Multiple sequence alignment - TraesCS5D01G171800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G171800 chr5D 100.000 3167 0 0 1 3167 268884998 268881832 0.000000e+00 5849.0
1 TraesCS5D01G171800 chr5B 91.292 1711 94 26 674 2352 304607021 304605334 0.000000e+00 2283.0
2 TraesCS5D01G171800 chr5B 92.250 671 32 12 7 676 304607705 304607054 0.000000e+00 933.0
3 TraesCS5D01G171800 chr5B 87.629 388 19 8 2788 3167 304604999 304604633 1.050000e-114 424.0
4 TraesCS5D01G171800 chr5B 89.933 149 11 2 2632 2779 304605266 304605121 4.170000e-44 189.0
5 TraesCS5D01G171800 chr5B 95.714 70 3 0 2375 2444 304605336 304605267 2.580000e-21 113.0
6 TraesCS5D01G171800 chr5A 90.493 1441 63 31 1 1403 356479566 356478162 0.000000e+00 1834.0
7 TraesCS5D01G171800 chr5A 93.316 1167 50 12 1426 2567 356476849 356475686 0.000000e+00 1698.0
8 TraesCS5D01G171800 chr5A 89.655 580 29 11 2619 3167 356475653 356475074 0.000000e+00 710.0
9 TraesCS5D01G171800 chr4A 90.909 55 4 1 2329 2382 643452467 643452521 4.380000e-09 73.1
10 TraesCS5D01G171800 chr3D 89.130 46 5 0 1213 1258 19888379 19888334 1.230000e-04 58.4
11 TraesCS5D01G171800 chr3A 94.118 34 2 0 2275 2308 446672490 446672457 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G171800 chr5D 268881832 268884998 3166 True 5849.0 5849 100.000000 1 3167 1 chr5D.!!$R1 3166
1 TraesCS5D01G171800 chr5B 304604633 304607705 3072 True 788.4 2283 91.363600 7 3167 5 chr5B.!!$R1 3160
2 TraesCS5D01G171800 chr5A 356475074 356479566 4492 True 1414.0 1834 91.154667 1 3167 3 chr5A.!!$R1 3166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.387750 GGCAGCTTGTTTGTAGCAGC 60.388 55.0 0.0 0.0 46.57 5.25 F
1374 1442 0.321653 GCTCCGGACTGGACAACATT 60.322 55.0 0.0 0.0 43.74 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2118 3476 0.107897 ACGTGGCATTTAGGATCGCA 60.108 50.0 0.00 0.00 0.0 5.10 R
2715 4116 0.290840 CGTTCGATCGTGTGTTAGCG 59.709 55.0 15.94 4.52 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 1.361668 CGATGCTGGTGTACACTGGC 61.362 60.000 24.55 25.03 0.00 4.85
442 443 4.155099 TGTTTGTGTTGATATAAGGCACGG 59.845 41.667 0.00 0.00 33.23 4.94
465 466 6.172630 GGCCCTTTTTGTTTTGTATGATGAT 58.827 36.000 0.00 0.00 0.00 2.45
466 467 6.092533 GGCCCTTTTTGTTTTGTATGATGATG 59.907 38.462 0.00 0.00 0.00 3.07
467 468 6.650390 GCCCTTTTTGTTTTGTATGATGATGT 59.350 34.615 0.00 0.00 0.00 3.06
468 469 7.173047 GCCCTTTTTGTTTTGTATGATGATGTT 59.827 33.333 0.00 0.00 0.00 2.71
469 470 8.497554 CCCTTTTTGTTTTGTATGATGATGTTG 58.502 33.333 0.00 0.00 0.00 3.33
