Multiple sequence alignment - TraesCS5D01G170700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G170700 chr5D 100.000 2579 0 0 1 2579 267764978 267762400 0.000000e+00 4763.0
1 TraesCS5D01G170700 chr5D 100.000 342 0 0 2890 3231 267762089 267761748 1.640000e-177 632.0
2 TraesCS5D01G170700 chr5D 82.328 232 19 9 1 232 267765640 267765849 7.120000e-42 182.0
3 TraesCS5D01G170700 chr5B 93.168 2386 99 24 246 2579 302755650 302753277 0.000000e+00 3445.0
4 TraesCS5D01G170700 chr5B 86.804 341 39 5 2890 3227 302753197 302752860 3.040000e-100 375.0
5 TraesCS5D01G170700 chr5B 85.423 343 22 15 245 563 302756098 302755760 6.680000e-87 331.0
6 TraesCS5D01G170700 chr5A 94.739 2091 71 19 503 2579 355073200 355071135 0.000000e+00 3216.0
7 TraesCS5D01G170700 chr5A 85.135 296 20 10 244 521 355082641 355082352 6.820000e-72 281.0
8 TraesCS5D01G170700 chr5A 82.759 290 30 11 2890 3170 355070602 355070324 1.160000e-59 241.0
9 TraesCS5D01G170700 chr2D 89.024 82 8 1 163 243 604062031 604061950 2.050000e-17 100.0
10 TraesCS5D01G170700 chr1B 89.744 78 7 1 163 240 623387464 623387540 7.380000e-17 99.0
11 TraesCS5D01G170700 chr6B 86.420 81 10 1 5 85 697044442 697044363 1.600000e-13 87.9
12 TraesCS5D01G170700 chr7B 85.366 82 10 2 5 85 323844771 323844691 2.070000e-12 84.2
13 TraesCS5D01G170700 chr3D 83.908 87 11 3 1 85 135539880 135539965 2.670000e-11 80.5
14 TraesCS5D01G170700 chr3D 84.146 82 11 2 5 85 586564275 586564355 9.610000e-11 78.7
15 TraesCS5D01G170700 chr3B 85.000 80 10 2 7 85 72474961 72475039 2.670000e-11 80.5
16 TraesCS5D01G170700 chr6A 84.146 82 11 2 5 85 510971990 510972070 9.610000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G170700 chr5D 267761748 267764978 3230 True 2697.500000 4763 100.000 1 3231 2 chr5D.!!$R1 3230
1 TraesCS5D01G170700 chr5B 302752860 302756098 3238 True 1383.666667 3445 88.465 245 3227 3 chr5B.!!$R1 2982
2 TraesCS5D01G170700 chr5A 355070324 355073200 2876 True 1728.500000 3216 88.749 503 3170 2 chr5A.!!$R2 2667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.030705 ATAGGCTTCCTCCTGGCTGA 60.031 55.0 0.0 0.0 39.45 4.26 F
299 747 0.179045 ATGTATCTTGCCTCGGGTGC 60.179 55.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1976 1.522580 GCCCTCGTTGCTCTCCATC 60.523 63.158 0.0 0.0 0.0 3.51 R
2295 2791 1.594862 CGGCAAATTAAGGAGAGCGAG 59.405 52.381 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.160137 CCTATCGGCCAGCAATAAGC 58.840 55.000 2.24 0.00 46.19 3.09
34 35 6.846325 GCAATAAGCCGACTAAGACTAATT 57.154 37.500 0.00 0.00 37.23 1.40
35 36 6.650372 GCAATAAGCCGACTAAGACTAATTG 58.350 40.000 0.00 0.00 37.23 2.32
36 37 6.292919 GCAATAAGCCGACTAAGACTAATTGG 60.293 42.308 0.00 0.00 37.23 3.16
37 38 3.180891 AGCCGACTAAGACTAATTGGC 57.819 47.619 4.32 4.32 41.50 4.52
38 39 2.766828 AGCCGACTAAGACTAATTGGCT 59.233 45.455 8.03 8.03 46.21 4.75
40 41 4.690122 GCCGACTAAGACTAATTGGCTTA 58.310 43.478 5.04 4.00 43.44 3.09
41 42 4.507021 GCCGACTAAGACTAATTGGCTTAC 59.493 45.833 5.04 0.00 43.44 2.34
42 43 5.681695 GCCGACTAAGACTAATTGGCTTACT 60.682 44.000 5.04 0.00 43.44 2.24
43 44 6.460676 GCCGACTAAGACTAATTGGCTTACTA 60.461 42.308 5.04 0.00 43.44 1.82
44 45 6.916932 CCGACTAAGACTAATTGGCTTACTAC 59.083 42.308 0.00 0.00 43.44 2.73
45 46 7.415989 CCGACTAAGACTAATTGGCTTACTACA 60.416 40.741 0.00 0.00 43.44 2.74
46 47 7.972277 CGACTAAGACTAATTGGCTTACTACAA 59.028 37.037 0.00 0.00 43.44 2.41
47 48 9.303537 GACTAAGACTAATTGGCTTACTACAAG 57.696 37.037 0.00 0.00 43.44 3.16
48 49 6.986904 AAGACTAATTGGCTTACTACAAGC 57.013 37.500 0.31 0.31 43.44 4.01
58 59 5.736486 GCTTACTACAAGCCAATTAGTCC 57.264 43.478 0.00 0.00 37.30 3.85
