Multiple sequence alignment - TraesCS5D01G171100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G171100 chr5D 100.000 7356 0 0 1 7356 268477149 268484504 0.000000e+00 13585.0
1 TraesCS5D01G171100 chr5D 98.058 309 4 2 1 307 41490839 41491147 3.020000e-148 536.0
2 TraesCS5D01G171100 chr5D 97.735 309 7 0 1 309 446293814 446294122 3.910000e-147 532.0
3 TraesCS5D01G171100 chr5D 95.000 40 2 0 341 380 555325580 555325619 6.160000e-06 63.9
4 TraesCS5D01G171100 chr5B 95.116 6614 216 50 299 6881 303911517 303918054 0.000000e+00 10325.0
5 TraesCS5D01G171100 chr5B 83.791 401 45 10 6964 7353 303920807 303921198 5.420000e-96 363.0
6 TraesCS5D01G171100 chr5A 94.515 3373 143 19 4001 7356 355848977 355852324 0.000000e+00 5166.0
7 TraesCS5D01G171100 chr5A 94.840 3178 135 19 294 3456 355844998 355848161 0.000000e+00 4933.0
8 TraesCS5D01G171100 chr5A 91.758 182 12 2 3447 3628 355848353 355848531 4.410000e-62 250.0
9 TraesCS5D01G171100 chr5A 82.653 98 8 6 312 406 503508227 503508318 2.200000e-10 78.7
10 TraesCS5D01G171100 chr1D 99.003 301 3 0 1 301 470609240 470608940 2.330000e-149 540.0
11 TraesCS5D01G171100 chr2D 99.329 298 1 1 1 298 118738975 118739271 8.400000e-149 538.0
12 TraesCS5D01G171100 chr2D 80.247 81 12 4 294 372 564068266 564068344 2.870000e-04 58.4
13 TraesCS5D01G171100 chr7D 97.476 317 3 4 1 315 149107650 149107337 3.020000e-148 536.0
14 TraesCS5D01G171100 chr7D 97.436 312 5 2 1 312 411900608 411900300 5.050000e-146 529.0
15 TraesCS5D01G171100 chr3D 98.680 303 3 1 2 304 327765277 327765578 3.020000e-148 536.0
16 TraesCS5D01G171100 chr3D 96.835 316 8 2 1 315 520888083 520888397 1.820000e-145 527.0
17 TraesCS5D01G171100 chr6D 98.675 302 3 1 1 302 378398794 378398494 1.090000e-147 534.0
18 TraesCS5D01G171100 chr6D 81.739 115 19 2 293 406 412285831 412285718 2.180000e-15 95.3
19 TraesCS5D01G171100 chr6A 80.000 160 19 11 341 495 234170139 234170290 1.010000e-18 106.0
20 TraesCS5D01G171100 chr1B 79.630 162 22 9 342 499 449251555 449251709 1.010000e-18 106.0
21 TraesCS5D01G171100 chr2A 75.785 223 36 17 294 503 616984048 616984265 6.070000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G171100 chr5D 268477149 268484504 7355 False 13585.000000 13585 100.000000 1 7356 1 chr5D.!!$F2 7355
1 TraesCS5D01G171100 chr5B 303911517 303921198 9681 False 5344.000000 10325 89.453500 299 7353 2 chr5B.!!$F1 7054
2 TraesCS5D01G171100 chr5A 355844998 355852324 7326 False 3449.666667 5166 93.704333 294 7356 3 chr5A.!!$F2 7062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 959 0.033601 CAATCCCACGAAATCCCCCA 60.034 55.000 0.00 0.0 0.00 4.96 F
1725 1745 0.037697 CATTCGGTTCCGACCACTCA 60.038 55.000 13.66 0.0 46.91 3.41 F
1906 1926 0.902531 GAGGTACCTGGCAACTGCTA 59.097 55.000 22.10 0.0 41.70 3.49 F
3151 3177 0.326264 AAGTAGGCTGCCTCCTGTTG 59.674 55.000 27.16 0.0 37.01 3.33 F
4107 4413 0.107831 TGGTTACAGTGGCAGGTCAC 59.892 55.000 0.00 0.0 37.89 3.67 F
4192 4498 0.321741 TGGCATGCCCATTTGCTTTG 60.322 50.000 33.44 0.0 39.18 2.77 F
6075 6392 1.376812 CACCTGCCGTTACCCCTTC 60.377 63.158 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1835 0.527817 GTGTGAATACCTCCTCCGCG 60.528 60.000 0.00 0.0 0.00 6.46 R
2596 2619 1.000163 GTCACAACTTCGGCAGAGAGA 60.000 52.381 3.82 0.0 0.00 3.10 R
3574 3807 1.867233 GGTGCAGTACTTGACAGTGTG 59.133 52.381 0.00 0.0 34.06 3.82 R
4421 4733 0.033504 GAGTCAAGACAAGGCGACCA 59.966 55.000 2.72 0.0 0.00 4.02 R
6064 6381 0.323629 TCTTGGCTGAAGGGGTAACG 59.676 55.000 0.00 0.0 37.60 3.18 R
6191 6508 0.886490 CGGTTGCCTTCTTCACTGCT 60.886 55.000 0.00 0.0 0.00 4.24 R
7259 10258 0.888619 CAAGGCCTAGTCGACACAGA 59.111 55.000 19.50 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.413475 ACACGATCTTTTATGCTATGCTTAG 57.587 36.000 2.28 2.28 0.00 2.18
25 26 6.425114 ACACGATCTTTTATGCTATGCTTAGG 59.575 38.462 8.57 0.00 0.00 2.69
26 27 6.646653 CACGATCTTTTATGCTATGCTTAGGA 59.353 38.462 8.57 6.06 0.00 2.94
27 28 7.332926 CACGATCTTTTATGCTATGCTTAGGAT 59.667 37.037 16.16 16.16 39.53 3.24
28 29 7.880195 ACGATCTTTTATGCTATGCTTAGGATT 59.120 33.333 16.94 0.62 37.61 3.01
29 30 8.173775 CGATCTTTTATGCTATGCTTAGGATTG 58.826 37.037 16.94 6.01 37.61 2.67
30 31 7.750229 TCTTTTATGCTATGCTTAGGATTGG 57.250 36.000 16.94 7.21 37.61 3.16
31 32 6.716628 TCTTTTATGCTATGCTTAGGATTGGG 59.283 38.462 16.94 7.48 37.61 4.12
32 33 5.582950 TTATGCTATGCTTAGGATTGGGT 57.417 39.130 16.94 0.00 37.61 4.51
33 34 3.492102 TGCTATGCTTAGGATTGGGTC 57.508 47.619 8.57 0.00 0.00 4.46
34 35 3.048600 TGCTATGCTTAGGATTGGGTCT 58.951 45.455 8.57 0.00 0.00 3.85
35 36 3.459598 TGCTATGCTTAGGATTGGGTCTT 59.540 43.478 8.57 0.00 0.00 3.01
36 37 3.817647 GCTATGCTTAGGATTGGGTCTTG 59.182 47.826 8.57 0.00 0.00 3.02
37 38 4.687219 GCTATGCTTAGGATTGGGTCTTGT 60.687 45.833 8.57 0.00 0.00 3.16
38 39 3.350219 TGCTTAGGATTGGGTCTTGTC 57.650 47.619 0.00 0.00 0.00 3.18
39 40 2.026262 TGCTTAGGATTGGGTCTTGTCC 60.026 50.000 0.00 0.00 0.00 4.02
40 41 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
41 42 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
42 43 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
43 44 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
44 45 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
45 46 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
46 47 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
47 48 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
48 49 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
49 50 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
50 51 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
51 52 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
52 53 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
53 54 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
54 55 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
