Multiple sequence alignment - TraesCS5D01G170500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G170500 chr5D 100.000 4343 0 0 1 4343 267239433 267235091 0.000000e+00 8021
1 TraesCS5D01G170500 chr5D 98.011 352 5 2 3993 4343 267214384 267214034 1.030000e-170 610
2 TraesCS5D01G170500 chr5D 97.450 353 7 2 3993 4343 205467527 205467879 6.210000e-168 601
3 TraesCS5D01G170500 chr5D 89.262 149 14 1 3758 3904 506079924 506080072 7.420000e-43 185
4 TraesCS5D01G170500 chr5A 95.388 3751 124 17 2 3707 353569122 353572868 0.000000e+00 5923
5 TraesCS5D01G170500 chr5A 87.546 273 12 5 3726 3993 353573119 353573374 3.280000e-76 296
6 TraesCS5D01G170500 chr5A 87.919 149 15 2 3758 3904 633847299 633847446 5.770000e-39 172
7 TraesCS5D01G170500 chr5B 94.285 3342 127 19 686 3991 301304206 301300893 0.000000e+00 5055
8 TraesCS5D01G170500 chr5B 87.248 149 17 1 3758 3904 636601359 636601507 7.470000e-38 169
9 TraesCS5D01G170500 chr3D 97.450 353 7 2 3993 4343 365607545 365607897 6.210000e-168 601
10 TraesCS5D01G170500 chr3D 97.167 353 8 2 3993 4343 412858516 412858868 2.890000e-166 595
11 TraesCS5D01G170500 chr1D 97.450 353 7 2 3993 4343 274753969 274754321 6.210000e-168 601
12 TraesCS5D01G170500 chr7D 97.167 353 8 2 3993 4343 52311471 52311823 2.890000e-166 595
13 TraesCS5D01G170500 chr7D 97.167 353 8 2 3993 4343 149162089 149161737 2.890000e-166 595
14 TraesCS5D01G170500 chr7D 95.135 370 14 4 3978 4343 566867399 566867030 8.100000e-162 580
15 TraesCS5D01G170500 chr4D 97.167 353 8 2 3993 4343 336212342 336211990 2.890000e-166 595
16 TraesCS5D01G170500 chr1B 76.882 558 112 11 1 553 510233551 510233006 2.540000e-77 300
17 TraesCS5D01G170500 chr4B 76.637 565 108 18 1 555 451279523 451280073 1.530000e-74 291
18 TraesCS5D01G170500 chr4B 76.460 565 109 18 1 555 451213497 451214047 7.110000e-73 285
19 TraesCS5D01G170500 chr3A 80.753 239 38 6 74 310 290308548 290308316 3.450000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G170500 chr5D 267235091 267239433 4342 True 8021.0 8021 100.000 1 4343 1 chr5D.!!$R2 4342
1 TraesCS5D01G170500 chr5A 353569122 353573374 4252 False 3109.5 5923 91.467 2 3993 2 chr5A.!!$F2 3991
2 TraesCS5D01G170500 chr5B 301300893 301304206 3313 True 5055.0 5055 94.285 686 3991 1 chr5B.!!$R1 3305
3 TraesCS5D01G170500 chr1B 510233006 510233551 545 True 300.0 300 76.882 1 553 1 chr1B.!!$R1 552
4 TraesCS5D01G170500 chr4B 451279523 451280073 550 False 291.0 291 76.637 1 555 1 chr4B.!!$F2 554
5 TraesCS5D01G170500 chr4B 451213497 451214047 550 False 285.0 285 76.460 1 555 1 chr4B.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 288 0.035739 GCCGGTCACAAGTTCCCTTA 59.964 55.0 1.90 0.0 0.00 2.69 F
732 781 0.038021 TGGCTTGCCTCTAATGCACA 59.962 50.0 13.18 0.0 38.72 4.57 F
2019 2101 0.034186 AGCGCTTCCCATCATCCAAA 60.034 50.0 2.64 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1756 1.128692 GACGGAGGCGATTGTTTCTTG 59.871 52.381 0.0 0.0 0.00 3.02 R
2544 2626 0.171903 CCTCCTGGAATTTTGCTGCG 59.828 55.000 0.0 0.0 34.57 5.18 R
3558 3645 0.033366 CCTTGAAACCGGCCCAAAAG 59.967 55.000 0.0 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 162 2.444624 CGACAACCTCCGCATCGTG 61.445 63.158 0.00 0.00 0.00 4.35
189 193 3.305064 GGATTTTGTTGCGAACTTGGCTA 60.305 43.478 0.00 0.00 0.00 3.93
228 232 0.896226 GTAGCGTCTCACCCTCCTTT 59.104 55.000 0.00 0.00 0.00 3.11
231 235 0.250338 GCGTCTCACCCTCCTTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
232 236 1.001633 GCGTCTCACCCTCCTTTTGTA 59.998 52.381 0.00 0.00 0.00 2.41
284 288 0.035739 GCCGGTCACAAGTTCCCTTA 59.964 55.000 1.90 0.00 0.00 2.69
335 339 3.426159 CGTCCCAAGTTTCGATGGAATTG 60.426 47.826 4.30 1.45 39.12 2.32
338 362 3.367292 CCCAAGTTTCGATGGAATTGTGG 60.367 47.826 4.30 0.00 39.12 4.17
373 397 2.019807 AAGGGTCGTAGGAAACCAGA 57.980 50.000 9.33 0.00 37.28 3.86
387 436 0.908910 ACCAGATAACCATGGCGTCA 59.091 50.000 13.04 0.00 40.45 4.35
388 437 1.134401 ACCAGATAACCATGGCGTCAG 60.134 52.381 13.04 4.42 40.45 3.51
389 438 1.138859 CCAGATAACCATGGCGTCAGA 59.861 52.381 13.04 0.00 0.00 3.27
390 439 2.477825 CAGATAACCATGGCGTCAGAG 58.522 52.381 13.04 0.00 0.00 3.35
391 440 2.111384 AGATAACCATGGCGTCAGAGT 58.889 47.619 13.04 0.00 0.00 3.24
392 441 2.159043 AGATAACCATGGCGTCAGAGTG 60.159 50.000 13.04 0.00 0.00 3.51
393 442 0.249120 TAACCATGGCGTCAGAGTGG 59.751 55.000 13.04 6.59 36.06 4.00
394 443 2.821366 CCATGGCGTCAGAGTGGC 60.821 66.667 0.00 0.00 0.00 5.01
398 447 2.821366 GGCGTCAGAGTGGCCATG 60.821 66.667 9.72 2.84 46.13 3.66
399 448 2.265739 GCGTCAGAGTGGCCATGA 59.734 61.111 9.72 5.95 0.00 3.07
400 449 1.812922 GCGTCAGAGTGGCCATGAG 60.813 63.158 9.72 4.43 0.00 2.90
401 450 1.812922 CGTCAGAGTGGCCATGAGC 60.813 63.158 9.72 0.00 42.60 4.26
410 459 4.575973 GCCATGAGCCGCCTGGAT 62.576 66.667 0.00 0.00 37.49 3.41
411 460 2.194056 CCATGAGCCGCCTGGATT 59.806 61.111 0.00 0.00 37.49 3.01
516 565 1.340248 GAGACCACCTCACGAAGTTCA 59.660 52.381 3.32 0.00 41.61 3.18
606 655 2.124942 GCCTCCGCCTTCTCTTGG 60.125 66.667 0.00 0.00 0.00 3.61
609 658 1.153745 CTCCGCCTTCTCTTGGACG 60.154 63.158 0.00 0.00 0.00 4.79
631 680 3.978723 CTGTCCTGCCGCTCTCACG 62.979 68.421 0.00 0.00 0.00 4.35
632 681 3.749064 GTCCTGCCGCTCTCACGA 61.749 66.667 0.00 0.00 34.06 4.35
649 698 0.164647 CGAGCGCTCTTGGACAAAAG 59.835 55.000 32.88 11.25 0.00 2.27
673 722 3.587797 ACCACGACGTATGTCTTTCAT 57.412 42.857 13.11 0.00 43.21 2.57
700 749 3.749088 CCAAACAACATGCTTGCAATCAT 59.251 39.130 9.94 9.94 0.00 2.45
720 769 4.487412 GGCGTGCTGATGGCTTGC 62.487 66.667 0.00 0.00 42.39 4.01
732 781 0.038021 TGGCTTGCCTCTAATGCACA 59.962 50.000 13.18 0.00 38.72 4.57
878 942 7.592885 AGGAACCTAATAAACGCTCATACTA 57.407 36.000 0.00 0.00 0.00 1.82
1262 1341 3.138798 GTACGAGCTCGCCCTCCA 61.139 66.667 34.83 11.16 44.43 3.86
1563 1642 1.292941 CCTCCTCCTCCTCCTCCTCA 61.293 65.000 0.00 0.00 0.00 3.86
1728 1810 2.113774 CAGCAACCAGGTCCTGCA 59.886 61.111 17.06 0.00 38.58 4.41
1980 2062 2.297033 TGAAAAATGCAGCTTCCAGACC 59.703 45.455 0.00 0.00 0.00 3.85
2019 2101 0.034186 AGCGCTTCCCATCATCCAAA 60.034 50.000 2.64 0.00 0.00 3.28
2085 2167 3.126514 CCATCACTTGCACATCAGAACTC 59.873 47.826 0.00 0.00 0.00 3.01
2421 2503 1.939934 CAGTTTGCAGAACTGTTCCGA 59.060 47.619 22.81 0.16 41.90 4.55
2436 2518 0.774908 TCCGAAACCAGGTTGGGATT 59.225 50.000 17.73 0.00 43.37 3.01
2448 2530 1.026584 TTGGGATTGATGCTGATGCG 58.973 50.000 0.00 0.00 43.34 4.73
2544 2626 3.160269 CCAATCCCTATTTGAGATGGCC 58.840 50.000 0.00 0.00 0.00 5.36
2646 2728 3.386078 TCCCTCTTGATGAATCTTCTCCG 59.614 47.826 0.00 0.00 0.00 4.63
2907 2989 1.227497 GGAGAAGATGAGGGCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
2976 3058 2.342279 CCTGGTGCGACCGAGAAA 59.658 61.111 0.00 0.00 42.58 2.52
2995 3077 6.564873 CGAGAAAGATGAGGTGTTGAAGAAAC 60.565 42.308 0.00 0.00 39.41 2.78
3058 3140 2.284478 AGGAGGCAGCTGAGCAGA 60.284 61.111 20.43 0.00 35.83 4.26
3309 3394 3.891366 CAGGAAGTTCCCAAACAAGTGAT 59.109 43.478 18.65 0.00 37.19 3.06
3324 3409 4.338400 ACAAGTGATGGCATTGATGATGAG 59.662 41.667 0.00 0.00 38.03 2.90
3500 3587 2.766313 TGATTTGCAGAACTAGCGTGT 58.234 42.857 0.00 0.00 33.85 4.49
