Multiple sequence alignment - TraesCS5D01G170000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G170000 chr5D 100.000 4050 0 0 1 4050 266747251 266751300 0.000000e+00 7480.0
1 TraesCS5D01G170000 chr5D 83.333 120 9 6 3353 3462 443898316 443898198 2.580000e-17 100.0
2 TraesCS5D01G170000 chr5B 90.996 1877 100 28 2201 4046 300377760 300379598 0.000000e+00 2466.0
3 TraesCS5D01G170000 chr5B 93.252 741 22 15 746 1479 300376455 300377174 0.000000e+00 1066.0
4 TraesCS5D01G170000 chr5B 95.447 571 16 3 1517 2078 300377172 300377741 0.000000e+00 902.0
5 TraesCS5D01G170000 chr5B 86.980 745 93 3 3 747 100826462 100827202 0.000000e+00 835.0
6 TraesCS5D01G170000 chr5B 79.156 758 135 21 5 748 567149881 567150629 1.680000e-138 503.0
7 TraesCS5D01G170000 chr5A 91.759 1808 75 37 746 2497 353863254 353861465 0.000000e+00 2446.0
8 TraesCS5D01G170000 chr5A 90.022 1353 79 24 2578 3904 353861467 353860145 0.000000e+00 1700.0
9 TraesCS5D01G170000 chr2B 93.691 745 47 0 3 747 755322893 755323637 0.000000e+00 1116.0
10 TraesCS5D01G170000 chr3B 85.561 748 102 5 3 747 700806709 700807453 0.000000e+00 778.0
11 TraesCS5D01G170000 chr3B 87.290 417 45 7 338 749 752810293 752809880 1.700000e-128 470.0
12 TraesCS5D01G170000 chr1A 85.503 745 99 8 3 742 58956565 58955825 0.000000e+00 769.0
13 TraesCS5D01G170000 chr1A 81.481 135 7 16 3349 3468 548793163 548793294 1.200000e-15 95.3
14 TraesCS5D01G170000 chr7A 85.047 749 106 5 3 748 182220641 182219896 0.000000e+00 758.0
15 TraesCS5D01G170000 chr7A 81.404 769 118 19 3 755 335994035 335993276 4.480000e-169 604.0
16 TraesCS5D01G170000 chr7A 91.200 125 7 4 2097 2220 292850142 292850263 2.500000e-37 167.0
17 TraesCS5D01G170000 chr1B 83.333 750 114 10 3 747 62646637 62647380 0.000000e+00 682.0
18 TraesCS5D01G170000 chr7B 81.060 755 122 17 7 749 339207291 339208036 2.100000e-162 582.0
19 TraesCS5D01G170000 chr7B 93.407 91 6 0 2494 2584 145374791 145374881 7.060000e-28 135.0
20 TraesCS5D01G170000 chr6B 99.048 105 1 0 2102 2206 633054118 633054014 5.340000e-44 189.0
21 TraesCS5D01G170000 chr6B 98.113 106 1 1 2100 2205 219879450 219879346 2.490000e-42 183.0
22 TraesCS5D01G170000 chr6B 95.455 88 4 0 2495 2582 13827610 13827523 1.520000e-29 141.0
23 TraesCS5D01G170000 chr2A 99.029 103 0 1 2100 2202 416627469 416627570 2.490000e-42 183.0
24 TraesCS5D01G170000 chr2A 90.722 97 9 0 2494 2590 617178805 617178901 3.290000e-26 130.0
25 TraesCS5D01G170000 chr6D 96.396 111 2 2 2100 2208 356602730 356602620 8.940000e-42 182.0
26 TraesCS5D01G170000 chr6D 95.402 87 4 0 2494 2580 380136979 380137065 5.460000e-29 139.0
27 TraesCS5D01G170000 chr4D 96.396 111 2 2 2093 2202 179707422 179707531 8.940000e-42 182.0
28 TraesCS5D01G170000 chr2D 95.575 113 4 1 2106 2217 609331814 609331926 3.220000e-41 180.0
29 TraesCS5D01G170000 chr2D 93.496 123 1 6 2094 2210 67559217 67559338 4.160000e-40 176.0
30 TraesCS5D01G170000 chr2D 83.562 73 11 1 3712 3784 616935627 616935556 2.610000e-07 67.6
31 TraesCS5D01G170000 chr6A 94.690 113 6 0 2106 2218 465607958 465607846 4.160000e-40 176.0
32 TraesCS5D01G170000 chr7D 95.402 87 4 0 2494 2580 474349061 474349147 5.460000e-29 139.0
33 TraesCS5D01G170000 chr7D 90.099 101 9 1 2495 2594 351587106 351587206 3.290000e-26 130.0
34 TraesCS5D01G170000 chr7D 83.636 110 11 4 3357 3462 351766190 351766296 3.330000e-16 97.1
35 TraesCS5D01G170000 chr1D 95.349 86 4 0 2494 2579 42391718 42391803 1.960000e-28 137.0
36 TraesCS5D01G170000 chr1D 91.667 96 6 2 2494 2588 58573715 58573621 9.130000e-27 132.0
37 TraesCS5D01G170000 chr1D 81.967 122 8 11 3351 3462 470555113 470555230 1.550000e-14 91.6