55 56 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
56 57 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
57 58 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
58 59 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
59 60 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
60 61 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
61 62 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
69 70 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
70 71 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
71 72 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
72 73 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
73 74 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
74 75 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
75 76 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
76 77 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
77 78 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
78 79 6.881065 CCTAATGATGTGATCCCGTTATCAAT 59.119 38.462 0.00 0.00 37.61 2.57
79 80 6.564709 AATGATGTGATCCCGTTATCAATG 57.435 37.500 0.00 0.00 37.61 2.82
80 81 5.289083 TGATGTGATCCCGTTATCAATGA 57.711 39.130 0.00 0.00 37.61 2.57
81 82 5.056480 TGATGTGATCCCGTTATCAATGAC 58.944 41.667 0.00 0.00 37.61 3.06
82 83 4.479786 TGTGATCCCGTTATCAATGACA 57.520 40.909 0.00 0.00 37.61 3.58
83 84 5.034852 TGTGATCCCGTTATCAATGACAT 57.965 39.130 0.00 0.00 37.61 3.06
84 85 5.056480 TGTGATCCCGTTATCAATGACATC 58.944 41.667 0.00 0.00 37.61 3.06
85 86 4.452455 GTGATCCCGTTATCAATGACATCC 59.548 45.833 0.00 0.00 37.61 3.51
86 87 4.102367 TGATCCCGTTATCAATGACATCCA 59.898 41.667 0.00 0.00 32.97 3.41
87 88 4.495690 TCCCGTTATCAATGACATCCAA 57.504 40.909 0.00 0.00 0.00 3.53
88 89 5.047566 TCCCGTTATCAATGACATCCAAT 57.952 39.130 0.00 0.00 0.00 3.16
89 90 4.821260 TCCCGTTATCAATGACATCCAATG 59.179 41.667 0.00 0.00 0.00 2.82
101 102 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86
102 103 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
103 104 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
104 105 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
105 106 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
106 107 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
107 108 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
108 109 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
109 110 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
110 111 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
111 112 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
112 113 3.843619 TCCATAGTCAGGAAACCATGACA 59.156 43.478 11.85 0.51 46.63 3.58
113 114 4.288366 TCCATAGTCAGGAAACCATGACAA 59.712 41.667 11.85 0.00 46.63 3.18
114 115 5.044919 TCCATAGTCAGGAAACCATGACAAT 60.045 40.000 11.85 0.00 46.63 2.71
115 116 5.297776 CCATAGTCAGGAAACCATGACAATC 59.702 44.000 11.85 0.00 46.63 2.67
116 117 4.647564 AGTCAGGAAACCATGACAATCT 57.352 40.909 11.85 0.00 46.63 2.40
117 118 4.330250 AGTCAGGAAACCATGACAATCTG 58.670 43.478 11.85 0.00 46.63 2.90
118 119 4.074970 GTCAGGAAACCATGACAATCTGT 58.925 43.478 5.50 0.00 44.21 3.41
119 120 4.520492 GTCAGGAAACCATGACAATCTGTT 59.480 41.667 5.50 0.00 44.21 3.16
120 121 4.520111 TCAGGAAACCATGACAATCTGTTG 59.480 41.667 0.00 0.00 41.20 3.33
121 122 4.520111 CAGGAAACCATGACAATCTGTTGA 59.480 41.667 0.00 0.00 38.71 3.18
122 123 5.184479 CAGGAAACCATGACAATCTGTTGAT 59.816 40.000 0.00 0.00 38.71 2.57
123 124 5.416952 AGGAAACCATGACAATCTGTTGATC 59.583 40.000 0.00 0.00 38.71 2.92
124 125 5.183713 GGAAACCATGACAATCTGTTGATCA 59.816 40.000 0.00 0.00 38.71 2.92
125 126 6.294675 GGAAACCATGACAATCTGTTGATCAA 60.295 38.462 3.38 3.38 38.71 2.57
126 127 5.633830 ACCATGACAATCTGTTGATCAAC 57.366 39.130 28.10 28.10 41.50 3.18
127 128 4.154737 ACCATGACAATCTGTTGATCAACG 59.845 41.667 28.55 23.04 43.94 4.10
128 129 4.392754 CCATGACAATCTGTTGATCAACGA 59.607 41.667 28.55 26.46 43.94 3.85
129 130 5.446875 CCATGACAATCTGTTGATCAACGAG 60.447 44.000 28.55 24.84 43.94 4.18
130 131 3.433274 TGACAATCTGTTGATCAACGAGC 59.567 43.478 28.55 18.74 43.94 5.03
131 132 3.668447 ACAATCTGTTGATCAACGAGCT 58.332 40.909 28.55 17.34 43.94 4.09
132 133 4.820897 ACAATCTGTTGATCAACGAGCTA 58.179 39.130 28.55 13.42 43.94 3.32
133 134 4.867047 ACAATCTGTTGATCAACGAGCTAG 59.133 41.667 28.55 20.93 43.94 3.42
134 135 4.727507 ATCTGTTGATCAACGAGCTAGT 57.272 40.909 28.55 13.33 43.94 2.57
135 136 4.098055 TCTGTTGATCAACGAGCTAGTC 57.902 45.455 28.55 6.98 43.94 2.59
136 137 3.506067 TCTGTTGATCAACGAGCTAGTCA 59.494 43.478 28.55 10.88 43.94 3.41
137 138 4.022329 TCTGTTGATCAACGAGCTAGTCAA 60.022 41.667 28.55 10.18 43.94 3.18
138 139 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
139 140 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
140 141 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
141 142 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
142 143 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
143 144 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
144 145 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
145 146 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
146 147 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
147 148 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
148 149 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
149 150 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
150 151 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
151 152 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
152 153 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
153 154 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
154 155 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
155 156 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