470 471 9.258826 CCTTTTTGTTTTGTATGATGATGTTGA 57.741 29.630 0.00 0.00 0.00 3.18
483 484 3.538591 TGATGTTGAGATAGGCAGCTTG 58.461 45.455 0.00 0.00 0.00 4.01
485 486 3.423539 TGTTGAGATAGGCAGCTTGTT 57.576 42.857 0.00 0.00 0.00 2.83
488 489 3.423539 TGAGATAGGCAGCTTGTTTGT 57.576 42.857 0.00 0.00 0.00 2.83
489 490 4.551702 TGAGATAGGCAGCTTGTTTGTA 57.448 40.909 0.00 0.00 0.00 2.41
490 491 4.507710 TGAGATAGGCAGCTTGTTTGTAG 58.492 43.478 0.00 0.00 0.00 2.74
491 492 3.274288 AGATAGGCAGCTTGTTTGTAGC 58.726 45.455 0.00 0.00 38.93 3.58
492 493 2.559698 TAGGCAGCTTGTTTGTAGCA 57.440 45.000 0.00 0.00 41.11 3.49
493 494 1.242076 AGGCAGCTTGTTTGTAGCAG 58.758 50.000 0.00 0.00 41.11 4.24
494 495 0.387750 GGCAGCTTGTTTGTAGCAGC 60.388 55.000 0.00 0.00 46.57 5.25
555 556 7.576750 ACTTGTATAATATTATGTCGTGGCG 57.423 36.000 16.72 2.05 0.00 5.69
559 560 7.146648 TGTATAATATTATGTCGTGGCGTTGA 58.853 34.615 16.72 0.00 0.00 3.18
583 584 3.428589 GGCCTTCATTCTCAACATGCTTC 60.429 47.826 0.00 0.00 0.00 3.86
595 596 1.002868 ATGCTTCGCTCCTGCTGTT 60.003 52.632 0.00 0.00 36.97 3.16
618 619 2.289547 TCTGTTACAGTTGCCGCTTTTC 59.710 45.455 12.41 0.00 32.61 2.29
643 651 2.362329 TTTTGGCCTGCGCTGGTTTC 62.362 55.000 30.72 21.14 34.44 2.78
649 657 2.203337 TGCGCTGGTTTCCTGCTT 60.203 55.556 9.73 0.00 44.56 3.91
652 660 1.372128 CGCTGGTTTCCTGCTTTGC 60.372 57.895 13.86 0.00 44.56 3.68
663 671 0.677731 CTGCTTTGCCTCGGGATTGA 60.678 55.000 0.00 0.00 0.00 2.57
740 786 2.070654 AAAGCGCCACCGAAACTTGG 62.071 55.000 2.29 0.00 36.29 3.61
747 793 2.287368 GCCACCGAAACTTGGTTAACTG 60.287 50.000 5.42 0.00 37.72 3.16
756 802 6.128902 CGAAACTTGGTTAACTGCTACTAGTG 60.129 42.308 5.39 0.00 0.00 2.74
766 812 1.087501 GCTACTAGTGGTTGGCTTGC 58.912 55.000 5.39 0.00 0.00 4.01
782 828 3.766676 CTTGCAGTACGAGCTAGAAGA 57.233 47.619 15.62 0.00 37.07 2.87
783 829 4.098055 CTTGCAGTACGAGCTAGAAGAA 57.902 45.455 15.62 1.76 37.07 2.52
786 832 3.444034 TGCAGTACGAGCTAGAAGAATGT 59.556 43.478 13.27 0.00 0.00 2.71
787 833 4.638865 TGCAGTACGAGCTAGAAGAATGTA 59.361 41.667 13.27 0.00 0.00 2.29
788 834 4.971220 GCAGTACGAGCTAGAAGAATGTAC 59.029 45.833 0.00 0.00 0.00 2.90
790 836 5.066117 CAGTACGAGCTAGAAGAATGTACCA 59.934 44.000 0.00 0.00 33.08 3.25
791 837 4.640789 ACGAGCTAGAAGAATGTACCAG 57.359 45.455 0.00 0.00 0.00 4.00
792 838 3.181485 ACGAGCTAGAAGAATGTACCAGC 60.181 47.826 0.00 0.00 0.00 4.85
793 839 3.067461 CGAGCTAGAAGAATGTACCAGCT 59.933 47.826 0.00 0.00 40.41 4.24
794 840 4.440802 CGAGCTAGAAGAATGTACCAGCTT 60.441 45.833 0.00 0.00 37.97 3.74
795 841 4.764172 AGCTAGAAGAATGTACCAGCTTG 58.236 43.478 0.00 0.00 34.35 4.01
