Multiple sequence alignment - TraesCS5D01G169800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G169800 chr5D 100.000 4989 0 0 1 4989 266177267 266172279 0.000000e+00 9214.0
1 TraesCS5D01G169800 chr5D 95.280 339 15 1 1 339 266177446 266177783 2.040000e-148 536.0
2 TraesCS5D01G169800 chr5D 95.166 331 13 3 20 347 277697709 277698039 2.060000e-143 520.0
3 TraesCS5D01G169800 chr5D 93.713 334 16 5 20 351 277697513 277697183 3.470000e-136 496.0
4 TraesCS5D01G169800 chr5D 79.646 113 19 4 2778 2888 453089592 453089702 1.490000e-10 78.7
5 TraesCS5D01G169800 chr5A 94.679 2199 78 22 2368 4539 354280161 354282347 0.000000e+00 3376.0
6 TraesCS5D01G169800 chr5A 88.034 702 36 14 721 1400 354276966 354277641 0.000000e+00 787.0
7 TraesCS5D01G169800 chr5A 94.588 425 18 2 1629 2052 354278047 354278467 0.000000e+00 652.0
8 TraesCS5D01G169800 chr5A 96.774 310 9 1 2060 2368 354279070 354279379 2.660000e-142 516.0
9 TraesCS5D01G169800 chr5A 83.213 417 43 15 4542 4938 354282466 354282875 1.710000e-94 357.0
10 TraesCS5D01G169800 chr5A 79.661 118 22 2 2772 2888 706228848 706228964 3.200000e-12 84.2
11 TraesCS5D01G169800 chr5B 93.974 1394 64 8 2780 4156 299911638 299910248 0.000000e+00 2091.0
12 TraesCS5D01G169800 chr5B 90.211 1185 68 21 344 1503 299913682 299912521 0.000000e+00 1502.0
13 TraesCS5D01G169800 chr5B 95.174 373 15 1 1680 2052 299912193 299911824 2.000000e-163 586.0
14 TraesCS5D01G169800 chr5B 92.353 340 26 0 1 340 424104462 424104123 7.510000e-133 484.0
15 TraesCS5D01G169800 chr5B 87.037 432 29 5 4155 4559 299909989 299909558 3.520000e-126 462.0
16 TraesCS5D01G169800 chr5B 89.247 186 17 2 4749 4933 299902351 299902168 3.880000e-56 230.0
17 TraesCS5D01G169800 chr5B 81.955 133 24 0 2928 3060 144591957 144592089 4.080000e-21 113.0
18 TraesCS5D01G169800 chr5B 82.353 102 16 2 2788 2888 631572290 631572390 2.470000e-13 87.9
19 TraesCS5D01G169800 chr7D 95.294 340 15 1 1 340 191893228 191893566 5.680000e-149 538.0
20 TraesCS5D01G169800 chr7D 80.357 112 19 3 2778 2888 487072938 487072829 1.150000e-11 82.4
21 TraesCS5D01G169800 chr7D 79.630 108 18 4 2778 2884 546539497 546539393 1.930000e-09 75.0
22 TraesCS5D01G169800 chr3D 95.294 340 14 2 1 339 307665523 307665861 5.680000e-149 538.0
23 TraesCS5D01G169800 chr3D 89.785 186 19 0 600 785 411557244 411557429 6.450000e-59 239.0
24 TraesCS5D01G169800 chr3D 90.244 164 14 2 1509 1671 598889733 598889895 3.910000e-51 213.0
25 TraesCS5D01G169800 chr3D 90.062 161 13 3 1497 1655 540564734 540564893 6.550000e-49 206.0
26 TraesCS5D01G169800 chr2D 94.362 337 18 1 1 337 499971484 499971819 2.660000e-142 516.0
27 TraesCS5D01G169800 chr2D 80.357 112 20 2 2778 2888 400710778 400710888 3.200000e-12 84.2
28 TraesCS5D01G169800 chr2D 80.357 112 19 3 2778 2888 26894729 26894620 1.150000e-11 82.4
29 TraesCS5D01G169800 chr2A 93.605 344 20 2 1 344 753310860 753311201 3.440000e-141 512.0
30 TraesCS5D01G169800 chr2A 89.571 163 15 2 1509 1670 249754619 249754458 6.550000e-49 206.0
31 TraesCS5D01G169800 chr2A 83.212 137 21 2 2925 3060 28184758 28184623 1.890000e-24 124.0
32 TraesCS5D01G169800 chr2A 80.357 112 19 3 2778 2888 286064641 286064750 1.150000e-11 82.4
33 TraesCS5D01G169800 chr1D 92.690 342 24 1 1 341 234028720 234029061 4.490000e-135 492.0
34 TraesCS5D01G169800 chr1D 85.161 155 22 1 3340 3494 166829528 166829375 1.860000e-34 158.0
35 TraesCS5D01G169800 chr6D 77.701 435 57 18 383 780 29844851 29844420 3.880000e-56 230.0
36 TraesCS5D01G169800 chr6D 89.571 163 15 2 1509 1670 351233595 351233434 6.550000e-49 206.0
37 TraesCS5D01G169800 chr6D 89.506 162 15 2 1509 1669 90112398 90112238 2.350000e-48 204.0
38 TraesCS5D01G169800 chr6A 89.881 168 15 2 1506 1672 442395553 442395719 1.090000e-51 215.0
39 TraesCS5D01G169800 chr6A 88.166 169 18 2 1502 1669 297641214 297641381 3.050000e-47 200.0
40 TraesCS5D01G169800 chr6A 81.955 133 24 0 2928 3060 68987170 68987038 4.080000e-21 113.0
41 TraesCS5D01G169800 chr6A 81.955 133 24 0 2928 3060 539541555 539541423 4.080000e-21 113.0
42 TraesCS5D01G169800 chr6A 81.203 133 25 0 2928 3060 81877201 81877333 1.900000e-19 108.0
43 TraesCS5D01G169800 chr6A 80.000 110 19 3 2778 2886 578651384 578651491 1.490000e-10 78.7
44 TraesCS5D01G169800 chr4B 89.506 162 15 2 1509 1669 28724144 28724304 2.350000e-48 204.0
45 TraesCS5D01G169800 chr4B 83.908 87 9 5 2778 2861 615678978 615679062 1.490000e-10 78.7
46 TraesCS5D01G169800 chr3A 89.506 162 14 3 1509 1669 726768969 726769128 8.470000e-48 202.0
47 TraesCS5D01G169800 chrUn 87.097 155 19 1 3340 3494 5350561 5350714 1.850000e-39 174.0
48 TraesCS5D01G169800 chr1A 87.313 134 16 1 3340 3473 230159663 230159795 8.650000e-33 152.0
49 TraesCS5D01G169800 chr1A 81.955 133 24 0 2928 3060 116704511 116704379 4.080000e-21 113.0
50 TraesCS5D01G169800 chr1A 81.955 133 24 0 2928 3060 394600256 394600124 4.080000e-21 113.0
51 TraesCS5D01G169800 chr3B 82.707 133 23 0 2928 3060 636264472 636264340 8.770000e-23 119.0
52 TraesCS5D01G169800 chr7B 81.955 133 24 0 2928 3060 595322399 595322531 4.080000e-21 113.0
53 TraesCS5D01G169800 chr7B 80.556 144 26 2 603 745 749109902 749109760 5.280000e-20 110.0
54 TraesCS5D01G169800 chr7A 81.955 133 24 0 2928 3060 594457987 594457855 4.080000e-21 113.0
55 TraesCS5D01G169800 chr4D 81.203 133 25 0 2928 3060 175106463 175106331 1.900000e-19 108.0
56 TraesCS5D01G169800 chr4D 85.057 87 8 5 2778 2861 321005346 321005430 3.200000e-12 84.2
57 TraesCS5D01G169800 chr4D 82.558 86 12 3 2778 2861 302454014 302454098 6.930000e-09 73.1
58 TraesCS5D01G169800 chr1B 78.912 147 22 6 2778 2920 236530447 236530588 1.910000e-14 91.6
59 TraesCS5D01G169800 chr1B 85.333 75 8 3 2789 2861 272579612 272579539 1.930000e-09 75.0
60 TraesCS5D01G169800 chr1B 78.571 112 20 4 2778 2888 431807381 431807489 2.490000e-08 71.3
61 TraesCS5D01G169800 chr6B 79.646 113 18 5 2778 2888 251918243 251918352 5.360000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G169800 chr5D 266172279 266177267 4988 True 9214.00 9214 100.0000 1 4989 1 chr5D.!!$R1 4988
1 TraesCS5D01G169800 chr5A 354276966 354282875 5909 False 1137.60 3376 91.4576 721 4938 5 chr5A.!!$F2 4217
2 TraesCS5D01G169800 chr5B 299909558 299913682 4124 True 1160.25 2091 91.5990 344 4559 4 chr5B.!!$R3 4215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.028770 CAAGACCGCGTGCTTTCAAA 59.971 50.0 4.92 0.00 0.0 2.69 F
304 305 0.035056 GGGGCATATCGATTGAGGGG 60.035 60.0 1.71 0.00 0.0 4.79 F
305 306 0.035056 GGGCATATCGATTGAGGGGG 60.035 60.0 1.71 0.00 0.0 5.40 F
2063 2677 0.035317 TCACGCCAATTCTGCAGACT 59.965 50.0 18.03 8.67 0.0 3.24 F
2732 4724 0.669318 GCGTCATTGTGGGAGTTCGA 60.669 55.0 0.00 0.00 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 3390 0.181350 CCTGTCCAACCTAGGGATGC 59.819 60.000 14.81 1.06 36.67 3.91 R
2239 3448 1.218316 GACCAACCAGCTACGGGAG 59.782 63.158 0.00 0.00 0.00 4.30 R
2272 3481 2.940514 TCTGGTTGGGTATGAGGAGA 57.059 50.000 0.00 0.00 0.00 3.71 R
3785 5796 0.172578 CATGCAGCCATGTCACAAGG 59.827 55.000 0.00 0.00 43.07 3.61 R
4596 7009 0.378962 TTTGACCCTTTTGCACGACG 59.621 50.000 0.00 0.00 0.00 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 9.866655 ATATTTTACTGTTCATGGTGGTATGAT 57.133 29.630 0.00 0.00 36.97 2.45
63 64 9.693739 ATTTTACTGTTCATGGTGGTATGATAA 57.306 29.630 0.00 0.00 36.97 1.75
64 65 8.731275 TTTACTGTTCATGGTGGTATGATAAG 57.269 34.615 0.00 0.00 36.97 1.73
65 66 6.560003 ACTGTTCATGGTGGTATGATAAGA 57.440 37.500 0.00 0.00 36.97 2.10
66 67 6.586344 ACTGTTCATGGTGGTATGATAAGAG 58.414 40.000 0.00 0.00 36.97 2.85
67 68 5.368145 TGTTCATGGTGGTATGATAAGAGC 58.632 41.667 0.00 0.00 36.97 4.09
68 69 5.130975 TGTTCATGGTGGTATGATAAGAGCT 59.869 40.000 0.00 0.00 36.97 4.09
69 70 6.326323 TGTTCATGGTGGTATGATAAGAGCTA 59.674 38.462 0.00 0.00 36.97 3.32
70 71 6.994421 TCATGGTGGTATGATAAGAGCTAA 57.006 37.500 0.00 0.00 32.39 3.09
71 72 7.373617 TCATGGTGGTATGATAAGAGCTAAA 57.626 36.000 0.00 0.00 32.39 1.85
72 73 7.801104 TCATGGTGGTATGATAAGAGCTAAAA 58.199 34.615 0.00 0.00 32.39 1.52
73 74 7.715249 TCATGGTGGTATGATAAGAGCTAAAAC 59.285 37.037 0.00 0.00 32.39 2.43
74 75 7.195374 TGGTGGTATGATAAGAGCTAAAACT 57.805 36.000 0.00 0.00 0.00 2.66
75 76 7.272978 TGGTGGTATGATAAGAGCTAAAACTC 58.727 38.462 0.00 0.00 36.91 3.01
76 77 6.421202 GGTGGTATGATAAGAGCTAAAACTCG 59.579 42.308 0.00 0.00 41.77 4.18
77 78 7.201145 GTGGTATGATAAGAGCTAAAACTCGA 58.799 38.462 0.00 0.00 41.77 4.04
78 79 7.705325 GTGGTATGATAAGAGCTAAAACTCGAA 59.295 37.037 0.00 0.00 41.77 3.71
79 80 8.421784 TGGTATGATAAGAGCTAAAACTCGAAT 58.578 33.333 0.00 0.00 41.77 3.34