156 157 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
157 158 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
158 159 3.900971 ACTAGAGGCTTACTAGGGACAC 58.099 50.000 13.13 0.00 40.86 3.67
159 160 1.765230 AGAGGCTTACTAGGGACACG 58.235 55.000 0.00 0.00 0.00 4.49
160 161 1.005687 AGAGGCTTACTAGGGACACGT 59.994 52.381 0.00 0.00 0.00 4.49
161 162 1.823610 GAGGCTTACTAGGGACACGTT 59.176 52.381 0.00 0.00 0.00 3.99
162 163 1.549170 AGGCTTACTAGGGACACGTTG 59.451 52.381 0.00 0.00 0.00 4.10
163 164 1.274447 GGCTTACTAGGGACACGTTGT 59.726 52.381 0.00 0.00 0.00 3.32
164 165 2.334838 GCTTACTAGGGACACGTTGTG 58.665 52.381 0.00 0.00 39.75 3.33
165 166 2.929592 GCTTACTAGGGACACGTTGTGG 60.930 54.545 1.64 0.00 37.94 4.17
166 167 1.999648 TACTAGGGACACGTTGTGGT 58.000 50.000 1.64 0.00 37.94 4.16
167 168 0.677842 ACTAGGGACACGTTGTGGTC 59.322 55.000 1.64 0.00 37.94 4.02
168 169 0.966920 CTAGGGACACGTTGTGGTCT 59.033 55.000 1.64 0.00 37.94 3.85
169 170 2.165167 CTAGGGACACGTTGTGGTCTA 58.835 52.381 1.64 0.31 37.94 2.59
170 171 1.640917 AGGGACACGTTGTGGTCTAT 58.359 50.000 1.64 0.00 37.94 1.98
171 172 1.275291 AGGGACACGTTGTGGTCTATG 59.725 52.381 1.64 0.00 37.94 2.23
172 173 1.001633 GGGACACGTTGTGGTCTATGT 59.998 52.381 1.64 0.00 37.94 2.29
173 174 2.231964 GGGACACGTTGTGGTCTATGTA 59.768 50.000 1.64 0.00 37.94 2.29
174 175 3.118884 GGGACACGTTGTGGTCTATGTAT 60.119 47.826 1.64 0.00 37.94 2.29
175 176 4.501071 GGACACGTTGTGGTCTATGTATT 58.499 43.478 1.64 0.00 37.94 1.89
176 177 4.565564 GGACACGTTGTGGTCTATGTATTC 59.434 45.833 1.64 0.00 37.94 1.75
177 178 5.142061 ACACGTTGTGGTCTATGTATTCA 57.858 39.130 1.64 0.00 37.94 2.57
178 179 4.927425 ACACGTTGTGGTCTATGTATTCAC 59.073 41.667 1.64 0.00 37.94 3.18
179 180 4.926832 CACGTTGTGGTCTATGTATTCACA 59.073 41.667 0.00 0.00 39.52 3.58
180 181 4.927425 ACGTTGTGGTCTATGTATTCACAC 59.073 41.667 0.00 0.00 37.96 3.82
181 182 4.926832 CGTTGTGGTCTATGTATTCACACA 59.073 41.667 0.00 0.00 37.96 3.72
182 183 5.580691 CGTTGTGGTCTATGTATTCACACAT 59.419 40.000 0.00 0.00 41.88 3.21
183 184 6.455513 CGTTGTGGTCTATGTATTCACACATG 60.456 42.308 0.00 0.00 39.46 3.21
184 185 6.048732 TGTGGTCTATGTATTCACACATGT 57.951 37.500 0.00 0.00 39.46 3.21
185 186 7.176589 TGTGGTCTATGTATTCACACATGTA 57.823 36.000 0.00 0.00 39.46 2.29
186 187 7.791029 TGTGGTCTATGTATTCACACATGTAT 58.209 34.615 0.00 0.00 39.46 2.29
187 188 8.264347 TGTGGTCTATGTATTCACACATGTATT 58.736 33.333 0.00 0.00 39.46 1.89
188 189 9.758651 GTGGTCTATGTATTCACACATGTATTA 57.241 33.333 0.00 0.00 39.46 0.98
189 190 9.758651 TGGTCTATGTATTCACACATGTATTAC 57.241 33.333 0.00 0.00 39.46 1.89
190 191 8.912658 GGTCTATGTATTCACACATGTATTACG 58.087 37.037 0.00 0.00 39.46 3.18
191 192 9.673454 GTCTATGTATTCACACATGTATTACGA 57.327 33.333 0.00 0.00 39.46 3.43
196 197 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
197 198 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
198 199 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
199 200 4.806775 CACACATGTATTACGATTTCCGGA 59.193 41.667 0.00 0.00 43.93 5.14
200 201 4.807304 ACACATGTATTACGATTTCCGGAC 59.193 41.667 1.83 0.00 43.93 4.79
201 202 4.806775 CACATGTATTACGATTTCCGGACA 59.193 41.667 1.83 0.00 43.93 4.02
202 203 5.292345 CACATGTATTACGATTTCCGGACAA 59.708 40.000 1.83 2.11 43.93 3.18
203 204 6.018262 CACATGTATTACGATTTCCGGACAAT 60.018 38.462 1.83 7.66 43.93 2.71
204 205 7.170151 CACATGTATTACGATTTCCGGACAATA 59.830 37.037 1.83 0.00 43.93 1.90
205 206 7.170320 ACATGTATTACGATTTCCGGACAATAC 59.830 37.037 1.83 11.52 43.93 1.89
206 207 6.571605 TGTATTACGATTTCCGGACAATACA 58.428 36.000 1.83 13.77 42.39 2.29
207 208 7.040494 TGTATTACGATTTCCGGACAATACAA 58.960 34.615 1.83 0.00 42.09 2.41
208 209 7.711772 TGTATTACGATTTCCGGACAATACAAT 59.288 33.333 1.83 0.00 42.09 2.71
209 210 6.988622 TTACGATTTCCGGACAATACAATT 57.011 33.333 1.83 0.00 43.93 2.32
210 211 8.665643 ATTACGATTTCCGGACAATACAATTA 57.334 30.769 1.83 0.00 43.93 1.40
211 212 8.665643 TTACGATTTCCGGACAATACAATTAT 57.334 30.769 1.83 0.00 43.93 1.28
212 213 9.761504 TTACGATTTCCGGACAATACAATTATA 57.238 29.630 1.83 0.00 43.93 0.98
213 214 8.306680 ACGATTTCCGGACAATACAATTATAG 57.693 34.615 1.83 0.00 43.93 1.31
214 215 7.095355 ACGATTTCCGGACAATACAATTATAGC 60.095 37.037 1.83 0.00 43.93 2.97
215 216 7.095397 CGATTTCCGGACAATACAATTATAGCA 60.095 37.037 1.83 0.00 33.91 3.49
216 217 8.635765 ATTTCCGGACAATACAATTATAGCAT 57.364 30.769 1.83 0.00 0.00 3.79
217 218 7.433708 TTCCGGACAATACAATTATAGCATG 57.566 36.000 1.83 0.00 0.00 4.06
218 219 6.764379 TCCGGACAATACAATTATAGCATGA 58.236 36.000 0.00 0.00 0.00 3.07
219 220 7.220740 TCCGGACAATACAATTATAGCATGAA 58.779 34.615 0.00 0.00 0.00 2.57
220 221 7.172532 TCCGGACAATACAATTATAGCATGAAC 59.827 37.037 0.00 0.00 0.00 3.18
221 222 7.041440 CCGGACAATACAATTATAGCATGAACA 60.041 37.037 0.00 0.00 0.00 3.18
222 223 8.341903 CGGACAATACAATTATAGCATGAACAA 58.658 33.333 0.00 0.00 0.00 2.83
235 236 8.978874 ATAGCATGAACAATAGACAATTACCA 57.021 30.769 0.00 0.00 0.00 3.25
236 237 7.886629 AGCATGAACAATAGACAATTACCAT 57.113 32.000 0.00 0.00 0.00 3.55
237 238 7.709947 AGCATGAACAATAGACAATTACCATG 58.290 34.615 0.00 0.00 34.41 3.66
238 239 7.557358 AGCATGAACAATAGACAATTACCATGA 59.443 33.333 0.00 0.00 33.82 3.07
239 240 8.190122 GCATGAACAATAGACAATTACCATGAA 58.810 33.333 0.00 0.00 33.82 2.57
240 241 9.507280 CATGAACAATAGACAATTACCATGAAC 57.493 33.333 0.00 0.00 33.82 3.18
241 242 8.628630 TGAACAATAGACAATTACCATGAACA 57.371 30.769 0.00 0.00 0.00 3.18
242 243 9.072375 TGAACAATAGACAATTACCATGAACAA 57.928 29.630 0.00 0.00 0.00 2.83
243 244 9.906660 GAACAATAGACAATTACCATGAACAAA 57.093 29.630 0.00 0.00 0.00 2.83
244 245 9.912634 AACAATAGACAATTACCATGAACAAAG 57.087 29.630 0.00 0.00 0.00 2.77
245 246 9.295825 ACAATAGACAATTACCATGAACAAAGA 57.704 29.630 0.00 0.00 0.00 2.52
280 281 9.533831 AATAACCATTTATTATTGCCTCTAGGG 57.466 33.333 0.00 0.00 36.34 3.53