38 TraesCS5D01G170000 chr1D 84.932 73 11 0 3712 3784 482224772 482224700 1.560000e-09 75.0
39 TraesCS5D01G170000 chr4B 87.500 120 4 9 3353 3462 467918246 467918364 1.180000e-25 128.0
40 TraesCS5D01G170000 chr4A 85.950 121 5 10 3353 3462 83316829 83316710 7.110000e-23 119.0
41 TraesCS5D01G170000 chr3A 84.685 111 7 9 3360 3464 534194334 534194228 7.160000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G170000 chr5D 266747251 266751300 4049 False 7480 7480 100.000000 1 4050 1 chr5D.!!$F1 4049
1 TraesCS5D01G170000 chr5B 300376455 300379598 3143 False 1478 2466 93.231667 746 4046 3 chr5B.!!$F3 3300
2 TraesCS5D01G170000 chr5B 100826462 100827202 740 False 835 835 86.980000 3 747 1 chr5B.!!$F1 744
3 TraesCS5D01G170000 chr5B 567149881 567150629 748 False 503 503 79.156000 5 748 1 chr5B.!!$F2 743
4 TraesCS5D01G170000 chr5A 353860145 353863254 3109 True 2073 2446 90.890500 746 3904 2 chr5A.!!$R1 3158
5 TraesCS5D01G170000 chr2B 755322893 755323637 744 False 1116 1116 93.691000 3 747 1 chr2B.!!$F1 744
6 TraesCS5D01G170000 chr3B 700806709 700807453 744 False 778 778 85.561000 3 747 1 chr3B.!!$F1 744
7 TraesCS5D01G170000 chr1A 58955825 58956565 740 True 769 769 85.503000 3 742 1 chr1A.!!$R1 739
8 TraesCS5D01G170000 chr7A 182219896 182220641 745 True 758 758 85.047000 3 748 1 chr7A.!!$R1 745
9 TraesCS5D01G170000 chr7A 335993276 335994035 759 True 604 604 81.404000 3 755 1 chr7A.!!$R2 752
10 TraesCS5D01G170000 chr1B 62646637 62647380 743 False 682 682 83.333000 3 747 1 chr1B.!!$F1 744
11 TraesCS5D01G170000 chr7B 339207291 339208036 745 False 582 582 81.060000 7 749 1 chr7B.!!$F2 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 954 0.387565 GGTCGCTCCTCCTGATCTTC 59.612 60.0 0.0 0.0 0.00 2.87 F
1429 1462 0.104855 CTTCGCCTGCTGCCTGTATA 59.895 55.0 0.0 0.0 36.24 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2623 2806 0.543277 TCATCTGTGCAGGTGGGATC 59.457 55.000 11.97 0.0 39.94 3.36 R
3091 3277 1.061570 GCTCCACCGTACTACGACG 59.938 63.158 10.27 0.0 46.05 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.683802 AGTCAAAAGAAGATGGCTCTGG 58.316 45.455 0.00 0.00 0.00 3.86
182 183 3.219198 GGCAATGATGGCCGGGTC 61.219 66.667 2.18 0.00 45.93 4.46
422 424 3.125316 GCGTCATCTTCCTCAAAAACGAT 59.875 43.478 0.00 0.00 0.00 3.73
460 462 1.003355 TTCAGGGCCAGCTCTTTCG 60.003 57.895 6.18 0.00 0.00 3.46
614 621 2.159310 CCCTGCGAGTAGAGACAGAAAG 60.159 54.545 0.00 0.00 31.67 2.62
648 663 1.076192 ACGAGGCTACCCCGAGATT 60.076 57.895 0.00 0.00 39.21 2.40
759 783 3.554960 CGAGAGGGAAAACATGACACAGA 60.555 47.826 0.00 0.00 0.00 3.41
847 879 7.013369 CCTCATTATTTTTCTACCTAACTGGGC 59.987 40.741 0.00 0.00 41.11 5.36
918 951 2.725008 CGGTCGCTCCTCCTGATC 59.275 66.667 0.00 0.00 0.00 2.92
919 952 1.826054 CGGTCGCTCCTCCTGATCT 60.826 63.158 0.00 0.00 0.00 2.75
920 953 1.388065 CGGTCGCTCCTCCTGATCTT 61.388 60.000 0.00 0.00 0.00 2.40
921 954 0.387565 GGTCGCTCCTCCTGATCTTC 59.612 60.000 0.00 0.00 0.00 2.87
947 980 5.975410 AAGTTGAAGAGAAGAGAAACACG 57.025 39.130 0.00 0.00 0.00 4.49
948 981 3.804873 AGTTGAAGAGAAGAGAAACACGC 59.195 43.478 0.00 0.00 0.00 5.34
949 982 3.735237 TGAAGAGAAGAGAAACACGCT 57.265 42.857 0.00 0.00 0.00 5.07
1428 1461 1.153289 CTTCGCCTGCTGCCTGTAT 60.153 57.895 0.00 0.00 36.24 2.29
1429 1462 0.104855 CTTCGCCTGCTGCCTGTATA 59.895 55.000 0.00 0.00 36.24 1.47
1439 1472 0.839277 TGCCTGTATATGCCACTGCT 59.161 50.000 0.00 0.00 38.71 4.24
1450 1483 1.068753 CCACTGCTATCTGCCCTCG 59.931 63.158 0.00 0.00 42.00 4.63
1483 1517 4.628333 CCTGCCTTCGTTTCGTTATCTTTA 59.372 41.667 0.00 0.00 0.00 1.85