80 81 8.704234 GGTATGATAAGAGCTAAAACTCGAATG 58.296 37.037 0.00 0.00 41.77 2.67
81 82 9.250624 GTATGATAAGAGCTAAAACTCGAATGT 57.749 33.333 0.00 0.00 41.77 2.71
82 83 7.757097 TGATAAGAGCTAAAACTCGAATGTC 57.243 36.000 0.00 0.00 41.77 3.06
83 84 6.757010 TGATAAGAGCTAAAACTCGAATGTCC 59.243 38.462 0.00 0.00 41.77 4.02
84 85 4.537135 AGAGCTAAAACTCGAATGTCCA 57.463 40.909 0.00 0.00 41.77 4.02
85 86 4.246458 AGAGCTAAAACTCGAATGTCCAC 58.754 43.478 0.00 0.00 41.77 4.02
86 87 4.021016 AGAGCTAAAACTCGAATGTCCACT 60.021 41.667 0.00 0.00 41.77 4.00
87 88 4.642429 AGCTAAAACTCGAATGTCCACTT 58.358 39.130 0.00 0.00 0.00 3.16
88 89 5.790593 AGCTAAAACTCGAATGTCCACTTA 58.209 37.500 0.00 0.00 0.00 2.24
89 90 5.638234 AGCTAAAACTCGAATGTCCACTTAC 59.362 40.000 0.00 0.00 0.00 2.34
90 91 5.163884 GCTAAAACTCGAATGTCCACTTACC 60.164 44.000 0.00 0.00 0.00 2.85
91 92 4.345859 AAACTCGAATGTCCACTTACCA 57.654 40.909 0.00 0.00 0.00 3.25
92 93 4.345859 AACTCGAATGTCCACTTACCAA 57.654 40.909 0.00 0.00 0.00 3.67
93 94 3.660865 ACTCGAATGTCCACTTACCAAC 58.339 45.455 0.00 0.00 0.00 3.77
94 95 3.070446 ACTCGAATGTCCACTTACCAACA 59.930 43.478 0.00 0.00 0.00 3.33
95 96 3.395639 TCGAATGTCCACTTACCAACAC 58.604 45.455 0.00 0.00 0.00 3.32
96 97 3.070446 TCGAATGTCCACTTACCAACACT 59.930 43.478 0.00 0.00 0.00 3.55
97 98 3.813166 CGAATGTCCACTTACCAACACTT 59.187 43.478 0.00 0.00 0.00 3.16
98 99 4.274950 CGAATGTCCACTTACCAACACTTT 59.725 41.667 0.00 0.00 0.00 2.66
99 100 5.220970 CGAATGTCCACTTACCAACACTTTT 60.221 40.000 0.00 0.00 0.00 2.27
100 101 4.974368 TGTCCACTTACCAACACTTTTG 57.026 40.909 0.00 0.00 0.00 2.44
101 102 4.337145 TGTCCACTTACCAACACTTTTGT 58.663 39.130 0.00 0.00 37.67 2.83
102 103 4.396790 TGTCCACTTACCAACACTTTTGTC 59.603 41.667 0.00 0.00 33.55 3.18
103 104 4.396790 GTCCACTTACCAACACTTTTGTCA 59.603 41.667 0.00 0.00 33.55 3.58
104 105 5.067283 GTCCACTTACCAACACTTTTGTCAT 59.933 40.000 0.00 0.00 33.55 3.06
105 106 5.067153 TCCACTTACCAACACTTTTGTCATG 59.933 40.000 0.00 0.00 33.55 3.07
106 107 5.067153 CCACTTACCAACACTTTTGTCATGA 59.933 40.000 0.00 0.00 33.55 3.07
107 108 6.405286 CCACTTACCAACACTTTTGTCATGAA 60.405 38.462 0.00 0.00 33.55 2.57
108 109 7.202526 CACTTACCAACACTTTTGTCATGAAT 58.797 34.615 0.00 0.00 33.55 2.57
109 110 7.167968 CACTTACCAACACTTTTGTCATGAATG 59.832 37.037 0.00 0.00 33.55 2.67
110 111 4.370917 ACCAACACTTTTGTCATGAATGC 58.629 39.130 0.00 0.00 33.55 3.56
111 112 4.141981 ACCAACACTTTTGTCATGAATGCA 60.142 37.500 0.00 0.00 33.55 3.96
112 113 4.809958 CCAACACTTTTGTCATGAATGCAA 59.190 37.500 0.00 0.00 33.55 4.08
113 114 5.050634 CCAACACTTTTGTCATGAATGCAAG 60.051 40.000 0.00 0.33 33.55 4.01
114 115 5.266733 ACACTTTTGTCATGAATGCAAGT 57.733 34.783 0.00 0.98 0.00 3.16
115 116 5.045215 ACACTTTTGTCATGAATGCAAGTG 58.955 37.500 23.74 23.74 32.78 3.16
116 117 5.163530 ACACTTTTGTCATGAATGCAAGTGA 60.164 36.000 28.19 9.50 32.01 3.41
117 118 5.174398 CACTTTTGTCATGAATGCAAGTGAC 59.826 40.000 22.30 13.79 40.93 3.67
118 119 4.915158 TTTGTCATGAATGCAAGTGACA 57.085 36.364 17.38 17.38 46.44 3.58
121 122 4.800784 TGTCATGAATGCAAGTGACATTG 58.199 39.130 17.38 0.00 44.14 2.82
122 123 4.519730 TGTCATGAATGCAAGTGACATTGA 59.480 37.500 17.38 1.23 44.14 2.57
123 124 4.855388 GTCATGAATGCAAGTGACATTGAC 59.145 41.667 15.06 7.05 40.41 3.18
124 125 4.519730 TCATGAATGCAAGTGACATTGACA 59.480 37.500 0.00 0.00 37.85 3.58
125 126 5.184287 TCATGAATGCAAGTGACATTGACAT 59.816 36.000 0.00 0.00 37.85 3.06
126 127 6.374894 TCATGAATGCAAGTGACATTGACATA 59.625 34.615 0.00 0.00 37.85 2.29
127 128 6.762702 TGAATGCAAGTGACATTGACATAT 57.237 33.333 0.00 0.00 37.85 1.78
128 129 7.862512 TGAATGCAAGTGACATTGACATATA 57.137 32.000 0.00 0.00 37.85 0.86
129 130 7.922837 TGAATGCAAGTGACATTGACATATAG 58.077 34.615 0.00 0.00 37.85 1.31
130 131 6.872628 ATGCAAGTGACATTGACATATAGG 57.127 37.500 0.00 0.00 30.44 2.57
131 132 5.744171 TGCAAGTGACATTGACATATAGGT 58.256 37.500 0.00 0.00 31.55 3.08
132 133 5.585844 TGCAAGTGACATTGACATATAGGTG 59.414 40.000 0.00 0.00 31.55 4.00
133 134 5.817296 GCAAGTGACATTGACATATAGGTGA 59.183 40.000 0.00 0.00 31.55 4.02
134 135 6.484643 GCAAGTGACATTGACATATAGGTGAT 59.515 38.462 0.00 0.00 31.55 3.06
135 136 7.519488 GCAAGTGACATTGACATATAGGTGATG 60.519 40.741 0.00 2.08 31.55 3.07
136 137 7.129457 AGTGACATTGACATATAGGTGATGT 57.871 36.000 13.07 13.07 40.25 3.06
137 138 7.568349 AGTGACATTGACATATAGGTGATGTT 58.432 34.615 13.94 1.35 37.65 2.71
138 139 8.049117 AGTGACATTGACATATAGGTGATGTTT 58.951 33.333 13.94 4.97 37.65 2.83
139 140 8.338259 GTGACATTGACATATAGGTGATGTTTC 58.662 37.037 13.94 8.89 37.65 2.78
140 141 8.267183 TGACATTGACATATAGGTGATGTTTCT 58.733 33.333 13.94 0.00 37.65 2.52
141 142 8.668510 ACATTGACATATAGGTGATGTTTCTC 57.331 34.615 9.22 0.00 37.65 2.87
142 143 7.439356 ACATTGACATATAGGTGATGTTTCTCG 59.561 37.037 9.22 0.00 37.65 4.04
143 144 5.842907 TGACATATAGGTGATGTTTCTCGG 58.157 41.667 0.00 0.00 37.65 4.63
144 145 5.596772 TGACATATAGGTGATGTTTCTCGGA 59.403 40.000 0.00 0.00 37.65 4.55
145 146 6.097696 TGACATATAGGTGATGTTTCTCGGAA 59.902 38.462 0.00 0.00 37.65 4.30
146 147 6.281405 ACATATAGGTGATGTTTCTCGGAAC 58.719 40.000 0.00 0.00 33.70 3.62
147 148 4.819105 ATAGGTGATGTTTCTCGGAACA 57.181 40.909 0.00 0.00 43.08 3.18
154 155 3.363341 TGTTTCTCGGAACATTTTGGC 57.637 42.857 0.00 0.00 34.77 4.52
155 156 2.690497 TGTTTCTCGGAACATTTTGGCA 59.310 40.909 0.00 0.00 34.77 4.92
156 157 3.320541 TGTTTCTCGGAACATTTTGGCAT 59.679 39.130 0.00 0.00 34.77 4.40
157 158 3.848272 TTCTCGGAACATTTTGGCATC 57.152 42.857 0.00 0.00 0.00 3.91
158 159 3.071874 TCTCGGAACATTTTGGCATCT 57.928 42.857 0.00 0.00 0.00 2.90
159 160 3.420893 TCTCGGAACATTTTGGCATCTT 58.579 40.909 0.00 0.00 0.00 2.40
160 161 4.584874 TCTCGGAACATTTTGGCATCTTA 58.415 39.130 0.00 0.00 0.00 2.10
161 162 5.192927 TCTCGGAACATTTTGGCATCTTAT 58.807 37.500 0.00 0.00 0.00 1.73
162 163 5.652014 TCTCGGAACATTTTGGCATCTTATT 59.348 36.000 0.00 0.00 0.00 1.40
163 164 6.152661 TCTCGGAACATTTTGGCATCTTATTT 59.847 34.615 0.00 0.00 0.00 1.40
164 165 6.098679 TCGGAACATTTTGGCATCTTATTTG 58.901 36.000 0.00 0.00 0.00 2.32
165 166 5.868801 CGGAACATTTTGGCATCTTATTTGT 59.131 36.000 0.00 0.00 0.00 2.83
166 167 7.032580 CGGAACATTTTGGCATCTTATTTGTA 58.967 34.615 0.00 0.00 0.00 2.41
167 168 7.706179 CGGAACATTTTGGCATCTTATTTGTAT 59.294 33.333 0.00 0.00 0.00 2.29
168 169 9.382275 GGAACATTTTGGCATCTTATTTGTATT 57.618 29.630 0.00 0.00 0.00 1.89
220 221 5.263185 AGTTTTCAAACTGACGATCAAACG 58.737 37.500 4.08 0.00 46.80 3.60
221 222 3.870723 TTCAAACTGACGATCAAACGG 57.129 42.857 0.00 0.00 37.61 4.44
222 223 2.828877 TCAAACTGACGATCAAACGGT 58.171 42.857 0.00 0.00 37.61 4.83
223 224 2.798283 TCAAACTGACGATCAAACGGTC 59.202 45.455 0.00 0.00 37.61 4.79
224 225 2.519377 AACTGACGATCAAACGGTCA 57.481 45.000 0.00 0.00 37.61 4.02
225 226 2.519377 ACTGACGATCAAACGGTCAA 57.481 45.000 0.00 0.00 37.61 3.18
226 227 2.828877 ACTGACGATCAAACGGTCAAA 58.171 42.857 0.00 0.00 37.61 2.69
227 228 2.800544 ACTGACGATCAAACGGTCAAAG 59.199 45.455 0.00 0.00 37.61 2.77
228 229 2.139917 TGACGATCAAACGGTCAAAGG 58.860 47.619 0.00 0.00 37.61 3.11
229 230 1.463444 GACGATCAAACGGTCAAAGGG 59.537 52.381 0.00 0.00 37.61 3.95
230 231 1.202722 ACGATCAAACGGTCAAAGGGT 60.203 47.619 0.00 0.00 37.61 4.34
231 232 2.037511 ACGATCAAACGGTCAAAGGGTA 59.962 45.455 0.00 0.00 37.61 3.69
232 233 3.068560 CGATCAAACGGTCAAAGGGTAA 58.931 45.455 0.00 0.00 0.00 2.85
233 234 3.499157 CGATCAAACGGTCAAAGGGTAAA 59.501 43.478 0.00 0.00 0.00 2.01
234 235 4.023878 CGATCAAACGGTCAAAGGGTAAAA 60.024 41.667 0.00 0.00 0.00 1.52
235 236 4.904253 TCAAACGGTCAAAGGGTAAAAG 57.096 40.909 0.00 0.00 0.00 2.27
236 237 3.067040 TCAAACGGTCAAAGGGTAAAAGC 59.933 43.478 0.00 0.00 0.00 3.51
237 238 2.351706 ACGGTCAAAGGGTAAAAGCA 57.648 45.000 0.00 0.00 0.00 3.91
238 239 1.951602 ACGGTCAAAGGGTAAAAGCAC 59.048 47.619 0.00 0.00 0.00 4.40
239 240 1.950909 CGGTCAAAGGGTAAAAGCACA 59.049 47.619 0.00 0.00 0.00 4.57
240 241 2.359531 CGGTCAAAGGGTAAAAGCACAA 59.640 45.455 0.00 0.00 0.00 3.33
241 242 3.550030 CGGTCAAAGGGTAAAAGCACAAG 60.550 47.826 0.00 0.00 0.00 3.16
242 243 3.634910 GGTCAAAGGGTAAAAGCACAAGA 59.365 43.478 0.00 0.00 0.00 3.02
243 244 4.499188 GGTCAAAGGGTAAAAGCACAAGAC 60.499 45.833 0.00 0.00 0.00 3.01
244 245 3.314080 TCAAAGGGTAAAAGCACAAGACG 59.686 43.478 0.00 0.00 0.00 4.18
245 246 2.922740 AGGGTAAAAGCACAAGACGA 57.077 45.000 0.00 0.00 0.00 4.20
246 247 2.490991 AGGGTAAAAGCACAAGACGAC 58.509 47.619 0.00 0.00 0.00 4.34
247 248 2.158871 AGGGTAAAAGCACAAGACGACA 60.159 45.455 0.00 0.00 0.00 4.35
248 249 2.614983 GGGTAAAAGCACAAGACGACAA 59.385 45.455 0.00 0.00 0.00 3.18