297 298 2.749600 AGGGCATATTTCCAACATGCA 58.250 42.857 7.94 0.00 45.45 3.96
316 317 2.868583 GCACTACATGACATTGCTCGAT 59.131 45.455 0.00 0.00 0.00 3.59
437 444 6.598064 CCCTAATTTTTATCTCGGTGACTTGT 59.402 38.462 0.00 0.00 0.00 3.16
458 465 4.455533 TGTTGCTTCTTGTATGGACATGTC 59.544 41.667 17.91 17.91 34.86 3.06
550 557 8.447833 GTTCGTCCAACTAATTACATTTCATCA 58.552 33.333 0.00 0.00 31.50 3.07
562 569 7.522901 TTACATTTCATCAATGGCAAAATCG 57.477 32.000 0.00 0.00 46.06 3.34
571 578 7.492020 TCATCAATGGCAAAATCGAATTAAAGG 59.508 33.333 0.00 0.00 0.00 3.11
775 786 4.939368 CGTTGGCCCACGGTGGAA 62.939 66.667 28.36 12.04 40.96 3.53
778 789 4.966787 TGGCCCACGGTGGAAAGC 62.967 66.667 28.36 21.40 40.96 3.51
888 899 2.437895 GCCACTCGTTTAGCCCCC 60.438 66.667 0.00 0.00 0.00 5.40
903 914 1.819305 GCCCCCAGCATATCGAAACAT 60.819 52.381 0.00 0.00 42.97 2.71
933 945 2.492773 CCCGCATCTTGGCCAATCC 61.493 63.158 20.85 6.68 0.00 3.01
946 958 0.755327 CCAATCCCACGAAATCCCCC 60.755 60.000 0.00 0.00 0.00 5.40
947 959 0.033601 CAATCCCACGAAATCCCCCA 60.034 55.000 0.00 0.00 0.00 4.96
961 974 2.034687 CCCACCAGCTCACCAAGG 59.965 66.667 0.00 0.00 0.00 3.61
994 1009 0.593773 GAAGCATCTCTCTCGCGGTC 60.594 60.000 6.13 0.00 0.00 4.79
1230 1245 2.432628 CTCCACAAGGACGGCGTC 60.433 66.667 30.72 30.72 39.61 5.19
1361 1376 2.287668 GCGCGGTGTCTTATCTGAGTAT 60.288 50.000 8.83 0.00 0.00 2.12
1363 1378 4.360563 CGCGGTGTCTTATCTGAGTATTT 58.639 43.478 0.00 0.00 0.00 1.40
1364 1379 5.516996 CGCGGTGTCTTATCTGAGTATTTA 58.483 41.667 0.00 0.00 0.00 1.40
1365 1380 6.150318 CGCGGTGTCTTATCTGAGTATTTAT 58.850 40.000 0.00 0.00 0.00 1.40
1391 1411 5.657470 TTGTTTTCACTTCGAGATCTGTG 57.343 39.130 0.00 1.77 0.00 3.66
1402 1422 2.542618 CGAGATCTGTGAATGTCTCCGG 60.543 54.545 0.00 0.00 34.93 5.14
1725 1745 0.037697 CATTCGGTTCCGACCACTCA 60.038 55.000 13.66 0.00 46.91 3.41
1755 1775 1.004918 CCTGTGTTGGAGTCCCGAC 60.005 63.158 6.74 6.28 45.41 4.79
1906 1926 0.902531 GAGGTACCTGGCAACTGCTA 59.097 55.000 22.10 0.00 41.70 3.49
2169 2189 3.225104 AGAAGAAAAGCCAAGCACATCA 58.775 40.909 0.00 0.00 0.00 3.07
2188 2208 3.349927 TCAGCTGGTTTTGATGATGAGG 58.650 45.455 15.13 0.00 0.00 3.86
2232 2252 1.021202 CACCTTTCAACCACAAGCGA 58.979 50.000 0.00 0.00 0.00 4.93
2234 2254 2.034558 CACCTTTCAACCACAAGCGATT 59.965 45.455 0.00 0.00 0.00 3.34
2235 2255 2.034558 ACCTTTCAACCACAAGCGATTG 59.965 45.455 12.67 12.67 0.00 2.67
2245 2265 3.329386 CACAAGCGATTGAGGAGAAAGA 58.671 45.455 21.96 0.00 0.00 2.52
2283 2303 6.100859 ACCACATGAATGGAGATAGTGAAGAT 59.899 38.462 9.25 0.00 43.02 2.40
2396 2416 0.961753 GCAACTTCTGGAAGGTTGGG 59.038 55.000 13.86 0.00 42.53 4.12
2619 2642 2.560981 TCTCTGCCGAAGTTGTGACATA 59.439 45.455 0.00 0.00 0.00 2.29
3111 3137 4.666512 ACCAGCATTATTCTTGTGGAGTT 58.333 39.130 0.00 0.00 0.00 3.01
3151 3177 0.326264 AAGTAGGCTGCCTCCTGTTG 59.674 55.000 27.16 0.00 37.01 3.33
3192 3218 3.181497 ACACAGTTTGTTCAGTGTCATGC 60.181 43.478 0.00 0.00 40.94 4.06
3193 3219 3.016031 ACAGTTTGTTCAGTGTCATGCA 58.984 40.909 0.00 0.00 0.00 3.96
3194 3220 7.605512 ACACAGTTTGTTCAGTGTCATGCAC 62.606 44.000 11.00 11.00 40.94 4.57
3300 3326 9.398170 CTAATACTTCAAAACAAACCATCAGTG 57.602 33.333 0.00 0.00 0.00 3.66
3326 3352 5.481824 ACTGACTCTTGGTTCACAGATCATA 59.518 40.000 0.00 0.00 0.00 2.15
3458 3689 4.404073 TGGAAAGTGCACATTTAACCAAGT 59.596 37.500 21.04 0.00 0.00 3.16
3554 3787 7.063593 TGATAGTTTGGTAGTAGATGCTCTCT 58.936 38.462 0.00 0.00 38.06 3.10
3601 3834 3.563808 TGTCAAGTACTGCACCACAAATC 59.436 43.478 0.00 0.00 0.00 2.17
3680 3913 1.377536 GAATGAGAGGTTGAGGCTGC 58.622 55.000 0.00 0.00 0.00 5.25
3713 3946 1.202698 GCCCATCCTCTGTACATGACC 60.203 57.143 0.00 0.00 0.00 4.02
3873 4106 8.323567 ACATGAAAATATGAAAGCCCAGAATTT 58.676 29.630 0.00 0.00 0.00 1.82
4065 4371 7.312657 TCAAATTCTCATTCTACAGATGCAC 57.687 36.000 0.00 0.00 0.00 4.57
4107 4413 0.107831 TGGTTACAGTGGCAGGTCAC 59.892 55.000 0.00 0.00 37.89 3.67
4131 4437 2.615912 GGATCAGCTAGCAATTGTGACC 59.384 50.000 18.83 11.09 0.00 4.02
4192 4498 0.321741 TGGCATGCCCATTTGCTTTG 60.322 50.000 33.44 0.00 39.18 2.77
4193 4499 1.650314 GGCATGCCCATTTGCTTTGC 61.650 55.000 27.24 0.00 38.88 3.68
4241 4548 6.883217 AGCTCATAGATGTTGTGATCAAGTTT 59.117 34.615 0.00 0.00 33.97 2.66
4242 4549 7.392673 AGCTCATAGATGTTGTGATCAAGTTTT 59.607 33.333 0.00 0.00 33.97 2.43
4243 4550 7.695618 GCTCATAGATGTTGTGATCAAGTTTTC 59.304 37.037 0.00 0.00 33.97 2.29
4276 4583 6.349300 AGTTTATAGTTGCATACCTGTCCAG 58.651 40.000 0.00 0.00 0.00 3.86
4281 4588 2.488153 GTTGCATACCTGTCCAGTTTCC 59.512 50.000 0.00 0.00 0.00 3.13
4421 4733 2.225091 TGAAGGGGCACAATCAATGTCT 60.225 45.455 0.00 0.00 41.46 3.41
4603 4915 3.788116 TTCCAGGGAATACTGAGGGTA 57.212 47.619 0.00 0.00 40.97 3.69
4709 5021 4.377841 GCTGAAGCACACTTAATCACTGTC 60.378 45.833 0.00 0.00 41.59 3.51
5076 5390 5.665459 AGAGCCAATACACTAAGCACTAAG 58.335 41.667 0.00 0.00 0.00 2.18
5316 5630 2.996621 GTTGCATCTCTCACAGGTACAC 59.003 50.000 0.00 0.00 0.00 2.90
5615 5932 7.287810 ACTTTTCCACAGGTGATAAACTAGTT 58.712 34.615 1.12 1.12 0.00 2.24
5833 6150 6.888632 ACATCTTGCAGGAGAGAATGTTAAAT 59.111 34.615 4.35 0.00 0.00 1.40
5934 6251 4.024977 CCAACCTGCTAAAATTGTGCAAAC 60.025 41.667 0.00 0.00 36.22 2.93
6031 6348 4.978580 GCAGAATCAGAACAACCAAAAGAC 59.021 41.667 0.00 0.00 0.00 3.01
6045 6362 5.313712 ACCAAAAGACGTGAAGGATAACAT 58.686 37.500 0.00 0.00 0.00 2.71
6075 6392 1.376812 CACCTGCCGTTACCCCTTC 60.377 63.158 0.00 0.00 0.00 3.46
6191 6508 4.917385 TCAGGCTGGTGCTAAAAATAAGA 58.083 39.130 15.73 0.00 39.59 2.10
6202 6519 7.308589 GGTGCTAAAAATAAGAGCAGTGAAGAA 60.309 37.037 0.00 0.00 46.39 2.52
6253 6570 3.385193 AACCCCTTTGCAAAATCTTCG 57.615 42.857 13.84 0.00 0.00 3.79
6395 6712 1.909302 GACCTGGAGGATGGAAACTGA 59.091 52.381 0.00 0.00 38.94 3.41
6515 6832 8.812972 TCAGTTTACTTTGTAGTCTGGATGTAT 58.187 33.333 0.00 0.00 35.78 2.29