1484 1518 5.220416 CCTGCCTTCGTTTCGTTATCTTTAG 60.220 44.000 0.00 0.00 0.00 1.85
1518 1552 1.227263 GTGCGTGCGGATGGAGTAT 60.227 57.895 0.00 0.00 0.00 2.12
1599 1633 4.980702 CTGCTGGGGTTGCTGGCA 62.981 66.667 0.00 0.00 0.00 4.92
1725 1759 1.606668 GAGTGTTGGGTTTCGAATGCA 59.393 47.619 0.00 0.00 0.00 3.96
1774 1811 2.565391 TGATGAAACGAGCTAGGTGGAA 59.435 45.455 11.15 0.00 0.00 3.53
1812 1849 5.451937 GCATTACTGACAGTGTAGAGGCATA 60.452 44.000 18.58 0.00 0.00 3.14
1832 1869 7.054751 GGCATAGGTCCTTTGTTTTCTAGTAT 58.945 38.462 10.61 0.00 0.00 2.12
1833 1870 8.208903 GGCATAGGTCCTTTGTTTTCTAGTATA 58.791 37.037 10.61 0.00 0.00 1.47
1834 1871 9.609346 GCATAGGTCCTTTGTTTTCTAGTATAA 57.391 33.333 10.61 0.00 0.00 0.98
2115 2169 9.629878 ACTTAGTCATAATATATACTCCCTCCG 57.370 37.037 0.00 0.00 0.00 4.63
2116 2170 9.629878 CTTAGTCATAATATATACTCCCTCCGT 57.370 37.037 0.00 0.00 0.00 4.69
2117 2171 9.624373 TTAGTCATAATATATACTCCCTCCGTC 57.376 37.037 0.00 0.00 0.00 4.79
2118 2172 7.061688 AGTCATAATATATACTCCCTCCGTCC 58.938 42.308 0.00 0.00 0.00 4.79
2119 2173 6.264970 GTCATAATATATACTCCCTCCGTCCC 59.735 46.154 0.00 0.00 0.00 4.46
2120 2174 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
2121 2175 4.687262 ATATATACTCCCTCCGTCCCAA 57.313 45.455 0.00 0.00 0.00 4.12
2122 2176 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2123 2177 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2124 2178 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2125 2179 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2126 2180 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2127 2181 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2128 2182 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2129 2183 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2130 2184 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2131 2185 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2132 2186 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2133 2187 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2134 2188 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2135 2189 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2136 2190 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2137 2191 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2138 2192 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2139 2193 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2140 2194 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2141 2195 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2142 2196 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2143 2197 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2144 2198 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2150 2204 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2151 2205 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2152 2206 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
2153 2207 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
2154 2208 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2155 2209 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
2161 2215 9.828039 ACTTTGTACTAACTTTGTACTAAAGCT 57.172 29.630 21.28 7.77 39.34 3.74
2178 2232 7.723324 ACTAAAGCTAGTACAAAGTTGAGTCA 58.277 34.615 0.00 0.00 36.56 3.41
2179 2233 6.846325 AAAGCTAGTACAAAGTTGAGTCAC 57.154 37.500 0.00 0.00 0.00 3.67
2180 2234 5.793030 AGCTAGTACAAAGTTGAGTCACT 57.207 39.130 0.00 0.00 0.00 3.41
2181 2235 6.163135 AGCTAGTACAAAGTTGAGTCACTT 57.837 37.500 0.00 0.00 38.74 3.16
2182 2236 7.286215 AGCTAGTACAAAGTTGAGTCACTTA 57.714 36.000 0.00 0.00 35.87 2.24