59 60 4.575236 GCTTACTACAAGCCAATTAGTCCC 59.425 45.833 0.00 0.00 37.30 4.46
60 61 5.741011 CTTACTACAAGCCAATTAGTCCCA 58.259 41.667 0.00 0.00 0.00 4.37
61 62 4.222124 ACTACAAGCCAATTAGTCCCAG 57.778 45.455 0.00 0.00 0.00 4.45
62 63 3.587506 ACTACAAGCCAATTAGTCCCAGT 59.412 43.478 0.00 0.00 0.00 4.00
63 64 3.073274 ACAAGCCAATTAGTCCCAGTC 57.927 47.619 0.00 0.00 0.00 3.51
64 65 2.009774 CAAGCCAATTAGTCCCAGTCG 58.990 52.381 0.00 0.00 0.00 4.18
65 66 0.541863 AGCCAATTAGTCCCAGTCGG 59.458 55.000 0.00 0.00 0.00 4.79
66 67 1.095807 GCCAATTAGTCCCAGTCGGC 61.096 60.000 0.00 0.00 0.00 5.54
67 68 0.541863 CCAATTAGTCCCAGTCGGCT 59.458 55.000 0.00 0.00 0.00 5.52
68 69 1.065418 CCAATTAGTCCCAGTCGGCTT 60.065 52.381 0.00 0.00 0.00 4.35
69 70 2.009774 CAATTAGTCCCAGTCGGCTTG 58.990 52.381 0.00 0.00 0.00 4.01
70 71 0.107654 ATTAGTCCCAGTCGGCTTGC 60.108 55.000 0.00 0.00 0.00 4.01
71 72 1.192146 TTAGTCCCAGTCGGCTTGCT 61.192 55.000 0.00 0.00 0.00 3.91
72 73 1.888436 TAGTCCCAGTCGGCTTGCTG 61.888 60.000 0.00 0.00 0.00 4.41
73 74 4.704833 TCCCAGTCGGCTTGCTGC 62.705 66.667 0.00 0.00 41.94 5.25
74 75 4.711949 CCCAGTCGGCTTGCTGCT 62.712 66.667 0.00 0.00 42.39 4.24
122 123 0.687920 GGCACCTATAGGCTTCCTCC 59.312 60.000 19.25 7.17 39.32 4.30
123 124 1.723288 GCACCTATAGGCTTCCTCCT 58.277 55.000 19.25 0.00 39.32 3.69
124 125 1.346068 GCACCTATAGGCTTCCTCCTG 59.654 57.143 19.25 7.95 39.32 3.86
125 126 1.974236 CACCTATAGGCTTCCTCCTGG 59.026 57.143 19.25 0.00 39.32 4.45
126 127 0.980423 CCTATAGGCTTCCTCCTGGC 59.020 60.000 5.67 0.00 37.01 4.85
127 128 1.484065 CCTATAGGCTTCCTCCTGGCT 60.484 57.143 5.67 0.00 41.91 4.75
128 129 1.622811 CTATAGGCTTCCTCCTGGCTG 59.377 57.143 0.00 0.00 39.45 4.85
129 130 0.030705 ATAGGCTTCCTCCTGGCTGA 60.031 55.000 0.00 0.00 39.45 4.26
130 131 0.978146 TAGGCTTCCTCCTGGCTGAC 60.978 60.000 0.00 0.00 39.45 3.51
131 132 2.297129 GGCTTCCTCCTGGCTGACT 61.297 63.158 0.00 0.00 0.00 3.41
132 133 1.078567 GCTTCCTCCTGGCTGACTG 60.079 63.158 0.00 0.00 0.00 3.51
133 134 1.601171 CTTCCTCCTGGCTGACTGG 59.399 63.158 0.00 0.00 39.40 4.00
134 135 0.906756 CTTCCTCCTGGCTGACTGGA 60.907 60.000 8.97 8.97 44.02 3.86
135 136 1.194781 TTCCTCCTGGCTGACTGGAC 61.195 60.000 4.82 0.00 41.70 4.02
136 137 2.664081 CCTCCTGGCTGACTGGACC 61.664 68.421 4.82 0.00 41.70 4.46
137 138 2.607750 TCCTGGCTGACTGGACCC 60.608 66.667 4.82 0.00 41.70 4.46
138 139 2.930019 CCTGGCTGACTGGACCCA 60.930 66.667 0.00 0.00 40.42 4.51
139 140 2.528818 CCTGGCTGACTGGACCCAA 61.529 63.158 0.00 0.00 40.42 4.12
140 141 1.002868 CTGGCTGACTGGACCCAAG 60.003 63.158 0.00 0.00 0.00 3.61
141 142 2.360475 GGCTGACTGGACCCAAGC 60.360 66.667 3.27 3.27 0.00 4.01
142 143 2.743928 GCTGACTGGACCCAAGCG 60.744 66.667 0.00 0.00 0.00 4.68
143 144 2.046892 CTGACTGGACCCAAGCGG 60.047 66.667 0.00 0.00 37.81 5.52
144 145 4.329545 TGACTGGACCCAAGCGGC 62.330 66.667 0.00 0.00 33.26 6.53
145 146 4.021925 GACTGGACCCAAGCGGCT 62.022 66.667 0.00 0.00 33.26 5.52
146 147 2.606519 ACTGGACCCAAGCGGCTA 60.607 61.111 1.35 0.00 33.26 3.93
147 148 2.125106 CTGGACCCAAGCGGCTAC 60.125 66.667 1.35 0.00 33.26 3.58
148 149 3.682292 CTGGACCCAAGCGGCTACC 62.682 68.421 1.35 3.20 33.26 3.18
149 150 3.712907 GGACCCAAGCGGCTACCA 61.713 66.667 1.35 0.00 33.26 3.25
150 151 2.125106 GACCCAAGCGGCTACCAG 60.125 66.667 1.35 0.00 33.26 4.00
151 152 2.606519 ACCCAAGCGGCTACCAGA 60.607 61.111 1.35 0.00 33.26 3.86
152 153 1.972660 GACCCAAGCGGCTACCAGAT 61.973 60.000 1.35 0.00 33.26 2.90
153 154 1.524621 CCCAAGCGGCTACCAGATG 60.525 63.158 1.35 0.00 0.00 2.90
154 155 1.524621 CCAAGCGGCTACCAGATGG 60.525 63.158 1.35 1.76 42.17 3.51
