Multiple sequence alignment - TraesCS5D01G169200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G169200 chr5D 100.000 3427 0 0 1 3427 265546672 265543246 0.000000e+00 6329.0
1 TraesCS5D01G169200 chr5D 100.000 35 0 0 1460 1494 265545179 265545145 7.940000e-07 65.8
2 TraesCS5D01G169200 chr5D 100.000 35 0 0 1494 1528 265545213 265545179 7.940000e-07 65.8
3 TraesCS5D01G169200 chr5D 100.000 30 0 0 1921 1950 113382093 113382122 4.780000e-04 56.5
4 TraesCS5D01G169200 chr5B 97.503 1722 34 6 1494 3211 298682759 298681043 0.000000e+00 2933.0
5 TraesCS5D01G169200 chr5B 92.243 954 50 13 555 1494 298683668 298682725 0.000000e+00 1330.0
6 TraesCS5D01G169200 chr5B 100.000 28 0 0 1916 1943 539438012 539437985 6.000000e-03 52.8
7 TraesCS5D01G169200 chr5A 92.244 1328 85 11 169 1494 353060914 353059603 0.000000e+00 1866.0
8 TraesCS5D01G169200 chr5A 93.836 730 35 7 1494 2215 353059637 353058910 0.000000e+00 1090.0
9 TraesCS5D01G169200 chr5A 93.302 642 25 7 2237 2875 353057985 353057359 0.000000e+00 931.0
10 TraesCS5D01G169200 chr5A 92.506 387 17 7 2872 3252 353057075 353056695 8.360000e-151 544.0
11 TraesCS5D01G169200 chr4A 96.970 33 0 1 1916 1948 238389345 238389314 2.000000e-03 54.7
12 TraesCS5D01G169200 chr4A 94.444 36 0 2 1913 1947 736113358 736113392 2.000000e-03 54.7
13 TraesCS5D01G169200 chr3B 96.970 33 0 1 1916 1948 171174190 171174221 2.000000e-03 54.7
14 TraesCS5D01G169200 chr3B 100.000 28 0 0 1918 1945 786782750 786782777 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G169200 chr5D 265543246 265546672 3426 True 2153.533333 6329 100.000 1 3427 3 chr5D.!!$R1 3426
1 TraesCS5D01G169200 chr5B 298681043 298683668 2625 True 2131.500000 2933 94.873 555 3211 2 chr5B.!!$R2 2656
2 TraesCS5D01G169200 chr5A 353056695 353060914 4219 True 1107.750000 1866 92.972 169 3252 4 chr5A.!!$R1 3083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 768 0.033504 ACCGTCTGATCGTTGCAACT 59.966 50.000 26.09 9.60 0.0 3.16 F
1050 1065 0.179097 CTAAGAAGGTGGCGGCTCTC 60.179 60.000 11.43 1.07 0.0 3.20 F
1131 1146 1.152271 TCCCACCTCTCCTTCTTCCTT 59.848 52.381 0.00 0.00 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1578 0.407139 AAAAGGATGTGCAGGCCTCT 59.593 50.0 0.0 0.0 0.00 3.69 R
2209 2232 1.398958 GGGGTGAAACAGGCAAAGCA 61.399 55.0 0.0 0.0 39.98 3.91 R
2816 3752 2.621668 GCAAAGTTAAGGAGGCCCTGAT 60.622 50.0 0.0 0.0 43.48 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.812147 TGTATACCAATCTAAACATCGATGAC 57.188 34.615 31.33 13.73 0.00 3.06