3504 3591 2.631418 TGCAGAACTAGCGTGTACTC 57.369 50.000 0.00 0.00 33.85 2.59
3535 3622 6.361748 GCTTCAAACATCTTGATCTGTTTCAC 59.638 38.462 7.60 0.00 42.16 3.18
3543 3630 5.838529 TCTTGATCTGTTTCACGTGTCTTA 58.161 37.500 16.51 0.00 0.00 2.10
3591 3678 5.696724 CGGTTTCAAGGTATATGATGGAGAC 59.303 44.000 0.00 0.00 0.00 3.36
3614 3701 8.890718 AGACTTTTGAAGTAGTTAACCACTTTC 58.109 33.333 18.50 11.76 43.03 2.62
3622 3709 2.876550 AGTTAACCACTTTCAAGACCGC 59.123 45.455 0.88 0.00 27.32 5.68
3713 3925 3.935203 CAGTGATACAGATTGTCACACCC 59.065 47.826 7.39 0.00 43.51 4.61
3737 4055 6.020837 CCGAGATTTACGTGTAGTTTCTTAGC 60.021 42.308 0.00 0.00 0.00 3.09
3747 4065 9.865321 ACGTGTAGTTTCTTAGCTATATCAAAA 57.135 29.630 0.00 0.00 0.00 2.44
3780 4098 1.443407 CTAGTATGTGCCAGGCGCT 59.557 57.895 25.50 13.44 40.03 5.92
3815 4133 2.290367 CTCTGTTCGGTTGTGATGCAAA 59.710 45.455 0.00 0.00 39.03 3.68
3845 4163 0.948678 TTGTCACAGCCCGCTAAAAC 59.051 50.000 0.00 0.00 0.00 2.43
3847 4165 0.605589 GTCACAGCCCGCTAAAACCT 60.606 55.000 0.00 0.00 0.00 3.50
3954 4273 4.041198 TCCAGAGAACGGGAAATAAACAGT 59.959 41.667 0.00 0.00 37.43 3.55
3962 4286 7.499895 AGAACGGGAAATAAACAGTACTTTCAA 59.500 33.333 0.00 0.00 30.90 2.69
3997 4321 9.794685 CATATCAGAGCTATAACATAATGTCGT 57.205 33.333 0.00 0.00 0.00 4.34
3998 4322 9.794685 ATATCAGAGCTATAACATAATGTCGTG 57.205 33.333 0.00 0.00 0.00 4.35
3999 4323 6.447162 TCAGAGCTATAACATAATGTCGTGG 58.553 40.000 0.00 0.00 0.00 4.94
4000 4324 6.264518 TCAGAGCTATAACATAATGTCGTGGA 59.735 38.462 0.00 0.00 0.00 4.02
4001 4325 6.923508 CAGAGCTATAACATAATGTCGTGGAA 59.076 38.462 0.00 0.00 0.00 3.53
4002 4326 7.600375 CAGAGCTATAACATAATGTCGTGGAAT 59.400 37.037 0.00 0.00 0.00 3.01
4003 4327 8.150945 AGAGCTATAACATAATGTCGTGGAATT 58.849 33.333 0.00 0.00 0.00 2.17
4004 4328 8.087982 AGCTATAACATAATGTCGTGGAATTG 57.912 34.615 0.00 0.00 0.00 2.32
4005 4329 7.715249 AGCTATAACATAATGTCGTGGAATTGT 59.285 33.333 0.00 0.00 0.00 2.71
4006 4330 8.009974 GCTATAACATAATGTCGTGGAATTGTC 58.990 37.037 0.00 0.00 0.00 3.18
4007 4331 7.857734 ATAACATAATGTCGTGGAATTGTCA 57.142 32.000 0.00 0.00 0.00 3.58
4008 4332 5.545658 ACATAATGTCGTGGAATTGTCAC 57.454 39.130 0.00 0.00 0.00 3.67
4014 4338 2.927004 GTGGAATTGTCACGGCAGA 58.073 52.632 0.00 0.00 0.00 4.26
4015 4339 1.453155 GTGGAATTGTCACGGCAGAT 58.547 50.000 0.00 0.00 0.00 2.90
4016 4340 1.131126 GTGGAATTGTCACGGCAGATG 59.869 52.381 0.00 0.00 0.00 2.90
4017 4341 1.271325 TGGAATTGTCACGGCAGATGT 60.271 47.619 0.00 0.00 0.00 3.06
4018 4342 1.398390 GGAATTGTCACGGCAGATGTC 59.602 52.381 0.00 0.00 0.00 3.06
4019 4343 1.398390 GAATTGTCACGGCAGATGTCC 59.602 52.381 0.00 0.00 0.00 4.02
4020 4344 0.615331 ATTGTCACGGCAGATGTCCT 59.385 50.000 0.00 0.00 0.00 3.85
4021 4345 0.037326 TTGTCACGGCAGATGTCCTC 60.037 55.000 0.00 0.00 0.00 3.71
4022 4346 1.184970 TGTCACGGCAGATGTCCTCA 61.185 55.000 0.00 0.00 0.00 3.86
4023 4347 0.037326 GTCACGGCAGATGTCCTCAA 60.037 55.000 0.00 0.00 0.00 3.02
4024 4348 0.247460 TCACGGCAGATGTCCTCAAG 59.753 55.000 0.00 0.00 0.00 3.02
4025 4349 1.078848 ACGGCAGATGTCCTCAAGC 60.079 57.895 0.00 0.00 0.00 4.01
4026 4350 1.220206 CGGCAGATGTCCTCAAGCT 59.780 57.895 0.00 0.00 0.00 3.74
4027 4351 0.461548 CGGCAGATGTCCTCAAGCTA 59.538 55.000 0.00 0.00 0.00 3.32
4028 4352 1.537776 CGGCAGATGTCCTCAAGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
4029 4353 1.202627 GGCAGATGTCCTCAAGCTAGG 60.203 57.143 0.00 0.00 38.06 3.02
4030 4354 1.759445 GCAGATGTCCTCAAGCTAGGA 59.241 52.381 0.72 0.72 43.58 2.94
4038 4362 3.280295 TCCTCAAGCTAGGACTTAGTCG 58.720 50.000 6.27 0.00 40.86 4.18
4039 4363 3.018149 CCTCAAGCTAGGACTTAGTCGT 58.982 50.000 12.28 12.28 39.15 4.34
4040 4364 3.181495 CCTCAAGCTAGGACTTAGTCGTG 60.181 52.174 16.60 8.49 39.15 4.35
4041 4365 2.753452 TCAAGCTAGGACTTAGTCGTGG 59.247 50.000 16.60 14.69 32.77 4.94
4042 4366 2.753452 CAAGCTAGGACTTAGTCGTGGA 59.247 50.000 19.72 0.65 32.19 4.02
4043 4367 2.645802 AGCTAGGACTTAGTCGTGGAG 58.354 52.381 19.72 10.61 32.19 3.86
4044 4368 1.065851 GCTAGGACTTAGTCGTGGAGC 59.934 57.143 19.72 15.76 32.19 4.70
4045 4369 1.677052 CTAGGACTTAGTCGTGGAGCC 59.323 57.143 16.60 0.00 32.19 4.70
4046 4370 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
4047 4371 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
4048 4372 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
4049 4373 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
4050 4374 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
4051 4375 2.292794 TTAGTCGTGGAGCCATCGCC 62.293 60.000 0.00 0.00 34.57 5.54
4055 4379 4.221422 GTGGAGCCATCGCCGCTA 62.221 66.667 0.00 0.00 39.23 4.26
4056 4380 3.916544 TGGAGCCATCGCCGCTAG 61.917 66.667 0.00 0.00 36.48 3.42
4057 4381 3.606662 GGAGCCATCGCCGCTAGA 61.607 66.667 0.00 0.00 36.48 2.43
4058 4382 2.417516 GAGCCATCGCCGCTAGAA 59.582 61.111 0.00 0.00 36.48 2.10
4059 4383 1.227263 GAGCCATCGCCGCTAGAAA 60.227 57.895 0.00 0.00 36.48 2.52
4060 4384 1.218230 GAGCCATCGCCGCTAGAAAG 61.218 60.000 0.00 0.00 36.48 2.62
4061 4385 2.886782 GCCATCGCCGCTAGAAAGC 61.887 63.158 0.00 0.00 45.86 3.51
4071 4395 2.498644 GCTAGAAAGCTTGAAGGGGT 57.501 50.000 0.00 0.00 45.85 4.95
4072 4396 2.796557 GCTAGAAAGCTTGAAGGGGTT 58.203 47.619 0.00 0.00 45.85 4.11
4073 4397 3.951663 GCTAGAAAGCTTGAAGGGGTTA 58.048 45.455 0.00 0.00 45.85 2.85
4074 4398 4.332828 GCTAGAAAGCTTGAAGGGGTTAA 58.667 43.478 0.00 0.00 45.85 2.01
4075 4399 4.765339 GCTAGAAAGCTTGAAGGGGTTAAA 59.235 41.667 0.00 0.00 45.85 1.52
4076 4400 5.335740 GCTAGAAAGCTTGAAGGGGTTAAAC 60.336 44.000 0.00 0.00 45.85 2.01
4077 4401 3.568430 AGAAAGCTTGAAGGGGTTAAACG 59.432 43.478 0.00 0.00 0.00 3.60
4078 4402 1.905637 AGCTTGAAGGGGTTAAACGG 58.094 50.000 0.00 0.00 0.00 4.44
4079 4403 0.885879 GCTTGAAGGGGTTAAACGGG 59.114 55.000 0.00 0.00 0.00 5.28
4080 4404 1.546099 GCTTGAAGGGGTTAAACGGGA 60.546 52.381 0.00 0.00 0.00 5.14
4081 4405 2.156917 CTTGAAGGGGTTAAACGGGAC 58.843 52.381 0.00 0.00 0.00 4.46
4082 4406 1.138568 TGAAGGGGTTAAACGGGACA 58.861 50.000 0.00 0.00 0.00 4.02
4083 4407 1.493871 TGAAGGGGTTAAACGGGACAA 59.506 47.619 0.00 0.00 0.00 3.18
4084 4408 2.156917 GAAGGGGTTAAACGGGACAAG 58.843 52.381 0.00 0.00 0.00 3.16
4085 4409 0.402887 AGGGGTTAAACGGGACAAGG 59.597 55.000 0.00 0.00 0.00 3.61
4086 4410 0.401356 GGGGTTAAACGGGACAAGGA 59.599 55.000 0.00 0.00 0.00 3.36
4087 4411 1.202915 GGGGTTAAACGGGACAAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
4088 4412 1.881973 GGGTTAAACGGGACAAGGAAC 59.118 52.381 0.00 0.00 0.00 3.62
4089 4413 2.574450 GGTTAAACGGGACAAGGAACA 58.426 47.619 0.00 0.00 0.00 3.18
4090 4414 2.291465 GGTTAAACGGGACAAGGAACAC 59.709 50.000 0.00 0.00 0.00 3.32
4091 4415 1.868469 TAAACGGGACAAGGAACACG 58.132 50.000 0.00 0.00 38.94 4.49
4092 4416 0.178533 AAACGGGACAAGGAACACGA 59.821 50.000 0.00 0.00 36.71 4.35
4093 4417 0.249741 AACGGGACAAGGAACACGAG 60.250 55.000 0.00 0.00 36.71 4.18
4094 4418 1.374252 CGGGACAAGGAACACGAGG 60.374 63.158 0.00 0.00 34.69 4.63
4095 4419 1.003718 GGGACAAGGAACACGAGGG 60.004 63.158 0.00 0.00 0.00 4.30
4096 4420 1.752833 GGACAAGGAACACGAGGGT 59.247 57.895 0.00 0.00 0.00 4.34