6609 6926 2.162408 GGTAGCACCTTCAGCATTTGTC 59.838 50.000 0.00 0.00 34.73 3.18
6616 6933 5.507985 GCACCTTCAGCATTTGTCTTTAAGT 60.508 40.000 0.00 0.00 0.00 2.24
6715 7037 7.335627 CCCTGAACTGGTTTGTTAGATATGTA 58.664 38.462 0.00 0.00 0.00 2.29
6741 7066 9.623000 AGTAAACCATTGTTTTAAGTAGTGAGT 57.377 29.630 0.00 0.00 41.92 3.41
6839 7164 8.410912 GTTTAACCCTCTAAACTCATGTTTGTT 58.589 33.333 4.64 3.08 45.01 2.83
6884 7209 5.532779 GGAGTCAAAAGATTTGTCTCACCTT 59.467 40.000 22.26 0.00 36.68 3.50
6939 9897 5.452302 GCGGAAAAATGATGAATAAGTCACG 59.548 40.000 0.00 0.00 39.72 4.35
6971 9929 2.098293 GGCAACATAGGCCGACTTG 58.902 57.895 0.00 0.00 42.39 3.16
7054 10053 1.003003 TGATGAAGACACGCCATCCAA 59.997 47.619 0.00 0.00 36.70 3.53
7068 10067 4.207019 CGCCATCCAAAAGAAAAATATCGC 59.793 41.667 0.00 0.00 0.00 4.58
7093 10092 2.679837 GGTTGTCATCAAGCGTCATCAT 59.320 45.455 0.00 0.00 41.15 2.45
7127 10126 3.244422 ACGACTCCTGCTTAACCATTGAA 60.244 43.478 0.00 0.00 0.00 2.69
7227 10226 4.082895 GGCGACTAGACAACTCTAACTCAA 60.083 45.833 0.00 0.00 0.00 3.02
7233 10232 3.318275 AGACAACTCTAACTCAAGCGACA 59.682 43.478 0.00 0.00 0.00 4.35
7259 10258 1.221414 GCAAGAGACAAGCGTTGAGT 58.779 50.000 5.01 0.00 0.00 3.41
7276 10275 0.038455 AGTCTGTGTCGACTAGGCCT 59.962 55.000 17.92 11.78 42.19 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.425114 CCTAAGCATAGCATAAAAGATCGTGT 59.575 38.462 0.00 0.00 0.00 4.49
1 2 6.646653 TCCTAAGCATAGCATAAAAGATCGTG 59.353 38.462 0.00 0.00 0.00 4.35
2 3 6.759272 TCCTAAGCATAGCATAAAAGATCGT 58.241 36.000 0.00 0.00 0.00 3.73
3 4 7.840342 ATCCTAAGCATAGCATAAAAGATCG 57.160 36.000 0.00 0.00 0.00 3.69
4 5 8.457261 CCAATCCTAAGCATAGCATAAAAGATC 58.543 37.037 0.00 0.00 0.00 2.75
5 6 7.395489 CCCAATCCTAAGCATAGCATAAAAGAT 59.605 37.037 0.00 0.00 0.00 2.40
6 7 6.716628 CCCAATCCTAAGCATAGCATAAAAGA 59.283 38.462 0.00 0.00 0.00 2.52
7 8 6.491403 ACCCAATCCTAAGCATAGCATAAAAG 59.509 38.462 0.00 0.00 0.00 2.27
8 9 6.372931 ACCCAATCCTAAGCATAGCATAAAA 58.627 36.000 0.00 0.00 0.00 1.52
9 10 5.952387 ACCCAATCCTAAGCATAGCATAAA 58.048 37.500 0.00 0.00 0.00 1.40
10 11 5.310594 AGACCCAATCCTAAGCATAGCATAA 59.689 40.000 0.00 0.00 0.00 1.90
11 12 4.846367 AGACCCAATCCTAAGCATAGCATA 59.154 41.667 0.00 0.00 0.00 3.14
12 13 3.654806 AGACCCAATCCTAAGCATAGCAT 59.345 43.478 0.00 0.00 0.00 3.79
13 14 3.048600 AGACCCAATCCTAAGCATAGCA 58.951 45.455 0.00 0.00 0.00 3.49
14 15 3.778954 AGACCCAATCCTAAGCATAGC 57.221 47.619 0.00 0.00 0.00 2.97
15 16 5.041191 ACAAGACCCAATCCTAAGCATAG 57.959 43.478 0.00 0.00 0.00 2.23
16 17 4.141482 GGACAAGACCCAATCCTAAGCATA 60.141 45.833 0.00 0.00 0.00 3.14
17 18 3.372025 GGACAAGACCCAATCCTAAGCAT 60.372 47.826 0.00 0.00 0.00 3.79
18 19 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
19 20 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
20 21 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
21 22 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
22 23 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
23 24 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
24 25 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
25 26 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
26 27 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
27 28 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
28 29 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
29 30 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
30 31 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
31 32 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
32 33 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
33 34 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
34 35 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
35 36 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
36 37 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
37 38 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
45 46 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
46 47 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
47 48 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
48 49 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
49 50 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
50 51 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
51 52 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
52 53 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
53 54 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
54 55 7.603784 TCATTGATAACGGGATCACATCATTAG 59.396 37.037 0.00 0.00 35.56 1.73
55 56 7.387673 GTCATTGATAACGGGATCACATCATTA 59.612 37.037 0.00 0.00 35.56 1.90
56 57 6.205464 GTCATTGATAACGGGATCACATCATT 59.795 38.462 0.00 0.00 35.56 2.57
57 58 5.702670 GTCATTGATAACGGGATCACATCAT 59.297 40.000 0.00 0.00 35.56 2.45
58 59 5.056480 GTCATTGATAACGGGATCACATCA 58.944 41.667 0.00 0.00 35.56 3.07
59 60 5.056480 TGTCATTGATAACGGGATCACATC 58.944 41.667 0.00 0.00 35.56 3.06
60 61 5.034852 TGTCATTGATAACGGGATCACAT 57.965 39.130 0.00 0.00 35.56 3.21
61 62 4.479786 TGTCATTGATAACGGGATCACA 57.520 40.909 0.00 0.00 35.56 3.58
62 63 4.452455 GGATGTCATTGATAACGGGATCAC 59.548 45.833 0.00 0.00 35.56 3.06
63 64 4.102367 TGGATGTCATTGATAACGGGATCA 59.898 41.667 0.00 0.00 33.96 2.92
64 65 4.641396 TGGATGTCATTGATAACGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
65 66 4.705110 TGGATGTCATTGATAACGGGAT 57.295 40.909 0.00 0.00 0.00 3.85
66 67 4.495690 TTGGATGTCATTGATAACGGGA 57.504 40.909 0.00 0.00 0.00 5.14
67 68 4.580167 ACATTGGATGTCATTGATAACGGG 59.420 41.667 0.00 0.00 39.92 5.28
68 69 5.756195 ACATTGGATGTCATTGATAACGG 57.244 39.130 0.00 0.00 39.92 4.44
81 82 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
82 83 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
83 84 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