249 250 3.065648 GGGTAAAAGCACAAGACGACAAA 59.934 43.478 0.00 0.00 0.00 2.83
250 251 4.279659 GGTAAAAGCACAAGACGACAAAG 58.720 43.478 0.00 0.00 0.00 2.77
251 252 4.201881 GGTAAAAGCACAAGACGACAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
252 253 5.006941 GGTAAAAGCACAAGACGACAAAGTA 59.993 40.000 0.00 0.00 0.00 2.24
253 254 4.795970 AAAGCACAAGACGACAAAGTAG 57.204 40.909 0.00 0.00 0.00 2.57
254 255 2.755650 AGCACAAGACGACAAAGTAGG 58.244 47.619 0.00 0.00 0.00 3.18
255 256 2.102588 AGCACAAGACGACAAAGTAGGT 59.897 45.455 0.00 0.00 0.00 3.08
256 257 2.870411 GCACAAGACGACAAAGTAGGTT 59.130 45.455 0.00 0.00 0.00 3.50
257 258 3.303132 GCACAAGACGACAAAGTAGGTTG 60.303 47.826 0.00 0.00 34.52 3.77
258 259 3.247648 CACAAGACGACAAAGTAGGTTGG 59.752 47.826 0.00 0.00 32.50 3.77
259 260 2.806244 CAAGACGACAAAGTAGGTTGGG 59.194 50.000 0.00 0.00 32.50 4.12
260 261 1.154197 GACGACAAAGTAGGTTGGGC 58.846 55.000 0.00 0.00 32.50 5.36
261 262 0.470766 ACGACAAAGTAGGTTGGGCA 59.529 50.000 0.00 0.00 32.50 5.36
262 263 1.134037 ACGACAAAGTAGGTTGGGCAA 60.134 47.619 0.00 0.00 32.50 4.52
263 264 1.535462 CGACAAAGTAGGTTGGGCAAG 59.465 52.381 0.00 0.00 32.50 4.01
264 265 2.808933 CGACAAAGTAGGTTGGGCAAGA 60.809 50.000 0.00 0.00 32.50 3.02
265 266 2.552743 GACAAAGTAGGTTGGGCAAGAC 59.447 50.000 0.00 0.00 32.50 3.01
266 267 1.886542 CAAAGTAGGTTGGGCAAGACC 59.113 52.381 0.00 0.00 36.15 3.85
267 268 0.036306 AAGTAGGTTGGGCAAGACCG 59.964 55.000 0.00 0.00 40.89 4.79
268 269 2.038837 GTAGGTTGGGCAAGACCGC 61.039 63.158 0.00 0.00 40.89 5.68
269 270 3.599285 TAGGTTGGGCAAGACCGCG 62.599 63.158 0.00 0.00 40.89 6.46
271 272 4.025401 GTTGGGCAAGACCGCGTG 62.025 66.667 4.92 0.00 40.62 5.34
275 276 3.660111 GGCAAGACCGCGTGCTTT 61.660 61.111 17.40 0.00 46.69 3.51
276 277 2.127232 GCAAGACCGCGTGCTTTC 60.127 61.111 11.71 2.55 44.57 2.62
277 278 2.892334 GCAAGACCGCGTGCTTTCA 61.892 57.895 11.71 0.00 44.57 2.69
278 279 1.646540 CAAGACCGCGTGCTTTCAA 59.353 52.632 4.92 0.00 0.00 2.69
279 280 0.028770 CAAGACCGCGTGCTTTCAAA 59.971 50.000 4.92 0.00 0.00 2.69
280 281 0.736053 AAGACCGCGTGCTTTCAAAA 59.264 45.000 4.92 0.00 0.00 2.44
281 282 0.736053 AGACCGCGTGCTTTCAAAAA 59.264 45.000 4.92 0.00 0.00 1.94
282 283 0.843872 GACCGCGTGCTTTCAAAAAC 59.156 50.000 4.92 0.00 0.00 2.43
283 284 0.454196 ACCGCGTGCTTTCAAAAACT 59.546 45.000 4.92 0.00 0.00 2.66
284 285 1.671845 ACCGCGTGCTTTCAAAAACTA 59.328 42.857 4.92 0.00 0.00 2.24
285 286 2.286772 ACCGCGTGCTTTCAAAAACTAG 60.287 45.455 4.92 0.00 0.00 2.57
286 287 2.307049 CGCGTGCTTTCAAAAACTAGG 58.693 47.619 0.00 0.00 0.00 3.02
287 288 2.661594 GCGTGCTTTCAAAAACTAGGG 58.338 47.619 0.00 0.00 0.00 3.53
288 289 2.607038 GCGTGCTTTCAAAAACTAGGGG 60.607 50.000 0.00 0.00 0.00 4.79
289 290 2.607038 CGTGCTTTCAAAAACTAGGGGC 60.607 50.000 0.00 0.00 0.00 5.80
290 291 2.364002 GTGCTTTCAAAAACTAGGGGCA 59.636 45.455 0.00 0.00 0.00 5.36
291 292 3.006859 GTGCTTTCAAAAACTAGGGGCAT 59.993 43.478 0.00 0.00 0.00 4.40
292 293 4.219725 GTGCTTTCAAAAACTAGGGGCATA 59.780 41.667 0.00 0.00 0.00 3.14
293 294 5.022787 TGCTTTCAAAAACTAGGGGCATAT 58.977 37.500 0.00 0.00 0.00 1.78
294 295 5.127031 TGCTTTCAAAAACTAGGGGCATATC 59.873 40.000 0.00 0.00 0.00 1.63
295 296 5.733373 GCTTTCAAAAACTAGGGGCATATCG 60.733 44.000 0.00 0.00 0.00 2.92
296 297 4.764050 TCAAAAACTAGGGGCATATCGA 57.236 40.909 0.00 0.00 0.00 3.59
297 298 5.304686 TCAAAAACTAGGGGCATATCGAT 57.695 39.130 2.16 2.16 0.00 3.59
298 299 5.690865 TCAAAAACTAGGGGCATATCGATT 58.309 37.500 1.71 0.00 0.00 3.34
299 300 5.530915 TCAAAAACTAGGGGCATATCGATTG 59.469 40.000 1.71 3.19 0.00 2.67
300 301 4.974645 AAACTAGGGGCATATCGATTGA 57.025 40.909 1.71 0.00 0.00 2.57
301 302 4.543590 AACTAGGGGCATATCGATTGAG 57.456 45.455 1.71 0.00 0.00 3.02
302 303 2.834549 ACTAGGGGCATATCGATTGAGG 59.165 50.000 1.71 0.00 0.00 3.86
303 304 0.987294 AGGGGCATATCGATTGAGGG 59.013 55.000 1.71 0.00 0.00 4.30
304 305 0.035056 GGGGCATATCGATTGAGGGG 60.035 60.000 1.71 0.00 0.00 4.79
305 306 0.035056 GGGCATATCGATTGAGGGGG 60.035 60.000 1.71 0.00 0.00 5.40
306 307 0.984230 GGCATATCGATTGAGGGGGA 59.016 55.000 1.71 0.00 0.00 4.81
307 308 1.339151 GGCATATCGATTGAGGGGGAC 60.339 57.143 1.71 0.00 0.00 4.46
308 309 1.347707 GCATATCGATTGAGGGGGACA 59.652 52.381 1.71 0.00 0.00 4.02
309 310 2.026822 GCATATCGATTGAGGGGGACAT 60.027 50.000 1.71 0.00 0.00 3.06
310 311 3.197766 GCATATCGATTGAGGGGGACATA 59.802 47.826 1.71 0.00 0.00 2.29
311 312 4.323485 GCATATCGATTGAGGGGGACATAA 60.323 45.833 1.71 0.00 0.00 1.90
312 313 3.771577 ATCGATTGAGGGGGACATAAC 57.228 47.619 0.00 0.00 0.00 1.89
313 314 2.759355 TCGATTGAGGGGGACATAACT 58.241 47.619 0.00 0.00 0.00 2.24
314 315 3.918566 TCGATTGAGGGGGACATAACTA 58.081 45.455 0.00 0.00 0.00 2.24
315 316 3.640029 TCGATTGAGGGGGACATAACTAC 59.360 47.826 0.00 0.00 0.00 2.73
316 317 3.552273 CGATTGAGGGGGACATAACTACG 60.552 52.174 0.00 0.00 0.00 3.51
317 318 1.784358 TGAGGGGGACATAACTACGG 58.216 55.000 0.00 0.00 0.00 4.02
318 319 1.046204 GAGGGGGACATAACTACGGG 58.954 60.000 0.00 0.00 0.00 5.28
319 320 0.340908 AGGGGGACATAACTACGGGT 59.659 55.000 0.00 0.00 0.00 5.28
320 321 1.575304 AGGGGGACATAACTACGGGTA 59.425 52.381 0.00 0.00 0.00 3.69
321 322 2.180751 AGGGGGACATAACTACGGGTAT 59.819 50.000 0.00 0.00 0.00 2.73
322 323 2.301009 GGGGGACATAACTACGGGTATG 59.699 54.545 0.21 0.21 0.00 2.39
323 324 3.233507 GGGGACATAACTACGGGTATGA 58.766 50.000 7.88 0.00 0.00 2.15
324 325 3.642848 GGGGACATAACTACGGGTATGAA 59.357 47.826 7.88 0.00 0.00 2.57
325 326 4.285260 GGGGACATAACTACGGGTATGAAT 59.715 45.833 7.88 0.00 0.00 2.57
326 327 5.481473 GGGGACATAACTACGGGTATGAATA 59.519 44.000 7.88 0.00 0.00 1.75
327 328 6.393171 GGGACATAACTACGGGTATGAATAC 58.607 44.000 7.88 0.00 0.00 1.89
328 329 6.015180 GGGACATAACTACGGGTATGAATACA 60.015 42.308 7.88 0.00 34.98 2.29
329 330 7.436118 GGACATAACTACGGGTATGAATACAA 58.564 38.462 7.88 0.00 34.98 2.41
330 331 8.092687 GGACATAACTACGGGTATGAATACAAT 58.907 37.037 7.88 0.00 34.98 2.71
331 332 9.485206 GACATAACTACGGGTATGAATACAATT 57.515 33.333 7.88 0.00 34.98 2.32
336 337 7.618137 ACTACGGGTATGAATACAATTATCCC 58.382 38.462 3.04 0.00 34.98 3.85
337 338 6.697641 ACGGGTATGAATACAATTATCCCT 57.302 37.500 3.04 0.00 34.98 4.20
338 339 7.801893 ACGGGTATGAATACAATTATCCCTA 57.198 36.000 3.04 0.00 34.98 3.53
339 340 8.209802 ACGGGTATGAATACAATTATCCCTAA 57.790 34.615 3.04 0.00 34.98 2.69
340 341 8.662255 ACGGGTATGAATACAATTATCCCTAAA 58.338 33.333 3.04 0.00 34.98 1.85
341 342 9.681062 CGGGTATGAATACAATTATCCCTAAAT 57.319 33.333 3.04 0.00 34.98 1.40
467 470 9.366216 ACACTTTTAAAGACTGGTCAAAATTTC 57.634 29.630 12.02 0.00 0.00 2.17
631 656 4.553330 TTCCATGAACCACTACTCTTCC 57.447 45.455 0.00 0.00 0.00 3.46
632 657 3.516586 TCCATGAACCACTACTCTTCCA 58.483 45.455 0.00 0.00 0.00 3.53
634 659 4.536090 TCCATGAACCACTACTCTTCCATT 59.464 41.667 0.00 0.00 0.00 3.16
638 663 7.419518 CCATGAACCACTACTCTTCCATTAGAT 60.420 40.741 0.00 0.00 0.00 1.98
655 680 8.206867 TCCATTAGATGAAGAACACTAAGATGG 58.793 37.037 0.00 0.00 32.10 3.51
665 690 6.899114 AGAACACTAAGATGGCTTTTTAACG 58.101 36.000 0.00 0.00 35.56 3.18
668 693 5.761234 ACACTAAGATGGCTTTTTAACGTCA 59.239 36.000 0.00 0.00 35.56 4.35
681 706 9.016623 GCTTTTTAACGTCAAAACTTCATACTT 57.983 29.630 0.00 0.00 0.00 2.24
780 805 8.017373 ACACATGAATCAGATTTTACGAGTTTG 58.983 33.333 0.00 0.00 0.00 2.93
786 811 8.746922 AATCAGATTTTACGAGTTTGTACGTA 57.253 30.769 0.00 0.00 42.61 3.57
790 815 7.268235 CAGATTTTACGAGTTTGTACGTACGTA 59.732 37.037 23.60 23.60 43.02 3.57
791 816 7.801315 AGATTTTACGAGTTTGTACGTACGTAA 59.199 33.333 28.34 18.58 43.02 3.18
796 821 4.436200 CGAGTTTGTACGTACGTAACAACA 59.564 41.667 32.11 25.64 31.96 3.33
806 831 4.433674 CGTACGTAACAACACATGGACATG 60.434 45.833 7.22 10.57 44.15 3.21
918 954 1.750399 CAGCCGGAATGGGGAACAG 60.750 63.158 5.05 0.00 38.63 3.16
939 975 3.660111 GCGCACCACACAAGACCC 61.660 66.667 0.30 0.00 0.00 4.46
1055 1091 1.992277 CCTCCTCCACCTCCACCTG 60.992 68.421 0.00 0.00 0.00 4.00
1062 1098 3.314331 ACCTCCACCTGCACCTCG 61.314 66.667 0.00 0.00 0.00 4.63
1365 1412 5.483811 TCAGTTTATCGTTGCTGGTCATTA 58.516 37.500 0.00 0.00 0.00 1.90
1411 1458 6.378582 TCTCACGAACTTAAATTGGCATTTC 58.621 36.000 0.00 0.00 34.29 2.17
1496 1544 2.223994 GGAGCTTGACCGTATCTTACCC 60.224 54.545 0.00 0.00 0.00 3.69
1535 1833 6.388689 TCCCTCAGTTCCTAAATAATAAGCCA 59.611 38.462 0.00 0.00 0.00 4.75
1557 1855 7.012421 AGCCATTTTAGAGATTCCAATACGAAC 59.988 37.037 0.00 0.00 0.00 3.95
1558 1856 7.012421 GCCATTTTAGAGATTCCAATACGAACT 59.988 37.037 0.00 0.00 0.00 3.01