796 842 3.873952 GCTAGAAGAATGTACCAGCTTGG 59.126 47.826 0.00 1.16 45.02 3.61
852 898 1.589716 GATTGGCGGCTGCAAGAAGT 61.590 55.000 21.31 0.00 45.35 3.01
898 944 0.615331 AAGCTCGGCTCATCCTTCAA 59.385 50.000 0.00 0.00 38.25 2.69
914 960 1.548081 TCAACCAATCACCATGCCTG 58.452 50.000 0.00 0.00 0.00 4.85
934 980 3.181967 GGCTCGTACAGTGCAGCG 61.182 66.667 11.71 0.00 40.84 5.18
986 1054 1.421485 CCACAGCACGCGAGAATTC 59.579 57.895 15.93 0.00 0.00 2.17
1043 1111 0.903454 CCCGTGGTCTTGGTCCTAGT 60.903 60.000 0.00 0.00 0.00 2.57
1054 1122 1.517832 GTCCTAGTGCATGCCGTCT 59.482 57.895 16.68 13.16 0.00 4.18
1374 1442 0.321653 GCTCCGGACTGGACAACATT 60.322 55.000 0.00 0.00 43.74 2.71
1403 1471 3.586470 AATCCCGGTAACCATGCATAA 57.414 42.857 0.00 0.00 0.00 1.90
1404 1472 3.586470 ATCCCGGTAACCATGCATAAA 57.414 42.857 0.00 0.00 0.00 1.40
1405 1473 3.586470 TCCCGGTAACCATGCATAAAT 57.414 42.857 0.00 0.00 0.00 1.40
1406 1474 3.218453 TCCCGGTAACCATGCATAAATG 58.782 45.455 0.00 0.00 0.00 2.32
1524 2879 2.360726 TACACGGAGCGGCTGAGA 60.361 61.111 7.50 0.00 0.00 3.27
1626 2981 0.974383 AGAACTACCTGGTGTTCCCG 59.026 55.000 25.15 7.24 42.32 5.14
1787 3142 4.452733 GAGGGCCGTCAACCTCCG 62.453 72.222 20.47 0.00 46.01 4.63
1790 3145 4.778143 GGCCGTCAACCTCCGCAT 62.778 66.667 0.00 0.00 0.00 4.73
1858 3213 3.157252 GCAGGCTCGAGGGGATGA 61.157 66.667 15.58 0.00 0.00 2.92
1860 3215 1.670590 CAGGCTCGAGGGGATGATC 59.329 63.158 15.58 0.00 0.00 2.92
2029 3387 4.704833 GGGCGCTGTGGAGCTTGA 62.705 66.667 7.64 0.00 43.77 3.02
2064 3422 2.235016 CGACGACGCCGGCAAATAT 61.235 57.895 28.98 7.14 46.16 1.28
2115 3473 0.969894 GGGCGTACAGGATGATAGCT 59.030 55.000 0.00 0.00 39.69 3.32
2118 3476 1.341531 GCGTACAGGATGATAGCTGGT 59.658 52.381 0.00 0.00 39.69 4.00
2121 3479 0.105593 ACAGGATGATAGCTGGTGCG 59.894 55.000 0.00 0.00 41.52 5.34
2223 3584 6.257994 TCCTAGAATGATGGAAGCAGATTT 57.742 37.500 0.00 0.00 32.93 2.17
2233 3594 5.823209 TGGAAGCAGATTTCATACATGTG 57.177 39.130 9.11 0.00 0.00 3.21
2265 3626 6.541278 ACAAGTAAAAAGTCTAGTGACCAACC 59.459 38.462 0.00 0.00 43.91 3.77
2304 3671 2.669777 AAACCCAACGTCCGGTCTGG 62.670 60.000 0.00 0.00 40.09 3.86
2431 3809 1.854280 AGTCCCCTGTAAACCAAACCA 59.146 47.619 0.00 0.00 0.00 3.67
2460 3838 8.250332 AGTTGAAAAGCAATAAAGAAGAACACA 58.750 29.630 0.00 0.00 39.03 3.72
2471 3849 3.470567 GAACACAGGCTCGACGCG 61.471 66.667 3.53 3.53 40.44 6.01
2509 3892 2.182614 ATAACCGTGCGTGTTGCTGC 62.183 55.000 0.00 0.00 46.63 5.25
2565 3951 2.086869 CACGTCCAGCAAAGGATCAAT 58.913 47.619 0.00 0.00 40.42 2.57