2183 2237 7.897864 AGCTAGTACAAAGTTGAGTCACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2184 2238 8.368668 AGCTAGTACAAAGTTGAGTCACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2185 2239 8.989980 GCTAGTACAAAGTTGAGTCACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2188 2242 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2189 2243 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2190 2244 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2191 2245 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2192 2246 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2193 2247 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2194 2248 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2195 2249 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2196 2250 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2197 2251 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2198 2252 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2199 2253 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2254 2426 5.066375 TGCAGCATGTTTCTTATTCGCTATT 59.934 36.000 0.00 0.00 39.31 1.73
2518 2701 8.305317 CCTACTCCCTCCGTAAAGAAATATAAG 58.695 40.741 0.00 0.00 0.00 1.73
2545 2728 9.593134 AGTGTTTAGATCATTCAAGTAGTGATC 57.407 33.333 6.50 6.50 45.33 2.92
2549 2732 9.958180 TTTAGATCATTCAAGTAGTGATCCAAA 57.042 29.630 10.09 7.31 45.85 3.28
2623 2806 6.478673 GGTTACCAATTTTCTTTCACACCTTG 59.521 38.462 0.00 0.00 0.00 3.61
2753 2939 9.968870 TTTTATTTTGAATGGTGTTACCTGTAC 57.031 29.630 0.00 0.00 39.58 2.90
2881 3067 4.458989 GGTTGAGTTATGCAGGTGAATGAA 59.541 41.667 0.00 0.00 0.00 2.57
2884 3070 3.356290 AGTTATGCAGGTGAATGAACCC 58.644 45.455 0.00 0.00 41.54 4.11
2888 3074 2.676748 TGCAGGTGAATGAACCCTTTT 58.323 42.857 0.00 0.00 41.54 2.27
2906 3092 5.492895 CCTTTTACCTCTCTCCTTCCTTTC 58.507 45.833 0.00 0.00 0.00 2.62
2929 3115 9.496873 TTTCCGTTTCTTCTGATTATTCTTGTA 57.503 29.630 0.00 0.00 0.00 2.41
2930 3116 9.667107 TTCCGTTTCTTCTGATTATTCTTGTAT 57.333 29.630 0.00 0.00 0.00 2.29
3034 3220 4.644685 GCAAATAAGAATAGGAGGGCACAA 59.355 41.667 0.00 0.00 0.00 3.33
3125 3311 3.741476 GCCACTGCCCTGAAAGCG 61.741 66.667 0.00 0.00 0.00 4.68
3334 3532 8.970859 TTTGGCATTAAAGAATTTTTGGAAGA 57.029 26.923 0.00 0.00 40.09 2.87
3358 3556 8.936864 AGAAATTTCGGAGTTCTTAATACAGTG 58.063 33.333 12.42 0.00 39.50 3.66
3420 3627 1.071542 TGTCCTTGATCTTGCACGGAA 59.928 47.619 0.00 0.00 37.86 4.30
3434 3641 2.290464 CACGGAAGTTTGTGTGGGTAA 58.710 47.619 0.00 0.00 46.40 2.85
3438 3645 4.939439 ACGGAAGTTTGTGTGGGTAATATC 59.061 41.667 0.00 0.00 46.40 1.63
3513 3735 2.763448 CTCTGGGGTTTCCTCTCTACAG 59.237 54.545 0.00 0.00 36.20 2.74
3538 3760 3.638627 CTCTGCTTTGGGTTTTTCTCCTT 59.361 43.478 0.00 0.00 0.00 3.36
3577 3799 7.554118 TCTTAGAAATAATGCTCCCTTGTCTTG 59.446 37.037 0.00 0.00 0.00 3.02
3591 3814 8.807948 TCCCTTGTCTTGGAAATAATCTAAAG 57.192 34.615 0.00 0.00 0.00 1.85
3592 3815 8.390921 TCCCTTGTCTTGGAAATAATCTAAAGT 58.609 33.333 0.00 0.00 0.00 2.66
3806 4031 8.677300 CAATATGATGGGTGTAAGGTAATATGC 58.323 37.037 0.00 0.00 0.00 3.14
3819 4044 5.300752 AGGTAATATGCTTGACTCGATTGG 58.699 41.667 0.00 0.00 0.00 3.16
3855 4081 9.234827 CTGAAATATATATGCCTCATTCCAACA 57.765 33.333 0.00 0.00 0.00 3.33
3865 4091 2.813754 CTCATTCCAACACACGGACAAT 59.186 45.455 0.00 0.00 30.29 2.71
3866 4092 3.218453 TCATTCCAACACACGGACAATT 58.782 40.909 0.00 0.00 30.29 2.32
3894 4122 2.679450 ACACAATAGACGCAAACGCTA 58.321 42.857 0.00 0.00 45.53 4.26
3910 4138 7.891220 CGCAAACGCTAATACATACACATATAC 59.109 37.037 0.00 0.00 0.00 1.47