84 85 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
85 86 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
86 87 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
87 88 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
88 89 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
89 90 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
90 91 3.843619 TGTCATGGTTTCCTGACTATGGA 59.156 43.478 14.36 0.00 41.83 3.41
91 92 4.220693 TGTCATGGTTTCCTGACTATGG 57.779 45.455 14.36 0.00 41.83 2.74
92 93 6.037940 CAGATTGTCATGGTTTCCTGACTATG 59.962 42.308 14.11 0.00 41.83 2.23
93 94 6.118170 CAGATTGTCATGGTTTCCTGACTAT 58.882 40.000 14.36 12.86 41.83 2.12
94 95 5.013079 ACAGATTGTCATGGTTTCCTGACTA 59.987 40.000 14.36 10.10 41.83 2.59
95 96 4.202503 ACAGATTGTCATGGTTTCCTGACT 60.203 41.667 14.36 0.00 41.83 3.41
96 97 4.074970 ACAGATTGTCATGGTTTCCTGAC 58.925 43.478 10.65 9.64 41.69 3.51
97 98 4.371624 ACAGATTGTCATGGTTTCCTGA 57.628 40.909 10.65 0.00 0.00 3.86
98 99 4.520111 TCAACAGATTGTCATGGTTTCCTG 59.480 41.667 0.00 0.00 37.11 3.86
99 100 4.728772 TCAACAGATTGTCATGGTTTCCT 58.271 39.130 0.00 0.00 37.11 3.36
100 101 5.183713 TGATCAACAGATTGTCATGGTTTCC 59.816 40.000 0.00 0.00 37.11 3.13
101 102 6.258230 TGATCAACAGATTGTCATGGTTTC 57.742 37.500 0.00 0.00 37.11 2.78
102 103 6.449698 GTTGATCAACAGATTGTCATGGTTT 58.550 36.000 29.43 0.00 40.84 3.27
103 104 5.335113 CGTTGATCAACAGATTGTCATGGTT 60.335 40.000 32.06 0.00 41.20 3.67
104 105 4.154737 CGTTGATCAACAGATTGTCATGGT 59.845 41.667 32.06 0.00 41.20 3.55
105 106 4.392754 TCGTTGATCAACAGATTGTCATGG 59.607 41.667 32.06 15.04 41.20 3.66
106 107 5.535043 TCGTTGATCAACAGATTGTCATG 57.465 39.130 32.06 15.48 41.20 3.07
107 108 4.093998 GCTCGTTGATCAACAGATTGTCAT 59.906 41.667 32.06 0.00 41.20 3.06
108 109 3.433274 GCTCGTTGATCAACAGATTGTCA 59.567 43.478 32.06 11.38 41.20 3.58
109 110 3.681897 AGCTCGTTGATCAACAGATTGTC 59.318 43.478 32.06 18.91 41.20 3.18
110 111 3.668447 AGCTCGTTGATCAACAGATTGT 58.332 40.909 32.06 16.47 41.20 2.71
111 112 4.867047 ACTAGCTCGTTGATCAACAGATTG 59.133 41.667 32.06 26.36 41.20 2.67
112 113 5.078411 ACTAGCTCGTTGATCAACAGATT 57.922 39.130 32.06 21.85 41.20 2.40
113 114 4.158579 TGACTAGCTCGTTGATCAACAGAT 59.841 41.667 32.06 26.87 41.20 2.90
114 115 3.506067 TGACTAGCTCGTTGATCAACAGA 59.494 43.478 32.06 26.81 41.20 3.41
115 116 3.838120 TGACTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
116 117 3.934457 TGACTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
117 118 4.238514 AGTTGACTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 43.94 3.18
118 119 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
119 120 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
120 121 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
121 122 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
122 123 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
123 124 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
124 125 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
125 126 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
126 127 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
127 128 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
128 129 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
129 130 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
130 131 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
131 132 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
132 133 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
133 134 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
134 135 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
135 136 4.098196 GTGTCCCTAGTAAGCCTCTAGTTG 59.902 50.000 0.00 0.00 34.72 3.16
136 137 4.279982 GTGTCCCTAGTAAGCCTCTAGTT 58.720 47.826 0.00 0.00 34.72 2.24
137 138 3.684981 CGTGTCCCTAGTAAGCCTCTAGT 60.685 52.174 0.00 0.00 34.72 2.57
138 139 2.879646 CGTGTCCCTAGTAAGCCTCTAG 59.120 54.545 0.00 0.00 35.86 2.43
139 140 2.240667 ACGTGTCCCTAGTAAGCCTCTA 59.759 50.000 0.00 0.00 0.00 2.43
140 141 1.005687 ACGTGTCCCTAGTAAGCCTCT 59.994 52.381 0.00 0.00 0.00 3.69
141 142 1.472188 ACGTGTCCCTAGTAAGCCTC 58.528 55.000 0.00 0.00 0.00 4.70
142 143 1.549170 CAACGTGTCCCTAGTAAGCCT 59.451 52.381 0.00 0.00 0.00 4.58
143 144 1.274447 ACAACGTGTCCCTAGTAAGCC 59.726 52.381 0.00 0.00 0.00 4.35
144 145 2.334838 CACAACGTGTCCCTAGTAAGC 58.665 52.381 0.00 0.00 0.00 3.09
145 146 2.298163 ACCACAACGTGTCCCTAGTAAG 59.702 50.000 0.00 0.00 0.00 2.34
146 147 2.297033 GACCACAACGTGTCCCTAGTAA 59.703 50.000 0.00 0.00 0.00 2.24
147 148 1.888512 GACCACAACGTGTCCCTAGTA 59.111 52.381 0.00 0.00 0.00 1.82
148 149 0.677842 GACCACAACGTGTCCCTAGT 59.322 55.000 0.00 0.00 0.00 2.57
149 150 0.966920 AGACCACAACGTGTCCCTAG 59.033 55.000 0.00 0.00 0.00 3.02
150 151 2.291209 TAGACCACAACGTGTCCCTA 57.709 50.000 0.00 0.00 0.00 3.53
151 152 1.275291 CATAGACCACAACGTGTCCCT 59.725 52.381 0.00 0.00 0.00 4.20
152 153 1.001633 ACATAGACCACAACGTGTCCC 59.998 52.381 0.00 0.00 0.00 4.46
153 154 2.450609 ACATAGACCACAACGTGTCC 57.549 50.000 0.00 0.00 0.00 4.02
154 155 5.061808 GTGAATACATAGACCACAACGTGTC 59.938 44.000 0.00 0.00 0.00 3.67
155 156 4.927425 GTGAATACATAGACCACAACGTGT 59.073 41.667 0.00 0.00 0.00 4.49
156 157 4.926832 TGTGAATACATAGACCACAACGTG 59.073 41.667 0.00 0.00 35.16 4.49
157 158 4.927425 GTGTGAATACATAGACCACAACGT 59.073 41.667 0.00 0.00 39.13 3.99
158 159 4.926832 TGTGTGAATACATAGACCACAACG 59.073 41.667 0.00 0.00 39.13 4.10
159 160 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
160 161 6.472016 ACATGTGTGAATACATAGACCACAA 58.528 36.000 0.00 0.00 39.17 3.33
161 162 6.048732 ACATGTGTGAATACATAGACCACA 57.951 37.500 0.00 0.00 39.17 4.17
162 163 8.662781 AATACATGTGTGAATACATAGACCAC 57.337 34.615 9.11 0.00 39.17 4.16