26 27 7.593644 TGTATACCAATCTAAACATCGATGACG 59.406 37.037 31.33 15.21 41.26 4.35
27 28 3.555956 ACCAATCTAAACATCGATGACGC 59.444 43.478 31.33 0.00 39.58 5.19
28 29 3.555547 CCAATCTAAACATCGATGACGCA 59.444 43.478 31.33 11.23 39.58 5.24
29 30 4.318333 CCAATCTAAACATCGATGACGCAG 60.318 45.833 31.33 19.83 39.58 5.18
45 46 2.300623 GCAGTAAATTCTATGCGCGG 57.699 50.000 8.83 0.00 0.00 6.46
46 47 1.069906 GCAGTAAATTCTATGCGCGGG 60.070 52.381 8.83 0.00 0.00 6.13
47 48 2.479837 CAGTAAATTCTATGCGCGGGA 58.520 47.619 8.83 0.00 0.00 5.14
48 49 2.476619 CAGTAAATTCTATGCGCGGGAG 59.523 50.000 8.83 0.00 0.00 4.30
49 50 2.364324 AGTAAATTCTATGCGCGGGAGA 59.636 45.455 8.83 1.73 0.00 3.71
50 51 1.871080 AAATTCTATGCGCGGGAGAG 58.129 50.000 8.83 0.00 0.00 3.20
51 52 0.034059 AATTCTATGCGCGGGAGAGG 59.966 55.000 8.83 0.00 0.00 3.69
52 53 1.821061 ATTCTATGCGCGGGAGAGGG 61.821 60.000 8.83 0.00 0.00 4.30
60 61 3.522731 CGGGAGAGGGCGAGAGTG 61.523 72.222 0.00 0.00 0.00 3.51
61 62 3.151022 GGGAGAGGGCGAGAGTGG 61.151 72.222 0.00 0.00 0.00 4.00
62 63 2.363147 GGAGAGGGCGAGAGTGGT 60.363 66.667 0.00 0.00 0.00 4.16
63 64 2.716017 GGAGAGGGCGAGAGTGGTG 61.716 68.421 0.00 0.00 0.00 4.17
64 65 2.681778 AGAGGGCGAGAGTGGTGG 60.682 66.667 0.00 0.00 0.00 4.61
65 66 2.997897 GAGGGCGAGAGTGGTGGT 60.998 66.667 0.00 0.00 0.00 4.16
66 67 2.997897 AGGGCGAGAGTGGTGGTC 60.998 66.667 0.00 0.00 0.00 4.02
67 68 4.436998 GGGCGAGAGTGGTGGTCG 62.437 72.222 0.00 0.00 36.77 4.79
68 69 3.371063 GGCGAGAGTGGTGGTCGA 61.371 66.667 0.00 0.00 35.70 4.20
69 70 2.711922 GGCGAGAGTGGTGGTCGAT 61.712 63.158 0.00 0.00 35.70 3.59
70 71 1.517257 GCGAGAGTGGTGGTCGATG 60.517 63.158 0.00 0.00 35.70 3.84
71 72 1.139734 CGAGAGTGGTGGTCGATGG 59.860 63.158 0.00 0.00 35.70 3.51
72 73 1.595993 CGAGAGTGGTGGTCGATGGT 61.596 60.000 0.00 0.00 35.70 3.55
73 74 0.108615 GAGAGTGGTGGTCGATGGTG 60.109 60.000 0.00 0.00 0.00 4.17
74 75 0.541998 AGAGTGGTGGTCGATGGTGA 60.542 55.000 0.00 0.00 0.00 4.02
75 76 0.537188 GAGTGGTGGTCGATGGTGAT 59.463 55.000 0.00 0.00 0.00 3.06
76 77 0.984230 AGTGGTGGTCGATGGTGATT 59.016 50.000 0.00 0.00 0.00 2.57
77 78 1.351017 AGTGGTGGTCGATGGTGATTT 59.649 47.619 0.00 0.00 0.00 2.17
78 79 1.737793 GTGGTGGTCGATGGTGATTTC 59.262 52.381 0.00 0.00 0.00 2.17
79 80 1.349357 TGGTGGTCGATGGTGATTTCA 59.651 47.619 0.00 0.00 0.00 2.69
80 81 2.026356 TGGTGGTCGATGGTGATTTCAT 60.026 45.455 0.00 0.00 0.00 2.57
81 82 2.355756 GGTGGTCGATGGTGATTTCATG 59.644 50.000 0.00 0.00 0.00 3.07