2566 3952 2.489329 CACGTCCAGCAAAGGATCAATT 59.511 45.455 0.00 0.00 40.42 2.32
2567 3953 2.749621 ACGTCCAGCAAAGGATCAATTC 59.250 45.455 0.00 0.00 40.42 2.17
2568 3954 3.012518 CGTCCAGCAAAGGATCAATTCT 58.987 45.455 0.00 0.00 40.42 2.40
2569 3955 3.064545 CGTCCAGCAAAGGATCAATTCTC 59.935 47.826 0.00 0.00 40.42 2.87
2570 3956 4.012374 GTCCAGCAAAGGATCAATTCTCA 58.988 43.478 0.00 0.00 40.42 3.27
2571 3957 4.460382 GTCCAGCAAAGGATCAATTCTCAA 59.540 41.667 0.00 0.00 40.42 3.02
2572 3958 5.047802 GTCCAGCAAAGGATCAATTCTCAAA 60.048 40.000 0.00 0.00 40.42 2.69
2573 3959 5.539574 TCCAGCAAAGGATCAATTCTCAAAA 59.460 36.000 0.00 0.00 31.23 2.44
2574 3960 6.041865 TCCAGCAAAGGATCAATTCTCAAAAA 59.958 34.615 0.00 0.00 31.23 1.94
2618 4004 1.452833 GGATCAGGTGGCCAGCTTC 60.453 63.158 34.41 27.94 36.98 3.86
2619 4005 1.300963 GATCAGGTGGCCAGCTTCA 59.699 57.895 34.41 23.58 36.98 3.02
2620 4006 1.001641 ATCAGGTGGCCAGCTTCAC 60.002 57.895 34.41 7.57 36.98 3.18
2671 4069 1.129326 CAGTGAGTTGGTTCGTCGTC 58.871 55.000 0.00 0.00 0.00 4.20
2799 4314 8.944029 CAGAAATCTTCTCTCTAGCAATTTCAA 58.056 33.333 0.00 0.00 38.11 2.69
2836 4351 0.036765 TCGATAAGCAGCCCACGTTT 60.037 50.000 0.00 0.00 0.00 3.60
2879 4394 0.392998 CCGGTGTAAGCTGGCTGATT 60.393 55.000 0.00 0.00 0.00 2.57
2911 4426 6.382608 GGAAAAAGTTAAGGCACTCTTGATC 58.617 40.000 0.00 0.00 38.49 2.92
3000 4527 5.719085 ACCATGATGAAGAGAGTGTACTTCT 59.281 40.000 0.00 0.00 41.79 2.85
3003 4530 9.072375 CCATGATGAAGAGAGTGTACTTCTATA 57.928 37.037 0.00 0.00 41.79 1.31
3153 4688 2.613725 CCATATGAAGCTGATGCGGCTA 60.614 50.000 3.65 0.00 46.32 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.488705 AACCTTCATCTGACCGGGCA 61.489 55.000 11.16 11.16 0.00 5.36
95 96 2.357881 TGCAGCTGCTCGACCAAG 60.358 61.111 36.61 0.00 42.66 3.61
402 403 1.294780 CAGTGGAGTGGAGTGGAGC 59.705 63.158 0.00 0.00 0.00 4.70
442 443 6.650390 ACATCATCATACAAAACAAAAAGGGC 59.350 34.615 0.00 0.00 0.00 5.19
465 466 3.423539 AACAAGCTGCCTATCTCAACA 57.576 42.857 0.00 0.00 0.00 3.33
466 467 3.503748 ACAAACAAGCTGCCTATCTCAAC 59.496 43.478 0.00 0.00 0.00 3.18
467 468 3.754965 ACAAACAAGCTGCCTATCTCAA 58.245 40.909 0.00 0.00 0.00 3.02
468 469 3.423539 ACAAACAAGCTGCCTATCTCA 57.576 42.857 0.00 0.00 0.00 3.27
469 470 3.311048 GCTACAAACAAGCTGCCTATCTC 59.689 47.826 0.00 0.00 37.01 2.75
470 471 3.274288 GCTACAAACAAGCTGCCTATCT 58.726 45.455 0.00 0.00 37.01 1.98
555 556 1.808411 TGAGAATGAAGGCCGTCAAC 58.192 50.000 25.43 20.34 0.00 3.18
559 560 2.086869 CATGTTGAGAATGAAGGCCGT 58.913 47.619 0.00 0.00 0.00 5.68
583 584 5.493353 CTGTAACAGATAACAGCAGGAGCG 61.493 50.000 0.00 0.00 38.79 5.03