3911 4139 8.166706 GCAAACGCTAATACATACACATATACC 58.833 37.037 0.00 0.00 0.00 2.73
3924 4154 6.374417 ACACATATACCCATCCCTATGAAC 57.626 41.667 0.00 0.00 34.84 3.18
3928 4158 0.916086 ACCCATCCCTATGAACGCAA 59.084 50.000 0.00 0.00 34.84 4.85
3929 4159 1.494721 ACCCATCCCTATGAACGCAAT 59.505 47.619 0.00 0.00 34.84 3.56
3930 4160 1.881973 CCCATCCCTATGAACGCAATG 59.118 52.381 0.00 0.00 34.84 2.82
3933 4163 0.465460 TCCCTATGAACGCAATGCCC 60.465 55.000 0.00 0.00 0.00 5.36
3934 4164 0.466189 CCCTATGAACGCAATGCCCT 60.466 55.000 0.00 0.00 0.00 5.19
3935 4165 1.202758 CCCTATGAACGCAATGCCCTA 60.203 52.381 0.00 0.00 0.00 3.53
3936 4166 2.553028 CCCTATGAACGCAATGCCCTAT 60.553 50.000 0.00 0.00 0.00 2.57
3937 4167 2.744202 CCTATGAACGCAATGCCCTATC 59.256 50.000 0.00 0.00 0.00 2.08
3938 4168 2.645838 ATGAACGCAATGCCCTATCT 57.354 45.000 0.00 0.00 0.00 1.98
3939 4169 1.953559 TGAACGCAATGCCCTATCTC 58.046 50.000 0.00 0.00 0.00 2.75
3941 4171 2.698274 TGAACGCAATGCCCTATCTCTA 59.302 45.455 0.00 0.00 0.00 2.43
3942 4172 3.324846 TGAACGCAATGCCCTATCTCTAT 59.675 43.478 0.00 0.00 0.00 1.98
3943 4173 4.526650 TGAACGCAATGCCCTATCTCTATA 59.473 41.667 0.00 0.00 0.00 1.31
3944 4174 5.011635 TGAACGCAATGCCCTATCTCTATAA 59.988 40.000 0.00 0.00 0.00 0.98
3947 4177 5.221641 ACGCAATGCCCTATCTCTATAAACA 60.222 40.000 0.00 0.00 0.00 2.83
3948 4178 5.120830 CGCAATGCCCTATCTCTATAAACAC 59.879 44.000 0.00 0.00 0.00 3.32
3951 4181 4.827789 TGCCCTATCTCTATAAACACCCT 58.172 43.478 0.00 0.00 0.00 4.34
3952 4182 5.224441 TGCCCTATCTCTATAAACACCCTT 58.776 41.667 0.00 0.00 0.00 3.95
3955 4185 6.183361 GCCCTATCTCTATAAACACCCTTGAA 60.183 42.308 0.00 0.00 0.00 2.69
3957 4187 7.934120 CCCTATCTCTATAAACACCCTTGAAAG 59.066 40.741 0.00 0.00 0.00 2.62
3958 4188 8.705594 CCTATCTCTATAAACACCCTTGAAAGA 58.294 37.037 0.00 0.00 0.00 2.52
3959 4189 9.535878 CTATCTCTATAAACACCCTTGAAAGAC 57.464 37.037 0.00 0.00 0.00 3.01
3976 4206 6.359804 TGAAAGACTGAGCTGGCATATAATT 58.640 36.000 0.00 0.00 0.00 1.40
3981 4211 6.830324 AGACTGAGCTGGCATATAATTTTGAA 59.170 34.615 0.00 0.00 0.00 2.69
3983 4213 8.015185 ACTGAGCTGGCATATAATTTTGAAAT 57.985 30.769 0.00 0.00 0.00 2.17
3987 4217 8.652810 AGCTGGCATATAATTTTGAAATTGAC 57.347 30.769 11.02 0.00 38.90 3.18
3998 4228 6.314896 AATTTTGAAATTGACGAAGTTGCCAA 59.685 30.769 1.14 0.00 35.37 4.52
4009 4239 4.954238 GAAGTTGCCAAAAACATCTTCG 57.046 40.909 0.00 0.00 35.38 3.79
4010 4240 2.742774 AGTTGCCAAAAACATCTTCGC 58.257 42.857 0.00 0.00 32.21 4.70
4013 4243 1.000385 TGCCAAAAACATCTTCGCAGG 60.000 47.619 0.00 0.00 0.00 4.85
4015 4245 1.330306 CAAAAACATCTTCGCAGGCG 58.670 50.000 7.46 7.46 41.35 5.52
4029 4259 0.600255 CAGGCGACGGAACATATCCC 60.600 60.000 0.00 0.00 46.39 3.85
4036 4266 3.195661 GACGGAACATATCCCACTGAAC 58.804 50.000 0.00 0.00 46.39 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.737063 GCCATCTTCTTTTGACTTTGAAGCA 60.737 40.000 0.00 0.00 36.72 3.91
1 2 4.683320 GCCATCTTCTTTTGACTTTGAAGC 59.317 41.667 0.00 0.00 36.72 3.86
29 30 2.359900 AGATTGGCGAGTTTGTGGATC 58.640 47.619 0.00 0.00 0.00 3.36
175 176 3.839432 CTTCCGAGGAGACCCGGC 61.839 72.222 0.00 0.00 44.96 6.13
182 183 2.125912 CGTGGCACTTCCGAGGAG 60.126 66.667 16.72 0.00 37.80 3.69
308 310 0.804989 GTTCTTCCGCAACATGAGGG 59.195 55.000 0.00 0.00 37.94 4.30
340 342 2.554032 GAGTTCACATGGACAAAGGGTG 59.446 50.000 0.00 0.00 0.00 4.61
422 424 0.809385 GGAAGACGACCTCGATGACA 59.191 55.000 0.78 0.00 43.02 3.58
749 773 2.343484 ATGGCCTCATCTGTGTCATG 57.657 50.000 3.32 0.00 0.00 3.07
759 783 4.043812 AGGCTATCATTACAATGGCCTCAT 59.956 41.667 14.04 0.00 43.53 2.90
903 936 1.398692 AGAAGATCAGGAGGAGCGAC 58.601 55.000 0.00 0.00 36.90 5.19