82 83 2.016318 TGGTCGATGGTGATTTCATGC 58.984 47.619 0.00 0.00 0.00 4.06
83 84 2.292267 GGTCGATGGTGATTTCATGCT 58.708 47.619 0.00 0.00 0.00 3.79
84 85 2.032550 GGTCGATGGTGATTTCATGCTG 59.967 50.000 0.00 0.00 0.00 4.41
85 86 2.032550 GTCGATGGTGATTTCATGCTGG 59.967 50.000 0.00 0.00 0.00 4.85
86 87 1.268896 CGATGGTGATTTCATGCTGGC 60.269 52.381 0.00 0.00 0.00 4.85
87 88 0.742505 ATGGTGATTTCATGCTGGCG 59.257 50.000 0.00 0.00 0.00 5.69
88 89 0.322366 TGGTGATTTCATGCTGGCGA 60.322 50.000 0.00 0.00 0.00 5.54
89 90 0.379669 GGTGATTTCATGCTGGCGAG 59.620 55.000 0.00 0.00 0.00 5.03
90 91 1.372582 GTGATTTCATGCTGGCGAGA 58.627 50.000 0.00 0.00 0.00 4.04
91 92 1.945394 GTGATTTCATGCTGGCGAGAT 59.055 47.619 0.00 0.00 0.00 2.75
92 93 1.944709 TGATTTCATGCTGGCGAGATG 59.055 47.619 0.00 1.06 0.00 2.90
93 94 1.945394 GATTTCATGCTGGCGAGATGT 59.055 47.619 0.00 0.00 0.00 3.06
94 95 1.089112 TTTCATGCTGGCGAGATGTG 58.911 50.000 0.00 0.00 0.00 3.21
95 96 0.036105 TTCATGCTGGCGAGATGTGT 60.036 50.000 0.00 0.00 0.00 3.72
96 97 0.036105 TCATGCTGGCGAGATGTGTT 60.036 50.000 0.00 0.00 0.00 3.32
97 98 0.098200 CATGCTGGCGAGATGTGTTG 59.902 55.000 0.00 0.00 0.00 3.33
98 99 1.651240 ATGCTGGCGAGATGTGTTGC 61.651 55.000 0.00 0.00 0.00 4.17
101 102 4.932789 GGCGAGATGTGTTGCCTA 57.067 55.556 1.32 0.00 44.16 3.93
102 103 3.386543 GGCGAGATGTGTTGCCTAT 57.613 52.632 1.32 0.00 44.16 2.57
103 104 0.940126 GGCGAGATGTGTTGCCTATG 59.060 55.000 1.32 0.00 44.16 2.23
104 105 1.473257 GGCGAGATGTGTTGCCTATGA 60.473 52.381 1.32 0.00 44.16 2.15
105 106 2.279741 GCGAGATGTGTTGCCTATGAA 58.720 47.619 0.00 0.00 0.00 2.57
106 107 2.677836 GCGAGATGTGTTGCCTATGAAA 59.322 45.455 0.00 0.00 0.00 2.69
107 108 3.126858 GCGAGATGTGTTGCCTATGAAAA 59.873 43.478 0.00 0.00 0.00 2.29
108 109 4.201950 GCGAGATGTGTTGCCTATGAAAAT 60.202 41.667 0.00 0.00 0.00 1.82
109 110 5.007626 GCGAGATGTGTTGCCTATGAAAATA 59.992 40.000 0.00 0.00 0.00 1.40
110 111 6.293626 GCGAGATGTGTTGCCTATGAAAATAT 60.294 38.462 0.00 0.00 0.00 1.28
111 112 7.073883 CGAGATGTGTTGCCTATGAAAATATG 58.926 38.462 0.00 0.00 0.00 1.78
112 113 7.041848 CGAGATGTGTTGCCTATGAAAATATGA 60.042 37.037 0.00 0.00 0.00 2.15
113 114 7.934457 AGATGTGTTGCCTATGAAAATATGAC 58.066 34.615 0.00 0.00 0.00 3.06
114 115 6.449635 TGTGTTGCCTATGAAAATATGACC 57.550 37.500 0.00 0.00 0.00 4.02
115 116 5.065859 TGTGTTGCCTATGAAAATATGACCG 59.934 40.000 0.00 0.00 0.00 4.79
116 117 5.295787 GTGTTGCCTATGAAAATATGACCGA 59.704 40.000 0.00 0.00 0.00 4.69