155 156 2.182842 CAAGCGGCTACCAGATGGC 61.183 63.158 1.35 0.00 39.32 4.40
159 160 2.109181 GGCTACCAGATGGCCGTC 59.891 66.667 17.85 17.85 46.28 4.79
160 161 2.435693 GGCTACCAGATGGCCGTCT 61.436 63.158 22.42 22.42 46.28 4.18
161 162 1.113517 GGCTACCAGATGGCCGTCTA 61.114 60.000 27.12 11.37 46.28 2.59
162 163 0.969894 GCTACCAGATGGCCGTCTAT 59.030 55.000 27.12 19.65 39.32 1.98
163 164 1.337260 GCTACCAGATGGCCGTCTATG 60.337 57.143 27.12 21.79 39.32 2.23
164 165 1.964223 CTACCAGATGGCCGTCTATGT 59.036 52.381 27.12 25.72 39.32 2.29
165 166 2.082140 ACCAGATGGCCGTCTATGTA 57.918 50.000 27.12 0.00 39.32 2.29
166 167 2.609747 ACCAGATGGCCGTCTATGTAT 58.390 47.619 27.12 8.31 39.32 2.29
167 168 2.972713 ACCAGATGGCCGTCTATGTATT 59.027 45.455 27.12 0.42 39.32 1.89
168 169 4.157246 ACCAGATGGCCGTCTATGTATTA 58.843 43.478 27.12 0.00 39.32 0.98
169 170 4.777896 ACCAGATGGCCGTCTATGTATTAT 59.222 41.667 27.12 0.00 39.32 1.28
170 171 5.248477 ACCAGATGGCCGTCTATGTATTATT 59.752 40.000 27.12 0.00 39.32 1.40
171 172 6.173339 CCAGATGGCCGTCTATGTATTATTT 58.827 40.000 27.12 0.00 0.00 1.40
172 173 6.655003 CCAGATGGCCGTCTATGTATTATTTT 59.345 38.462 27.12 0.00 0.00 1.82
173 174 7.174946 CCAGATGGCCGTCTATGTATTATTTTT 59.825 37.037 27.12 0.00 0.00 1.94
174 175 8.017373 CAGATGGCCGTCTATGTATTATTTTTG 58.983 37.037 27.12 6.90 0.00 2.44
175 176 7.936847 AGATGGCCGTCTATGTATTATTTTTGA 59.063 33.333 26.51 0.00 0.00 2.69
176 177 7.867305 TGGCCGTCTATGTATTATTTTTGAA 57.133 32.000 0.00 0.00 0.00 2.69
177 178 8.282455 TGGCCGTCTATGTATTATTTTTGAAA 57.718 30.769 0.00 0.00 0.00 2.69
178 179 8.740906 TGGCCGTCTATGTATTATTTTTGAAAA 58.259 29.630 0.00 0.00 0.00 2.29
179 180 9.744468 GGCCGTCTATGTATTATTTTTGAAAAT 57.256 29.630 6.88 6.88 41.24 1.82
278 279 3.467803 GTTGTAGTTGTTCTCTGGCACT 58.532 45.455 0.00 0.00 0.00 4.40
299 747 0.179045 ATGTATCTTGCCTCGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
300 748 1.220749 GTATCTTGCCTCGGGTGCA 59.779 57.895 0.00 0.00 36.84 4.57
304 752 1.078497 CTTGCCTCGGGTGCATGTA 60.078 57.895 0.00 0.00 38.76 2.29
305 753 0.464373 CTTGCCTCGGGTGCATGTAT 60.464 55.000 0.00 0.00 38.76 2.29
308 756 1.526887 CCTCGGGTGCATGTATGGT 59.473 57.895 0.00 0.00 0.00 3.55
366 826 7.224753 TGCTTTATCTATAAAACGGAGCAGAAG 59.775 37.037 3.16 0.00 32.39 2.85
369 829 2.789409 ATAAAACGGAGCAGAAGCCT 57.211 45.000 0.00 0.00 43.56 4.58
409 869 1.605453 GTCCCTAAATCGGTGCCCA 59.395 57.895 0.00 0.00 0.00 5.36
417 877 0.322546 AATCGGTGCCCACTTCCTTC 60.323 55.000 0.00 0.00 0.00 3.46
420 880 0.955919 CGGTGCCCACTTCCTTCTTC 60.956 60.000 0.00 0.00 0.00 2.87
444 904 4.217118 GGAATGCTCATCTTCAAACACACT 59.783 41.667 0.00 0.00 0.00 3.55
445 905 5.278660 GGAATGCTCATCTTCAAACACACTT 60.279 40.000 0.00 0.00 0.00 3.16
446 906 5.779529 ATGCTCATCTTCAAACACACTTT 57.220 34.783 0.00 0.00 0.00 2.66
448 908 4.639755 TGCTCATCTTCAAACACACTTTCA 59.360 37.500 0.00 0.00 0.00 2.69
449 909 4.972440 GCTCATCTTCAAACACACTTTCAC 59.028 41.667 0.00 0.00 0.00 3.18
462 940 0.881118 CTTTCACCATCACCCAACCG 59.119 55.000 0.00 0.00 0.00 4.44
467 945 1.892474 CACCATCACCCAACCGAAATT 59.108 47.619 0.00 0.00 0.00 1.82
507 985 5.744666 ATTGCATTGCATATCTTTTTGGC 57.255 34.783 12.95 0.00 38.76 4.52
563 1042 0.806868 AAGACTGACATGGCATTGCG 59.193 50.000 0.00 0.00 0.00 4.85
648 1127 1.534175 GGGCATAGAGACGTGTCGAAG 60.534 57.143 7.10 0.08 34.09 3.79
951 1432 1.033574 GACGGAGGTGAGTGGGATAG 58.966 60.000 0.00 0.00 0.00 2.08
1294 1775 4.414956 TCCTCCTGGCCCATCCGT 62.415 66.667 0.00 0.00 37.80 4.69
1583 2067 3.567797 GCTTCACGGCGGAGATGC 61.568 66.667 20.24 20.24 0.00 3.91