912 945 8.839310 TTCTCTTCAACTTAAAGAAGATCAGG 57.161 34.615 12.41 4.83 46.40 3.86
913 946 9.703892 TCTTCTCTTCAACTTAAAGAAGATCAG 57.296 33.333 12.41 11.37 46.40 2.90
915 948 9.921637 TCTCTTCTCTTCAACTTAAAGAAGATC 57.078 33.333 12.12 0.00 46.42 2.75
919 952 9.667107 TGTTTCTCTTCTCTTCAACTTAAAGAA 57.333 29.630 0.00 0.00 32.60 2.52
920 953 9.099454 GTGTTTCTCTTCTCTTCAACTTAAAGA 57.901 33.333 0.00 0.00 0.00 2.52
921 954 8.058915 CGTGTTTCTCTTCTCTTCAACTTAAAG 58.941 37.037 0.00 0.00 0.00 1.85
949 982 3.225798 GGTGGTGGCTGCTTTGCA 61.226 61.111 0.00 0.00 36.92 4.08
998 1031 1.405461 CTTGAACGACGACGACATGT 58.595 50.000 15.32 0.00 42.66 3.21
1439 1472 1.860641 TGAAGGAACGAGGGCAGATA 58.139 50.000 0.00 0.00 0.00 1.98
1450 1483 1.339151 ACGAAGGCAGGATGAAGGAAC 60.339 52.381 0.00 0.00 39.69 3.62
1483 1517 1.229428 CACGGACATGCAAAGACACT 58.771 50.000 0.00 0.00 0.00 3.55
1484 1518 0.385974 GCACGGACATGCAAAGACAC 60.386 55.000 0.00 0.00 45.39 3.67
2093 2147 7.061688 GGACGGAGGGAGTATATATTATGACT 58.938 42.308 0.00 0.00 0.00 3.41
2102 2156 3.339713 TTTGGGACGGAGGGAGTATAT 57.660 47.619 0.00 0.00 0.00 0.86
2105 2159 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2106 2160 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2107 2161 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2108 2162 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2109 2163 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2110 2164 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2111 2165 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2112 2166 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2113 2167 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2114 2168 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2115 2169 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2116 2170 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2117 2171 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2118 2172 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2124 2178 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2125 2179 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
2126 2180 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
2127 2181 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
2128 2182 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
2129 2183 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
2135 2189 9.828039 AGCTTTAGTACAAAGTTAGTACAAAGT 57.172 29.630 18.27 10.22 43.24 2.66
2152 2206 8.853126 TGACTCAACTTTGTACTAGCTTTAGTA 58.147 33.333 0.00 0.00 0.00 1.82
2153 2207 7.652507 GTGACTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
2154 2208 7.868415 AGTGACTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
2155 2209 7.723324 AGTGACTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
2156 2210 6.583562 AGTGACTCAACTTTGTACTAGCTTT 58.416 36.000 0.00 0.00 0.00 3.51
2157 2211 6.163135 AGTGACTCAACTTTGTACTAGCTT 57.837 37.500 0.00 0.00 0.00 3.74
2158 2212 5.793030 AGTGACTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2159 2213 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2162 2216 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2163 2217 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2164 2218 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2165 2219 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2166 2220 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2167 2221 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2168 2222 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2169 2223 