1559 1857 9.542462 CCATTTTAGAGATTCCAATACGAACTA 57.458 33.333 0.00 0.00 0.00 2.24
1565 1863 7.361127 AGAGATTCCAATACGAACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
1566 1864 7.013083 AGAGATTCCAATACGAACTACATACGT 59.987 37.037 0.00 0.00 42.70 3.57
1567 1865 8.158169 AGATTCCAATACGAACTACATACGTA 57.842 34.615 0.00 0.00 44.32 3.57
1568 1866 8.623903 AGATTCCAATACGAACTACATACGTAA 58.376 33.333 0.00 0.00 43.65 3.18
1569 1867 9.403110 GATTCCAATACGAACTACATACGTAAT 57.597 33.333 0.00 0.00 43.65 1.89
1578 1876 9.793252 ACGAACTACATACGTAATAAAATGAGT 57.207 29.630 0.00 0.00 38.47 3.41
1697 2310 8.489990 TGTTGCATAAATGTTTCCATATTTGG 57.510 30.769 0.00 0.00 45.15 3.28
1716 2329 2.164338 GGGGCGTTATTTTTCTGTGGA 58.836 47.619 0.00 0.00 0.00 4.02
1722 2335 4.334443 CGTTATTTTTCTGTGGATGCGAG 58.666 43.478 0.00 0.00 0.00 5.03
1768 2381 8.251750 TCTTGGTTCAGACGAAAAATATACTG 57.748 34.615 0.00 0.00 31.43 2.74
1822 2435 2.377073 ACCTAGGAGTTCTTCTACGGC 58.623 52.381 17.98 0.00 30.93 5.68
2052 2666 1.265635 CGAACATTCCTTTCACGCCAA 59.734 47.619 0.00 0.00 0.00 4.52
2053 2667 2.095263 CGAACATTCCTTTCACGCCAAT 60.095 45.455 0.00 0.00 0.00 3.16
2055 2669 3.575965 ACATTCCTTTCACGCCAATTC 57.424 42.857 0.00 0.00 0.00 2.17
2056 2670 3.157087 ACATTCCTTTCACGCCAATTCT 58.843 40.909 0.00 0.00 0.00 2.40
2057 2671 3.057315 ACATTCCTTTCACGCCAATTCTG 60.057 43.478 0.00 0.00 0.00 3.02
2059 2673 0.597568 CCTTTCACGCCAATTCTGCA 59.402 50.000 0.00 0.00 0.00 4.41
2060 2674 1.401931 CCTTTCACGCCAATTCTGCAG 60.402 52.381 7.63 7.63 0.00 4.41
2062 2676 0.874390 TTCACGCCAATTCTGCAGAC 59.126 50.000 18.03 3.24 0.00 3.51
2063 2677 0.035317 TCACGCCAATTCTGCAGACT 59.965 50.000 18.03 8.67 0.00 3.24
2160 3369 2.111999 TTTCACTGTCCCCTCAGGCG 62.112 60.000 0.00 0.00 39.48 5.52
2181 3390 1.376037 GCCTCCCAGTTTCCACTCG 60.376 63.158 0.00 0.00 0.00 4.18
2239 3448 2.294512 CCCAGTTGCTCTTTCCTTTGTC 59.705 50.000 0.00 0.00 0.00 3.18
2272 3481 6.245890 TGGTTGGTCCAGATTTTTCAATTT 57.754 33.333 0.00 0.00 41.93 1.82
2276 3485 6.345096 TGGTCCAGATTTTTCAATTTCTCC 57.655 37.500 0.00 0.00 0.00 3.71
2305 3514 0.762418 ACCAGAAACATCACGGACCA 59.238 50.000 0.00 0.00 0.00 4.02
2324 3533 3.517901 ACCACGATACTGATTCTTTCCCA 59.482 43.478 0.00 0.00 0.00 4.37
2368 3578 1.004044 AGGAACCAAGCTCTCCACATG 59.996 52.381 6.82 0.00 0.00 3.21
2369 3579 1.003580 GGAACCAAGCTCTCCACATGA 59.996 52.381 0.00 0.00 0.00 3.07
2371 3581 2.191128 ACCAAGCTCTCCACATGAAC 57.809 50.000 0.00 0.00 0.00 3.18
2373 3583 2.158623 ACCAAGCTCTCCACATGAACAA 60.159 45.455 0.00 0.00 0.00 2.83
2374 3584 3.087031 CCAAGCTCTCCACATGAACAAT 58.913 45.455 0.00 0.00 0.00 2.71
2375 3585 4.263462 ACCAAGCTCTCCACATGAACAATA 60.263 41.667 0.00 0.00 0.00 1.90
2376 3586 4.095483 CCAAGCTCTCCACATGAACAATAC 59.905 45.833 0.00 0.00 0.00 1.89
2404 4396 9.842775 ATTCTGATTCTTGTCTCTGCATTATTA 57.157 29.630 0.00 0.00 0.00 0.98
2429 4421 2.489329 TCAAGCAGAATTTGTAGCCAGC 59.511 45.455 0.00 0.00 0.00 4.85
2436 4428 3.264450 AGAATTTGTAGCCAGCCTGTACT 59.736 43.478 0.00 0.00 0.00 2.73
2554 4546 1.688735 TCATCCTCAGCTCCATTACCG 59.311 52.381 0.00 0.00 0.00 4.02
2578 4570 3.754850 AGATGTCACACACATTGTCATGG 59.245 43.478 0.00 0.00 46.53 3.66
2659 4651 5.430007 CAGCCAAAGATCTTGATTCTCTCT 58.570 41.667 9.17 0.00 0.00 3.10
2660 4652 5.294799 CAGCCAAAGATCTTGATTCTCTCTG 59.705 44.000 9.17 0.00 0.00 3.35
2661 4653 4.575645 GCCAAAGATCTTGATTCTCTCTGG 59.424 45.833 9.17 10.40 0.00 3.86
2662 4654 5.124645 CCAAAGATCTTGATTCTCTCTGGG 58.875 45.833 9.17 0.00 0.00 4.45
2663 4655 5.104610 CCAAAGATCTTGATTCTCTCTGGGA 60.105 44.000 9.17 0.00 0.00 4.37
2664 4656 6.409464 CCAAAGATCTTGATTCTCTCTGGGAT 60.409 42.308 9.17 0.00 0.00 3.85
2665 4657 6.423776 AAGATCTTGATTCTCTCTGGGATC 57.576 41.667 7.30 0.00 0.00 3.36
2675 4667 0.905357 CTCTGGGATCTGGGACGTTT 59.095 55.000 0.00 0.00 0.00 3.60
2689 4681 7.287061 TCTGGGACGTTTATTTTCCATATGAT 58.713 34.615 3.65 0.00 0.00 2.45
2695 4687 6.264518 ACGTTTATTTTCCATATGATGTCCCC 59.735 38.462 3.65 0.00 0.00 4.81
2696 4688 6.264292 CGTTTATTTTCCATATGATGTCCCCA 59.736 38.462 3.65 0.00 0.00 4.96
2697 4689 7.039784 CGTTTATTTTCCATATGATGTCCCCAT 60.040 37.037 3.65 0.00 0.00 4.00
2698 4690 9.308000 GTTTATTTTCCATATGATGTCCCCATA 57.692 33.333 3.65 0.00 0.00 2.74
2701 4693 5.715439 TTCCATATGATGTCCCCATATCC 57.285 43.478 3.65 0.00 35.64 2.59
2702 4694 4.047166 TCCATATGATGTCCCCATATCCC 58.953 47.826 3.65 0.00 35.64 3.85
2732 4724 0.669318 GCGTCATTGTGGGAGTTCGA 60.669 55.000 0.00 0.00 0.00 3.71
2786 4778 5.413499 AGCAGCTAATTTTTATGGTTGCTG 58.587 37.500 0.00 0.00 46.28 4.41
2837 4829 6.547510 AGCCAACTCTAGTTCATTTTTCTTGT 59.452 34.615 0.00 0.00 35.83 3.16
2847 4839 6.762661 AGTTCATTTTTCTTGTCAATGTTGGG 59.237 34.615 0.00 0.00 31.08 4.12
3060 5052 3.058639 CCTTCTCACGCCTCTTTTGAAAG 60.059 47.826 0.00 0.00 37.36 2.62
3099 5091 5.240623 TCATTCAATGTTTGGCGTTCTAACT 59.759 36.000 0.00 0.00 33.36 2.24
3336 5329 4.268884 GTCTCAAATTGCCTAGAGCTTACG 59.731 45.833 0.00 0.00 44.23 3.18
3404 5412 7.005296 AGTGTCTCTCTTCCTTAGTCTTTGTA 58.995 38.462 0.00 0.00 0.00 2.41
3419 5427 3.650942 TCTTTGTACTGGAGTCCATGGTT 59.349 43.478 13.56 0.82 30.82 3.67
3434 5442 3.384467 CCATGGTTGTTTTGAGAACACCT 59.616 43.478 2.57 0.00 0.00 4.00
3697 5708 6.821388 ACATATGTTCTTATGGAGTGAGGAC 58.179 40.000 1.41 0.00 34.50 3.85
3785 5796 4.718961 AGGTCCTACATAATGGTTGCATC 58.281 43.478 0.00 0.00 0.00 3.91
3892 5903 6.508088 CGTTACGGATATTCTTTGCAGTTCTC 60.508 42.308 0.00 0.00 0.00 2.87
4009 6020 5.998363 GTGAATAAGCCCTAGGAATGGTTAG 59.002 44.000 11.48 0.00 0.00 2.34
4010 6021 5.670361 TGAATAAGCCCTAGGAATGGTTAGT 59.330 40.000 11.48 9.13 0.00 2.24
4127 6138 7.484324 TCGCATGTATTCAAATGTAACATTGTG 59.516 33.333 0.00 0.00 0.00 3.33
4135 6146 5.237561 TCAAATGTAACATTGTGTGTAGCGT 59.762 36.000 0.00 0.00 41.14 5.07
4251 6522 8.625786 AGTGCAAATTATATGATATCACAGCA 57.374 30.769 7.78 6.81 0.00 4.41
4277 6548 4.060205 GCTAAAGTTAAACGTGTCTCCCA 58.940 43.478 0.00 0.00 0.00 4.37
4284 6555 2.851263 AACGTGTCTCCCATTTGCTA 57.149 45.000 0.00 0.00 0.00 3.49
4366 6659 1.024271 GTCAAGTTTCAGTGGCTGCA 58.976 50.000 0.50 0.00 0.00 4.41
4370 6663 0.395586 AGTTTCAGTGGCTGCAACCA 60.396 50.000 4.25 4.25 38.11 3.67
4425 6718 6.787085 ATTATTCCTACAACGAATGCTAGC 57.213 37.500 8.10 8.10 32.32 3.42
4426 6719 2.596904 TCCTACAACGAATGCTAGCC 57.403 50.000 13.29 0.00 0.00 3.93
4429 6722 2.545952 CCTACAACGAATGCTAGCCGAT 60.546 50.000 17.08 4.07 0.00 4.18
4480 6773 2.835764 TCTAACCGTCTTGGCCTAACAT 59.164 45.455 3.32 0.00 43.94 2.71
4481 6774 2.579410 AACCGTCTTGGCCTAACATT 57.421 45.000 3.32 0.00 43.94 2.71
4521 6818 7.348080 TCTGCTCTAGCTATGCTAAGTTTTA 57.652 36.000 16.43 0.00 40.82 1.52
4593 7006 2.959275 CGATGTCGTCCCAGCTTAC 58.041 57.895 0.00 0.00 34.11 2.34
4594 7007 0.866061 CGATGTCGTCCCAGCTTACG 60.866 60.000 6.67 6.67 40.40 3.18
4595 7008 0.527817 GATGTCGTCCCAGCTTACGG 60.528 60.000 11.78 0.00 39.52 4.02
4596 7009 2.508663 GTCGTCCCAGCTTACGGC 60.509 66.667 11.78 7.38 39.52 5.68
4621 7034 3.530535 GTGCAAAAGGGTCAAATTGTGT 58.469 40.909 0.00 0.00 0.00 3.72
4623 7036 5.296748 GTGCAAAAGGGTCAAATTGTGTAT 58.703 37.500 0.00 0.00 0.00 2.29
4625 7038 6.926272 GTGCAAAAGGGTCAAATTGTGTATAA 59.074 34.615 0.00 0.00 0.00 0.98
4652 7065 5.924356 TCAGATTCGGTCCATTTTATGCTA 58.076 37.500 0.00 0.00 0.00 3.49
4660 7073 8.338072 TCGGTCCATTTTATGCTAAAGTTTTA 57.662 30.769 0.00 0.00 0.00 1.52
4661 7074 8.455682 TCGGTCCATTTTATGCTAAAGTTTTAG 58.544 33.333 7.17 7.17 42.30 1.85
4692 7107 5.858581 GTCAAATATGTCCTTTTCACAGTGC 59.141 40.000 0.00 0.00 0.00 4.40
4791 7232 6.244552 TCTTTTCTCTGAGCCATCATATGT 57.755 37.500 1.90 0.00 34.12 2.29
4800 7241 3.273434 AGCCATCATATGTGTGTGTGTC 58.727 45.455 1.90 0.00 0.00 3.67
4801 7242 2.030823 GCCATCATATGTGTGTGTGTCG 59.969 50.000 1.90 0.00 0.00 4.35
4803 7244 3.684305 CCATCATATGTGTGTGTGTCGTT 59.316 43.478 1.90 0.00 0.00 3.85
4804 7245 4.201714 CCATCATATGTGTGTGTGTCGTTC 60.202 45.833 1.90 0.00 0.00 3.95
4805 7246 4.251543 TCATATGTGTGTGTGTCGTTCT 57.748 40.909 1.90 0.00 0.00 3.01
4806 7247 3.987220 TCATATGTGTGTGTGTCGTTCTG 59.013 43.478 1.90 0.00 0.00 3.02
4808 7249 2.087501 TGTGTGTGTGTCGTTCTGTT 57.912 45.000 0.00 0.00 0.00 3.16
4809 7250 1.729517 TGTGTGTGTGTCGTTCTGTTG 59.270 47.619 0.00 0.00 0.00 3.33
4811 7252 2.413796 GTGTGTGTGTCGTTCTGTTGAA 59.586 45.455 0.00 0.00 0.00 2.69
4823 7264 1.417517 TCTGTTGAAAGGCTGAGAGCA 59.582 47.619 0.00 0.00 44.75 4.26
4826 7267 2.157738 GTTGAAAGGCTGAGAGCATGT 58.842 47.619 0.00 0.00 44.75 3.21
4829 7270 2.008329 GAAAGGCTGAGAGCATGTCTG 58.992 52.381 0.00 0.00 44.75 3.51
4846 7287 0.803117 CTGCTCTGATTGGTGTGCAG 59.197 55.000 0.00 0.00 41.91 4.41