1665 2149 5.319139 CGTGAGTTACTTGCATGAATTCTG 58.681 41.667 7.05 3.98 0.00 3.02
1805 2289 2.843401 ATGCCACAGTACGTAACCAA 57.157 45.000 0.00 0.00 0.00 3.67
1815 2309 3.760684 AGTACGTAACCAAAGATCGACCT 59.239 43.478 0.00 0.00 0.00 3.85
1856 2350 5.289595 TGCATGTCCATCTTATCGTACTTC 58.710 41.667 0.00 0.00 0.00 3.01
1861 2357 5.236695 TGTCCATCTTATCGTACTTCTCTCG 59.763 44.000 0.00 0.00 0.00 4.04
1866 2362 6.347270 TCTTATCGTACTTCTCTCGTCTTG 57.653 41.667 0.00 0.00 0.00 3.02
2011 2507 2.802792 CAGTTCATGGGCATGGCG 59.197 61.111 13.76 0.00 39.24 5.69
2134 2630 3.781307 CCACGGATCAAGGGGCGA 61.781 66.667 0.00 0.00 0.00 5.54
2271 2767 1.860641 TGAGCGTTCCTCCTTCCATA 58.139 50.000 0.00 0.00 39.98 2.74
2295 2791 0.810031 ATCGACGCCTACATGTTGGC 60.810 55.000 33.25 33.25 45.80 4.52
2297 2793 1.421410 CGACGCCTACATGTTGGCTC 61.421 60.000 36.84 30.64 46.80 4.70
2395 2892 5.833667 TGCCGGATAGATCTTTCTTCTTCTA 59.166 40.000 5.05 0.00 33.17 2.10
2397 2894 6.683715 CCGGATAGATCTTTCTTCTTCTACC 58.316 44.000 12.20 0.00 33.17 3.18
2422 2926 6.560253 AAAAAGCTAATGAACTGACGTCAT 57.440 33.333 20.40 4.74 0.00 3.06
2440 2944 5.163804 ACGTCATATAACAAGCAAATTCGCA 60.164 36.000 0.00 0.00 0.00 5.10
2487 2991 1.911293 GCGCACGGATCTTGAAGCAA 61.911 55.000 0.30 0.00 0.00 3.91
2509 3013 2.662596 GTCGCCACATCAGGTCCA 59.337 61.111 0.00 0.00 0.00 4.02
2514 3018 1.679944 CGCCACATCAGGTCCAAAGAT 60.680 52.381 0.00 0.00 0.00 2.40
2529 3033 3.678072 CCAAAGATCGTTCGCTGAAACTA 59.322 43.478 0.00 0.00 0.00 2.24
2564 3072 1.887707 CCCAATTACTCCTCGCCGC 60.888 63.158 0.00 0.00 0.00 6.53
2922 3430 3.063084 GACCGAGCTCACCGAGGT 61.063 66.667 15.40 12.29 43.43 3.85
2929 3437 1.068250 GCTCACCGAGGTAGGATGC 59.932 63.158 0.00 0.00 34.73 3.91
3008 3995 3.323979 TCCTGGAGGAGACACTACAAAAC 59.676 47.826 0.00 0.00 39.78 2.43
3026 4013 1.079405 CGGAGGACTTTTAGCGGCA 60.079 57.895 1.45 0.00 0.00 5.69
3032 4019 2.084546 GGACTTTTAGCGGCAGTTCAT 58.915 47.619 1.45 0.00 0.00 2.57
3043 4030 1.956477 GGCAGTTCATTTGTGTCAGGT 59.044 47.619 0.00 0.00 0.00 4.00
3048 4035 6.215845 GCAGTTCATTTGTGTCAGGTAAAAT 58.784 36.000 0.00 0.00 0.00 1.82
3050 4037 7.224557 GCAGTTCATTTGTGTCAGGTAAAATTT 59.775 33.333 0.00 0.00 0.00 1.82
3051 4038 9.097257 CAGTTCATTTGTGTCAGGTAAAATTTT 57.903 29.630 8.75 8.75 0.00 1.82
3052 4039 9.665719 AGTTCATTTGTGTCAGGTAAAATTTTT 57.334 25.926 9.06 0.00 0.00 1.94
3075 4062 4.849111 TTTGTCACCGAAAATGTTTTGC 57.151 36.364 0.00 0.00 0.00 3.68
3077 4064 4.902443 TGTCACCGAAAATGTTTTGCTA 57.098 36.364 0.00 0.00 0.00 3.49
3078 4065 5.250235 TGTCACCGAAAATGTTTTGCTAA 57.750 34.783 0.00 0.00 0.00 3.09
3079 4066 5.038033 TGTCACCGAAAATGTTTTGCTAAC 58.962 37.500 0.00 0.00 0.00 2.34
3087 4074 6.237595 CGAAAATGTTTTGCTAACGGTTTTCA 60.238 34.615 24.22 0.00 37.29 2.69
3090 4077 4.915704 TGTTTTGCTAACGGTTTTCAGAG 58.084 39.130 0.00 0.00 0.00 3.35
3091 4078 3.619233 TTTGCTAACGGTTTTCAGAGC 57.381 42.857 0.00 1.96 0.00 4.09
3092 4079 1.519408 TGCTAACGGTTTTCAGAGCC 58.481 50.000 9.41 0.00 0.00 4.70
3093 4080 1.202710 TGCTAACGGTTTTCAGAGCCA 60.203 47.619 9.41 0.00 0.00 4.75
3094 4081 1.197036 GCTAACGGTTTTCAGAGCCAC 59.803 52.381 0.00 0.00 0.00 5.01
3097 4084 1.073199 CGGTTTTCAGAGCCACCCT 59.927 57.895 0.00 0.00 0.00 4.34
3098 4085 0.323629 CGGTTTTCAGAGCCACCCTA 59.676 55.000 0.00 0.00 0.00 3.53
3099 4086 1.822506 GGTTTTCAGAGCCACCCTAC 58.177 55.000 0.00 0.00 0.00 3.18
3100 4087 1.351350 GGTTTTCAGAGCCACCCTACT 59.649 52.381 0.00 0.00 0.00 2.57
3101 4088 2.427506 GTTTTCAGAGCCACCCTACTG 58.572 52.381 0.00 0.00 0.00 2.74
3102 4089 1.729586 TTTCAGAGCCACCCTACTGT 58.270 50.000 0.00 0.00 0.00 3.55