4097 4421 0.108019 GGACAAGGAACACGAGGGTT 59.892 55.000 0.00 0.00 0.00 4.11
4098 4422 1.476291 GGACAAGGAACACGAGGGTTT 60.476 52.381 0.00 0.00 0.00 3.27
4099 4423 2.224354 GGACAAGGAACACGAGGGTTTA 60.224 50.000 0.00 0.00 0.00 2.01
4100 4424 3.558533 GGACAAGGAACACGAGGGTTTAT 60.559 47.826 0.00 0.00 0.00 1.40
4101 4425 4.322953 GGACAAGGAACACGAGGGTTTATA 60.323 45.833 0.00 0.00 0.00 0.98
4102 4426 4.572909 ACAAGGAACACGAGGGTTTATAC 58.427 43.478 0.00 0.00 0.00 1.47
4103 4427 4.285260 ACAAGGAACACGAGGGTTTATACT 59.715 41.667 0.00 0.00 0.00 2.12
4104 4428 4.467198 AGGAACACGAGGGTTTATACTG 57.533 45.455 0.00 0.00 0.00 2.74
4105 4429 3.197116 AGGAACACGAGGGTTTATACTGG 59.803 47.826 0.00 0.00 0.00 4.00
4106 4430 3.055602 GGAACACGAGGGTTTATACTGGT 60.056 47.826 0.00 0.00 0.00 4.00
4107 4431 4.564199 GGAACACGAGGGTTTATACTGGTT 60.564 45.833 0.00 0.00 0.00 3.67
4108 4432 4.198028 ACACGAGGGTTTATACTGGTTC 57.802 45.455 0.00 0.00 0.00 3.62
4109 4433 3.184541 CACGAGGGTTTATACTGGTTCG 58.815 50.000 0.00 0.00 0.00 3.95
4110 4434 2.167075 ACGAGGGTTTATACTGGTTCGG 59.833 50.000 0.00 0.00 0.00 4.30
4111 4435 2.558378 GAGGGTTTATACTGGTTCGGC 58.442 52.381 0.00 0.00 0.00 5.54
4112 4436 1.211212 AGGGTTTATACTGGTTCGGCC 59.789 52.381 0.00 0.00 37.90 6.13
4113 4437 1.671979 GGTTTATACTGGTTCGGCCC 58.328 55.000 0.00 0.00 36.04 5.80
4114 4438 1.671979 GTTTATACTGGTTCGGCCCC 58.328 55.000 0.00 0.00 36.04 5.80
4115 4439 1.211212 GTTTATACTGGTTCGGCCCCT 59.789 52.381 0.00 0.00 36.04 4.79
4116 4440 1.587066 TTATACTGGTTCGGCCCCTT 58.413 50.000 0.00 0.00 36.04 3.95
4117 4441 2.475339 TATACTGGTTCGGCCCCTTA 57.525 50.000 0.00 0.00 36.04 2.69
4118 4442 0.835276 ATACTGGTTCGGCCCCTTAC 59.165 55.000 0.00 0.00 36.04 2.34
4119 4443 1.606885 TACTGGTTCGGCCCCTTACG 61.607 60.000 0.00 0.00 36.04 3.18
4120 4444 3.675619 CTGGTTCGGCCCCTTACGG 62.676 68.421 0.00 0.00 36.04 4.02
4121 4445 3.709633 GGTTCGGCCCCTTACGGT 61.710 66.667 0.00 0.00 0.00 4.83
4122 4446 2.435410 GTTCGGCCCCTTACGGTG 60.435 66.667 0.00 0.00 0.00 4.94
4123 4447 2.604079 TTCGGCCCCTTACGGTGA 60.604 61.111 0.00 0.00 0.00 4.02
4124 4448 2.215625 TTCGGCCCCTTACGGTGAA 61.216 57.895 0.00 0.00 0.00 3.18
4125 4449 2.125269 CGGCCCCTTACGGTGAAG 60.125 66.667 0.00 0.00 0.00 3.02
4126 4450 2.271173 GGCCCCTTACGGTGAAGG 59.729 66.667 0.00 6.14 44.96 3.46
4127 4451 2.599757 GGCCCCTTACGGTGAAGGT 61.600 63.158 10.90 0.00 44.02 3.50
4128 4452 1.266867 GGCCCCTTACGGTGAAGGTA 61.267 60.000 10.90 0.00 44.02 3.08
4129 4453 0.614812 GCCCCTTACGGTGAAGGTAA 59.385 55.000 10.90 0.00 44.02 2.85
4130 4454 1.003464 GCCCCTTACGGTGAAGGTAAA 59.997 52.381 10.90 0.00 44.02 2.01
4131 4455 2.552809 GCCCCTTACGGTGAAGGTAAAA 60.553 50.000 10.90 0.00 44.02 1.52
4132 4456 3.340928 CCCCTTACGGTGAAGGTAAAAG 58.659 50.000 10.90 0.00 44.02 2.27
4133 4457 2.745821 CCCTTACGGTGAAGGTAAAAGC 59.254 50.000 10.90 0.00 44.02 3.51
4134 4458 2.745821 CCTTACGGTGAAGGTAAAAGCC 59.254 50.000 5.17 0.00 41.09 4.35
4135 4459 3.558533 CCTTACGGTGAAGGTAAAAGCCT 60.559 47.826 5.17 0.00 41.09 4.58
4136 4460 4.322953 CCTTACGGTGAAGGTAAAAGCCTA 60.323 45.833 5.17 0.00 41.09 3.93
4137 4461 3.049708 ACGGTGAAGGTAAAAGCCTAC 57.950 47.619 0.00 0.00 38.03 3.18
4138 4462 1.997606 CGGTGAAGGTAAAAGCCTACG 59.002 52.381 0.00 0.00 38.03 3.51
4139 4463 2.611224 CGGTGAAGGTAAAAGCCTACGT 60.611 50.000 0.00 0.00 38.03 3.57
4140 4464 2.998670 GGTGAAGGTAAAAGCCTACGTC 59.001 50.000 0.00 0.00 38.03 4.34
4141 4465 2.998670 GTGAAGGTAAAAGCCTACGTCC 59.001 50.000 0.00 0.00 38.03 4.79
4142 4466 2.633967 TGAAGGTAAAAGCCTACGTCCA 59.366 45.455 0.00 0.00 38.03 4.02
4143 4467 3.259902 GAAGGTAAAAGCCTACGTCCAG 58.740 50.000 0.00 0.00 38.03 3.86
4144 4468 2.254508 AGGTAAAAGCCTACGTCCAGT 58.745 47.619 0.00 0.00 37.04 4.00
4145 4469 2.636403 AGGTAAAAGCCTACGTCCAGTT 59.364 45.455 0.00 0.00 37.04 3.16
4146 4470 2.740447 GGTAAAAGCCTACGTCCAGTTG 59.260 50.000 0.00 0.00 0.00 3.16
4147 4471 2.922740 AAAAGCCTACGTCCAGTTGA 57.077 45.000 0.00 0.00 0.00 3.18
4148 4472 2.457366 AAAGCCTACGTCCAGTTGAG 57.543 50.000 0.00 0.00 0.00 3.02
4149 4473 0.608640 AAGCCTACGTCCAGTTGAGG 59.391 55.000 0.00 0.00 32.83 3.86
4150 4474 0.542232 AGCCTACGTCCAGTTGAGGT 60.542 55.000 0.00 0.00 44.01 3.85
4151 4475 0.389948 GCCTACGTCCAGTTGAGGTG 60.390 60.000 0.00 0.00 41.90 4.00
4152 4476 0.246635 CCTACGTCCAGTTGAGGTGG 59.753 60.000 0.00 0.00 41.90 4.61
4153 4477 0.966920 CTACGTCCAGTTGAGGTGGT 59.033 55.000 0.00 0.00 41.90 4.16
4154 4478 2.165167 CTACGTCCAGTTGAGGTGGTA 58.835 52.381 0.00 0.00 41.90 3.25
4155 4479 1.640917 ACGTCCAGTTGAGGTGGTAT 58.359 50.000 0.00 0.00 40.44 2.73
4156 4480 1.975680 ACGTCCAGTTGAGGTGGTATT 59.024 47.619 0.00 0.00 40.44 1.89
4157 4481 2.289444 ACGTCCAGTTGAGGTGGTATTG 60.289 50.000 0.00 0.00 40.44 1.90
4158 4482 2.028476 CGTCCAGTTGAGGTGGTATTGA 60.028 50.000 0.00 0.00 36.37 2.57
4159 4483 3.369471 CGTCCAGTTGAGGTGGTATTGAT 60.369 47.826 0.00 0.00 36.37 2.57
4160 4484 4.589908 GTCCAGTTGAGGTGGTATTGATT 58.410 43.478 0.00 0.00 36.37 2.57
4161 4485 5.625886 CGTCCAGTTGAGGTGGTATTGATTA 60.626 44.000 0.00 0.00 36.37 1.75
4162 4486 5.817816 GTCCAGTTGAGGTGGTATTGATTAG 59.182 44.000 0.00 0.00 36.37 1.73
4163 4487 5.104527 TCCAGTTGAGGTGGTATTGATTAGG 60.105 44.000 0.00 0.00 36.37 2.69
4164 4488 5.339200 CCAGTTGAGGTGGTATTGATTAGGT 60.339 44.000 0.00 0.00 0.00 3.08
4165 4489 6.180472 CAGTTGAGGTGGTATTGATTAGGTT 58.820 40.000 0.00 0.00 0.00 3.50
4166 4490 6.659242 CAGTTGAGGTGGTATTGATTAGGTTT 59.341 38.462 0.00 0.00 0.00 3.27
4167 4491 6.884836 AGTTGAGGTGGTATTGATTAGGTTTC 59.115 38.462 0.00 0.00 0.00 2.78
4168 4492 5.424757 TGAGGTGGTATTGATTAGGTTTCG 58.575 41.667 0.00 0.00 0.00 3.46
4169 4493 5.188163 TGAGGTGGTATTGATTAGGTTTCGA 59.812 40.000 0.00 0.00 0.00 3.71
4170 4494 6.126883 TGAGGTGGTATTGATTAGGTTTCGAT 60.127 38.462 0.00 0.00 0.00 3.59
4171 4495 6.055588 AGGTGGTATTGATTAGGTTTCGATG 58.944 40.000 0.00 0.00 0.00 3.84
4172 4496 6.053005 GGTGGTATTGATTAGGTTTCGATGA 58.947 40.000 0.00 0.00 0.00 2.92
4173 4497 6.018180 GGTGGTATTGATTAGGTTTCGATGAC 60.018 42.308 0.00 0.00 0.00 3.06
4174 4498 6.018180 GTGGTATTGATTAGGTTTCGATGACC 60.018 42.308 9.79 9.79 37.44 4.02
4175 4499 6.053005 GGTATTGATTAGGTTTCGATGACCA 58.947 40.000 17.68 2.13 39.71 4.02
4176 4500 6.202954 GGTATTGATTAGGTTTCGATGACCAG 59.797 42.308 17.68 0.00 39.71 4.00
4177 4501 4.137116 TGATTAGGTTTCGATGACCAGG 57.863 45.455 17.68 0.00 39.71 4.45
4178 4502 3.118408 TGATTAGGTTTCGATGACCAGGG 60.118 47.826 17.68 0.00 39.71 4.45
4179 4503 2.241281 TAGGTTTCGATGACCAGGGA 57.759 50.000 17.68 1.42 39.71 4.20
4180 4504 0.905357 AGGTTTCGATGACCAGGGAG 59.095 55.000 17.68 0.00 39.71 4.30
4181 4505 0.744771 GGTTTCGATGACCAGGGAGC 60.745 60.000 12.26 0.00 37.14 4.70
4182 4506 0.250513 GTTTCGATGACCAGGGAGCT 59.749 55.000 0.00 0.00 0.00 4.09
4183 4507 0.984230 TTTCGATGACCAGGGAGCTT 59.016 50.000 0.00 0.00 0.00 3.74
4184 4508 1.860641 TTCGATGACCAGGGAGCTTA 58.139 50.000 0.00 0.00 0.00 3.09
4185 4509 1.860641 TCGATGACCAGGGAGCTTAA 58.139 50.000 0.00 0.00 0.00 1.85
4186 4510 1.480954 TCGATGACCAGGGAGCTTAAC 59.519 52.381 0.00 0.00 0.00 2.01
4187 4511 1.482593 CGATGACCAGGGAGCTTAACT 59.517 52.381 0.00 0.00 0.00 2.24