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2170 2224 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2171 2225 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2172 2226 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2173 2227 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2174 2228 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2175 2229 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2176 2230 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2177 2231 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2178 2232 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2179 2233 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2180 2234 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2181 2235 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2182 2236 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2183 2237 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2184 2238 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2185 2239 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2186 2240 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2187 2241 5.247792 ACATAATAAATACTCCCTCCGTCCC 59.752 44.000 0.00 0.00 0.00 4.46
2188 2242 6.356186 ACATAATAAATACTCCCTCCGTCC 57.644 41.667 0.00 0.00 0.00 4.79
2189 2243 9.939802 AATTACATAATAAATACTCCCTCCGTC 57.060 33.333 0.00 0.00 0.00 4.79
2226 2397 4.365723 GAATAAGAAACATGCTGCATGGG 58.634 43.478 37.16 20.18 45.16 4.00
2254 2426 5.363580 TGTGTGACAGCTCCTCATGATATAA 59.636 40.000 0.00 0.00 0.00 0.98
2359 2541 2.689983 CTGGGCACATGGATTAAACTCC 59.310 50.000 0.00 0.00 35.74 3.85
2518 2701 8.988064 TCACTACTTGAATGATCTAAACACTC 57.012 34.615 0.00 0.00 0.00 3.51
2549 2732 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
2623 2806 0.543277 TCATCTGTGCAGGTGGGATC 59.457 55.000 11.97 0.00 39.94 3.36
2670 2856 8.294577 AGGTATGGTATTCAAAACGAAAAGAAC 58.705 33.333 0.00 0.00 37.12 3.01
2743 2929 4.496673 CGAGAGCATCAGAGTACAGGTAAC 60.497 50.000 0.00 0.00 37.82 2.50
2753 2939 3.876914 AGTTAGAGACGAGAGCATCAGAG 59.123 47.826 0.00 0.00 37.82 3.35
2809 2995 7.813852 GCAGGTTGCATACATATAGTAGTAC 57.186 40.000 0.00 0.00 44.26 2.73
2881 3067 3.181394 AGGAAGGAGAGAGGTAAAAGGGT 60.181 47.826 0.00 0.00 0.00 4.34
2884 3070 5.492895 GGAAAGGAAGGAGAGAGGTAAAAG 58.507 45.833 0.00 0.00 0.00 2.27
2888 3074 2.042706 ACGGAAAGGAAGGAGAGAGGTA 59.957 50.000 0.00 0.00 0.00 3.08
2929 3115 5.473162 TGCAAAACATAGCACACTGAGTTAT 59.527 36.000 0.00 0.00 35.51 1.89
2930 3116 4.819088 TGCAAAACATAGCACACTGAGTTA 59.181 37.500 0.00 0.00 35.51 2.24
2936 3122 3.213506 TGACTGCAAAACATAGCACACT 58.786 40.909 0.00 0.00 36.62 3.55
3034 3220 1.608283 GGCAACTAGCTTCGTCTTGGT 60.608 52.381 0.00 0.00 44.79 3.67
3091 3277 1.061570 GCTCCACCGTACTACGACG 59.938 63.158 10.27 0.00 46.05 5.12
3125 3311 4.740695 GCACACGATCTTAGGTGTAGAATC 59.259 45.833 4.12 0.00 45.03 2.52
3334 3532 8.617290 ACACTGTATTAAGAACTCCGAAATTT 57.383 30.769 0.00 0.00 0.00 1.82
3397 3595 3.055458 TCCGTGCAAGATCAAGGACATAA 60.055 43.478 0.00 0.00 39.19 1.90
3456 3663 7.309194 GCTTCCAACAGCCTTATTAAGAAAAGA 60.309 37.037 4.96 0.00 33.21 2.52
3471 3678 0.037046 CCCAATTGGCTTCCAACAGC 60.037 55.000 19.75 0.00 46.95 4.40
3487 3694 3.264845 GGAAACCCCAGAGGCCCA 61.265 66.667 0.00 0.00 40.58 5.36
3488 3695 2.941583 AGGAAACCCCAGAGGCCC 60.942 66.667 0.00 0.00 40.58 5.80
3491 3698 2.112190 GTAGAGAGGAAACCCCAGAGG 58.888 57.143 0.00 0.00 43.78 3.69
3493 3700 2.821437 CTGTAGAGAGGAAACCCCAGA 58.179 52.381 0.00 0.00 37.41 3.86
3494 3701 1.208293 GCTGTAGAGAGGAAACCCCAG 59.792 57.143 0.00 0.00 37.41 4.45