3118 4106 4.450419 CCTACTGTCACTGAAGAGCAAAAG 59.550 45.833 0.00 0.00 0.00 2.27
3144 4132 5.435820 AATTTTGACGGTACCGCTTTTTA 57.564 34.783 33.62 15.31 44.19 1.52
3183 4172 2.542595 GTGACGGTTCGAGTTTTGTCAT 59.457 45.455 9.98 0.00 38.46 3.06
3190 4179 4.319549 GGTTCGAGTTTTGTCATGGAAGTC 60.320 45.833 0.00 0.00 0.00 3.01
3206 4196 1.508632 AGTCCATTTCGGTGACAACG 58.491 50.000 6.54 6.54 35.57 4.10
3217 4207 2.915463 CGGTGACAACGAAGACTATCAC 59.085 50.000 7.21 0.00 36.55 3.06
3224 4214 4.989168 ACAACGAAGACTATCACCTTTGAC 59.011 41.667 0.00 0.00 33.38 3.18
3227 4217 3.522553 GAAGACTATCACCTTTGACCGG 58.477 50.000 0.00 0.00 33.38 5.28
3228 4218 2.537143 AGACTATCACCTTTGACCGGT 58.463 47.619 6.92 6.92 33.38 5.28
3229 4219 2.496470 AGACTATCACCTTTGACCGGTC 59.504 50.000 28.17 28.17 33.38 4.79
3230 4220 1.203994 ACTATCACCTTTGACCGGTCG 59.796 52.381 28.70 17.05 33.38 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.160137 GGCTTATTGCTGGCCGATAG 58.840 55.000 0.00 0.00 42.39 2.08
3 4 4.164258 GGCTTATTGCTGGCCGAT 57.836 55.556 0.00 0.00 42.39 4.18
6 7 3.111038 GTCGGCTTATTGCTGGCC 58.889 61.111 0.00 0.00 46.37 5.36
10 11 5.593679 TTAGTCTTAGTCGGCTTATTGCT 57.406 39.130 0.00 0.00 42.39 3.91
11 12 6.292919 CCAATTAGTCTTAGTCGGCTTATTGC 60.293 42.308 0.00 0.00 41.94 3.56
12 13 6.292919 GCCAATTAGTCTTAGTCGGCTTATTG 60.293 42.308 0.00 0.00 35.39 1.90
13 14 5.758784 GCCAATTAGTCTTAGTCGGCTTATT 59.241 40.000 0.00 0.00 35.39 1.40
14 15 5.070580 AGCCAATTAGTCTTAGTCGGCTTAT 59.929 40.000 0.00 0.00 46.19 1.73
15 16 4.404715 AGCCAATTAGTCTTAGTCGGCTTA 59.595 41.667 0.00 0.00 46.19 3.09
16 17 3.197983 AGCCAATTAGTCTTAGTCGGCTT 59.802 43.478 0.00 0.00 46.19 4.35
17 18 2.766828 AGCCAATTAGTCTTAGTCGGCT 59.233 45.455 0.00 0.00 43.65 5.52
18 19 3.180891 AGCCAATTAGTCTTAGTCGGC 57.819 47.619 0.00 0.00 38.60 5.54
19 20 5.903810 AGTAAGCCAATTAGTCTTAGTCGG 58.096 41.667 0.00 0.00 0.00 4.79
20 21 7.478322 TGTAGTAAGCCAATTAGTCTTAGTCG 58.522 38.462 4.93 0.00 30.95 4.18
21 22 9.303537 CTTGTAGTAAGCCAATTAGTCTTAGTC 57.696 37.037 4.93 0.00 30.95 2.59
22 23 7.764901 GCTTGTAGTAAGCCAATTAGTCTTAGT 59.235 37.037 0.30 0.00 37.30 2.24
23 24 8.132604 GCTTGTAGTAAGCCAATTAGTCTTAG 57.867 38.462 0.30 0.00 37.30 2.18
25 26 6.986904 GCTTGTAGTAAGCCAATTAGTCTT 57.013 37.500 0.30 0.00 37.30 3.01
36 37 4.575236 GGGACTAATTGGCTTGTAGTAAGC 59.425 45.833 3.16 3.16 42.30 3.09
37 38 5.741011 TGGGACTAATTGGCTTGTAGTAAG 58.259 41.667 0.00 0.00 0.00 2.34
38 39 5.249852 ACTGGGACTAATTGGCTTGTAGTAA 59.750 40.000 0.00 0.00 0.00 2.24
39 40 4.781087 ACTGGGACTAATTGGCTTGTAGTA 59.219 41.667 0.00 0.00 0.00 1.82
40 41 3.587506 ACTGGGACTAATTGGCTTGTAGT 59.412 43.478 0.00 0.00 0.00 2.73
41 42 4.192317 GACTGGGACTAATTGGCTTGTAG 58.808 47.826 0.00 0.00 0.00 2.74
42 43 3.369052 CGACTGGGACTAATTGGCTTGTA 60.369 47.826 0.00 0.00 0.00 2.41
43 44 2.615493 CGACTGGGACTAATTGGCTTGT 60.615 50.000 0.00 0.00 0.00 3.16
44 45 2.009774 CGACTGGGACTAATTGGCTTG 58.990 52.381 0.00 0.00 0.00 4.01
45 46 1.065418 CCGACTGGGACTAATTGGCTT 60.065 52.381 0.00 0.00 38.47 4.35
46 47 0.541863 CCGACTGGGACTAATTGGCT 59.458 55.000 0.00 0.00 38.47 4.75
47 48 1.095807 GCCGACTGGGACTAATTGGC 61.096 60.000 0.00 0.00 38.47 4.52
48 49 0.541863 AGCCGACTGGGACTAATTGG 59.458 55.000 0.00 0.00 38.47 3.16
49 50 2.009774 CAAGCCGACTGGGACTAATTG 58.990 52.381 0.00 0.00 38.47 2.32
50 51 1.679032 GCAAGCCGACTGGGACTAATT 60.679 52.381 0.00 0.00 38.47 1.40
51 52 0.107654 GCAAGCCGACTGGGACTAAT 60.108 55.000 0.00 0.00 38.47 1.73
52 53 1.192146 AGCAAGCCGACTGGGACTAA 61.192 55.000 0.00 0.00 38.47 2.24
53 54 1.609501 AGCAAGCCGACTGGGACTA 60.610 57.895 0.00 0.00 38.47 2.59