4188 4512 2.739932 CGATGACCAGGGAGCTTAACTG 60.740 54.545 6.34 6.34 0.00 3.16
4189 4513 0.324943 TGACCAGGGAGCTTAACTGC 59.675 55.000 7.50 0.00 35.62 4.40
4191 4515 1.831736 GACCAGGGAGCTTAACTGCTA 59.168 52.381 7.50 0.00 44.17 3.49
4192 4516 2.436173 GACCAGGGAGCTTAACTGCTAT 59.564 50.000 7.50 0.00 44.17 2.97
4193 4517 2.171448 ACCAGGGAGCTTAACTGCTATG 59.829 50.000 7.50 0.00 44.17 2.23
4194 4518 2.216898 CAGGGAGCTTAACTGCTATGC 58.783 52.381 0.00 0.00 44.17 3.14
4195 4519 1.141858 AGGGAGCTTAACTGCTATGCC 59.858 52.381 0.00 0.00 44.17 4.40
4196 4520 1.141858 GGGAGCTTAACTGCTATGCCT 59.858 52.381 0.00 0.00 44.17 4.75
4197 4521 2.216898 GGAGCTTAACTGCTATGCCTG 58.783 52.381 0.00 0.00 44.17 4.85
4198 4522 2.216898 GAGCTTAACTGCTATGCCTGG 58.783 52.381 0.00 0.00 44.17 4.45
4199 4523 0.665298 GCTTAACTGCTATGCCTGGC 59.335 55.000 12.87 12.87 0.00 4.85
4200 4524 1.748591 GCTTAACTGCTATGCCTGGCT 60.749 52.381 21.03 8.02 0.00 4.75
4201 4525 2.648059 CTTAACTGCTATGCCTGGCTT 58.352 47.619 21.03 16.33 0.00 4.35
4202 4526 2.806945 TAACTGCTATGCCTGGCTTT 57.193 45.000 21.03 9.99 0.00 3.51
4203 4527 1.467920 AACTGCTATGCCTGGCTTTC 58.532 50.000 21.03 9.49 0.00 2.62
4204 4528 0.745845 ACTGCTATGCCTGGCTTTCG 60.746 55.000 21.03 9.35 0.00 3.46
4205 4529 0.462581 CTGCTATGCCTGGCTTTCGA 60.463 55.000 21.03 0.00 0.00 3.71
4206 4530 0.744414 TGCTATGCCTGGCTTTCGAC 60.744 55.000 21.03 5.23 0.00 4.20
4207 4531 1.766143 GCTATGCCTGGCTTTCGACG 61.766 60.000 21.03 2.61 0.00 5.12
4208 4532 0.179111 CTATGCCTGGCTTTCGACGA 60.179 55.000 21.03 0.00 0.00 4.20
4209 4533 0.179111 TATGCCTGGCTTTCGACGAG 60.179 55.000 21.03 0.00 0.00 4.18
4210 4534 1.888436 ATGCCTGGCTTTCGACGAGA 61.888 55.000 21.03 0.00 0.00 4.04
4211 4535 1.153549 GCCTGGCTTTCGACGAGAT 60.154 57.895 12.43 0.00 0.00 2.75
4212 4536 1.148759 GCCTGGCTTTCGACGAGATC 61.149 60.000 12.43 0.00 0.00 2.75
4213 4537 0.457851 CCTGGCTTTCGACGAGATCT 59.542 55.000 0.00 0.00 0.00 2.75
4214 4538 1.134965 CCTGGCTTTCGACGAGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
4215 4539 2.189342 CTGGCTTTCGACGAGATCTTC 58.811 52.381 0.00 0.00 0.00 2.87
4216 4540 1.819288 TGGCTTTCGACGAGATCTTCT 59.181 47.619 0.00 0.00 0.00 2.85
4217 4541 2.231478 TGGCTTTCGACGAGATCTTCTT 59.769 45.455 0.00 0.00 0.00 2.52
4218 4542 3.442625 TGGCTTTCGACGAGATCTTCTTA 59.557 43.478 0.00 0.00 0.00 2.10
4219 4543 3.792421 GGCTTTCGACGAGATCTTCTTAC 59.208 47.826 0.00 0.00 0.00 2.34
4220 4544 3.792421 GCTTTCGACGAGATCTTCTTACC 59.208 47.826 0.00 0.00 0.00 2.85
4221 4545 4.352887 CTTTCGACGAGATCTTCTTACCC 58.647 47.826 0.00 0.00 0.00 3.69
4222 4546 2.295885 TCGACGAGATCTTCTTACCCC 58.704 52.381 0.00 0.00 0.00 4.95
4223 4547 2.092538 TCGACGAGATCTTCTTACCCCT 60.093 50.000 0.00 0.00 0.00 4.79
4224 4548 3.135348 TCGACGAGATCTTCTTACCCCTA 59.865 47.826 0.00 0.00 0.00 3.53
4225 4549 3.881688 CGACGAGATCTTCTTACCCCTAA 59.118 47.826 0.00 0.00 0.00 2.69
4226 4550 4.337555 CGACGAGATCTTCTTACCCCTAAA 59.662 45.833 0.00 0.00 0.00 1.85
4227 4551 5.590145 GACGAGATCTTCTTACCCCTAAAC 58.410 45.833 0.00 0.00 0.00 2.01
4228 4552 4.405036 ACGAGATCTTCTTACCCCTAAACC 59.595 45.833 0.00 0.00 0.00 3.27
4229 4553 4.499357 CGAGATCTTCTTACCCCTAAACCG 60.499 50.000 0.00 0.00 0.00 4.44
4230 4554 3.134262 AGATCTTCTTACCCCTAAACCGC 59.866 47.826 0.00 0.00 0.00 5.68
4231 4555 2.543635 TCTTCTTACCCCTAAACCGCT 58.456 47.619 0.00 0.00 0.00 5.52
4232 4556 2.235402 TCTTCTTACCCCTAAACCGCTG 59.765 50.000 0.00 0.00 0.00 5.18
4233 4557 0.251073 TCTTACCCCTAAACCGCTGC 59.749 55.000 0.00 0.00 0.00 5.25
4234 4558 0.746923 CTTACCCCTAAACCGCTGCC 60.747 60.000 0.00 0.00 0.00 4.85
4235 4559 2.524951 TTACCCCTAAACCGCTGCCG 62.525 60.000 0.00 0.00 0.00 5.69
4258 4582 5.900865 GGTCGTCCCTTTATATAGAGAGG 57.099 47.826 1.86 0.00 0.00 3.69
4259 4583 5.323581 GGTCGTCCCTTTATATAGAGAGGT 58.676 45.833 3.48 0.00 0.00 3.85
4260 4584 5.774184 GGTCGTCCCTTTATATAGAGAGGTT 59.226 44.000 3.48 0.00 0.00 3.50
4261 4585 6.294620 GGTCGTCCCTTTATATAGAGAGGTTG 60.295 46.154 3.48 0.00 0.00 3.77
4262 4586 6.489361 GTCGTCCCTTTATATAGAGAGGTTGA 59.511 42.308 3.48 0.00 0.00 3.18
4263 4587 6.489361 TCGTCCCTTTATATAGAGAGGTTGAC 59.511 42.308 3.48 3.95 0.00 3.18
4264 4588 6.568081 CGTCCCTTTATATAGAGAGGTTGACG 60.568 46.154 15.92 15.92 37.50 4.35
4265 4589 5.243283 TCCCTTTATATAGAGAGGTTGACGC 59.757 44.000 3.48 0.00 0.00 5.19
4266 4590 5.471257 CCTTTATATAGAGAGGTTGACGCC 58.529 45.833 1.86 0.00 0.00 5.68
4267 4591 5.464030 TTTATATAGAGAGGTTGACGCCC 57.536 43.478 0.00 0.00 0.00 6.13
4268 4592 2.447408 TATAGAGAGGTTGACGCCCA 57.553 50.000 0.00 0.00 0.00 5.36
4269 4593 1.115467 ATAGAGAGGTTGACGCCCAG 58.885 55.000 0.00 0.00 0.00 4.45
4270 4594 1.605058 TAGAGAGGTTGACGCCCAGC 61.605 60.000 0.00 0.00 0.00 4.85
4271 4595 3.240134 GAGAGGTTGACGCCCAGCA 62.240 63.158 0.00 0.00 0.00 4.41
4272 4596 2.743928 GAGGTTGACGCCCAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
4275 4599 3.426568 GTTGACGCCCAGCAGCTC 61.427 66.667 0.00 0.00 0.00 4.09
4276 4600 3.630013 TTGACGCCCAGCAGCTCT 61.630 61.111 0.00 0.00 0.00 4.09
4277 4601 3.596066 TTGACGCCCAGCAGCTCTC 62.596 63.158 0.00 0.00 0.00 3.20
4278 4602 4.074526 GACGCCCAGCAGCTCTCA 62.075 66.667 0.00 0.00 0.00 3.27
4279 4603 4.079850 ACGCCCAGCAGCTCTCAG 62.080 66.667 0.00 0.00 0.00 3.35
4280 4604 3.767806 CGCCCAGCAGCTCTCAGA 61.768 66.667 0.00 0.00 0.00 3.27
4281 4605 2.187424 GCCCAGCAGCTCTCAGAG 59.813 66.667 0.00 0.00 0.00 3.35
4282 4606 2.658064 GCCCAGCAGCTCTCAGAGT 61.658 63.158 2.93 0.00 31.39 3.24
4283 4607 1.516892 CCCAGCAGCTCTCAGAGTC 59.483 63.158 2.93 0.00 31.39 3.36
4284 4608 1.516892 CCAGCAGCTCTCAGAGTCC 59.483 63.158 2.93 0.00 31.39 3.85
4285 4609 1.516892 CAGCAGCTCTCAGAGTCCC 59.483 63.158 2.93 0.00 31.39 4.46
4286 4610 2.051518 AGCAGCTCTCAGAGTCCCG 61.052 63.158 2.93 0.00 31.39 5.14
4287 4611 3.074999 GCAGCTCTCAGAGTCCCGG 62.075 68.421 2.93 0.00 31.39 5.73
4288 4612 2.757917 AGCTCTCAGAGTCCCGGC 60.758 66.667 2.93 0.00 31.39 6.13
4289 4613 3.844090 GCTCTCAGAGTCCCGGCC 61.844 72.222 2.93 0.00 31.39 6.13
4290 4614 3.522731 CTCTCAGAGTCCCGGCCG 61.523 72.222 21.04 21.04 0.00 6.13
4297 4621 4.853142 AGTCCCGGCCGGCTCATA 62.853 66.667 39.46 17.51 0.00 2.15
4298 4622 3.857038 GTCCCGGCCGGCTCATAA 61.857 66.667 39.46 15.60 0.00 1.90
4299 4623 3.546543 TCCCGGCCGGCTCATAAG 61.547 66.667 39.46 22.98 0.00 1.73
4300 4624 3.546543 CCCGGCCGGCTCATAAGA 61.547 66.667 39.46 0.00 0.00 2.10
4301 4625 2.029666 CCGGCCGGCTCATAAGAG 59.970 66.667 34.96 3.26 44.96 2.85
4302 4626 2.797278 CCGGCCGGCTCATAAGAGT 61.797 63.158 34.96 0.00 44.00 3.24
4303 4627 1.592669 CGGCCGGCTCATAAGAGTG 60.593 63.158 28.56 0.00 44.00 3.51
4304 4628 1.522569 GGCCGGCTCATAAGAGTGT 59.477 57.895 28.56 0.00 44.00 3.55
4305 4629 0.530870 GGCCGGCTCATAAGAGTGTC 60.531 60.000 28.56 0.00 44.00 3.67
4306 4630 0.530870 GCCGGCTCATAAGAGTGTCC 60.531 60.000 22.15 0.00 44.00 4.02
4307 4631 0.249073 CCGGCTCATAAGAGTGTCCG 60.249 60.000 5.77 5.77 44.00 4.79
4308 4632 0.249073 CGGCTCATAAGAGTGTCCGG 60.249 60.000 0.00 0.00 44.00 5.14
4309 4633 0.530870 GGCTCATAAGAGTGTCCGGC 60.531 60.000 0.00 0.00 44.00 6.13