4864 7305 3.818210 TGCAGACGTTGTGGAAATTGTAT 59.182 39.130 0.00 0.00 0.00 2.29
4884 7325 7.675161 TGTATAGAGGTCCAATCATTCTTGA 57.325 36.000 0.00 0.00 36.00 3.02
4888 7329 5.682659 AGAGGTCCAATCATTCTTGAGATG 58.317 41.667 0.00 0.00 34.73 2.90
4933 7374 5.990120 AGCTGAAACCTAAAGCATTGAAT 57.010 34.783 0.00 0.00 39.47 2.57
4938 7379 4.725790 AACCTAAAGCATTGAATCTGCC 57.274 40.909 0.00 0.00 40.56 4.85
4939 7380 3.973425 ACCTAAAGCATTGAATCTGCCT 58.027 40.909 0.00 0.00 40.56 4.75
4940 7381 4.347607 ACCTAAAGCATTGAATCTGCCTT 58.652 39.130 0.00 0.00 40.56 4.35
4941 7382 4.774200 ACCTAAAGCATTGAATCTGCCTTT 59.226 37.500 0.00 0.00 40.56 3.11
4942 7383 5.105595 ACCTAAAGCATTGAATCTGCCTTTC 60.106 40.000 0.00 0.00 40.56 2.62
4943 7384 4.877378 AAAGCATTGAATCTGCCTTTCA 57.123 36.364 0.00 0.00 40.56 2.69
4944 7385 5.416271 AAAGCATTGAATCTGCCTTTCAT 57.584 34.783 0.00 0.00 40.56 2.57
4945 7386 4.386867 AGCATTGAATCTGCCTTTCATG 57.613 40.909 0.00 0.00 40.56 3.07
4946 7387 3.767673 AGCATTGAATCTGCCTTTCATGT 59.232 39.130 0.00 0.00 40.56 3.21
4947 7388 4.110482 GCATTGAATCTGCCTTTCATGTC 58.890 43.478 0.00 0.00 33.37 3.06
4948 7389 4.348656 CATTGAATCTGCCTTTCATGTCG 58.651 43.478 0.00 0.00 33.37 4.35
4949 7390 3.333029 TGAATCTGCCTTTCATGTCGA 57.667 42.857 0.00 0.00 0.00 4.20
4950 7391 3.264947 TGAATCTGCCTTTCATGTCGAG 58.735 45.455 0.00 0.00 0.00 4.04
4951 7392 3.055891 TGAATCTGCCTTTCATGTCGAGA 60.056 43.478 0.00 0.00 0.00 4.04
4952 7393 3.616956 ATCTGCCTTTCATGTCGAGAA 57.383 42.857 0.00 0.00 0.00 2.87
4953 7394 3.616956 TCTGCCTTTCATGTCGAGAAT 57.383 42.857 0.00 0.00 0.00 2.40
4954 7395 4.736126 TCTGCCTTTCATGTCGAGAATA 57.264 40.909 0.00 0.00 0.00 1.75
4955 7396 4.433615 TCTGCCTTTCATGTCGAGAATAC 58.566 43.478 0.00 0.00 0.00 1.89
4956 7397 3.186909 TGCCTTTCATGTCGAGAATACG 58.813 45.455 0.00 0.00 0.00 3.06
4957 7398 2.540101 GCCTTTCATGTCGAGAATACGG 59.460 50.000 0.00 0.00 0.00 4.02
4958 7399 3.782046 CCTTTCATGTCGAGAATACGGT 58.218 45.455 0.00 0.00 0.00 4.83
4959 7400 3.551890 CCTTTCATGTCGAGAATACGGTG 59.448 47.826 0.00 0.00 0.00 4.94
4960 7401 2.863401 TCATGTCGAGAATACGGTGG 57.137 50.000 0.00 0.00 0.00 4.61
4961 7402 1.202371 TCATGTCGAGAATACGGTGGC 60.202 52.381 0.00 0.00 0.00 5.01
4962 7403 1.112113 ATGTCGAGAATACGGTGGCT 58.888 50.000 0.00 0.00 0.00 4.75
4963 7404 0.454600 TGTCGAGAATACGGTGGCTC 59.545 55.000 0.00 0.00 0.00 4.70
4964 7405 0.248949 GTCGAGAATACGGTGGCTCC 60.249 60.000 0.00 0.00 0.00 4.70
4965 7406 0.395311 TCGAGAATACGGTGGCTCCT 60.395 55.000 3.83 0.00 0.00 3.69
4966 7407 0.249073 CGAGAATACGGTGGCTCCTG 60.249 60.000 3.83 0.33 0.00 3.86
4967 7408 0.530870 GAGAATACGGTGGCTCCTGC 60.531 60.000 3.83 0.00 38.76 4.85
4977 7418 4.600576 GCTCCTGCCCTAGCGCTC 62.601 72.222 16.34 0.00 44.31 5.03
4978 7419 3.922640 CTCCTGCCCTAGCGCTCC 61.923 72.222 16.34 1.13 44.31 4.70
4981 7422 4.232878 CTGCCCTAGCGCTCCCTG 62.233 72.222 16.34 1.89 44.31 4.45
4984 7425 3.922640 CCCTAGCGCTCCCTGCTC 61.923 72.222 16.34 0.00 42.85 4.26
4985 7426 3.922640 CCTAGCGCTCCCTGCTCC 61.923 72.222 16.34 0.00 42.85 4.70
4986 7427 3.922640 CTAGCGCTCCCTGCTCCC 61.923 72.222 16.34 0.00 42.85 4.30
4987 7428 4.777854 TAGCGCTCCCTGCTCCCA 62.778 66.667 16.34 0.00 42.85 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.866655 ATCATACCACCATGAACAGTAAAATAT 57.133 29.630 0.00 0.00 38.39 1.28
37 38 9.693739 TTATCATACCACCATGAACAGTAAAAT 57.306 29.630 0.00 0.00 38.39 1.82
38 39 9.173021 CTTATCATACCACCATGAACAGTAAAA 57.827 33.333 0.00 0.00 38.39 1.52
39 40 8.544622 TCTTATCATACCACCATGAACAGTAAA 58.455 33.333 0.00 0.00 38.39 2.01
40 41 8.084985 TCTTATCATACCACCATGAACAGTAA 57.915 34.615 0.00 0.00 38.39 2.24
41 42 7.669089 TCTTATCATACCACCATGAACAGTA 57.331 36.000 0.00 0.00 38.39 2.74
42 43 6.560003 TCTTATCATACCACCATGAACAGT 57.440 37.500 0.00 0.00 38.39 3.55
43 44 5.468072 GCTCTTATCATACCACCATGAACAG 59.532 44.000 0.00 0.00 38.39 3.16
44 45 5.130975 AGCTCTTATCATACCACCATGAACA 59.869 40.000 0.00 0.00 38.39 3.18
45 46 5.615289 AGCTCTTATCATACCACCATGAAC 58.385 41.667 0.00 0.00 38.39 3.18
46 47 5.894298 AGCTCTTATCATACCACCATGAA 57.106 39.130 0.00 0.00 38.39 2.57
47 48 6.994421 TTAGCTCTTATCATACCACCATGA 57.006 37.500 0.00 0.00 39.20 3.07
48 49 7.716998 AGTTTTAGCTCTTATCATACCACCATG 59.283 37.037 0.00 0.00 0.00 3.66
49 50 7.806180 AGTTTTAGCTCTTATCATACCACCAT 58.194 34.615 0.00 0.00 0.00 3.55
50 51 7.195374 AGTTTTAGCTCTTATCATACCACCA 57.805 36.000 0.00 0.00 0.00 4.17
51 52 6.421202 CGAGTTTTAGCTCTTATCATACCACC 59.579 42.308 0.00 0.00 33.55 4.61
52 53 7.201145 TCGAGTTTTAGCTCTTATCATACCAC 58.799 38.462 0.00 0.00 33.55 4.16
53 54 7.342769 TCGAGTTTTAGCTCTTATCATACCA 57.657 36.000 0.00 0.00 33.55 3.25
54 55 8.704234 CATTCGAGTTTTAGCTCTTATCATACC 58.296 37.037 0.00 0.00 33.55 2.73
55 56 9.250624 ACATTCGAGTTTTAGCTCTTATCATAC 57.749 33.333 0.00 0.00 33.55 2.39
56 57 9.464714 GACATTCGAGTTTTAGCTCTTATCATA 57.535 33.333 0.00 0.00 33.55 2.15
57 58 7.439655 GGACATTCGAGTTTTAGCTCTTATCAT 59.560 37.037 0.00 0.00 33.55 2.45
58 59 6.757010 GGACATTCGAGTTTTAGCTCTTATCA 59.243 38.462 0.00 0.00 33.55 2.15
59 60 6.757010 TGGACATTCGAGTTTTAGCTCTTATC 59.243 38.462 0.00 0.00 33.55 1.75
60 61 6.535508 GTGGACATTCGAGTTTTAGCTCTTAT 59.464 38.462 0.00 0.00 33.55 1.73
61 62 5.867716 GTGGACATTCGAGTTTTAGCTCTTA 59.132 40.000 0.00 0.00 33.55 2.10
62 63 4.691216 GTGGACATTCGAGTTTTAGCTCTT 59.309 41.667 0.00 0.00 33.55 2.85
63 64 4.021016 AGTGGACATTCGAGTTTTAGCTCT 60.021 41.667 0.00 0.00 33.55 4.09
64 65 4.246458 AGTGGACATTCGAGTTTTAGCTC 58.754 43.478 0.00 0.00 0.00 4.09
65 66 4.273148 AGTGGACATTCGAGTTTTAGCT 57.727 40.909 0.00 0.00 0.00 3.32
66 67 5.163884 GGTAAGTGGACATTCGAGTTTTAGC 60.164 44.000 0.00 0.00 0.00 3.09
67 68 5.929992 TGGTAAGTGGACATTCGAGTTTTAG 59.070 40.000 0.00 0.00 0.00 1.85
68 69 5.856156 TGGTAAGTGGACATTCGAGTTTTA 58.144 37.500 0.00 0.00 0.00 1.52
69 70 4.710324 TGGTAAGTGGACATTCGAGTTTT 58.290 39.130 0.00 0.00 0.00 2.43
70 71 4.345859 TGGTAAGTGGACATTCGAGTTT 57.654 40.909 0.00 0.00 0.00 2.66
71 72 4.062991 GTTGGTAAGTGGACATTCGAGTT 58.937 43.478 0.00 0.00 0.00 3.01
72 73 3.070446 TGTTGGTAAGTGGACATTCGAGT 59.930 43.478 0.00 0.00 0.00 4.18
73 74 3.432252 GTGTTGGTAAGTGGACATTCGAG 59.568 47.826 0.00 0.00 0.00 4.04
74 75 3.070446 AGTGTTGGTAAGTGGACATTCGA 59.930 43.478 0.00 0.00 0.00 3.71
75 76 3.399330 AGTGTTGGTAAGTGGACATTCG 58.601 45.455 0.00 0.00 0.00 3.34
76 77 5.767816 AAAGTGTTGGTAAGTGGACATTC 57.232 39.130 0.00 0.00 0.00 2.67
77 78 5.420739 ACAAAAGTGTTGGTAAGTGGACATT 59.579 36.000 0.00 0.00 32.58 2.71
78 79 4.953579 ACAAAAGTGTTGGTAAGTGGACAT 59.046 37.500 0.00 0.00 32.58 3.06
79 80 4.337145 ACAAAAGTGTTGGTAAGTGGACA 58.663 39.130 0.00 0.00 32.58 4.02
80 81 4.396790 TGACAAAAGTGTTGGTAAGTGGAC 59.603 41.667 0.00 0.00 38.41 4.02
81 82 4.590918 TGACAAAAGTGTTGGTAAGTGGA 58.409 39.130 0.00 0.00 38.41 4.02
82 83 4.974368 TGACAAAAGTGTTGGTAAGTGG 57.026 40.909 0.00 0.00 38.41 4.00
83 84 6.130298 TCATGACAAAAGTGTTGGTAAGTG 57.870 37.500 0.00 0.00 38.41 3.16
84 85 6.767524 TTCATGACAAAAGTGTTGGTAAGT 57.232 33.333 0.00 0.00 38.41 2.24
85 86 6.144402 GCATTCATGACAAAAGTGTTGGTAAG 59.856 38.462 0.00 0.00 38.41 2.34
86 87 5.982516 GCATTCATGACAAAAGTGTTGGTAA 59.017 36.000 0.00 0.00 38.41 2.85
87 88 5.068329 TGCATTCATGACAAAAGTGTTGGTA 59.932 36.000 0.00 0.00 38.41 3.25
88 89 4.141981 TGCATTCATGACAAAAGTGTTGGT 60.142 37.500 0.00 0.00 38.41 3.67
89 90 4.370049 TGCATTCATGACAAAAGTGTTGG 58.630 39.130 0.00 0.00 38.41 3.77
90 91 5.521010 ACTTGCATTCATGACAAAAGTGTTG 59.479 36.000 0.00 0.00 38.41 3.33
91 92 5.521010 CACTTGCATTCATGACAAAAGTGTT 59.479 36.000 20.94 0.10 38.41 3.32
92 93 5.045215 CACTTGCATTCATGACAAAAGTGT 58.955 37.500 20.94 6.51 42.10 3.55
93 94 5.174398 GTCACTTGCATTCATGACAAAAGTG 59.826 40.000 22.15 22.15 40.95 3.16
94 95 5.163530 TGTCACTTGCATTCATGACAAAAGT 60.164 36.000 16.12 0.64 46.30 2.66
95 96 5.283294 TGTCACTTGCATTCATGACAAAAG 58.717 37.500 16.12 0.00 46.30 2.27
96 97 5.259832 TGTCACTTGCATTCATGACAAAA 57.740 34.783 16.12 0.00 46.30 2.44
97 98 4.915158 TGTCACTTGCATTCATGACAAA 57.085 36.364 16.12 0.43 46.30 2.83
100 101 4.855388 GTCAATGTCACTTGCATTCATGAC 59.145 41.667 0.00 11.27 41.51 3.06
101 102 4.519730 TGTCAATGTCACTTGCATTCATGA 59.480 37.500 0.00 0.00 34.68 3.07
102 103 4.800784 TGTCAATGTCACTTGCATTCATG 58.199 39.130 0.00 0.00 34.68 3.07
103 104 5.654603 ATGTCAATGTCACTTGCATTCAT 57.345 34.783 0.00 0.00 34.68 2.57
104 105 6.762702 ATATGTCAATGTCACTTGCATTCA 57.237 33.333 0.00 0.00 34.68 2.57
105 106 7.012704 ACCTATATGTCAATGTCACTTGCATTC 59.987 37.037 0.00 0.00 34.68 2.67
106 107 6.830324 ACCTATATGTCAATGTCACTTGCATT 59.170 34.615 0.00 0.00 37.06 3.56