54 55 2.925170 AGCAAGCCGACTGGGACT 60.925 61.111 0.00 0.00 38.47 3.85
55 56 2.743928 CAGCAAGCCGACTGGGAC 60.744 66.667 0.00 0.00 38.47 4.46
56 57 4.704833 GCAGCAAGCCGACTGGGA 62.705 66.667 0.00 0.00 38.47 4.37
96 97 2.743718 CTATAGGTGCCCTGCCGG 59.256 66.667 0.00 0.00 34.61 6.13
97 98 2.743718 CCTATAGGTGCCCTGCCG 59.256 66.667 10.96 0.00 34.61 5.69
98 99 1.709994 AAGCCTATAGGTGCCCTGCC 61.710 60.000 20.10 0.79 34.61 4.85
99 100 0.250510 GAAGCCTATAGGTGCCCTGC 60.251 60.000 20.10 3.62 34.61 4.85
100 101 0.398318 GGAAGCCTATAGGTGCCCTG 59.602 60.000 20.10 0.00 34.61 4.45
101 102 0.269173 AGGAAGCCTATAGGTGCCCT 59.731 55.000 20.10 18.31 37.57 5.19
102 103 0.687920 GAGGAAGCCTATAGGTGCCC 59.312 60.000 20.10 16.57 37.57 5.36
103 104 0.687920 GGAGGAAGCCTATAGGTGCC 59.312 60.000 20.10 17.17 37.57 5.01
104 105 1.346068 CAGGAGGAAGCCTATAGGTGC 59.654 57.143 20.10 6.72 36.22 5.01
105 106 1.974236 CCAGGAGGAAGCCTATAGGTG 59.026 57.143 20.10 7.61 36.22 4.00
106 107 1.763192 GCCAGGAGGAAGCCTATAGGT 60.763 57.143 20.10 0.62 36.22 3.08
107 108 0.980423 GCCAGGAGGAAGCCTATAGG 59.020 60.000 15.01 15.01 36.22 2.57
108 109 1.622811 CAGCCAGGAGGAAGCCTATAG 59.377 57.143 0.00 0.00 36.22 1.31
109 110 1.220493 TCAGCCAGGAGGAAGCCTATA 59.780 52.381 0.00 0.00 36.22 1.31
110 111 0.030705 TCAGCCAGGAGGAAGCCTAT 60.031 55.000 0.00 0.00 36.22 2.57
111 112 0.978146 GTCAGCCAGGAGGAAGCCTA 60.978 60.000 0.00 0.00 36.22 3.93
112 113 2.123632 TCAGCCAGGAGGAAGCCT 59.876 61.111 0.00 0.00 39.37 4.58
113 114 2.270527 GTCAGCCAGGAGGAAGCC 59.729 66.667 0.00 0.00 36.89 4.35
114 115 1.078567 CAGTCAGCCAGGAGGAAGC 60.079 63.158 0.00 0.00 36.89 3.86
115 116 0.906756 TCCAGTCAGCCAGGAGGAAG 60.907 60.000 0.00 0.00 36.89 3.46
116 117 1.158466 TCCAGTCAGCCAGGAGGAA 59.842 57.895 0.00 0.00 36.89 3.36
117 118 1.610673 GTCCAGTCAGCCAGGAGGA 60.611 63.158 0.00 0.00 36.89 3.71
118 119 2.664081 GGTCCAGTCAGCCAGGAGG 61.664 68.421 0.00 0.00 38.23 4.30
119 120 2.664081 GGGTCCAGTCAGCCAGGAG 61.664 68.421 0.00 0.00 33.76 3.69
120 121 2.607750 GGGTCCAGTCAGCCAGGA 60.608 66.667 0.00 0.00 33.76 3.86
121 122 2.475371 CTTGGGTCCAGTCAGCCAGG 62.475 65.000 0.00 0.00 44.71 4.45
122 123 1.002868 CTTGGGTCCAGTCAGCCAG 60.003 63.158 0.00 0.00 44.71 4.85
123 124 3.160585 CTTGGGTCCAGTCAGCCA 58.839 61.111 0.00 0.00 42.35 4.75
124 125 2.360475 GCTTGGGTCCAGTCAGCC 60.360 66.667 1.72 0.00 34.21 4.85
125 126 2.743928 CGCTTGGGTCCAGTCAGC 60.744 66.667 2.87 2.87 0.00 4.26
126 127 2.046892 CCGCTTGGGTCCAGTCAG 60.047 66.667 0.00 0.00 0.00 3.51
127 128 4.329545 GCCGCTTGGGTCCAGTCA 62.330 66.667 0.00 0.00 38.44 3.41
128 129 2.656069 TAGCCGCTTGGGTCCAGTC 61.656 63.158 0.00 0.00 44.02 3.51
129 130 2.606519 TAGCCGCTTGGGTCCAGT 60.607 61.111 0.00 0.00 44.02 4.00
130 131 2.125106 GTAGCCGCTTGGGTCCAG 60.125 66.667 0.00 0.00 44.02 3.86
131 132 3.712907 GGTAGCCGCTTGGGTCCA 61.713 66.667 0.00 0.00 44.02 4.02
132 133 3.682292 CTGGTAGCCGCTTGGGTCC 62.682 68.421 0.00 0.00 44.02 4.46
133 134 1.972660 ATCTGGTAGCCGCTTGGGTC 61.973 60.000 0.00 0.00 44.02 4.46
135 136 1.524621 CATCTGGTAGCCGCTTGGG 60.525 63.158 0.00 0.00 39.58 4.12
136 137 1.524621 CCATCTGGTAGCCGCTTGG 60.525 63.158 0.00 0.00 0.00 3.61
137 138 2.182842 GCCATCTGGTAGCCGCTTG 61.183 63.158 0.00 0.00 37.57 4.01
138 139 2.190578 GCCATCTGGTAGCCGCTT 59.809 61.111 0.00 0.00 37.57 4.68
139 140 3.866582 GGCCATCTGGTAGCCGCT 61.867 66.667 0.00 0.00 36.84 5.52
142 143 1.113517 TAGACGGCCATCTGGTAGCC 61.114 60.000 12.63 0.00 43.53 3.93
143 144 0.969894 ATAGACGGCCATCTGGTAGC 59.030 55.000 12.63 0.00 37.57 3.58
144 145 1.964223 ACATAGACGGCCATCTGGTAG 59.036 52.381 12.63 0.78 37.57 3.18