4310 4634 0.461961 GCTCATAAGAGTGTCCGGCT 59.538 55.000 0.00 0.00 44.00 5.52
4311 4635 1.537135 GCTCATAAGAGTGTCCGGCTC 60.537 57.143 0.00 0.00 44.00 4.70
4312 4636 0.738975 TCATAAGAGTGTCCGGCTCG 59.261 55.000 0.00 0.00 37.99 5.03
4313 4637 4.462118 CTCATAAGAGTGTCCGGCTCGG 62.462 59.091 0.00 7.24 41.72 4.63
4324 4648 2.835431 GGCTCGGGCTCTCAGCTA 60.835 66.667 7.48 0.00 41.99 3.32
4325 4649 2.206536 GGCTCGGGCTCTCAGCTAT 61.207 63.158 7.48 0.00 41.99 2.97
4326 4650 1.745264 GCTCGGGCTCTCAGCTATT 59.255 57.895 0.00 0.00 41.99 1.73
4327 4651 0.319469 GCTCGGGCTCTCAGCTATTC 60.319 60.000 0.00 0.00 41.99 1.75
4328 4652 1.327303 CTCGGGCTCTCAGCTATTCT 58.673 55.000 0.00 0.00 41.99 2.40
4329 4653 1.686052 CTCGGGCTCTCAGCTATTCTT 59.314 52.381 0.00 0.00 41.99 2.52
4330 4654 1.410517 TCGGGCTCTCAGCTATTCTTG 59.589 52.381 0.00 0.00 41.99 3.02
4331 4655 1.137872 CGGGCTCTCAGCTATTCTTGT 59.862 52.381 0.00 0.00 41.99 3.16
4332 4656 2.801342 CGGGCTCTCAGCTATTCTTGTC 60.801 54.545 0.00 0.00 41.99 3.18
4333 4657 2.433970 GGGCTCTCAGCTATTCTTGTCT 59.566 50.000 0.00 0.00 41.99 3.41
4334 4658 3.118445 GGGCTCTCAGCTATTCTTGTCTT 60.118 47.826 0.00 0.00 41.99 3.01
4335 4659 4.100189 GGGCTCTCAGCTATTCTTGTCTTA 59.900 45.833 0.00 0.00 41.99 2.10
4336 4660 5.047188 GGCTCTCAGCTATTCTTGTCTTAC 58.953 45.833 0.00 0.00 41.99 2.34
4337 4661 5.394663 GGCTCTCAGCTATTCTTGTCTTACA 60.395 44.000 0.00 0.00 41.99 2.41
4338 4662 5.518487 GCTCTCAGCTATTCTTGTCTTACAC 59.482 44.000 0.00 0.00 38.45 2.90
4339 4663 6.627065 GCTCTCAGCTATTCTTGTCTTACACT 60.627 42.308 0.00 0.00 38.45 3.55
4340 4664 7.415765 GCTCTCAGCTATTCTTGTCTTACACTA 60.416 40.741 0.00 0.00 38.45 2.74
4341 4665 7.763356 TCTCAGCTATTCTTGTCTTACACTAC 58.237 38.462 0.00 0.00 0.00 2.73
4342 4666 7.393515 TCTCAGCTATTCTTGTCTTACACTACA 59.606 37.037 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 0.652592 GTCCATGATGTGCGCACTAC 59.347 55.000 37.59 29.47 0.00 2.73
158 162 0.175531 CAACAAAATCCCCCGCATCC 59.824 55.000 0.00 0.00 0.00 3.51
189 193 1.523758 GCAGGTTCATCCAACGTTCT 58.476 50.000 0.00 0.00 39.02 3.01
228 232 5.449314 CCAATTTAAACGCCATCCGATACAA 60.449 40.000 0.00 0.00 41.02 2.41
231 235 3.003897 GCCAATTTAAACGCCATCCGATA 59.996 43.478 0.00 0.00 41.02 2.92
232 236 2.223711 GCCAATTTAAACGCCATCCGAT 60.224 45.455 0.00 0.00 41.02 4.18
304 308 2.031012 CTTGGGACGAGCTGTGCA 59.969 61.111 0.00 0.00 41.41 4.57
335 339 1.963464 TAAGGATTCGGCCCGTCCAC 61.963 60.000 14.50 0.00 34.42 4.02
338 362 0.532196 CCTTAAGGATTCGGCCCGTC 60.532 60.000 17.21 0.00 37.39 4.79
373 397 1.134401 CCACTCTGACGCCATGGTTAT 60.134 52.381 14.67 0.00 0.00 1.89
393 442 4.575973 ATCCAGGCGGCTCATGGC 62.576 66.667 9.32 0.00 45.84 4.40
395 444 2.842256 GCAATCCAGGCGGCTCATG 61.842 63.158 9.32 6.99 0.00 3.07
396 445 2.517875 GCAATCCAGGCGGCTCAT 60.518 61.111 9.32 0.39 0.00 2.90
397 446 3.720601 AGCAATCCAGGCGGCTCA 61.721 61.111 9.32 0.00 36.08 4.26
398 447 3.207669 CAGCAATCCAGGCGGCTC 61.208 66.667 9.32 0.00 33.60 4.70
399 448 4.039092 ACAGCAATCCAGGCGGCT 62.039 61.111 5.25 5.25 36.99 5.52
400 449 3.818787 CACAGCAATCCAGGCGGC 61.819 66.667 0.00 0.00 36.08 6.53
401 450 2.535485 TACCACAGCAATCCAGGCGG 62.535 60.000 0.00 0.00 36.08 6.13
402 451 0.464373 ATACCACAGCAATCCAGGCG 60.464 55.000 0.00 0.00 36.08 5.52
403 452 2.104792 TCTATACCACAGCAATCCAGGC 59.895 50.000 0.00 0.00 0.00 4.85
404 453 4.630644 ATCTATACCACAGCAATCCAGG 57.369 45.455 0.00 0.00 0.00 4.45
405 454 5.240183 CCAAATCTATACCACAGCAATCCAG 59.760 44.000 0.00 0.00 0.00 3.86
406 455 5.104151 TCCAAATCTATACCACAGCAATCCA 60.104 40.000 0.00 0.00 0.00 3.41
407 456 5.376625 TCCAAATCTATACCACAGCAATCC 58.623 41.667 0.00 0.00 0.00 3.01
408 457 5.471456 CCTCCAAATCTATACCACAGCAATC 59.529 44.000 0.00 0.00 0.00 2.67
409 458 5.132648 TCCTCCAAATCTATACCACAGCAAT 59.867 40.000 0.00 0.00 0.00 3.56
410 459 4.473196 TCCTCCAAATCTATACCACAGCAA 59.527 41.667 0.00 0.00 0.00 3.91
411 460 4.037222 TCCTCCAAATCTATACCACAGCA 58.963 43.478 0.00 0.00 0.00 4.41
496 545 1.340248 TGAACTTCGTGAGGTGGTCTC 59.660 52.381 0.00 0.00 42.74 3.36
606 655 2.167861 GCGGCAGGACAGATTCGTC 61.168 63.158 0.00 0.00 35.03 4.20
609 658 0.529555 GAGAGCGGCAGGACAGATTC 60.530 60.000 1.45 0.00 0.00 2.52
631 680 0.519077 CCTTTTGTCCAAGAGCGCTC 59.481 55.000 30.01 30.01 0.00 5.03
632 681 0.179018 ACCTTTTGTCCAAGAGCGCT 60.179 50.000 11.27 11.27 0.00 5.92
673 722 3.118992 TGCAAGCATGTTGTTTGGTTACA 60.119 39.130 6.28 0.00 38.72 2.41
732 781 5.559148 TTGGTTGCCCACAAAATTCTATT 57.441 34.783 0.00 0.00 41.67 1.73
803 856 4.761739 CCACTCAGCAATACAGGAAAAGAA 59.238 41.667 0.00 0.00 0.00 2.52
804 857 4.041567 TCCACTCAGCAATACAGGAAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
809 862 2.497675 GACTCCACTCAGCAATACAGGA 59.502 50.000 0.00 0.00 0.00 3.86
810 863 2.234661 TGACTCCACTCAGCAATACAGG 59.765 50.000 0.00 0.00 0.00 4.00
812 865 4.040339 TCTTTGACTCCACTCAGCAATACA 59.960 41.667 0.00 0.00 0.00 2.29
813 866 4.569943 TCTTTGACTCCACTCAGCAATAC 58.430 43.478 0.00 0.00 0.00 1.89
814 867 4.890158 TCTTTGACTCCACTCAGCAATA 57.110 40.909 0.00 0.00 0.00 1.90
815 868 3.777106 TCTTTGACTCCACTCAGCAAT 57.223 42.857 0.00 0.00 0.00 3.56
816 869 3.405831 CATCTTTGACTCCACTCAGCAA 58.594 45.455 0.00 0.00 0.00 3.91
870 934 6.892658 AGTCCAACTCTGCTATAGTATGAG 57.107 41.667 0.84 8.93 0.00 2.90
878 942 2.043227 GGCCTAGTCCAACTCTGCTAT 58.957 52.381 0.00 0.00 0.00 2.97
950 1014 1.205893 ACCGAGAGTGGAATGAAGAGC 59.794 52.381 0.00 0.00 0.00 4.09
1176 1255 3.921767 CTCCTTGAGCTCGTGCGCA 62.922 63.158 5.66 5.66 46.71 6.09
1576 1658 4.653888 GGTGGGTTCGTGGGTGGG 62.654 72.222 0.00 0.00 0.00 4.61
1674 1756 1.128692 GACGGAGGCGATTGTTTCTTG 59.871 52.381 0.00 0.00 0.00 3.02
1709 1791 2.113774 CAGGACCTGGTTGCTGCA 59.886 61.111 14.26 0.00 0.00 4.41
1749 1831 3.884774 ACCAACTTGGGCGCTGGA 61.885 61.111 17.06 0.00 43.37 3.86
2019 2101 6.299805 TCCTTATACTTCATCAACACAGCT 57.700 37.500 0.00 0.00 0.00 4.24
2085 2167 3.204827 CAAGCCTCGGCCAATCGG 61.205 66.667 2.24 0.00 43.17 4.18
2313 2395 0.469494 TGCTCTGTTCAGCAACTCCA 59.531 50.000 0.00 0.00 46.65 3.86
2343 2425 2.901839 AGCATGGCCACAATCTTTCTTT 59.098 40.909 8.16 0.00 0.00 2.52
2421 2503 1.901833 GCATCAATCCCAACCTGGTTT 59.098 47.619 9.90 0.00 35.17 3.27
2448 2530 2.996631 ACTTCATGAAGGTCCAGATGC 58.003 47.619 33.11 0.00 42.53 3.91
2496 2578 1.284982 CGCTGGTCACTGTTTCCTCG 61.285 60.000 0.85 0.00 0.00 4.63
2544 2626 0.171903 CCTCCTGGAATTTTGCTGCG 59.828 55.000 0.00 0.00 34.57 5.18
2646 2728 3.065095 GCTGAGCAGACATGATTTCCTTC 59.935 47.826 0.00 0.00 0.00 3.46
2847 2929 4.836825 TGAATGTCTCTGAAGAATCCCAC 58.163 43.478 0.00 0.00 31.93 4.61
2907 2989 3.594134 CACTTTCTCCCACATCTCTGTC 58.406 50.000 0.00 0.00 31.62 3.51
2976 3058 4.336889 TCGTTTCTTCAACACCTCATCT 57.663 40.909 0.00 0.00 34.68 2.90
2995 3077 1.063912 TGCACTGTGTTGCTTCTTTCG 59.936 47.619 9.86 0.00 43.41 3.46
3309 3394 3.275999 CACAGACTCATCATCAATGCCA 58.724 45.455 0.00 0.00 35.17 4.92
3324 3409 4.816925 AGAACTTAGCTTTCAACCACAGAC 59.183 41.667 0.00 0.00 0.00 3.51
3500 3587 4.910195 AGATGTTTGAAGCATGTGGAGTA 58.090 39.130 0.00 0.00 0.00 2.59
3504 3591 4.508461 TCAAGATGTTTGAAGCATGTGG 57.492 40.909 0.00 0.00 0.00 4.17