163 164 9.758651 GTAATACATGTGTGAATACATAGACCA 57.241 33.333 9.11 0.00 39.17 4.02
164 165 8.912658 CGTAATACATGTGTGAATACATAGACC 58.087 37.037 9.11 0.00 39.17 3.85
165 166 9.673454 TCGTAATACATGTGTGAATACATAGAC 57.327 33.333 9.11 0.00 39.17 2.59
170 171 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
171 172 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
172 173 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
173 174 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
174 175 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
175 176 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
176 177 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
177 178 4.807304 GTCCGGAAATCGTAATACATGTGT 59.193 41.667 5.23 0.00 37.11 3.72
178 179 4.806775 TGTCCGGAAATCGTAATACATGTG 59.193 41.667 5.23 0.00 37.11 3.21
179 180 5.013568 TGTCCGGAAATCGTAATACATGT 57.986 39.130 5.23 2.69 37.11 3.21
180 181 5.977171 TTGTCCGGAAATCGTAATACATG 57.023 39.130 5.23 0.00 37.11 3.21
181 182 7.211573 TGTATTGTCCGGAAATCGTAATACAT 58.788 34.615 5.23 0.00 39.85 2.29
182 183 6.571605 TGTATTGTCCGGAAATCGTAATACA 58.428 36.000 5.23 16.25 40.93 2.29
183 184 7.467557 TTGTATTGTCCGGAAATCGTAATAC 57.532 36.000 5.23 14.10 37.96 1.89
184 185 8.665643 AATTGTATTGTCCGGAAATCGTAATA 57.334 30.769 5.23 2.30 37.11 0.98
185 186 7.562454 AATTGTATTGTCCGGAAATCGTAAT 57.438 32.000 5.23 0.74 37.11 1.89
186 187 6.988622 AATTGTATTGTCCGGAAATCGTAA 57.011 33.333 5.23 0.00 37.11 3.18
187 188 9.414295 CTATAATTGTATTGTCCGGAAATCGTA 57.586 33.333 5.23 0.00 37.11 3.43
188 189 7.095355 GCTATAATTGTATTGTCCGGAAATCGT 60.095 37.037 5.23 0.00 37.11 3.73
189 190 7.095397 TGCTATAATTGTATTGTCCGGAAATCG 60.095 37.037 5.23 0.00 38.88 3.34
190 191 8.094798 TGCTATAATTGTATTGTCCGGAAATC 57.905 34.615 5.23 0.00 0.00 2.17
191 192 8.514594 CATGCTATAATTGTATTGTCCGGAAAT 58.485 33.333 5.23 11.20 0.00 2.17
192 193 7.717436 TCATGCTATAATTGTATTGTCCGGAAA 59.283 33.333 5.23 0.00 0.00 3.13
193 194 7.220740 TCATGCTATAATTGTATTGTCCGGAA 58.779 34.615 5.23 0.00 0.00 4.30
194 195 6.764379 TCATGCTATAATTGTATTGTCCGGA 58.236 36.000 0.00 0.00 0.00 5.14
195 196 7.041440 TGTTCATGCTATAATTGTATTGTCCGG 60.041 37.037 0.00 0.00 0.00 5.14
196 197 7.860613 TGTTCATGCTATAATTGTATTGTCCG 58.139 34.615 0.00 0.00 0.00 4.79
210 211 8.978874 TGGTAATTGTCTATTGTTCATGCTAT 57.021 30.769 0.00 0.00 0.00 2.97
211 212 8.839343 CATGGTAATTGTCTATTGTTCATGCTA 58.161 33.333 0.00 0.00 30.41 3.49
212 213 7.557358 TCATGGTAATTGTCTATTGTTCATGCT 59.443 33.333 0.00 0.00 33.81 3.79
213 214 7.706159 TCATGGTAATTGTCTATTGTTCATGC 58.294 34.615 0.00 0.00 33.81 4.06
214 215 9.507280 GTTCATGGTAATTGTCTATTGTTCATG 57.493 33.333 0.00 0.00 34.37 3.07
215 216 9.241919 TGTTCATGGTAATTGTCTATTGTTCAT 57.758 29.630 0.00 0.00 0.00 2.57
216 217 8.628630 TGTTCATGGTAATTGTCTATTGTTCA 57.371 30.769 0.00 0.00 0.00 3.18
217 218 9.906660 TTTGTTCATGGTAATTGTCTATTGTTC 57.093 29.630 0.00 0.00 0.00 3.18
218 219 9.912634 CTTTGTTCATGGTAATTGTCTATTGTT 57.087 29.630 0.00 0.00 0.00 2.83
219 220 9.295825 TCTTTGTTCATGGTAATTGTCTATTGT 57.704 29.630 0.00 0.00 0.00 2.71
254 255 9.533831 CCCTAGAGGCAATAATAAATGGTTATT 57.466 33.333 0.00 0.00 41.71 1.40
272 273 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
273 274 5.954296 CATGTTGGAAATATGCCCTAGAG 57.046 43.478 0.00 0.00 38.58 2.43
297 298 2.868583 GCATCGAGCAATGTCATGTAGT 59.131 45.455 0.00 0.00 44.79 2.73
410 411 4.025145 GTCACCGAGATAAAAATTAGGGCG 60.025 45.833 0.00 0.00 0.00 6.13
437 444 3.684305 CGACATGTCCATACAAGAAGCAA 59.316 43.478 20.03 0.00 39.58 3.91
518 525 8.836268 ATGTAATTAGTTGGACGAACACTTAA 57.164 30.769 3.04 0.00 36.98 1.85
550 557 9.965824 CTATACCTTTAATTCGATTTTGCCATT 57.034 29.630 0.00 0.00 0.00 3.16
562 569 7.272978 TGAGAGTGCACCTATACCTTTAATTC 58.727 38.462 14.63 0.00 0.00 2.17
571 578 4.204012 AGAGACTGAGAGTGCACCTATAC 58.796 47.826 14.63 1.73 0.00 1.47
775 786 2.328099 CCTCGCGGAAAGCTTGCTT 61.328 57.895 6.13 1.55 45.59 3.91
778 789 1.355066 GACTCCTCGCGGAAAGCTTG 61.355 60.000 6.13 0.00 45.59 4.01
852 863 1.977188 CGCGAAATTTCAGGGGTTTC 58.023 50.000 17.99 0.00 0.00 2.78
860 871 1.225376 ACGAGTGGCGCGAAATTTCA 61.225 50.000 12.10 0.00 46.04 2.69
888 899 4.670621 GGCGTTTTATGTTTCGATATGCTG 59.329 41.667 0.00 0.00 0.00 4.41
933 945 1.378514 CTGGTGGGGGATTTCGTGG 60.379 63.158 0.00 0.00 0.00 4.94
946 958 1.239968 GCTTCCTTGGTGAGCTGGTG 61.240 60.000 0.00 0.00 33.72 4.17
947 959 1.073897 GCTTCCTTGGTGAGCTGGT 59.926 57.895 0.00 0.00 33.72 4.00
961 974 2.881352 CTTCGCGTCCGAGGCTTC 60.881 66.667 5.77 0.00 45.35 3.86
1120 1135 1.115326 TCGTGGATCAGGATGGCGAT 61.115 55.000 0.00 0.00 36.16 4.58
1201 1216 3.771160 GTGGAGCCGGATCGTGGT 61.771 66.667 14.60 0.00 0.00 4.16
1278 1293 3.604629 ACGGAGTGGTCGATGGAG 58.395 61.111 0.00 0.00 42.51 3.86
1391 1411 4.261801 TGGAAAGAAATCCGGAGACATTC 58.738 43.478 11.34 11.70 42.76 2.67
1402 1422 1.128692 CGTGCCGTCTGGAAAGAAATC 59.871 52.381 0.00 0.00 37.49 2.17
1725 1745 3.650942 TCCAACACAGGGTATTCTTCACT 59.349 43.478 0.00 0.00 0.00 3.41
1815 1835 0.527817 GTGTGAATACCTCCTCCGCG 60.528 60.000 0.00 0.00 0.00 6.46
2040 2060 5.644636 CACTGATTCCCAAATCCCAAATTTG 59.355 40.000 11.40 11.40 40.57 2.32
2127 2147 6.859420 TCTTCATCTTCGTCATCAAACAAA 57.141 33.333 0.00 0.00 0.00 2.83
2169 2189 3.350833 GACCTCATCATCAAAACCAGCT 58.649 45.455 0.00 0.00 0.00 4.24
2188 2208 4.690748 TGAATCACCAAGACTTTCATCGAC 59.309 41.667 0.00 0.00 0.00 4.20
2232 2252 5.634118 TCAAATGTGGTCTTTCTCCTCAAT 58.366 37.500 0.00 0.00 33.25 2.57
2234 2254 4.705110 TCAAATGTGGTCTTTCTCCTCA 57.295 40.909 0.00 0.00 33.88 3.86
2235 2255 5.123027 GTCATCAAATGTGGTCTTTCTCCTC 59.877 44.000 0.00 0.00 0.00 3.71
2245 2265 3.765381 TCATGTGGTCATCAAATGTGGT 58.235 40.909 0.00 0.00 40.97 4.16
2283 2303 6.439692 ACTGCATCTCATGTATCATATCCTCA 59.560 38.462 0.00 0.00 0.00 3.86