145 146 2.082140 ACATAGACGGCCATCTGGTA 57.918 50.000 12.63 0.00 37.57 3.25
146 147 2.082140 TACATAGACGGCCATCTGGT 57.918 50.000 12.63 12.15 37.57 4.00
147 148 3.685139 AATACATAGACGGCCATCTGG 57.315 47.619 12.63 6.17 38.53 3.86
148 149 7.672983 AAAATAATACATAGACGGCCATCTG 57.327 36.000 12.63 0.00 0.00 2.90
149 150 7.936847 TCAAAAATAATACATAGACGGCCATCT 59.063 33.333 6.56 6.56 0.00 2.90
150 151 8.094798 TCAAAAATAATACATAGACGGCCATC 57.905 34.615 2.24 0.00 0.00 3.51
151 152 8.458573 TTCAAAAATAATACATAGACGGCCAT 57.541 30.769 2.24 0.00 0.00 4.40
152 153 7.867305 TTCAAAAATAATACATAGACGGCCA 57.133 32.000 2.24 0.00 0.00 5.36
153 154 9.744468 ATTTTCAAAAATAATACATAGACGGCC 57.256 29.630 0.00 0.00 36.88 6.13
234 235 3.165071 CCCACCAACTCCAGCTATTTTT 58.835 45.455 0.00 0.00 0.00 1.94
235 236 2.557452 CCCCACCAACTCCAGCTATTTT 60.557 50.000 0.00 0.00 0.00 1.82
236 237 1.005924 CCCCACCAACTCCAGCTATTT 59.994 52.381 0.00 0.00 0.00 1.40
237 238 0.625849 CCCCACCAACTCCAGCTATT 59.374 55.000 0.00 0.00 0.00 1.73
238 239 1.281925 CCCCCACCAACTCCAGCTAT 61.282 60.000 0.00 0.00 0.00 2.97
239 240 1.923395 CCCCCACCAACTCCAGCTA 60.923 63.158 0.00 0.00 0.00 3.32
240 241 3.260100 CCCCCACCAACTCCAGCT 61.260 66.667 0.00 0.00 0.00 4.24
241 242 3.146828 AACCCCCACCAACTCCAGC 62.147 63.158 0.00 0.00 0.00 4.85
242 243 1.228552 CAACCCCCACCAACTCCAG 60.229 63.158 0.00 0.00 0.00 3.86
243 244 0.698198 TACAACCCCCACCAACTCCA 60.698 55.000 0.00 0.00 0.00 3.86
278 279 2.484770 GCACCCGAGGCAAGATACATAA 60.485 50.000 0.00 0.00 0.00 1.90
291 739 0.107703 ACACCATACATGCACCCGAG 60.108 55.000 0.00 0.00 0.00 4.63
299 747 4.536065 GACACAACACAACACCATACATG 58.464 43.478 0.00 0.00 0.00 3.21
300 748 3.249799 CGACACAACACAACACCATACAT 59.750 43.478 0.00 0.00 0.00 2.29
304 752 1.939934 CTCGACACAACACAACACCAT 59.060 47.619 0.00 0.00 0.00 3.55
305 753 1.338294 ACTCGACACAACACAACACCA 60.338 47.619 0.00 0.00 0.00 4.17
308 756 2.418692 ACAACTCGACACAACACAACA 58.581 42.857 0.00 0.00 0.00 3.33
385 845 3.357504 CCGATTTAGGGACGGTCAC 57.642 57.895 10.76 6.34 41.47 3.67
391 851 4.553668 GGGCACCGATTTAGGGAC 57.446 61.111 0.00 0.00 40.86 4.46
409 869 2.303022 TGAGCATTCCGAAGAAGGAAGT 59.697 45.455 4.71 0.00 45.64 3.01
417 877 4.154737 TGTTTGAAGATGAGCATTCCGAAG 59.845 41.667 0.00 0.00 0.00 3.79
420 880 3.189080 TGTGTTTGAAGATGAGCATTCCG 59.811 43.478 0.00 0.00 0.00 4.30
444 904 0.474614 TCGGTTGGGTGATGGTGAAA 59.525 50.000 0.00 0.00 0.00 2.69
445 905 0.474614 TTCGGTTGGGTGATGGTGAA 59.525 50.000 0.00 0.00 0.00 3.18
446 906 0.474614 TTTCGGTTGGGTGATGGTGA 59.525 50.000 0.00 0.00 0.00 4.02
448 908 2.167662 GAATTTCGGTTGGGTGATGGT 58.832 47.619 0.00 0.00 0.00 3.55
449 909 2.164219 CAGAATTTCGGTTGGGTGATGG 59.836 50.000 0.00 0.00 0.00 3.51
533 1012 6.152492 TGCCATGTCAGTCTTTATAAATTGCA 59.848 34.615 0.00 0.00 0.00 4.08
538 1017 6.563422 GCAATGCCATGTCAGTCTTTATAAA 58.437 36.000 0.00 0.00 0.00 1.40
542 1021 2.419673 CGCAATGCCATGTCAGTCTTTA 59.580 45.455 0.00 0.00 0.00 1.85
563 1042 1.360192 GTCAAGGCTGGTTGTGCAC 59.640 57.895 10.75 10.75 0.00 4.57
571 1050 0.804989 GTTCCGATTGTCAAGGCTGG 59.195 55.000 0.00 0.00 0.00 4.85
648 1127 2.263540 CCAATGCTGCCTTGCACC 59.736 61.111 11.54 0.00 46.33 5.01
730 1210 0.392998 CTTATCTTGTGGCCTGGCGT 60.393 55.000 13.40 0.00 0.00 5.68
951 1432 5.619533 GCGGGCTATATATACGCTTATCCTC 60.620 48.000 15.29 2.37 46.02 3.71
1294 1775 3.352748 TAGGACCTCCGGCCCTCA 61.353 66.667 0.00 0.00 42.08 3.86
1492 1976 1.522580 GCCCTCGTTGCTCTCCATC 60.523 63.158 0.00 0.00 0.00 3.51
1493 1977 2.249413 CTGCCCTCGTTGCTCTCCAT 62.249 60.000 0.00 0.00 0.00 3.41
1583 2067 3.740044 AGAATTTTGTGCATCGTACGG 57.260 42.857 16.52 0.69 0.00 4.02