107 108 6.261603 CACCTATATGTCAATGTCACTTGCAT 59.738 38.462 0.00 0.00 32.01 3.96
108 109 5.585844 CACCTATATGTCAATGTCACTTGCA 59.414 40.000 0.00 0.00 0.00 4.08
109 110 5.817296 TCACCTATATGTCAATGTCACTTGC 59.183 40.000 0.00 0.00 0.00 4.01
110 111 7.496920 ACATCACCTATATGTCAATGTCACTTG 59.503 37.037 0.00 0.00 32.02 3.16
111 112 7.568349 ACATCACCTATATGTCAATGTCACTT 58.432 34.615 0.00 0.00 32.02 3.16
112 113 7.129457 ACATCACCTATATGTCAATGTCACT 57.871 36.000 0.00 0.00 32.02 3.41
113 114 7.792374 AACATCACCTATATGTCAATGTCAC 57.208 36.000 6.30 0.00 36.56 3.67
114 115 8.267183 AGAAACATCACCTATATGTCAATGTCA 58.733 33.333 6.30 0.00 36.56 3.58
115 116 8.668510 AGAAACATCACCTATATGTCAATGTC 57.331 34.615 6.30 0.00 36.56 3.06
116 117 7.439356 CGAGAAACATCACCTATATGTCAATGT 59.561 37.037 0.00 1.89 36.56 2.71
117 118 7.095481 CCGAGAAACATCACCTATATGTCAATG 60.095 40.741 0.00 0.00 36.56 2.82
118 119 6.931281 CCGAGAAACATCACCTATATGTCAAT 59.069 38.462 0.00 0.00 36.56 2.57
119 120 6.097696 TCCGAGAAACATCACCTATATGTCAA 59.902 38.462 0.00 0.00 36.56 3.18
120 121 5.596772 TCCGAGAAACATCACCTATATGTCA 59.403 40.000 0.00 0.00 36.56 3.58
121 122 6.085555 TCCGAGAAACATCACCTATATGTC 57.914 41.667 0.00 0.00 36.56 3.06
122 123 6.127168 TGTTCCGAGAAACATCACCTATATGT 60.127 38.462 0.00 0.00 39.22 2.29
123 124 6.280643 TGTTCCGAGAAACATCACCTATATG 58.719 40.000 0.00 0.00 34.31 1.78
124 125 6.479972 TGTTCCGAGAAACATCACCTATAT 57.520 37.500 0.00 0.00 34.31 0.86
125 126 5.925506 TGTTCCGAGAAACATCACCTATA 57.074 39.130 0.00 0.00 34.31 1.31
126 127 4.819105 TGTTCCGAGAAACATCACCTAT 57.181 40.909 0.00 0.00 34.31 2.57
127 128 4.819105 ATGTTCCGAGAAACATCACCTA 57.181 40.909 5.34 0.00 44.53 3.08
128 129 3.703001 ATGTTCCGAGAAACATCACCT 57.297 42.857 5.34 0.00 44.53 4.00
129 130 4.766404 AAATGTTCCGAGAAACATCACC 57.234 40.909 10.02 0.00 46.49 4.02
130 131 4.917415 CCAAAATGTTCCGAGAAACATCAC 59.083 41.667 10.02 0.00 46.49 3.06
131 132 4.558496 GCCAAAATGTTCCGAGAAACATCA 60.558 41.667 10.02 0.00 46.49 3.07
132 133 3.920412 GCCAAAATGTTCCGAGAAACATC 59.080 43.478 10.02 0.00 46.49 3.06
134 135 2.690497 TGCCAAAATGTTCCGAGAAACA 59.310 40.909 1.41 1.41 42.92 2.83
135 136 3.363341 TGCCAAAATGTTCCGAGAAAC 57.637 42.857 0.00 0.00 0.00 2.78
136 137 3.826157 AGATGCCAAAATGTTCCGAGAAA 59.174 39.130 0.00 0.00 0.00 2.52
137 138 3.420893 AGATGCCAAAATGTTCCGAGAA 58.579 40.909 0.00 0.00 0.00 2.87
138 139 3.071874 AGATGCCAAAATGTTCCGAGA 57.928 42.857 0.00 0.00 0.00 4.04
139 140 3.855689 AAGATGCCAAAATGTTCCGAG 57.144 42.857 0.00 0.00 0.00 4.63
140 141 5.913137 AATAAGATGCCAAAATGTTCCGA 57.087 34.783 0.00 0.00 0.00 4.55
141 142 5.868801 ACAAATAAGATGCCAAAATGTTCCG 59.131 36.000 0.00 0.00 0.00 4.30
142 143 8.947055 ATACAAATAAGATGCCAAAATGTTCC 57.053 30.769 0.00 0.00 0.00 3.62
186 187 9.878599 CGTCAGTTTGAAAACTTCATAACTAAT 57.121 29.630 5.70 0.00 46.52 1.73
187 188 9.100554 TCGTCAGTTTGAAAACTTCATAACTAA 57.899 29.630 5.70 2.39 46.52 2.24
188 189 8.651391 TCGTCAGTTTGAAAACTTCATAACTA 57.349 30.769 5.70 0.00 46.52 2.24
189 190 7.548196 TCGTCAGTTTGAAAACTTCATAACT 57.452 32.000 5.70 9.31 46.52 2.24
190 191 8.067784 TGATCGTCAGTTTGAAAACTTCATAAC 58.932 33.333 5.70 0.60 46.52 1.89
191 192 8.148807 TGATCGTCAGTTTGAAAACTTCATAA 57.851 30.769 5.70 0.00 46.52 1.90
192 193 7.722795 TGATCGTCAGTTTGAAAACTTCATA 57.277 32.000 5.70 0.00 46.52 2.15
193 194 6.618287 TGATCGTCAGTTTGAAAACTTCAT 57.382 33.333 5.70 0.00 46.52 2.57
194 195 6.429791 TTGATCGTCAGTTTGAAAACTTCA 57.570 33.333 5.70 4.76 46.52 3.02
195 196 6.076092 CGTTTGATCGTCAGTTTGAAAACTTC 60.076 38.462 5.70 2.36 46.52 3.01
196 197 5.737290 CGTTTGATCGTCAGTTTGAAAACTT 59.263 36.000 5.70 0.00 46.52 2.66
198 199 4.436523 CCGTTTGATCGTCAGTTTGAAAAC 59.563 41.667 0.00 0.00 39.17 2.43
199 200 4.095185 ACCGTTTGATCGTCAGTTTGAAAA 59.905 37.500 0.00 0.00 0.00 2.29
200 201 3.623960 ACCGTTTGATCGTCAGTTTGAAA 59.376 39.130 0.00 0.00 0.00 2.69
201 202 3.199677 ACCGTTTGATCGTCAGTTTGAA 58.800 40.909 0.00 0.00 0.00 2.69
202 203 2.798283 GACCGTTTGATCGTCAGTTTGA 59.202 45.455 0.00 0.00 0.00 2.69
203 204 2.542178 TGACCGTTTGATCGTCAGTTTG 59.458 45.455 0.00 0.00 0.00 2.93
204 205 2.828877 TGACCGTTTGATCGTCAGTTT 58.171 42.857 0.00 0.00 0.00 2.66
205 206 2.519377 TGACCGTTTGATCGTCAGTT 57.481 45.000 0.00 0.00 0.00 3.16
206 207 2.519377 TTGACCGTTTGATCGTCAGT 57.481 45.000 1.51 0.00 0.00 3.41
207 208 2.157668 CCTTTGACCGTTTGATCGTCAG 59.842 50.000 1.51 0.00 0.00 3.51
208 209 2.139917 CCTTTGACCGTTTGATCGTCA 58.860 47.619 0.00 0.00 0.00 4.35
209 210 1.463444 CCCTTTGACCGTTTGATCGTC 59.537 52.381 0.00 0.00 0.00 4.20
210 211 1.202722 ACCCTTTGACCGTTTGATCGT 60.203 47.619 0.00 0.00 0.00 3.73
211 212 1.519408 ACCCTTTGACCGTTTGATCG 58.481 50.000 0.00 0.00 0.00 3.69
212 213 5.441709 TTTTACCCTTTGACCGTTTGATC 57.558 39.130 0.00 0.00 0.00 2.92
213 214 4.261867 GCTTTTACCCTTTGACCGTTTGAT 60.262 41.667 0.00 0.00 0.00 2.57
214 215 3.067040 GCTTTTACCCTTTGACCGTTTGA 59.933 43.478 0.00 0.00 0.00 2.69
215 216 3.181485 TGCTTTTACCCTTTGACCGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
216 217 3.025262 TGCTTTTACCCTTTGACCGTTT 58.975 40.909 0.00 0.00 0.00 3.60
217 218 2.359848 GTGCTTTTACCCTTTGACCGTT 59.640 45.455 0.00 0.00 0.00 4.44
218 219 1.951602 GTGCTTTTACCCTTTGACCGT 59.048 47.619 0.00 0.00 0.00 4.83
219 220 1.950909 TGTGCTTTTACCCTTTGACCG 59.049 47.619 0.00 0.00 0.00 4.79
220 221 3.634910 TCTTGTGCTTTTACCCTTTGACC 59.365 43.478 0.00 0.00 0.00 4.02
221 222 4.607955 GTCTTGTGCTTTTACCCTTTGAC 58.392 43.478 0.00 0.00 0.00 3.18
222 223 3.314080 CGTCTTGTGCTTTTACCCTTTGA 59.686 43.478 0.00 0.00 0.00 2.69
223 224 3.314080 TCGTCTTGTGCTTTTACCCTTTG 59.686 43.478 0.00 0.00 0.00 2.77
224 225 3.314357 GTCGTCTTGTGCTTTTACCCTTT 59.686 43.478 0.00 0.00 0.00 3.11
225 226 2.876550 GTCGTCTTGTGCTTTTACCCTT 59.123 45.455 0.00 0.00 0.00 3.95
226 227 2.158871 TGTCGTCTTGTGCTTTTACCCT 60.159 45.455 0.00 0.00 0.00 4.34
227 228 2.215196 TGTCGTCTTGTGCTTTTACCC 58.785 47.619 0.00 0.00 0.00 3.69
228 229 3.955771 TTGTCGTCTTGTGCTTTTACC 57.044 42.857 0.00 0.00 0.00 2.85
229 230 4.905269 ACTTTGTCGTCTTGTGCTTTTAC 58.095 39.130 0.00 0.00 0.00 2.01
230 231 5.235616 CCTACTTTGTCGTCTTGTGCTTTTA 59.764 40.000 0.00 0.00 0.00 1.52
231 232 4.035208 CCTACTTTGTCGTCTTGTGCTTTT 59.965 41.667 0.00 0.00 0.00 2.27
232 233 3.560068 CCTACTTTGTCGTCTTGTGCTTT 59.440 43.478 0.00 0.00 0.00 3.51
233 234 3.131396 CCTACTTTGTCGTCTTGTGCTT 58.869 45.455 0.00 0.00 0.00 3.91
234 235 2.102588 ACCTACTTTGTCGTCTTGTGCT 59.897 45.455 0.00 0.00 0.00 4.40
235 236 2.480845 ACCTACTTTGTCGTCTTGTGC 58.519 47.619 0.00 0.00 0.00 4.57
236 237 3.247648 CCAACCTACTTTGTCGTCTTGTG 59.752 47.826 0.00 0.00 0.00 3.33
237 238 3.463944 CCAACCTACTTTGTCGTCTTGT 58.536 45.455 0.00 0.00 0.00 3.16
238 239 2.806244 CCCAACCTACTTTGTCGTCTTG 59.194 50.000 0.00 0.00 0.00 3.02
239 240 2.809299 GCCCAACCTACTTTGTCGTCTT 60.809 50.000 0.00 0.00 0.00 3.01
240 241 1.270678 GCCCAACCTACTTTGTCGTCT 60.271 52.381 0.00 0.00 0.00 4.18
241 242 1.154197 GCCCAACCTACTTTGTCGTC 58.846 55.000 0.00 0.00 0.00 4.20
242 243 0.470766 TGCCCAACCTACTTTGTCGT 59.529 50.000 0.00 0.00 0.00 4.34
243 244 1.535462 CTTGCCCAACCTACTTTGTCG 59.465 52.381 0.00 0.00 0.00 4.35
244 245 2.552743 GTCTTGCCCAACCTACTTTGTC 59.447 50.000 0.00 0.00 0.00 3.18
245 246 2.583143 GTCTTGCCCAACCTACTTTGT 58.417 47.619 0.00 0.00 0.00 2.83
246 247 1.886542 GGTCTTGCCCAACCTACTTTG 59.113 52.381 0.00 0.00 32.54 2.77
247 248 1.544759 CGGTCTTGCCCAACCTACTTT 60.545 52.381 0.00 0.00 33.14 2.66
248 249 0.036306 CGGTCTTGCCCAACCTACTT 59.964 55.000 0.00 0.00 33.14 2.24
249 250 1.677552 CGGTCTTGCCCAACCTACT 59.322 57.895 0.00 0.00 33.14 2.57
250 251 2.038837 GCGGTCTTGCCCAACCTAC 61.039 63.158 0.00 0.00 33.14 3.18
251 252 2.349755 GCGGTCTTGCCCAACCTA 59.650 61.111 0.00 0.00 33.14 3.08
254 255 4.025401 CACGCGGTCTTGCCCAAC 62.025 66.667 12.47 0.00 0.00 3.77
258 259 3.595108 GAAAGCACGCGGTCTTGCC 62.595 63.158 12.47 5.43 38.12 4.52
259 260 2.127232 GAAAGCACGCGGTCTTGC 60.127 61.111 12.47 11.67 37.70 4.01
260 261 0.028770 TTTGAAAGCACGCGGTCTTG 59.971 50.000 12.47 0.00 0.00 3.02
261 262 0.736053 TTTTGAAAGCACGCGGTCTT 59.264 45.000 12.47 10.34 0.00 3.01
262 263 0.736053 TTTTTGAAAGCACGCGGTCT 59.264 45.000 12.47 3.35 0.00 3.85
263 264 0.843872 GTTTTTGAAAGCACGCGGTC 59.156 50.000 12.47 0.41 0.00 4.79
264 265 0.454196 AGTTTTTGAAAGCACGCGGT 59.546 45.000 12.47 0.00 0.00 5.68
265 266 2.307049 CTAGTTTTTGAAAGCACGCGG 58.693 47.619 12.47 0.00 0.00 6.46
266 267 2.307049 CCTAGTTTTTGAAAGCACGCG 58.693 47.619 3.53 3.53 0.00 6.01