595 596 3.328382 AAGCGGCAACTGTAACAGATA 57.672 42.857 1.45 0.00 35.18 1.98
631 639 1.799258 AAAGCAGGAAACCAGCGCAG 61.799 55.000 11.47 0.00 37.01 5.18
643 651 1.379044 AATCCCGAGGCAAAGCAGG 60.379 57.895 0.00 0.00 0.00 4.85
649 657 0.463654 CCGAATCAATCCCGAGGCAA 60.464 55.000 0.00 0.00 0.00 4.52
652 660 1.609061 CCATCCGAATCAATCCCGAGG 60.609 57.143 0.00 0.00 0.00 4.63
663 671 1.564348 AGCCACTTAACCCATCCGAAT 59.436 47.619 0.00 0.00 0.00 3.34
740 786 3.683340 GCCAACCACTAGTAGCAGTTAAC 59.317 47.826 0.00 0.00 0.00 2.01
747 793 1.087501 GCAAGCCAACCACTAGTAGC 58.912 55.000 0.00 0.00 0.00 3.58
756 802 1.912371 GCTCGTACTGCAAGCCAACC 61.912 60.000 0.00 0.00 37.60 3.77
766 812 5.066117 TGGTACATTCTTCTAGCTCGTACTG 59.934 44.000 0.00 0.00 0.00 2.74
788 834 1.298859 GCAACGTAGGACCAAGCTGG 61.299 60.000 0.00 0.00 45.02 4.85
790 836 0.324943 ATGCAACGTAGGACCAAGCT 59.675 50.000 0.00 0.00 0.00 3.74
791 837 0.447801 CATGCAACGTAGGACCAAGC 59.552 55.000 0.00 0.00 0.00 4.01
792 838 1.808411 ACATGCAACGTAGGACCAAG 58.192 50.000 0.00 0.00 0.00 3.61
793 839 3.068560 GTTACATGCAACGTAGGACCAA 58.931 45.455 0.00 0.00 0.00 3.67
794 840 2.690786 GTTACATGCAACGTAGGACCA 58.309 47.619 0.00 0.00 0.00 4.02
795 841 1.657094 CGTTACATGCAACGTAGGACC 59.343 52.381 20.64 0.00 44.77 4.46
852 898 0.397675 ATCCATCTCTGAGGCGGTGA 60.398 55.000 4.59 0.00 0.00 4.02
898 944 4.770540 CCAGGCATGGTGATTGGT 57.229 55.556 9.85 0.00 42.17 3.67
914 960 4.735132 TGCACTGTACGAGCCGCC 62.735 66.667 0.00 0.00 0.00 6.13
920 966 3.984749 TGCCGCTGCACTGTACGA 61.985 61.111 0.00 0.00 44.23 3.43
934 980 4.148348 CGTGAGCGTAAGATTTATAGTGCC 59.852 45.833 0.00 0.00 43.02 5.01
986 1054 5.124776 AGAGAGGACATGTTTCTCTAGTTCG 59.875 44.000 28.47 0.00 44.29 3.95
1305 1373 3.643595 ATGGTGGATGGTGTGGGCG 62.644 63.158 0.00 0.00 0.00 6.13
1306 1374 1.754234 GATGGTGGATGGTGTGGGC 60.754 63.158 0.00 0.00 0.00 5.36
1362 1430 1.296056 GCGCGGTAATGTTGTCCAGT 61.296 55.000 8.83 0.00 0.00 4.00
1626 2981 1.222113 GAAGCTGTAGCCCCTGACC 59.778 63.158 0.00 0.00 43.38 4.02
1807 3162 3.487202 CGCCATGTTGTACGCGCT 61.487 61.111 5.73 0.00 37.97 5.92
1809 3164 4.514569 GCCGCCATGTTGTACGCG 62.515 66.667 3.53 3.53 44.08 6.01
1950 3305 2.421529 GGCCGAGTTCTCAAACCCATAT 60.422 50.000 0.00 0.00 35.92 1.78
2064 3422 1.081641 GACGGCGTCGAAGAAGACA 60.082 57.895 25.42 0.00 46.91 3.41
2115 3473 0.254462 TGGCATTTAGGATCGCACCA 59.746 50.000 0.00 0.00 0.00 4.17
2118 3476 0.107897 ACGTGGCATTTAGGATCGCA 60.108 50.000 0.00 0.00 0.00 5.10
2121 3479 1.134220 TGGGACGTGGCATTTAGGATC 60.134 52.381 0.00 0.00 0.00 3.36