3543 3630 7.714813 CCGGCCCAAAAGATTATCATAAAAATT 59.285 33.333 0.00 0.00 0.00 1.82
3558 3645 0.033366 CCTTGAAACCGGCCCAAAAG 59.967 55.000 0.00 0.00 0.00 2.27
3591 3678 9.503427 CTTGAAAGTGGTTAACTACTTCAAAAG 57.497 33.333 30.23 26.40 45.13 2.27
3614 3701 1.007336 ACGTTTAGCGAGCGGTCTTG 61.007 55.000 13.48 0.00 44.77 3.02
3622 3709 1.698165 TGCAGAGAACGTTTAGCGAG 58.302 50.000 0.46 0.00 44.77 5.03
3713 3925 6.746364 AGCTAAGAAACTACACGTAAATCTCG 59.254 38.462 0.00 0.00 0.00 4.04
3762 4080 4.033894 GCGCCTGGCACATACTAG 57.966 61.111 20.29 0.12 42.87 2.57
3780 4098 1.597854 CAGAGTGGCCAGTTTGCGA 60.598 57.895 17.47 0.00 0.00 5.10
3815 4133 3.412386 GGCTGTGACAACTAACAATCCT 58.588 45.455 0.00 0.00 0.00 3.24
3906 4224 7.467623 AGTCGATAAATCTGCAAAATCTGTTC 58.532 34.615 0.00 0.00 0.00 3.18
3907 4225 7.383102 AGTCGATAAATCTGCAAAATCTGTT 57.617 32.000 0.00 0.00 0.00 3.16
3909 4227 6.037500 TGGAGTCGATAAATCTGCAAAATCTG 59.962 38.462 0.00 0.00 0.00 2.90
3910 4228 6.115446 TGGAGTCGATAAATCTGCAAAATCT 58.885 36.000 0.00 0.00 0.00 2.40
3911 4229 6.258727 TCTGGAGTCGATAAATCTGCAAAATC 59.741 38.462 0.00 0.00 0.00 2.17
3996 4320 1.131126 CATCTGCCGTGACAATTCCAC 59.869 52.381 0.00 0.00 0.00 4.02
3997 4321 1.271325 ACATCTGCCGTGACAATTCCA 60.271 47.619 0.00 0.00 0.00 3.53
3998 4322 1.398390 GACATCTGCCGTGACAATTCC 59.602 52.381 0.00 0.00 0.00 3.01
3999 4323 1.398390 GGACATCTGCCGTGACAATTC 59.602 52.381 0.00 0.00 0.00 2.17
4000 4324 1.003580 AGGACATCTGCCGTGACAATT 59.996 47.619 0.00 0.00 0.00 2.32
4001 4325 0.615331 AGGACATCTGCCGTGACAAT 59.385 50.000 0.00 0.00 0.00 2.71
4002 4326 0.037326 GAGGACATCTGCCGTGACAA 60.037 55.000 0.00 0.00 0.00 3.18
4003 4327 1.184970 TGAGGACATCTGCCGTGACA 61.185 55.000 0.00 0.00 0.00 3.58
4004 4328 0.037326 TTGAGGACATCTGCCGTGAC 60.037 55.000 0.00 0.00 0.00 3.67
4005 4329 0.247460 CTTGAGGACATCTGCCGTGA 59.753 55.000 0.00 0.00 0.00 4.35
4006 4330 1.364626 GCTTGAGGACATCTGCCGTG 61.365 60.000 0.00 0.00 0.00 4.94
4007 4331 1.078848 GCTTGAGGACATCTGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
4008 4332 0.461548 TAGCTTGAGGACATCTGCCG 59.538 55.000 0.00 0.00 0.00 5.69
4009 4333 1.202627 CCTAGCTTGAGGACATCTGCC 60.203 57.143 0.00 0.00 39.15 4.85
4010 4334 1.759445 TCCTAGCTTGAGGACATCTGC 59.241 52.381 0.72 0.00 40.89 4.26
4017 4341 3.280295 CGACTAAGTCCTAGCTTGAGGA 58.720 50.000 0.72 0.72 43.67 3.71
4018 4342 3.018149 ACGACTAAGTCCTAGCTTGAGG 58.982 50.000 0.00 0.00 38.03 3.86
4019 4343 3.181495 CCACGACTAAGTCCTAGCTTGAG 60.181 52.174 0.00 0.00 0.00 3.02
4020 4344 2.753452 CCACGACTAAGTCCTAGCTTGA 59.247 50.000 0.00 0.00 0.00 3.02
4021 4345 2.753452 TCCACGACTAAGTCCTAGCTTG 59.247 50.000 0.00 0.00 0.00 4.01
4022 4346 3.018149 CTCCACGACTAAGTCCTAGCTT 58.982 50.000 0.00 0.00 0.00 3.74
4023 4347 2.645802 CTCCACGACTAAGTCCTAGCT 58.354 52.381 0.00 0.00 0.00 3.32
4024 4348 1.065851 GCTCCACGACTAAGTCCTAGC 59.934 57.143 0.00 0.00 0.00 3.42
4025 4349 1.677052 GGCTCCACGACTAAGTCCTAG 59.323 57.143 0.00 0.00 0.00 3.02
4026 4350 1.005097 TGGCTCCACGACTAAGTCCTA 59.995 52.381 0.00 0.00 0.00 2.94
4027 4351 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
4028 4352 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
4029 4353 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
4030 4354 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
4031 4355 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
4032 4356 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
4033 4357 2.782222 GGCGATGGCTCCACGACTA 61.782 63.158 12.62 0.00 39.81 2.59
4034 4358 4.148825 GGCGATGGCTCCACGACT 62.149 66.667 12.62 0.00 39.81 4.18
4038 4362 4.221422 TAGCGGCGATGGCTCCAC 62.221 66.667 12.98 0.00 41.80 4.02
4039 4363 3.916544 CTAGCGGCGATGGCTCCA 61.917 66.667 12.98 0.00 41.80 3.86
4040 4364 2.644555 TTTCTAGCGGCGATGGCTCC 62.645 60.000 12.98 0.00 41.80 4.70
4041 4365 1.218230 CTTTCTAGCGGCGATGGCTC 61.218 60.000 12.98 0.00 41.80 4.70
4042 4366 1.227380 CTTTCTAGCGGCGATGGCT 60.227 57.895 12.98 0.00 44.35 4.75
4043 4367 2.886782 GCTTTCTAGCGGCGATGGC 61.887 63.158 12.98 1.88 37.71 4.40
4044 4368 3.324035 GCTTTCTAGCGGCGATGG 58.676 61.111 12.98 6.63 37.71 3.51
4053 4377 5.106673 CGTTTAACCCCTTCAAGCTTTCTAG 60.107 44.000 0.00 0.00 0.00 2.43
4054 4378 4.758165 CGTTTAACCCCTTCAAGCTTTCTA 59.242 41.667 0.00 0.00 0.00 2.10
4055 4379 3.568430 CGTTTAACCCCTTCAAGCTTTCT 59.432 43.478 0.00 0.00 0.00 2.52
4056 4380 3.305131 CCGTTTAACCCCTTCAAGCTTTC 60.305 47.826 0.00 0.00 0.00 2.62
4057 4381 2.626266 CCGTTTAACCCCTTCAAGCTTT 59.374 45.455 0.00 0.00 0.00 3.51
4058 4382 2.235891 CCGTTTAACCCCTTCAAGCTT 58.764 47.619 0.00 0.00 0.00 3.74
4059 4383 1.546998 CCCGTTTAACCCCTTCAAGCT 60.547 52.381 0.00 0.00 0.00 3.74
4060 4384 0.885879 CCCGTTTAACCCCTTCAAGC 59.114 55.000 0.00 0.00 0.00 4.01
4061 4385 2.156917 GTCCCGTTTAACCCCTTCAAG 58.843 52.381 0.00 0.00 0.00 3.02
4062 4386 1.493871 TGTCCCGTTTAACCCCTTCAA 59.506 47.619 0.00 0.00 0.00 2.69
4063 4387 1.138568 TGTCCCGTTTAACCCCTTCA 58.861 50.000 0.00 0.00 0.00 3.02
4064 4388 2.156917 CTTGTCCCGTTTAACCCCTTC 58.843 52.381 0.00 0.00 0.00 3.46
4065 4389 1.202964 CCTTGTCCCGTTTAACCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
4066 4390 0.402887 CCTTGTCCCGTTTAACCCCT 59.597 55.000 0.00 0.00 0.00 4.79
4067 4391 0.401356 TCCTTGTCCCGTTTAACCCC 59.599 55.000 0.00 0.00 0.00 4.95
4068 4392 1.881973 GTTCCTTGTCCCGTTTAACCC 59.118 52.381 0.00 0.00 0.00 4.11
4069 4393 2.291465 GTGTTCCTTGTCCCGTTTAACC 59.709 50.000 0.00 0.00 0.00 2.85
4070 4394 2.032636 CGTGTTCCTTGTCCCGTTTAAC 60.033 50.000 0.00 0.00 0.00 2.01
4071 4395 2.158986 TCGTGTTCCTTGTCCCGTTTAA 60.159 45.455 0.00 0.00 0.00 1.52
4072 4396 1.411977 TCGTGTTCCTTGTCCCGTTTA 59.588 47.619 0.00 0.00 0.00 2.01
4073 4397 0.178533 TCGTGTTCCTTGTCCCGTTT 59.821 50.000 0.00 0.00 0.00 3.60
4074 4398 0.249741 CTCGTGTTCCTTGTCCCGTT 60.250 55.000 0.00 0.00 0.00 4.44
4075 4399 1.366366 CTCGTGTTCCTTGTCCCGT 59.634 57.895 0.00 0.00 0.00 5.28
4076 4400 1.374252 CCTCGTGTTCCTTGTCCCG 60.374 63.158 0.00 0.00 0.00 5.14
4077 4401 1.003718 CCCTCGTGTTCCTTGTCCC 60.004 63.158 0.00 0.00 0.00 4.46
4078 4402 0.108019 AACCCTCGTGTTCCTTGTCC 59.892 55.000 0.00 0.00 0.00 4.02
4079 4403 1.963172 AAACCCTCGTGTTCCTTGTC 58.037 50.000 0.00 0.00 0.00 3.18
4080 4404 3.782656 ATAAACCCTCGTGTTCCTTGT 57.217 42.857 0.00 0.00 0.00 3.16
4081 4405 4.630069 CAGTATAAACCCTCGTGTTCCTTG 59.370 45.833 0.00 0.00 0.00 3.61
4082 4406 4.323257 CCAGTATAAACCCTCGTGTTCCTT 60.323 45.833 0.00 0.00 0.00 3.36
4083 4407 3.197116 CCAGTATAAACCCTCGTGTTCCT 59.803 47.826 0.00 0.00 0.00 3.36
4084 4408 3.055602 ACCAGTATAAACCCTCGTGTTCC 60.056 47.826 0.00 0.00 0.00 3.62
4085 4409 4.198028 ACCAGTATAAACCCTCGTGTTC 57.802 45.455 0.00 0.00 0.00 3.18
4086 4410 4.572909 GAACCAGTATAAACCCTCGTGTT 58.427 43.478 0.00 0.00 0.00 3.32
4087 4411 3.367703 CGAACCAGTATAAACCCTCGTGT 60.368 47.826 0.00 0.00 0.00 4.49
4088 4412 3.184541 CGAACCAGTATAAACCCTCGTG 58.815 50.000 0.00 0.00 0.00 4.35
4089 4413 2.167075 CCGAACCAGTATAAACCCTCGT 59.833 50.000 0.00 0.00 0.00 4.18
4090 4414 2.817901 CCGAACCAGTATAAACCCTCG 58.182 52.381 0.00 0.00 0.00 4.63