267 268 2.607038 CCCCTAGTTTTTGAAAGCACGC 60.607 50.000 0.00 0.00 0.00 5.34
268 269 2.607038 GCCCCTAGTTTTTGAAAGCACG 60.607 50.000 0.00 0.00 0.00 5.34
269 270 2.364002 TGCCCCTAGTTTTTGAAAGCAC 59.636 45.455 0.00 0.00 0.00 4.40
270 271 2.672098 TGCCCCTAGTTTTTGAAAGCA 58.328 42.857 0.00 0.00 0.00 3.91
271 272 3.961480 ATGCCCCTAGTTTTTGAAAGC 57.039 42.857 0.00 0.00 0.00 3.51
272 273 5.588648 TCGATATGCCCCTAGTTTTTGAAAG 59.411 40.000 0.00 0.00 0.00 2.62
273 274 5.502079 TCGATATGCCCCTAGTTTTTGAAA 58.498 37.500 0.00 0.00 0.00 2.69
274 275 5.105567 TCGATATGCCCCTAGTTTTTGAA 57.894 39.130 0.00 0.00 0.00 2.69
275 276 4.764050 TCGATATGCCCCTAGTTTTTGA 57.236 40.909 0.00 0.00 0.00 2.69
276 277 5.530915 TCAATCGATATGCCCCTAGTTTTTG 59.469 40.000 0.00 0.00 0.00 2.44
277 278 5.690865 TCAATCGATATGCCCCTAGTTTTT 58.309 37.500 0.00 0.00 0.00 1.94
278 279 5.304686 TCAATCGATATGCCCCTAGTTTT 57.695 39.130 0.00 0.00 0.00 2.43
279 280 4.263068 CCTCAATCGATATGCCCCTAGTTT 60.263 45.833 0.00 0.00 0.00 2.66
280 281 3.261897 CCTCAATCGATATGCCCCTAGTT 59.738 47.826 0.00 0.00 0.00 2.24
281 282 2.834549 CCTCAATCGATATGCCCCTAGT 59.165 50.000 0.00 0.00 0.00 2.57
282 283 2.169352 CCCTCAATCGATATGCCCCTAG 59.831 54.545 0.00 0.00 0.00 3.02
283 284 2.187958 CCCTCAATCGATATGCCCCTA 58.812 52.381 0.00 0.00 0.00 3.53
284 285 0.987294 CCCTCAATCGATATGCCCCT 59.013 55.000 0.00 0.00 0.00 4.79
285 286 0.035056 CCCCTCAATCGATATGCCCC 60.035 60.000 0.00 0.00 0.00 5.80
286 287 0.035056 CCCCCTCAATCGATATGCCC 60.035 60.000 0.00 0.00 0.00 5.36
287 288 0.984230 TCCCCCTCAATCGATATGCC 59.016 55.000 0.00 0.00 0.00 4.40
288 289 1.347707 TGTCCCCCTCAATCGATATGC 59.652 52.381 0.00 0.00 0.00 3.14
289 290 3.988976 ATGTCCCCCTCAATCGATATG 57.011 47.619 0.00 0.00 0.00 1.78
290 291 5.094387 AGTTATGTCCCCCTCAATCGATAT 58.906 41.667 0.00 0.00 0.00 1.63
291 292 4.489737 AGTTATGTCCCCCTCAATCGATA 58.510 43.478 0.00 0.00 0.00 2.92
292 293 3.318313 AGTTATGTCCCCCTCAATCGAT 58.682 45.455 0.00 0.00 0.00 3.59
293 294 2.759355 AGTTATGTCCCCCTCAATCGA 58.241 47.619 0.00 0.00 0.00 3.59
294 295 3.552273 CGTAGTTATGTCCCCCTCAATCG 60.552 52.174 0.00 0.00 0.00 3.34
295 296 3.244112 CCGTAGTTATGTCCCCCTCAATC 60.244 52.174 0.00 0.00 0.00 2.67
296 297 2.704065 CCGTAGTTATGTCCCCCTCAAT 59.296 50.000 0.00 0.00 0.00 2.57
297 298 2.112998 CCGTAGTTATGTCCCCCTCAA 58.887 52.381 0.00 0.00 0.00 3.02
298 299 1.690209 CCCGTAGTTATGTCCCCCTCA 60.690 57.143 0.00 0.00 0.00 3.86
299 300 1.046204 CCCGTAGTTATGTCCCCCTC 58.954 60.000 0.00 0.00 0.00 4.30
300 301 0.340908 ACCCGTAGTTATGTCCCCCT 59.659 55.000 0.00 0.00 0.00 4.79
301 302 2.086610 TACCCGTAGTTATGTCCCCC 57.913 55.000 0.00 0.00 0.00 5.40
302 303 3.233507 TCATACCCGTAGTTATGTCCCC 58.766 50.000 0.00 0.00 0.00 4.81
303 304 4.942761 TTCATACCCGTAGTTATGTCCC 57.057 45.455 0.00 0.00 0.00 4.46
304 305 6.985117 TGTATTCATACCCGTAGTTATGTCC 58.015 40.000 0.00 0.00 32.33 4.02
305 306 9.485206 AATTGTATTCATACCCGTAGTTATGTC 57.515 33.333 0.00 0.00 32.33 3.06
310 311 8.098912 GGGATAATTGTATTCATACCCGTAGTT 58.901 37.037 0.00 0.00 32.33 2.24
311 312 7.456902 AGGGATAATTGTATTCATACCCGTAGT 59.543 37.037 0.00 0.00 39.67 2.73
312 313 7.848128 AGGGATAATTGTATTCATACCCGTAG 58.152 38.462 0.00 0.00 39.67 3.51
313 314 7.801893 AGGGATAATTGTATTCATACCCGTA 57.198 36.000 0.00 0.00 39.67 4.02
314 315 6.697641 AGGGATAATTGTATTCATACCCGT 57.302 37.500 0.00 0.00 39.67 5.28
315 316 9.681062 ATTTAGGGATAATTGTATTCATACCCG 57.319 33.333 0.00 0.00 39.67 5.28
342 343 9.762381 TGGTTGGGAAGAGTTATTATGTTTATT 57.238 29.630 0.00 0.00 0.00 1.40
350 351 6.834451 TGTTGTTTGGTTGGGAAGAGTTATTA 59.166 34.615 0.00 0.00 0.00 0.98
361 362 3.885724 AGAGTTTGTTGTTTGGTTGGG 57.114 42.857 0.00 0.00 0.00 4.12
588 593 9.474920 TGGAATAGTTTGTGAAAAACATGATTC 57.525 29.630 0.00 6.52 38.99 2.52
601 606 5.964958 AGTGGTTCATGGAATAGTTTGTG 57.035 39.130 0.00 0.00 0.00 3.33
602 607 6.779860 AGTAGTGGTTCATGGAATAGTTTGT 58.220 36.000 0.00 0.00 0.00 2.83
612 637 3.981071 TGGAAGAGTAGTGGTTCATGG 57.019 47.619 0.00 0.00 0.00 3.66
631 656 7.714377 AGCCATCTTAGTGTTCTTCATCTAATG 59.286 37.037 0.00 0.00 0.00 1.90
632 657 7.800092 AGCCATCTTAGTGTTCTTCATCTAAT 58.200 34.615 0.00 0.00 0.00 1.73
634 659 6.798427 AGCCATCTTAGTGTTCTTCATCTA 57.202 37.500 0.00 0.00 0.00 1.98
638 663 6.959639 AAAAAGCCATCTTAGTGTTCTTCA 57.040 33.333 0.00 0.00 31.02 3.02
655 680 8.556517 AGTATGAAGTTTTGACGTTAAAAAGC 57.443 30.769 18.44 11.64 31.92 3.51
780 805 4.088496 GTCCATGTGTTGTTACGTACGTAC 59.912 45.833 26.83 18.52 0.00 3.67
1351 1398 0.390603 TCCCGTAATGACCAGCAACG 60.391 55.000 0.00 0.00 32.07 4.10
1365 1412 1.003233 GGCTTTCAAGAGCTCCCGT 60.003 57.895 10.93 0.00 42.32 5.28
1411 1458 1.604147 GGTGCTTTTCCAATCCCCCG 61.604 60.000 0.00 0.00 0.00 5.73
1506 1554 9.907229 CTTATTATTTAGGAACTGAGGGAGTTT 57.093 33.333 0.00 0.00 45.48 2.66
1508 1556 7.420330 GGCTTATTATTTAGGAACTGAGGGAGT 60.420 40.741 0.00 0.00 41.52 3.85
1509 1557 6.937465 GGCTTATTATTTAGGAACTGAGGGAG 59.063 42.308 0.00 0.00 41.52 4.30
1510 1558 6.388689 TGGCTTATTATTTAGGAACTGAGGGA 59.611 38.462 0.00 0.00 41.52 4.20
1511 1559 6.601332 TGGCTTATTATTTAGGAACTGAGGG 58.399 40.000 0.00 0.00 41.52 4.30
1512 1560 8.697507 AATGGCTTATTATTTAGGAACTGAGG 57.302 34.615 0.00 0.00 41.52 3.86
1563 1861 9.871238 AGTGTAGATTCACTCATTTTATTACGT 57.129 29.630 0.00 0.00 44.07 3.57
1610 1908 9.647918 AGAGATTTCAATAGGACTACATACAGA 57.352 33.333 0.00 0.00 0.00 3.41
1618 1916 9.614792 GCCTTTTTAGAGATTTCAATAGGACTA 57.385 33.333 0.00 0.00 0.00 2.59
1619 1917 8.332487 AGCCTTTTTAGAGATTTCAATAGGACT 58.668 33.333 0.00 0.00 0.00 3.85
1620 1918 8.512966 AGCCTTTTTAGAGATTTCAATAGGAC 57.487 34.615 0.00 0.00 0.00 3.85
1649 1947 3.105283 ACTACTCCCACCGCTTCTAAAT 58.895 45.455 0.00 0.00 0.00 1.40
1657 1955 0.872388 CAACAAACTACTCCCACCGC 59.128 55.000 0.00 0.00 0.00 5.68
1659 1957 1.975660 TGCAACAAACTACTCCCACC 58.024 50.000 0.00 0.00 0.00 4.61
1660 1958 5.699097 TTTATGCAACAAACTACTCCCAC 57.301 39.130 0.00 0.00 0.00 4.61
1661 1959 5.772672 ACATTTATGCAACAAACTACTCCCA 59.227 36.000 0.00 0.00 0.00 4.37
1662 1960 6.267496 ACATTTATGCAACAAACTACTCCC 57.733 37.500 0.00 0.00 0.00 4.30
1663 1961 7.328493 GGAAACATTTATGCAACAAACTACTCC 59.672 37.037 0.00 0.00 0.00 3.85
1697 2310 3.769536 CATCCACAGAAAAATAACGCCC 58.230 45.455 0.00 0.00 0.00 6.13
1716 2329 3.134623 TCCCATAGAACATGAACTCGCAT 59.865 43.478 0.00 0.00 0.00 4.73
1722 2335 7.255381 CCAAGATGAATCCCATAGAACATGAAC 60.255 40.741 0.00 0.00 35.17 3.18
1822 2435 4.785301 ACACTCCATTATCATTGAGGGTG 58.215 43.478 0.00 2.29 37.41 4.61
1974 2588 1.386533 CTTAAGGCTGATGCTGGTGG 58.613 55.000 0.00 0.00 39.59 4.61
2052 2666 2.586792 GGGCCGAGTCTGCAGAAT 59.413 61.111 20.19 19.08 0.00 2.40
2053 2667 3.706373 GGGGCCGAGTCTGCAGAA 61.706 66.667 20.19 0.00 0.00 3.02
2055 2669 4.463879 CAGGGGCCGAGTCTGCAG 62.464 72.222 7.63 7.63 0.00 4.41
2057 2671 4.767255 CACAGGGGCCGAGTCTGC 62.767 72.222 7.35 0.00 32.19 4.26
2059 2673 4.640690 ACCACAGGGGCCGAGTCT 62.641 66.667 0.00 0.00 42.05 3.24
2060 2674 4.083862 GACCACAGGGGCCGAGTC 62.084 72.222 0.00 0.00 42.05 3.36
2062 2676 4.394712 GTGACCACAGGGGCCGAG 62.395 72.222 0.00 0.00 44.10 4.63
2160 3369 1.002011 GTGGAAACTGGGAGGCTCC 60.002 63.158 25.80 25.80 35.23 4.70
2170 3379 1.482593 CTAGGGATGCGAGTGGAAACT 59.517 52.381 0.00 0.00 0.00 2.66
2181 3390 0.181350 CCTGTCCAACCTAGGGATGC 59.819 60.000 14.81 1.06 36.67 3.91
2239 3448 1.218316 GACCAACCAGCTACGGGAG 59.782 63.158 0.00 0.00 0.00 4.30
2272 3481 2.940514 TCTGGTTGGGTATGAGGAGA 57.059 50.000 0.00 0.00 0.00 3.71
2276 3485 4.396166 GTGATGTTTCTGGTTGGGTATGAG 59.604 45.833 0.00 0.00 0.00 2.90
2305 3514 5.614324 TGATGGGAAAGAATCAGTATCGT 57.386 39.130 0.00 0.00 0.00 3.73
2368 3578 9.766277 GAGACAAGAATCAGAATTGTATTGTTC 57.234 33.333 0.00 0.00 37.29 3.18
2369 3579 9.512588 AGAGACAAGAATCAGAATTGTATTGTT 57.487 29.630 0.00 0.00 37.29 2.83
2371 3581 7.909121 GCAGAGACAAGAATCAGAATTGTATTG 59.091 37.037 0.00 0.00 37.29 1.90
2373 3583 7.108194 TGCAGAGACAAGAATCAGAATTGTAT 58.892 34.615 0.00 0.00 37.29 2.29
2374 3584 6.466812 TGCAGAGACAAGAATCAGAATTGTA 58.533 36.000 0.00 0.00 37.29 2.41
2375 3585 5.311265 TGCAGAGACAAGAATCAGAATTGT 58.689 37.500 0.00 0.00 39.76 2.71
2376 3586 5.874895 TGCAGAGACAAGAATCAGAATTG 57.125 39.130 0.00 0.00 0.00 2.32
2404 4396 4.523943 TGGCTACAAATTCTGCTTGACAAT 59.476 37.500 0.00 0.00 0.00 2.71
2429 4421 4.142138 GGAGTTCAGATACACCAGTACAGG 60.142 50.000 2.14 2.14 31.96 4.00
2436 4428 4.416516 TGAGAAGGAGTTCAGATACACCA 58.583 43.478 0.00 0.00 34.82 4.17
2554 4546 2.549329 TGACAATGTGTGTGACATCTGC 59.451 45.455 0.00 0.00 45.12 4.26
2578 4570 9.962759 AGAAATAAATGTAAACGTACAATCGTC 57.037 29.630 0.00 0.00 43.41 4.20