2150 3511 2.280797 GTCAGTGGAAGCGGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
2304 3671 8.830580 TCATATACTAGTTGGACACGTACTAAC 58.169 37.037 0.00 11.23 0.00 2.34
2431 3809 7.259290 TCTTCTTTATTGCTTTTCAACTCGT 57.741 32.000 0.00 0.00 37.53 4.18
2486 3864 1.680668 CAACACGCACGGTTATTTGG 58.319 50.000 0.00 0.00 0.00 3.28
2509 3892 1.472376 GCACTAGCACTTCTAGCAGGG 60.472 57.143 0.00 0.00 46.93 4.45
2536 3922 2.902705 TGCTGGACGTGAAAAGTACT 57.097 45.000 0.00 0.00 27.15 2.73
2542 3928 2.151202 GATCCTTTGCTGGACGTGAAA 58.849 47.619 0.00 0.00 39.17 2.69
2590 3976 3.774766 GGCCACCTGATCCCTAAATTTTT 59.225 43.478 0.00 0.00 0.00 1.94
2591 3977 3.245948 TGGCCACCTGATCCCTAAATTTT 60.246 43.478 0.00 0.00 0.00 1.82
2592 3978 2.314549 TGGCCACCTGATCCCTAAATTT 59.685 45.455 0.00 0.00 0.00 1.82
2593 3979 1.929494 TGGCCACCTGATCCCTAAATT 59.071 47.619 0.00 0.00 0.00 1.82
2594 3980 1.496429 CTGGCCACCTGATCCCTAAAT 59.504 52.381 0.00 0.00 0.00 1.40
2595 3981 0.918983 CTGGCCACCTGATCCCTAAA 59.081 55.000 0.00 0.00 0.00 1.85
2618 4004 2.661537 TGCTTGTGCGTCGAGGTG 60.662 61.111 7.01 0.00 43.34 4.00
2619 4005 2.644555 AAGTGCTTGTGCGTCGAGGT 62.645 55.000 7.01 0.00 43.34 3.85
2620 4006 1.891060 GAAGTGCTTGTGCGTCGAGG 61.891 60.000 0.00 0.00 43.34 4.63
2621 4007 1.488957 GAAGTGCTTGTGCGTCGAG 59.511 57.895 0.00 0.00 43.34 4.04
2622 4008 2.300066 CGAAGTGCTTGTGCGTCGA 61.300 57.895 0.00 0.00 40.56 4.20
2623 4009 2.168621 CGAAGTGCTTGTGCGTCG 59.831 61.111 0.00 0.00 43.34 5.12
2671 4069 1.047739 GACGACAACAACTACCGACG 58.952 55.000 0.00 0.00 0.00 5.12
2715 4116 0.290840 CGTTCGATCGTGTGTTAGCG 59.709 55.000 15.94 4.52 0.00 4.26
2716 4117 1.609932 TCGTTCGATCGTGTGTTAGC 58.390 50.000 15.94 0.00 0.00 3.09
2718 4119 3.370276 TGTTTCGTTCGATCGTGTGTTA 58.630 40.909 15.94 0.00 0.00 2.41
2799 4314 1.760192 GATTTGCTGCTGGGTCTGAT 58.240 50.000 0.00 0.00 0.00 2.90
2836 4351 2.591429 CCACGCACCAGCTCAACA 60.591 61.111 0.00 0.00 39.10 3.33
2879 4394 3.735514 GCCTTAACTTTTTCCGTGTGCAA 60.736 43.478 0.00 0.00 0.00 4.08
2911 4426 3.751175 CAGCTCTCCTCTTAGGATCGTAG 59.249 52.174 0.00 0.00 44.81 3.51
3000 4527 7.340232 AGTCTACGGTTGTGACCTGTTAATATA 59.660 37.037 0.00 0.00 44.20 0.86
3003 4530 4.282703 AGTCTACGGTTGTGACCTGTTAAT 59.717 41.667 0.00 0.00 44.20 1.40
3010 4537 1.617357 AGGAAGTCTACGGTTGTGACC 59.383 52.381 0.00 0.00 42.87 4.02
3053 4580 2.175878 ACAAGAGCATGAACGCTTCT 57.824 45.000 0.00 0.00 44.01 2.85
3141 4676 0.449388 GCCATATTAGCCGCATCAGC 59.551 55.000 0.00 0.00 37.42 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.