4091 4415 2.558378 GCCGAACCAGTATAAACCCTC 58.442 52.381 0.00 0.00 0.00 4.30
4092 4416 1.211212 GGCCGAACCAGTATAAACCCT 59.789 52.381 0.00 0.00 38.86 4.34
4093 4417 1.671979 GGCCGAACCAGTATAAACCC 58.328 55.000 0.00 0.00 38.86 4.11
4094 4418 1.671979 GGGCCGAACCAGTATAAACC 58.328 55.000 0.00 0.00 42.05 3.27
4095 4419 1.211212 AGGGGCCGAACCAGTATAAAC 59.789 52.381 0.00 0.00 42.05 2.01
4096 4420 1.587066 AGGGGCCGAACCAGTATAAA 58.413 50.000 0.00 0.00 42.05 1.40
4097 4421 1.587066 AAGGGGCCGAACCAGTATAA 58.413 50.000 0.00 0.00 42.05 0.98
4098 4422 2.041701 GTAAGGGGCCGAACCAGTATA 58.958 52.381 0.00 0.00 42.05 1.47
4099 4423 0.835276 GTAAGGGGCCGAACCAGTAT 59.165 55.000 0.00 0.00 42.05 2.12
4100 4424 1.606885 CGTAAGGGGCCGAACCAGTA 61.607 60.000 0.00 0.00 42.05 2.74
4101 4425 2.951101 CGTAAGGGGCCGAACCAGT 61.951 63.158 0.00 0.00 42.05 4.00
4102 4426 2.125269 CGTAAGGGGCCGAACCAG 60.125 66.667 0.00 0.00 42.05 4.00
4114 4438 3.671716 AGGCTTTTACCTTCACCGTAAG 58.328 45.455 0.00 0.00 36.28 2.34
4115 4439 3.775261 AGGCTTTTACCTTCACCGTAA 57.225 42.857 0.00 0.00 36.28 3.18
4116 4440 3.367292 CGTAGGCTTTTACCTTCACCGTA 60.367 47.826 0.00 0.00 41.50 4.02
4117 4441 2.611224 CGTAGGCTTTTACCTTCACCGT 60.611 50.000 0.00 0.00 41.50 4.83
4118 4442 1.997606 CGTAGGCTTTTACCTTCACCG 59.002 52.381 0.00 0.00 41.50 4.94
4119 4443 2.998670 GACGTAGGCTTTTACCTTCACC 59.001 50.000 0.00 0.00 41.50 4.02
4120 4444 2.998670 GGACGTAGGCTTTTACCTTCAC 59.001 50.000 0.00 0.00 41.50 3.18
4121 4445 2.633967 TGGACGTAGGCTTTTACCTTCA 59.366 45.455 0.00 0.00 41.50 3.02
4122 4446 3.259902 CTGGACGTAGGCTTTTACCTTC 58.740 50.000 0.00 0.00 41.50 3.46
4123 4447 2.636403 ACTGGACGTAGGCTTTTACCTT 59.364 45.455 0.00 0.00 41.50 3.50
4124 4448 2.254508 ACTGGACGTAGGCTTTTACCT 58.745 47.619 0.00 0.00 44.31 3.08
4125 4449 2.740447 CAACTGGACGTAGGCTTTTACC 59.260 50.000 0.00 0.00 0.00 2.85
4126 4450 3.656559 TCAACTGGACGTAGGCTTTTAC 58.343 45.455 0.00 0.00 0.00 2.01
4127 4451 3.306502 CCTCAACTGGACGTAGGCTTTTA 60.307 47.826 0.00 0.00 0.00 1.52
4128 4452 2.550208 CCTCAACTGGACGTAGGCTTTT 60.550 50.000 0.00 0.00 0.00 2.27
4129 4453 1.002087 CCTCAACTGGACGTAGGCTTT 59.998 52.381 0.00 0.00 0.00 3.51
4130 4454 0.608640 CCTCAACTGGACGTAGGCTT 59.391 55.000 0.00 0.00 0.00 4.35
4131 4455 0.542232 ACCTCAACTGGACGTAGGCT 60.542 55.000 0.00 0.00 0.00 4.58
4132 4456 0.389948 CACCTCAACTGGACGTAGGC 60.390 60.000 0.00 0.00 0.00 3.93
4133 4457 0.246635 CCACCTCAACTGGACGTAGG 59.753 60.000 0.00 0.00 0.00 3.18
4134 4458 0.966920 ACCACCTCAACTGGACGTAG 59.033 55.000 0.00 0.00 32.55 3.51
4135 4459 2.291209 TACCACCTCAACTGGACGTA 57.709 50.000 0.00 0.00 32.55 3.57
4136 4460 1.640917 ATACCACCTCAACTGGACGT 58.359 50.000 0.00 0.00 32.55 4.34
4137 4461 2.028476 TCAATACCACCTCAACTGGACG 60.028 50.000 0.00 0.00 32.55 4.79
4138 4462 3.695830 TCAATACCACCTCAACTGGAC 57.304 47.619 0.00 0.00 32.55 4.02
4139 4463 4.927267 AATCAATACCACCTCAACTGGA 57.073 40.909 0.00 0.00 32.55 3.86
4140 4464 5.126067 CCTAATCAATACCACCTCAACTGG 58.874 45.833 0.00 0.00 34.62 4.00
4141 4465 5.745227 ACCTAATCAATACCACCTCAACTG 58.255 41.667 0.00 0.00 0.00 3.16
4142 4466 6.388619 AACCTAATCAATACCACCTCAACT 57.611 37.500 0.00 0.00 0.00 3.16
4143 4467 6.183360 CGAAACCTAATCAATACCACCTCAAC 60.183 42.308 0.00 0.00 0.00 3.18
4144 4468 5.878116 CGAAACCTAATCAATACCACCTCAA 59.122 40.000 0.00 0.00 0.00 3.02
4145 4469 5.188163 TCGAAACCTAATCAATACCACCTCA 59.812 40.000 0.00 0.00 0.00 3.86
4146 4470 5.667466 TCGAAACCTAATCAATACCACCTC 58.333 41.667 0.00 0.00 0.00 3.85
4147 4471 5.687166 TCGAAACCTAATCAATACCACCT 57.313 39.130 0.00 0.00 0.00 4.00
4148 4472 6.018180 GTCATCGAAACCTAATCAATACCACC 60.018 42.308 0.00 0.00 0.00 4.61
4149 4473 6.018180 GGTCATCGAAACCTAATCAATACCAC 60.018 42.308 11.96 0.00 33.78 4.16
4150 4474 6.053005 GGTCATCGAAACCTAATCAATACCA 58.947 40.000 11.96 0.00 33.78 3.25
4151 4475 6.053005 TGGTCATCGAAACCTAATCAATACC 58.947 40.000 18.11 0.00 37.69 2.73
4152 4476 6.202954 CCTGGTCATCGAAACCTAATCAATAC 59.797 42.308 18.11 0.00 37.69 1.89
4153 4477 6.288294 CCTGGTCATCGAAACCTAATCAATA 58.712 40.000 18.11 0.00 37.69 1.90
4154 4478 5.126067 CCTGGTCATCGAAACCTAATCAAT 58.874 41.667 18.11 0.00 37.69 2.57
4155 4479 4.513442 CCTGGTCATCGAAACCTAATCAA 58.487 43.478 18.11 0.36 37.69 2.57
4156 4480 3.118408 CCCTGGTCATCGAAACCTAATCA 60.118 47.826 18.11 0.95 37.69 2.57
4157 4481 3.134081 TCCCTGGTCATCGAAACCTAATC 59.866 47.826 18.11 0.00 37.69 1.75
4158 4482 3.112263 TCCCTGGTCATCGAAACCTAAT 58.888 45.455 18.11 0.00 37.69 1.73
4159 4483 2.500098 CTCCCTGGTCATCGAAACCTAA 59.500 50.000 18.11 2.15 37.69 2.69
4160 4484 2.108168 CTCCCTGGTCATCGAAACCTA 58.892 52.381 18.11 6.97 37.69 3.08
4161 4485 0.905357 CTCCCTGGTCATCGAAACCT 59.095 55.000 18.11 0.00 37.69 3.50
4162 4486 0.744771 GCTCCCTGGTCATCGAAACC 60.745 60.000 12.25 12.25 37.31 3.27
4163 4487 0.250513 AGCTCCCTGGTCATCGAAAC 59.749 55.000 0.00 0.00 0.00 2.78
4164 4488 0.984230 AAGCTCCCTGGTCATCGAAA 59.016 50.000 0.00 0.00 0.00 3.46
4165 4489 1.860641 TAAGCTCCCTGGTCATCGAA 58.139 50.000 0.00 0.00 0.00 3.71
4166 4490 1.480954 GTTAAGCTCCCTGGTCATCGA 59.519 52.381 0.00 0.00 0.00 3.59
4167 4491 1.482593 AGTTAAGCTCCCTGGTCATCG 59.517 52.381 0.00 0.00 0.00 3.84
4168 4492 2.911484 CAGTTAAGCTCCCTGGTCATC 58.089 52.381 0.00 0.00 0.00 2.92
4169 4493 1.065126 GCAGTTAAGCTCCCTGGTCAT 60.065 52.381 8.72 0.00 0.00 3.06
4170 4494 0.324943 GCAGTTAAGCTCCCTGGTCA 59.675 55.000 8.72 0.00 0.00 4.02
4171 4495 0.615850 AGCAGTTAAGCTCCCTGGTC 59.384 55.000 6.22 0.00 42.18 4.02
4172 4496 1.952621 TAGCAGTTAAGCTCCCTGGT 58.047 50.000 14.01 14.01 45.26 4.00
4173 4497 2.843701 CATAGCAGTTAAGCTCCCTGG 58.156 52.381 8.72 0.00 45.26 4.45
4174 4498 2.216898 GCATAGCAGTTAAGCTCCCTG 58.783 52.381 0.00 0.00 45.26 4.45
4175 4499 1.141858 GGCATAGCAGTTAAGCTCCCT 59.858 52.381 0.00 0.00 45.26 4.20
4176 4500 1.141858 AGGCATAGCAGTTAAGCTCCC 59.858 52.381 0.00 0.00 45.26 4.30
4177 4501 2.216898 CAGGCATAGCAGTTAAGCTCC 58.783 52.381 0.00 0.00 45.26 4.70
4178 4502 2.216898 CCAGGCATAGCAGTTAAGCTC 58.783 52.381 0.00 0.00 45.26 4.09
4180 4504 0.665298 GCCAGGCATAGCAGTTAAGC 59.335 55.000 6.55 0.00 0.00 3.09
4181 4505 2.338577 AGCCAGGCATAGCAGTTAAG 57.661 50.000 15.80 0.00 0.00 1.85
4182 4506 2.806945 AAGCCAGGCATAGCAGTTAA 57.193 45.000 15.80 0.00 0.00 2.01
4183 4507 2.643551 GAAAGCCAGGCATAGCAGTTA 58.356 47.619 15.80 0.00 0.00 2.24
4184 4508 1.467920 GAAAGCCAGGCATAGCAGTT 58.532 50.000 15.80 0.00 0.00 3.16
4185 4509 0.745845 CGAAAGCCAGGCATAGCAGT 60.746 55.000 15.80 0.00 0.00 4.40
4186 4510 0.462581 TCGAAAGCCAGGCATAGCAG 60.463 55.000 15.80 0.00 0.00 4.24
4187 4511 0.744414 GTCGAAAGCCAGGCATAGCA 60.744 55.000 15.80 0.00 0.00 3.49
4188 4512 1.766143 CGTCGAAAGCCAGGCATAGC 61.766 60.000 15.80 0.00 0.00 2.97
4189 4513 0.179111 TCGTCGAAAGCCAGGCATAG 60.179 55.000 15.80 2.39 0.00 2.23
4190 4514 0.179111 CTCGTCGAAAGCCAGGCATA 60.179 55.000 15.80 0.00 0.00 3.14
4191 4515 1.448540 CTCGTCGAAAGCCAGGCAT 60.449 57.895 15.80 0.00 0.00 4.40
4192 4516 1.888436 ATCTCGTCGAAAGCCAGGCA 61.888 55.000 15.80 0.00 0.00 4.75
4193 4517 1.148759 GATCTCGTCGAAAGCCAGGC 61.149 60.000 1.84 1.84 0.00 4.85