2659 4651 4.266714 GAAAATAAACGTCCCAGATCCCA 58.733 43.478 0.00 0.00 0.00 4.37
2660 4652 3.630769 GGAAAATAAACGTCCCAGATCCC 59.369 47.826 0.00 0.00 0.00 3.85
2661 4653 4.266714 TGGAAAATAAACGTCCCAGATCC 58.733 43.478 0.00 0.00 0.00 3.36
2662 4654 7.444183 TCATATGGAAAATAAACGTCCCAGATC 59.556 37.037 2.13 0.00 0.00 2.75
2663 4655 7.287061 TCATATGGAAAATAAACGTCCCAGAT 58.713 34.615 2.13 0.00 0.00 2.90
2664 4656 6.654959 TCATATGGAAAATAAACGTCCCAGA 58.345 36.000 2.13 0.00 0.00 3.86
2665 4657 6.935741 TCATATGGAAAATAAACGTCCCAG 57.064 37.500 2.13 0.00 0.00 4.45
2695 4687 2.305927 ACGCAGGAAATAGGGGGATATG 59.694 50.000 0.00 0.00 0.00 1.78
2696 4688 2.572104 GACGCAGGAAATAGGGGGATAT 59.428 50.000 0.00 0.00 0.00 1.63
2697 4689 1.975680 GACGCAGGAAATAGGGGGATA 59.024 52.381 0.00 0.00 0.00 2.59
2698 4690 0.765510 GACGCAGGAAATAGGGGGAT 59.234 55.000 0.00 0.00 0.00 3.85
2699 4691 0.619255 TGACGCAGGAAATAGGGGGA 60.619 55.000 0.00 0.00 0.00 4.81
2701 4693 1.949525 CAATGACGCAGGAAATAGGGG 59.050 52.381 0.00 0.00 0.00 4.79
2702 4694 2.355756 CACAATGACGCAGGAAATAGGG 59.644 50.000 0.00 0.00 0.00 3.53
2837 4829 1.894466 CCATGAGTTGCCCAACATTGA 59.106 47.619 13.08 0.00 43.47 2.57
2847 4839 1.868469 TTTGCTTTGCCATGAGTTGC 58.132 45.000 0.00 0.00 0.00 4.17
2893 4885 1.414550 TGGTTTTAGCCCAAGTTTGCC 59.585 47.619 0.00 0.00 0.00 4.52
3038 5030 2.169832 TCAAAAGAGGCGTGAGAAGG 57.830 50.000 0.00 0.00 0.00 3.46
3060 5052 3.664107 TGAATGACTTGGTGTGAGTAGC 58.336 45.455 0.00 0.00 0.00 3.58
3099 5091 3.702792 TCCACACAAAGAAAAGGAACCA 58.297 40.909 0.00 0.00 0.00 3.67
3336 5329 7.254795 GGCATTGTTCTTCTATGTGTATGGTAC 60.255 40.741 0.00 0.00 33.18 3.34
3404 5412 2.958355 CAAAACAACCATGGACTCCAGT 59.042 45.455 21.47 4.26 36.75 4.00
3419 5427 3.181469 ACGCTCTAGGTGTTCTCAAAACA 60.181 43.478 0.00 0.00 34.69 2.83
3434 5442 5.134202 TCTTGTTGATGAAAGACGCTCTA 57.866 39.130 0.00 0.00 0.00 2.43
3594 5603 6.931838 ACGTTGACCTTGACAATCTAGATTA 58.068 36.000 17.53 0.00 0.00 1.75
3697 5708 6.037610 GTGCTAAAATGTAGAGAACTGATGGG 59.962 42.308 0.00 0.00 0.00 4.00
3785 5796 0.172578 CATGCAGCCATGTCACAAGG 59.827 55.000 0.00 0.00 43.07 3.61
3824 5835 1.829222 CTCTTGCCAATCTGCCCAAAT 59.171 47.619 0.00 0.00 0.00 2.32
3892 5903 5.278169 CCAGAAAAACAGTGACATCCAGAAG 60.278 44.000 0.00 0.00 0.00 2.85
3964 5975 4.088496 CACTTGGATTTGTTTCGAAATCGC 59.912 41.667 14.69 1.77 41.44 4.58
4127 6138 1.264288 AGAAGCTTTGCAACGCTACAC 59.736 47.619 28.23 21.15 34.96 2.90
4251 6522 5.695363 GGAGACACGTTTAACTTTAGCTTCT 59.305 40.000 0.00 0.00 0.00 2.85
4263 6534 3.134574 AGCAAATGGGAGACACGTTTA 57.865 42.857 0.00 0.00 0.00 2.01
4284 6555 7.653713 GTCTCCGTCAGTTATCATGTCAAATAT 59.346 37.037 0.00 0.00 0.00 1.28
4366 6659 8.903820 GCCACTAAGTAATTCTGATATTTGGTT 58.096 33.333 0.00 0.00 0.00 3.67
4370 6663 9.905713 TCAAGCCACTAAGTAATTCTGATATTT 57.094 29.630 0.00 0.00 0.00 1.40
4412 6705 4.732285 ATTAATCGGCTAGCATTCGTTG 57.268 40.909 18.24 0.00 0.00 4.10
4485 6782 3.941483 GCTAGAGCAGAGGCAATGTTAAA 59.059 43.478 0.00 0.00 44.61 1.52
4539 6836 2.040178 CGCCCCAGTCCTAGATAACTT 58.960 52.381 0.00 0.00 0.00 2.66
4575 6988 0.866061 CGTAAGCTGGGACGACATCG 60.866 60.000 9.78 0.00 41.60 3.84
4578 6991 2.967397 CCGTAAGCTGGGACGACA 59.033 61.111 15.45 0.00 41.60 4.35
4593 7006 4.383602 CCCTTTTGCACGACGCCG 62.384 66.667 0.00 0.00 41.33 6.46
4594 7007 3.249973 GACCCTTTTGCACGACGCC 62.250 63.158 0.00 0.00 41.33 5.68
4595 7008 2.054140 TTGACCCTTTTGCACGACGC 62.054 55.000 0.00 0.00 42.89 5.19
4596 7009 0.378962 TTTGACCCTTTTGCACGACG 59.621 50.000 0.00 0.00 0.00 5.12
4597 7010 2.793278 ATTTGACCCTTTTGCACGAC 57.207 45.000 0.00 0.00 0.00 4.34
4598 7011 2.428890 ACAATTTGACCCTTTTGCACGA 59.571 40.909 2.79 0.00 0.00 4.35
4599 7012 2.539274 CACAATTTGACCCTTTTGCACG 59.461 45.455 2.79 0.00 0.00 5.34
4600 7013 3.530535 ACACAATTTGACCCTTTTGCAC 58.469 40.909 2.79 0.00 0.00 4.57
4601 7014 3.902881 ACACAATTTGACCCTTTTGCA 57.097 38.095 2.79 0.00 0.00 4.08
4602 7015 9.646427 TTATTATACACAATTTGACCCTTTTGC 57.354 29.630 2.79 0.00 0.00 3.68
4625 7038 7.667219 AGCATAAAATGGACCGAATCTGATTAT 59.333 33.333 2.28 0.00 0.00 1.28
4660 7073 8.869109 TGAAAAGGACATATTTGACCATTTTCT 58.131 29.630 23.31 5.30 38.22 2.52
4661 7074 8.925700 GTGAAAAGGACATATTTGACCATTTTC 58.074 33.333 20.28 20.28 38.22 2.29
4666 7080 6.016360 CACTGTGAAAAGGACATATTTGACCA 60.016 38.462 0.32 0.00 39.76 4.02
4670 7084 5.771469 TGCACTGTGAAAAGGACATATTTG 58.229 37.500 12.86 0.00 0.00 2.32
4715 7130 7.125811 AGGTGAGAAGGTAGCATCTGTATTTAA 59.874 37.037 4.10 0.00 0.00 1.52
4716 7131 6.611642 AGGTGAGAAGGTAGCATCTGTATTTA 59.388 38.462 4.10 0.00 0.00 1.40
4717 7132 5.426833 AGGTGAGAAGGTAGCATCTGTATTT 59.573 40.000 4.10 0.00 0.00 1.40
4718 7133 4.965532 AGGTGAGAAGGTAGCATCTGTATT 59.034 41.667 4.10 0.00 0.00 1.89
4719 7134 4.343526 CAGGTGAGAAGGTAGCATCTGTAT 59.656 45.833 4.10 0.00 36.33 2.29
4720 7135 3.701542 CAGGTGAGAAGGTAGCATCTGTA 59.298 47.826 4.10 0.00 36.33 2.74
4721 7136 2.499289 CAGGTGAGAAGGTAGCATCTGT 59.501 50.000 4.10 0.00 36.33 3.41
4722 7137 2.762887 TCAGGTGAGAAGGTAGCATCTG 59.237 50.000 4.10 0.00 41.06 2.90
4723 7138 3.107402 TCAGGTGAGAAGGTAGCATCT 57.893 47.619 0.00 0.00 0.00 2.90
4724 7139 4.100808 AGAATCAGGTGAGAAGGTAGCATC 59.899 45.833 0.00 0.00 0.00 3.91
4725 7140 4.036518 AGAATCAGGTGAGAAGGTAGCAT 58.963 43.478 0.00 0.00 0.00 3.79
4726 7141 3.196469 CAGAATCAGGTGAGAAGGTAGCA 59.804 47.826 0.00 0.00 0.00 3.49
4727 7142 3.431486 CCAGAATCAGGTGAGAAGGTAGC 60.431 52.174 0.00 0.00 0.00 3.58
4728 7143 4.026744 TCCAGAATCAGGTGAGAAGGTAG 58.973 47.826 0.00 0.00 0.00 3.18
4729 7144 3.769844 GTCCAGAATCAGGTGAGAAGGTA 59.230 47.826 0.00 0.00 0.00 3.08
4791 7232 2.371910 TCAACAGAACGACACACACA 57.628 45.000 0.00 0.00 0.00 3.72
4800 7241 2.478134 CTCTCAGCCTTTCAACAGAACG 59.522 50.000 0.00 0.00 0.00 3.95
4801 7242 2.225255 GCTCTCAGCCTTTCAACAGAAC 59.775 50.000 0.00 0.00 34.48 3.01
4803 7244 1.417517 TGCTCTCAGCCTTTCAACAGA 59.582 47.619 0.00 0.00 41.51 3.41
4804 7245 1.888215 TGCTCTCAGCCTTTCAACAG 58.112 50.000 0.00 0.00 41.51 3.16
4805 7246 2.156917 CATGCTCTCAGCCTTTCAACA 58.843 47.619 0.00 0.00 41.51 3.33
4806 7247 2.157738 ACATGCTCTCAGCCTTTCAAC 58.842 47.619 0.00 0.00 41.51 3.18
4808 7249 1.627329 AGACATGCTCTCAGCCTTTCA 59.373 47.619 0.00 0.00 41.51 2.69
4809 7250 2.008329 CAGACATGCTCTCAGCCTTTC 58.992 52.381 0.00 0.00 41.51 2.62
4811 7252 3.857217 CAGACATGCTCTCAGCCTT 57.143 52.632 0.00 0.00 41.51 4.35
4823 7264 2.708051 CACACCAATCAGAGCAGACAT 58.292 47.619 0.00 0.00 0.00 3.06
4826 7267 0.397564 TGCACACCAATCAGAGCAGA 59.602 50.000 0.00 0.00 0.00 4.26
4829 7270 0.801251 GTCTGCACACCAATCAGAGC 59.199 55.000 0.00 0.00 37.51 4.09
4830 7271 1.073964 CGTCTGCACACCAATCAGAG 58.926 55.000 0.00 0.00 37.51 3.35
4846 7287 5.873164 ACCTCTATACAATTTCCACAACGTC 59.127 40.000 0.00 0.00 0.00 4.34
4864 7305 6.183361 CCATCTCAAGAATGATTGGACCTCTA 60.183 42.308 0.00 0.00 39.43 2.43
4884 7325 2.832129 ACGACAACCACATAGTCCATCT 59.168 45.455 0.00 0.00 0.00 2.90
4888 7329 2.230508 TCTGACGACAACCACATAGTCC 59.769 50.000 0.00 0.00 0.00 3.85
4920 7361 5.957798 TGAAAGGCAGATTCAATGCTTTAG 58.042 37.500 0.00 0.00 41.51 1.85
4928 7369 3.673902 TCGACATGAAAGGCAGATTCAA 58.326 40.909 0.00 0.00 39.98 2.69
4933 7374 3.616956 ATTCTCGACATGAAAGGCAGA 57.383 42.857 0.00 0.00 0.00 4.26
4938 7379 3.551890 CCACCGTATTCTCGACATGAAAG 59.448 47.826 0.00 0.00 0.00 2.62
4939 7380 3.517602 CCACCGTATTCTCGACATGAAA 58.482 45.455 0.00 0.00 0.00 2.69
4940 7381 2.737359 GCCACCGTATTCTCGACATGAA 60.737 50.000 0.00 0.00 0.00 2.57
4941 7382 1.202371 GCCACCGTATTCTCGACATGA 60.202 52.381 0.00 0.00 0.00 3.07
4942 7383 1.202417 AGCCACCGTATTCTCGACATG 60.202 52.381 0.00 0.00 0.00 3.21
4943 7384 1.067212 GAGCCACCGTATTCTCGACAT 59.933 52.381 0.00 0.00 0.00 3.06
4944 7385 0.454600 GAGCCACCGTATTCTCGACA 59.545 55.000 0.00 0.00 0.00 4.35
4945 7386 0.248949 GGAGCCACCGTATTCTCGAC 60.249 60.000 0.00 0.00 0.00 4.20
4946 7387 0.395311 AGGAGCCACCGTATTCTCGA 60.395 55.000 0.00 0.00 44.74 4.04
4947 7388 0.249073 CAGGAGCCACCGTATTCTCG 60.249 60.000 0.00 0.00 44.74 4.04
4948 7389 0.530870 GCAGGAGCCACCGTATTCTC 60.531 60.000 0.00 0.00 44.74 2.87
4949 7390 1.522569 GCAGGAGCCACCGTATTCT 59.477 57.895 0.00 0.00 44.74 2.40
4950 7391 4.126524 GCAGGAGCCACCGTATTC 57.873 61.111 0.00 0.00 44.74 1.75
4960 7401 4.600576 GAGCGCTAGGGCAGGAGC 62.601 72.222 30.70 12.43 38.60 4.70
4961 7402 3.922640 GGAGCGCTAGGGCAGGAG 61.923 72.222 30.70 0.00 38.60 3.69
4964 7405 4.232878 CAGGGAGCGCTAGGGCAG 62.233 72.222 30.70 12.83 38.60 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.