2298 2318 0.978907 TCTTGCCTGACTGCATCTCA 59.021 50.000 0.00 0.00 41.70 3.27
2596 2619 1.000163 GTCACAACTTCGGCAGAGAGA 60.000 52.381 3.82 0.00 0.00 3.10
2619 2642 9.136323 GGAAGTCAACCTGGAAAATGATTATAT 57.864 33.333 0.00 0.00 0.00 0.86
2752 2775 7.105588 ACATAAGAGTGCTCATATTGTTGTCA 58.894 34.615 1.82 0.00 0.00 3.58
2834 2857 5.689383 TCTTGAAGGTGCAGAACATTTAC 57.311 39.130 0.00 0.00 31.65 2.01
3094 3119 5.297776 CCTGGCTAACTCCACAAGAATAATG 59.702 44.000 0.00 0.00 31.74 1.90
3111 3137 5.250774 ACTTTCAGATAAAGGAACCTGGCTA 59.749 40.000 0.00 0.00 0.00 3.93
3151 3177 2.102252 TGTTCATTGGTGGTTTTGAGCC 59.898 45.455 0.00 0.00 0.00 4.70
3192 3218 3.309961 TCAGAAAGCTCTAGTGCAGTG 57.690 47.619 18.36 9.66 34.99 3.66
3193 3219 4.502962 GAATCAGAAAGCTCTAGTGCAGT 58.497 43.478 18.36 0.00 34.99 4.40
3194 3220 3.870419 GGAATCAGAAAGCTCTAGTGCAG 59.130 47.826 18.36 3.79 34.99 4.41
3195 3221 3.517100 AGGAATCAGAAAGCTCTAGTGCA 59.483 43.478 18.36 0.00 34.99 4.57
3196 3222 4.135747 AGGAATCAGAAAGCTCTAGTGC 57.864 45.455 8.76 8.76 0.00 4.40
3283 3309 3.552699 CAGTGCACTGATGGTTTGTTTTG 59.447 43.478 38.12 9.72 46.59 2.44
3300 3326 1.869767 CTGTGAACCAAGAGTCAGTGC 59.130 52.381 0.00 0.00 0.00 4.40
3406 3436 4.910195 AGATGGCAAACACAGATTACAGA 58.090 39.130 0.00 0.00 0.00 3.41
3458 3689 8.482943 ACACTACAGTAATGTTCCAATATAGCA 58.517 33.333 0.00 0.00 0.00 3.49
3574 3807 1.867233 GGTGCAGTACTTGACAGTGTG 59.133 52.381 0.00 0.00 34.06 3.82
3601 3834 5.986135 ACTTGAGCTCAGCTTATTATAACCG 59.014 40.000 17.43 0.00 39.88 4.44
3680 3913 3.460672 ATGGGCGCCACATAGACGG 62.461 63.158 30.85 0.00 35.80 4.79
3713 3946 7.930865 GCCTATATATTGAGATAGGAAGCAAGG 59.069 40.741 11.88 0.00 46.19 3.61
4056 4362 3.244665 TGACTGAAAGGATGTGCATCTGT 60.245 43.478 11.39 0.00 39.30 3.41
4065 4371 2.038952 TGGACCACTGACTGAAAGGATG 59.961 50.000 0.00 0.00 39.30 3.51
4107 4413 1.233019 CAATTGCTAGCTGATCCCCG 58.767 55.000 17.23 0.00 0.00 5.73
4131 4437 1.952296 GGTAGGCAATCTGAAGCATGG 59.048 52.381 7.59 0.00 0.00 3.66
4192 4498 9.565213 GCTATCAATATTACATCATCAAAAGGC 57.435 33.333 0.00 0.00 0.00 4.35
4276 4583 7.987458 TCTCATAGAGGATACAAATGTGGAAAC 59.013 37.037 0.00 0.00 41.41 2.78
4281 4588 8.200120 TCAGTTCTCATAGAGGATACAAATGTG 58.800 37.037 0.00 0.00 41.41 3.21
4403 4715 1.617804 CCAGACATTGATTGTGCCCCT 60.618 52.381 0.00 0.00 39.18 4.79
4421 4733 0.033504 GAGTCAAGACAAGGCGACCA 59.966 55.000 2.72 0.00 0.00 4.02
4603 4915 1.613437 CCACCAAACTGAGCGGAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
4677 4989 2.884639 AGTGTGCTTCAGCGGTAATTTT 59.115 40.909 0.00 0.00 45.83 1.82
4709 5021 5.241506 TGCCTTGGTTGAACTGAAATTAGAG 59.758 40.000 0.00 0.00 0.00 2.43
4941 5253 6.739331 ACCCAATTCTTCATTAAACACCAA 57.261 33.333 0.00 0.00 0.00 3.67
4943 5255 8.364894 ACTTTACCCAATTCTTCATTAAACACC 58.635 33.333 0.00 0.00 0.00 4.16
5076 5390 2.791383 TGGTGTGTTGCTTTATGTGC 57.209 45.000 0.00 0.00 0.00 4.57
5156 5470 5.311265 ACATGAGTCAAAGAGCAGATCAAA 58.689 37.500 0.00 0.00 0.00 2.69
5316 5630 6.554334 TTTAAGTTCGAGAAAGGAACATGG 57.446 37.500 0.00 0.00 44.78 3.66
5577 5894 7.444487 ACCTGTGGAAAAGTAAGAACATAAGAC 59.556 37.037 0.00 0.00 0.00 3.01
5615 5932 2.047844 GCAAGCTCAGTGGCTCGA 60.048 61.111 6.58 0.00 42.24 4.04
5868 6185 0.725117 GTTTGTACTGGCCGGATTCG 59.275 55.000 21.41 0.00 0.00 3.34
5934 6251 1.834263 CCTCCTCCAAGTTACCTCCAG 59.166 57.143 0.00 0.00 0.00 3.86
6015 6332 4.342772 CTTCACGTCTTTTGGTTGTTCTG 58.657 43.478 0.00 0.00 0.00 3.02
6031 6348 4.082787 ACCTTTGCAATGTTATCCTTCACG 60.083 41.667 0.00 0.00 0.00 4.35
6064 6381 0.323629 TCTTGGCTGAAGGGGTAACG 59.676 55.000 0.00 0.00 37.60 3.18
6075 6392 5.185635 TCATTTTTCTTGGGTATCTTGGCTG 59.814 40.000 0.00 0.00 0.00 4.85
6147 6464 4.439305 TCAATGCCTCCTTTCAAAATCG 57.561 40.909 0.00 0.00 0.00 3.34
6191 6508 0.886490 CGGTTGCCTTCTTCACTGCT 60.886 55.000 0.00 0.00 0.00 4.24
6202 6519 3.394836 GGCTCTCCTCGGTTGCCT 61.395 66.667 0.00 0.00 40.36 4.75
6253 6570 5.335191 GGATGATGACTGTTCTTTGTTGGAC 60.335 44.000 0.00 0.00 0.00 4.02
6395 6712 6.229936 TGTTAGTTAAAGGTGACTGACTGT 57.770 37.500 0.00 0.00 42.68 3.55
6515 6832 7.708998 AGCTACAAAGTTTATTGTCCGAAAAA 58.291 30.769 0.00 0.00 42.33 1.94
6600 6917 4.916983 TGTGCACTTAAAGACAAATGCT 57.083 36.364 19.41 0.00 34.18 3.79
6715 7037 9.623000 ACTCACTACTTAAAACAATGGTTTACT 57.377 29.630 2.54 0.00 46.20 2.24
6737 7062 7.395190 TTTACGGCTGATTAGTTAGTACTCA 57.605 36.000 0.00 0.00 35.78 3.41
6738 7063 9.392021 GTATTTACGGCTGATTAGTTAGTACTC 57.608 37.037 0.00 0.00 35.78 2.59
6739 7064 9.129532 AGTATTTACGGCTGATTAGTTAGTACT 57.870 33.333 0.00 0.00 38.44 2.73
6740 7065 9.392021 GAGTATTTACGGCTGATTAGTTAGTAC 57.608 37.037 0.00 0.00 0.00 2.73
6741 7066 9.123902 TGAGTATTTACGGCTGATTAGTTAGTA 57.876 33.333 0.00 0.00 0.00 1.82
6794 7119 9.106070 GGTTAAACAAACTACATATGGAGTAGG 57.894 37.037 21.11 17.20 42.47 3.18
6853 7178 9.965824 GAGACAAATCTTTTGACTCCATTTTAA 57.034 29.630 16.38 0.00 35.98 1.52
6884 7209 7.938140 AGCAGGCAATTCTACTTTATTAACA 57.062 32.000 0.00 0.00 0.00 2.41
6924 9881 2.737359 GCCCGTCGTGACTTATTCATCA 60.737 50.000 0.00 0.00 36.32 3.07
6926 9883 1.472728 GGCCCGTCGTGACTTATTCAT 60.473 52.381 0.00 0.00 36.32 2.57
6971 9929 2.292267 CATGACTTCATGTGGGTAGCC 58.708 52.381 10.57 3.29 46.40 3.93
6998 9995 2.295885 CAAGACTTCTGGATGGGCATC 58.704 52.381 0.00 0.00 37.11 3.91
7054 10053 2.730382 ACCCCGGCGATATTTTTCTTT 58.270 42.857 9.30 0.00 0.00 2.52
7068 10067 2.398554 CGCTTGATGACAACCCCGG 61.399 63.158 0.00 0.00 32.27 5.73
7093 10092 2.847234 AGTCGTTGGCTGGTGGGA 60.847 61.111 0.00 0.00 0.00 4.37
7127 10126 0.905337 AGGGGCTTTGCTAGTCGTCT 60.905 55.000 0.00 0.00 0.00 4.18
7233 10232 1.230324 GCTTGTCTCTTGCGAGGTTT 58.770 50.000 0.00 0.00 37.86 3.27
7259 10258 0.888619 CAAGGCCTAGTCGACACAGA 59.111 55.000 19.50 0.00 0.00 3.41
7276 10275 1.815613 CATATGGGTGTTCGGTTGCAA 59.184 47.619 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.