3527 3749 1.535896 GGGAGCGTGAAGGAGAAAAAC 59.464 52.381 0.00 0.00 0.00 2.43
3538 3760 1.919240 TCTAAGACAAGGGAGCGTGA 58.081 50.000 0.00 0.00 0.00 4.35
3681 3906 7.826744 TGCAGGACATAATATCGGCAATATTTA 59.173 33.333 8.38 0.00 40.35 1.40
3686 3911 4.019792 TGCAGGACATAATATCGGCAAT 57.980 40.909 0.00 0.00 0.00 3.56
3692 3917 9.970395 TTTGATTTCAATGCAGGACATAATATC 57.030 29.630 0.00 0.00 38.34 1.63
3806 4031 5.440685 GTGTTAAACACCAATCGAGTCAAG 58.559 41.667 0.00 0.00 43.05 3.02
3885 4113 8.166706 GGTATATGTGTATGTATTAGCGTTTGC 58.833 37.037 0.00 0.00 43.24 3.68
3894 4122 9.744125 ATAGGGATGGGTATATGTGTATGTATT 57.256 33.333 0.00 0.00 0.00 1.89
3910 4138 1.881973 CATTGCGTTCATAGGGATGGG 59.118 52.381 0.00 0.00 33.49 4.00
3911 4139 1.267806 GCATTGCGTTCATAGGGATGG 59.732 52.381 0.00 0.00 33.49 3.51
3924 4154 5.120830 GTGTTTATAGAGATAGGGCATTGCG 59.879 44.000 1.91 0.00 0.00 4.85
3928 4158 5.415961 AGGGTGTTTATAGAGATAGGGCAT 58.584 41.667 0.00 0.00 0.00 4.40
3929 4159 4.827789 AGGGTGTTTATAGAGATAGGGCA 58.172 43.478 0.00 0.00 0.00 5.36
3930 4160 5.307196 TCAAGGGTGTTTATAGAGATAGGGC 59.693 44.000 0.00 0.00 0.00 5.19
3933 4163 9.535878 GTCTTTCAAGGGTGTTTATAGAGATAG 57.464 37.037 0.00 0.00 0.00 2.08
3934 4164 9.268282 AGTCTTTCAAGGGTGTTTATAGAGATA 57.732 33.333 0.00 0.00 0.00 1.98
3935 4165 8.043710 CAGTCTTTCAAGGGTGTTTATAGAGAT 58.956 37.037 0.00 0.00 0.00 2.75
3936 4166 7.234782 TCAGTCTTTCAAGGGTGTTTATAGAGA 59.765 37.037 0.00 0.00 0.00 3.10
3937 4167 7.386851 TCAGTCTTTCAAGGGTGTTTATAGAG 58.613 38.462 0.00 0.00 0.00 2.43
3938 4168 7.311092 TCAGTCTTTCAAGGGTGTTTATAGA 57.689 36.000 0.00 0.00 0.00 1.98
3939 4169 6.092807 GCTCAGTCTTTCAAGGGTGTTTATAG 59.907 42.308 0.00 0.00 0.00 1.31
3941 4171 4.762251 GCTCAGTCTTTCAAGGGTGTTTAT 59.238 41.667 0.00 0.00 0.00 1.40
3942 4172 4.134563 GCTCAGTCTTTCAAGGGTGTTTA 58.865 43.478 0.00 0.00 0.00 2.01
3943 4173 2.952310 GCTCAGTCTTTCAAGGGTGTTT 59.048 45.455 0.00 0.00 0.00 2.83
3944 4174 2.173569 AGCTCAGTCTTTCAAGGGTGTT 59.826 45.455 0.00 0.00 0.00 3.32
3947 4177 1.072965 CCAGCTCAGTCTTTCAAGGGT 59.927 52.381 0.00 0.00 0.00 4.34
3948 4178 1.818642 CCAGCTCAGTCTTTCAAGGG 58.181 55.000 0.00 0.00 0.00 3.95
3951 4181 2.574006 ATGCCAGCTCAGTCTTTCAA 57.426 45.000 0.00 0.00 0.00 2.69
3952 4182 3.920231 ATATGCCAGCTCAGTCTTTCA 57.080 42.857 0.00 0.00 0.00 2.69
3955 4185 6.830324 TCAAAATTATATGCCAGCTCAGTCTT 59.170 34.615 0.00 0.00 0.00 3.01
3957 4187 6.624352 TCAAAATTATATGCCAGCTCAGTC 57.376 37.500 0.00 0.00 0.00 3.51
3958 4188 7.408756 TTTCAAAATTATATGCCAGCTCAGT 57.591 32.000 0.00 0.00 0.00 3.41
3959 4189 8.761497 CAATTTCAAAATTATATGCCAGCTCAG 58.239 33.333 0.63 0.00 36.52 3.35
3976 4206 4.377839 TGGCAACTTCGTCAATTTCAAA 57.622 36.364 0.00 0.00 37.61 2.69
3981 4211 4.499183 TGTTTTTGGCAACTTCGTCAATT 58.501 34.783 0.00 0.00 28.99 2.32
3983 4213 3.577649 TGTTTTTGGCAACTTCGTCAA 57.422 38.095 0.00 0.00 37.61 3.18
3987 4217 4.954238 GAAGATGTTTTTGGCAACTTCG 57.046 40.909 0.00 0.00 36.52 3.79
3998 4228 2.927004 TCGCCTGCGAAGATGTTTT 58.073 47.368 12.40 0.00 46.01 2.43
4009 4239 1.222115 GGATATGTTCCGTCGCCTGC 61.222 60.000 0.00 0.00 33.93 4.85
4010 4240 0.600255 GGGATATGTTCCGTCGCCTG 60.600 60.000 0.00 0.00 46.52 4.85
4013 4243 0.104304 AGTGGGATATGTTCCGTCGC 59.896 55.000 0.00 0.00 46.52 5.19
4015 4245 3.195661 GTTCAGTGGGATATGTTCCGTC 58.804 50.000 0.00 0.00 46.52 4.79
4017 4247 2.201732 CGTTCAGTGGGATATGTTCCG 58.798 52.381 0.00 0.00 46.52 4.30
4018 4248 1.940613 GCGTTCAGTGGGATATGTTCC 59.059 52.381 0.00 0.00 44.62 3.62
4023 4253 2.803133 CGATGTGCGTTCAGTGGGATAT 60.803 50.000 0.00 0.00 34.64 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.