4194 4518 0.457851 AGATCTCGTCGAAAGCCAGG 59.542 55.000 0.00 0.00 0.00 4.45
4195 4519 2.159310 AGAAGATCTCGTCGAAAGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
4196 4520 1.819288 AGAAGATCTCGTCGAAAGCCA 59.181 47.619 0.00 0.00 0.00 4.75
4197 4521 2.570442 AGAAGATCTCGTCGAAAGCC 57.430 50.000 0.00 0.00 0.00 4.35
4198 4522 3.792421 GGTAAGAAGATCTCGTCGAAAGC 59.208 47.826 0.00 0.00 0.00 3.51
4199 4523 4.352887 GGGTAAGAAGATCTCGTCGAAAG 58.647 47.826 0.00 0.00 0.00 2.62
4200 4524 3.129988 GGGGTAAGAAGATCTCGTCGAAA 59.870 47.826 0.00 0.00 0.00 3.46
4201 4525 2.686915 GGGGTAAGAAGATCTCGTCGAA 59.313 50.000 0.00 0.00 0.00 3.71
4202 4526 2.092538 AGGGGTAAGAAGATCTCGTCGA 60.093 50.000 0.00 0.00 0.00 4.20
4203 4527 2.299521 AGGGGTAAGAAGATCTCGTCG 58.700 52.381 0.00 0.00 0.00 5.12
4204 4528 5.451659 GGTTTAGGGGTAAGAAGATCTCGTC 60.452 48.000 0.00 0.00 0.00 4.20
4205 4529 4.405036 GGTTTAGGGGTAAGAAGATCTCGT 59.595 45.833 0.00 0.00 0.00 4.18
4206 4530 4.499357 CGGTTTAGGGGTAAGAAGATCTCG 60.499 50.000 0.00 0.00 0.00 4.04
4207 4531 4.740034 GCGGTTTAGGGGTAAGAAGATCTC 60.740 50.000 0.00 0.00 0.00 2.75
4208 4532 3.134262 GCGGTTTAGGGGTAAGAAGATCT 59.866 47.826 0.00 0.00 0.00 2.75
4209 4533 3.134262 AGCGGTTTAGGGGTAAGAAGATC 59.866 47.826 0.00 0.00 0.00 2.75
4210 4534 3.113043 AGCGGTTTAGGGGTAAGAAGAT 58.887 45.455 0.00 0.00 0.00 2.40
4211 4535 2.235402 CAGCGGTTTAGGGGTAAGAAGA 59.765 50.000 0.00 0.00 0.00 2.87
4212 4536 2.629051 CAGCGGTTTAGGGGTAAGAAG 58.371 52.381 0.00 0.00 0.00 2.85
4213 4537 1.339342 GCAGCGGTTTAGGGGTAAGAA 60.339 52.381 0.00 0.00 0.00 2.52
4214 4538 0.251073 GCAGCGGTTTAGGGGTAAGA 59.749 55.000 0.00 0.00 0.00 2.10
4215 4539 0.746923 GGCAGCGGTTTAGGGGTAAG 60.747 60.000 0.00 0.00 0.00 2.34
4216 4540 1.300634 GGCAGCGGTTTAGGGGTAA 59.699 57.895 0.00 0.00 0.00 2.85
4217 4541 2.992164 GGCAGCGGTTTAGGGGTA 59.008 61.111 0.00 0.00 0.00 3.69
4218 4542 4.404098 CGGCAGCGGTTTAGGGGT 62.404 66.667 0.00 0.00 0.00 4.95
4221 4545 4.404098 ACCCGGCAGCGGTTTAGG 62.404 66.667 0.00 0.00 0.00 2.69
4222 4546 2.818274 GACCCGGCAGCGGTTTAG 60.818 66.667 0.00 0.00 32.27 1.85
4223 4547 4.745751 CGACCCGGCAGCGGTTTA 62.746 66.667 0.00 0.00 32.27 2.01
4236 4560 5.323581 ACCTCTCTATATAAAGGGACGACC 58.676 45.833 0.00 0.00 40.67 4.79
4237 4561 6.489361 TCAACCTCTCTATATAAAGGGACGAC 59.511 42.308 9.26 0.00 32.97 4.34
4238 4562 6.489361 GTCAACCTCTCTATATAAAGGGACGA 59.511 42.308 9.26 2.32 32.97 4.20
4239 4563 6.568081 CGTCAACCTCTCTATATAAAGGGACG 60.568 46.154 15.10 15.10 37.29 4.79
4240 4564 6.679843 CGTCAACCTCTCTATATAAAGGGAC 58.320 44.000 9.26 7.24 32.97 4.46
4241 4565 5.243283 GCGTCAACCTCTCTATATAAAGGGA 59.757 44.000 9.26 0.00 32.97 4.20
4242 4566 5.471257 GCGTCAACCTCTCTATATAAAGGG 58.529 45.833 9.26 0.00 32.97 3.95
4243 4567 5.471257 GGCGTCAACCTCTCTATATAAAGG 58.529 45.833 4.63 4.63 34.94 3.11
4244 4568 5.010719 TGGGCGTCAACCTCTCTATATAAAG 59.989 44.000 0.00 0.00 0.00 1.85
4245 4569 4.897076 TGGGCGTCAACCTCTCTATATAAA 59.103 41.667 0.00 0.00 0.00 1.40
4246 4570 4.476297 TGGGCGTCAACCTCTCTATATAA 58.524 43.478 0.00 0.00 0.00 0.98
4247 4571 4.079970 CTGGGCGTCAACCTCTCTATATA 58.920 47.826 0.00 0.00 0.00 0.86
4248 4572 2.894126 CTGGGCGTCAACCTCTCTATAT 59.106 50.000 0.00 0.00 0.00 0.86
4249 4573 2.307768 CTGGGCGTCAACCTCTCTATA 58.692 52.381 0.00 0.00 0.00 1.31
4250 4574 1.115467 CTGGGCGTCAACCTCTCTAT 58.885 55.000 0.00 0.00 0.00 1.98
4251 4575 1.605058 GCTGGGCGTCAACCTCTCTA 61.605 60.000 0.00 0.00 0.00 2.43
4252 4576 2.948720 GCTGGGCGTCAACCTCTCT 61.949 63.158 0.00 0.00 0.00 3.10
4253 4577 2.435059 GCTGGGCGTCAACCTCTC 60.435 66.667 0.00 0.00 0.00 3.20
4254 4578 3.241530 TGCTGGGCGTCAACCTCT 61.242 61.111 0.00 0.00 0.00 3.69
4255 4579 2.743928 CTGCTGGGCGTCAACCTC 60.744 66.667 0.00 0.00 0.00 3.85
4258 4582 3.426568 GAGCTGCTGGGCGTCAAC 61.427 66.667 7.01 0.00 37.29 3.18
4259 4583 3.596066 GAGAGCTGCTGGGCGTCAA 62.596 63.158 7.01 0.00 37.29 3.18
4260 4584 4.074526 GAGAGCTGCTGGGCGTCA 62.075 66.667 7.01 0.00 37.29 4.35
4261 4585 4.074526 TGAGAGCTGCTGGGCGTC 62.075 66.667 7.01 0.00 37.29 5.19
4262 4586 4.079850 CTGAGAGCTGCTGGGCGT 62.080 66.667 7.01 0.00 37.29 5.68
4263 4587 3.719883 CTCTGAGAGCTGCTGGGCG 62.720 68.421 7.01 0.00 37.29 6.13
4264 4588 2.187424 CTCTGAGAGCTGCTGGGC 59.813 66.667 7.01 0.00 0.00 5.36
4265 4589 1.516892 GACTCTGAGAGCTGCTGGG 59.483 63.158 7.01 0.00 32.04 4.45
4266 4590 1.516892 GGACTCTGAGAGCTGCTGG 59.483 63.158 7.01 0.00 32.04 4.85
4267 4591 1.516892 GGGACTCTGAGAGCTGCTG 59.483 63.158 7.01 0.00 32.04 4.41
4268 4592 2.051518 CGGGACTCTGAGAGCTGCT 61.052 63.158 12.44 0.00 32.04 4.24
4269 4593 2.493973 CGGGACTCTGAGAGCTGC 59.506 66.667 12.44 2.35 32.04 5.25
4270 4594 3.074999 GCCGGGACTCTGAGAGCTG 62.075 68.421 12.44 0.00 32.04 4.24
4271 4595 2.757917 GCCGGGACTCTGAGAGCT 60.758 66.667 12.44 0.00 32.04 4.09
4272 4596 3.844090 GGCCGGGACTCTGAGAGC 61.844 72.222 12.44 2.33 32.04 4.09
4273 4597 3.522731 CGGCCGGGACTCTGAGAG 61.523 72.222 20.10 8.15 35.52 3.20
4280 4604 4.853142 TATGAGCCGGCCGGGACT 62.853 66.667 43.31 32.89 38.47 3.85
4281 4605 3.809374 CTTATGAGCCGGCCGGGAC 62.809 68.421 43.31 28.68 38.47 4.46
4282 4606 3.546543 CTTATGAGCCGGCCGGGA 61.547 66.667 43.31 10.93 38.47 5.14
4283 4607 3.521529 CTCTTATGAGCCGGCCGGG 62.522 68.421 43.31 25.74 39.58 5.73
4284 4608 2.029666 CTCTTATGAGCCGGCCGG 59.970 66.667 40.26 40.26 33.12 6.13
4285 4609 1.592669 CACTCTTATGAGCCGGCCG 60.593 63.158 26.15 21.04 43.85 6.13
4286 4610 0.530870 GACACTCTTATGAGCCGGCC 60.531 60.000 26.15 15.80 43.85 6.13
4287 4611 0.530870 GGACACTCTTATGAGCCGGC 60.531 60.000 21.89 21.89 43.85 6.13
4288 4612 0.249073 CGGACACTCTTATGAGCCGG 60.249 60.000 12.49 0.00 43.85 6.13
4289 4613 0.249073 CCGGACACTCTTATGAGCCG 60.249 60.000 0.00 13.06 43.85 5.52
4290 4614 0.530870 GCCGGACACTCTTATGAGCC 60.531 60.000 5.05 0.00 43.85 4.70
4291 4615 0.461961 AGCCGGACACTCTTATGAGC 59.538 55.000 5.05 0.00 43.85 4.26
4292 4616 1.268794 CGAGCCGGACACTCTTATGAG 60.269 57.143 5.05 4.14 45.43 2.90
4293 4617 0.738975 CGAGCCGGACACTCTTATGA 59.261 55.000 5.05 0.00 31.71 2.15
4294 4618 3.258225 CGAGCCGGACACTCTTATG 57.742 57.895 5.05 0.00 31.71 1.90
4307 4631 1.753368 AATAGCTGAGAGCCCGAGCC 61.753 60.000 0.00 0.00 43.77 4.70
4308 4632 0.319469 GAATAGCTGAGAGCCCGAGC 60.319 60.000 0.00 0.00 43.77 5.03
4309 4633 1.327303 AGAATAGCTGAGAGCCCGAG 58.673 55.000 0.00 0.00 43.77 4.63
4310 4634 1.410517 CAAGAATAGCTGAGAGCCCGA 59.589 52.381 0.00 0.00 43.77 5.14
4311 4635 1.137872 ACAAGAATAGCTGAGAGCCCG 59.862 52.381 0.00 0.00 43.77 6.13
4312 4636 2.433970 AGACAAGAATAGCTGAGAGCCC 59.566 50.000 0.00 0.00 43.77 5.19
4313 4637 3.817709 AGACAAGAATAGCTGAGAGCC 57.182 47.619 0.00 0.00 43.77 4.70
4314 4638 5.518487 GTGTAAGACAAGAATAGCTGAGAGC 59.482 44.000 0.00 0.00 42.84 4.09
4315 4639 6.862209 AGTGTAAGACAAGAATAGCTGAGAG 58.138 40.000 0.00 0.00 0.00 3.20
4316 4640 6.842437 AGTGTAAGACAAGAATAGCTGAGA 57.158 37.500 0.00 0.00 0.00 3.27
4317 4641 7.539436 TGTAGTGTAAGACAAGAATAGCTGAG 58.461 38.462 0.00 0.00 0.00 3.35
4318 4642 7.462571 TGTAGTGTAAGACAAGAATAGCTGA 57.537 36.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.