAAGAGGAACATGTCA 60.029 50.000 0.00 0.00 0.00 3.58
2339 3071 1.370051 GCAAGTTCGTCGCAAACCC 60.370 57.895 0.00 0.00 0.00 4.11
2343 3075 1.436195 AAGCAGCAAGTTCGTCGCAA 61.436 50.000 0.00 0.00 0.00 4.85
2346 3078 0.304705 ACAAAGCAGCAAGTTCGTCG 59.695 50.000 0.00 0.00 0.00 5.12
2361 3093 9.549078 TCTACTATGACACACAACATTAACAAA 57.451 29.630 0.00 0.00 0.00 2.83
2362 3094 9.719355 ATCTACTATGACACACAACATTAACAA 57.281 29.630 0.00 0.00 0.00 2.83
2363 3095 9.150348 CATCTACTATGACACACAACATTAACA 57.850 33.333 0.00 0.00 0.00 2.41
2364 3096 9.366216 TCATCTACTATGACACACAACATTAAC 57.634 33.333 0.00 0.00 0.00 2.01
2367 3099 9.453572 AAATCATCTACTATGACACACAACATT 57.546 29.630 0.00 0.00 0.00 2.71
2368 3100 8.886719 CAAATCATCTACTATGACACACAACAT 58.113 33.333 0.00 0.00 0.00 2.71
2369 3101 7.148423 GCAAATCATCTACTATGACACACAACA 60.148 37.037 0.00 0.00 0.00 3.33
2370 3102 7.148423 TGCAAATCATCTACTATGACACACAAC 60.148 37.037 0.00 0.00 0.00 3.32
2371 3103 6.878389 TGCAAATCATCTACTATGACACACAA 59.122 34.615 0.00 0.00 0.00 3.33
2589 3348 1.949847 CTGCCCCACGTCGAGATTCT 61.950 60.000 0.00 0.00 0.00 2.40
2623 3382 1.595794 GGTGTGTGTGTTAAGTGGACG 59.404 52.381 0.00 0.00 0.00 4.79
2625 3384 1.134037 GGGGTGTGTGTGTTAAGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
2696 3458 0.037697 ATGAAGAACCACTGCGCGTA 60.038 50.000 8.43 0.71 0.00 4.42
2699 3461 1.291877 ACGATGAAGAACCACTGCGC 61.292 55.000 0.00 0.00 0.00 6.09
2829 3592 1.322538 GCAACCGCTGAAATCCCCAT 61.323 55.000 0.00 0.00 34.30 4.00
2852 3615 1.131928 AGAAACGGCCACCCTAACCT 61.132 55.000 2.24 0.00 0.00 3.50
3218 3981 2.289820 GACGAGCACATGATAGGTACGA 59.710 50.000 0.00 0.00 0.00 3.43
3219 3982 2.651701 GACGAGCACATGATAGGTACG 58.348 52.381 0.00 3.94 0.00 3.67
3240 4003 3.319441 TTAGAACCCTTCCCGCCGC 62.319 63.158 0.00 0.00 0.00 6.53
3241 4004 1.153429 CTTAGAACCCTTCCCGCCG 60.153 63.158 0.00 0.00 0.00 6.46
3244 4007 0.613777 AGCACTTAGAACCCTTCCCG 59.386 55.000 0.00 0.00 0.00 5.14
3268 4031 1.279271 ACCACCTGCTACACTGATTCC 59.721 52.381 0.00 0.00 0.00 3.01
3370 4133 0.743345 AACTGGGGATAAGTTCGCGC 60.743 55.000 0.00 0.00 38.15 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.