1665 2149 6.040391 AGTTGCTAGATAGAGATCAAGTCCAC 59.960 42.308 0.00 0.00 34.17 4.02
1805 2289 3.357203 TCAAGCACTCTAGGTCGATCTT 58.643 45.455 2.08 0.00 0.00 2.40
1815 2309 2.767960 TGCATGGAGATCAAGCACTCTA 59.232 45.455 0.00 0.00 43.97 2.43
1856 2350 4.499183 AGCTGGAAATAACAAGACGAGAG 58.501 43.478 0.00 0.00 0.00 3.20
1861 2357 7.147976 ACATTGAAAGCTGGAAATAACAAGAC 58.852 34.615 0.00 0.00 0.00 3.01
1866 2362 7.315142 TGATGACATTGAAAGCTGGAAATAAC 58.685 34.615 0.00 0.00 0.00 1.89
2011 2507 2.750657 CCTGGCCTCCCTGTCCATC 61.751 68.421 3.32 0.00 0.00 3.51
2295 2791 1.594862 CGGCAAATTAAGGAGAGCGAG 59.405 52.381 0.00 0.00 0.00 5.03
2297 2793 1.651987 TCGGCAAATTAAGGAGAGCG 58.348 50.000 0.00 0.00 0.00 5.03
2395 2892 5.995897 ACGTCAGTTCATTAGCTTTTTAGGT 59.004 36.000 0.00 0.00 0.00 3.08
2397 2894 7.117241 TGACGTCAGTTCATTAGCTTTTTAG 57.883 36.000 15.76 0.00 0.00 1.85
2422 2926 4.930463 TCGTGCGAATTTGCTTGTTATA 57.070 36.364 18.44 0.00 35.36 0.98
2440 2944 1.085501 ACGACAACCAAAGCGTTCGT 61.086 50.000 0.00 0.00 32.42 3.85
2487 2991 4.457496 CTGATGTGGCGACGGGCT 62.457 66.667 0.00 0.00 42.94 5.19
2505 3009 1.710013 TCAGCGAACGATCTTTGGAC 58.290 50.000 0.00 0.00 0.00 4.02
2509 3013 3.927142 CCTAGTTTCAGCGAACGATCTTT 59.073 43.478 0.00 0.00 34.74 2.52
2514 3018 0.601558 AGCCTAGTTTCAGCGAACGA 59.398 50.000 0.00 0.00 34.74 3.85
2529 3033 0.678048 GGGATTGCGTTCTGAAGCCT 60.678 55.000 8.61 0.00 0.00 4.58
2541 3049 1.604278 GCGAGGAGTAATTGGGATTGC 59.396 52.381 0.00 0.00 0.00 3.56
2945 3932 2.859273 AATCCCTTGAGGCGCTCGTG 62.859 60.000 7.64 0.14 32.35 4.35
3008 3995 1.079405 TGCCGCTAAAAGTCCTCCG 60.079 57.895 0.00 0.00 0.00 4.63
3026 4013 9.665719 AAAAATTTTACCTGACACAAATGAACT 57.334 25.926 3.34 0.00 0.00 3.01
3052 4039 5.409826 AGCAAAACATTTTCGGTGACAAAAA 59.590 32.000 0.00 0.00 0.00 1.94
3062 4049 5.629348 AAACCGTTAGCAAAACATTTTCG 57.371 34.783 3.29 0.00 0.00 3.46
3071 4058 2.292292 GGCTCTGAAAACCGTTAGCAAA 59.708 45.455 5.56 0.00 0.00 3.68
3075 4062 1.804748 GGTGGCTCTGAAAACCGTTAG 59.195 52.381 0.00 0.00 0.00 2.34
3077 4064 0.822121 GGGTGGCTCTGAAAACCGTT 60.822 55.000 0.00 0.00 33.24 4.44
3078 4065 1.228154 GGGTGGCTCTGAAAACCGT 60.228 57.895 0.00 0.00 33.24 4.83
3079 4066 0.323629 TAGGGTGGCTCTGAAAACCG 59.676 55.000 0.00 0.00 33.24 4.44
3087 4074 0.115349 AGTGACAGTAGGGTGGCTCT 59.885 55.000 0.00 0.00 0.00 4.09
3090 4077 0.685097 TTCAGTGACAGTAGGGTGGC 59.315 55.000 0.00 0.00 0.00 5.01
3091 4078 2.232452 CTCTTCAGTGACAGTAGGGTGG 59.768 54.545 0.00 0.00 0.00 4.61
3092 4079 2.353208 GCTCTTCAGTGACAGTAGGGTG 60.353 54.545 0.00 0.00 0.00 4.61
3093 4080 1.896465 GCTCTTCAGTGACAGTAGGGT 59.104 52.381 0.00 0.00 0.00 4.34
3094 4081 1.895798 TGCTCTTCAGTGACAGTAGGG 59.104 52.381 0.00 0.00 0.00 3.53
3097 4084 5.023533 ACTTTTGCTCTTCAGTGACAGTA 57.976 39.130 0.00 0.00 0.00 2.74
3098 4085 3.878778 ACTTTTGCTCTTCAGTGACAGT 58.121 40.909 0.00 0.00 0.00 3.55
3099 4086 5.991328 TTACTTTTGCTCTTCAGTGACAG 57.009 39.130 0.00 0.00 0.00 3.51
3100 4087 6.751514 TTTTACTTTTGCTCTTCAGTGACA 57.248 33.333 0.00 0.00 0.00 3.58
3101 4088 8.634475 AAATTTTACTTTTGCTCTTCAGTGAC 57.366 30.769 0.00 0.00 0.00 3.67
3102 4089 9.086336 CAAAATTTTACTTTTGCTCTTCAGTGA 57.914 29.630 2.44 0.00 38.75 3.41
3118 4106 4.408993 AGCGGTACCGTCAAAATTTTAC 57.591 40.909 33.34 13.44 42.09 2.01
3130 4118 1.728425 GGTGACTAAAAAGCGGTACCG 59.272 52.381 30.06 30.06 43.09 4.02
3190 4179 2.096417 GTCTTCGTTGTCACCGAAATGG 60.096 50.000 6.67 0.00 43.03 3.16
3206 4196 3.056035 ACCGGTCAAAGGTGATAGTCTTC 60.056 47.826 0.00 0.00 41.10 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.