117 118 5.883115 TGTTGCCTATGAAAATATGACCGAA 59.117 36.000 0.00 0.00 0.00 4.30
118 119 6.183360 TGTTGCCTATGAAAATATGACCGAAC 60.183 38.462 0.00 0.00 0.00 3.95
119 120 4.819630 TGCCTATGAAAATATGACCGAACC 59.180 41.667 0.00 0.00 0.00 3.62
120 121 5.063880 GCCTATGAAAATATGACCGAACCT 58.936 41.667 0.00 0.00 0.00 3.50
121 122 5.179555 GCCTATGAAAATATGACCGAACCTC 59.820 44.000 0.00 0.00 0.00 3.85
122 123 6.525629 CCTATGAAAATATGACCGAACCTCT 58.474 40.000 0.00 0.00 0.00 3.69
123 124 6.647067 CCTATGAAAATATGACCGAACCTCTC 59.353 42.308 0.00 0.00 0.00 3.20
125 126 4.081862 TGAAAATATGACCGAACCTCTCGT 60.082 41.667 0.00 0.00 46.65 4.18
126 127 3.438297 AATATGACCGAACCTCTCGTG 57.562 47.619 0.00 0.00 46.65 4.35
127 128 0.454600 TATGACCGAACCTCTCGTGC 59.545 55.000 0.00 0.00 46.65 5.34
128 129 2.126031 GACCGAACCTCTCGTGCC 60.126 66.667 0.00 0.00 46.65 5.01
129 130 3.966026 GACCGAACCTCTCGTGCCG 62.966 68.421 0.00 0.00 46.65 5.69
130 131 3.744719 CCGAACCTCTCGTGCCGA 61.745 66.667 0.00 0.00 46.65 5.54
131 132 2.257371 CGAACCTCTCGTGCCGAA 59.743 61.111 0.00 0.00 42.89 4.30
132 133 1.801913 CGAACCTCTCGTGCCGAAG 60.802 63.158 0.00 1.07 42.89 3.79
133 134 2.048127 AACCTCTCGTGCCGAAGC 60.048 61.111 0.00 0.00 34.74 3.86
134 135 2.493907 GAACCTCTCGTGCCGAAGCT 62.494 60.000 0.00 0.00 40.80 3.74
135 136 2.100879 AACCTCTCGTGCCGAAGCTT 62.101 55.000 0.00 0.00 40.80 3.74
136 137 1.374758 CCTCTCGTGCCGAAGCTTT 60.375 57.895 0.00 0.00 40.80 3.51
137 138 0.951040 CCTCTCGTGCCGAAGCTTTT 60.951 55.000 0.00 0.00 40.80 2.27
138 139 0.164647 CTCTCGTGCCGAAGCTTTTG 59.835 55.000 0.00 0.00 40.80 2.44
139 140 1.207593 CTCGTGCCGAAGCTTTTGG 59.792 57.895 12.96 12.96 40.80 3.28
145 146 3.892200 CCGAAGCTTTTGGCATGTT 57.108 47.368 0.00 0.00 44.79 2.71
146 147 1.421382 CCGAAGCTTTTGGCATGTTG 58.579 50.000 0.00 0.00 44.79 3.33
147 148 1.000385 CCGAAGCTTTTGGCATGTTGA 60.000 47.619 0.00 0.00 44.79 3.18
148 149 2.322161 CGAAGCTTTTGGCATGTTGAG 58.678 47.619 0.00 0.00 44.79 3.02
149 150 2.030893 CGAAGCTTTTGGCATGTTGAGA 60.031 45.455 0.00 0.00 44.79 3.27
150 151 3.366679 CGAAGCTTTTGGCATGTTGAGAT 60.367 43.478 0.00 0.00 44.79 2.75
151 152 3.587797 AGCTTTTGGCATGTTGAGATG 57.412 42.857 0.00 0.00 44.79 2.90
152 153 2.895404 AGCTTTTGGCATGTTGAGATGT 59.105 40.909 0.00 0.00 44.79 3.06
153 154 4.081406 AGCTTTTGGCATGTTGAGATGTA 58.919 39.130 0.00 0.00 44.79 2.29
154 155 4.157289 AGCTTTTGGCATGTTGAGATGTAG 59.843 41.667 0.00 0.00 44.79 2.74
155 156 4.082571 GCTTTTGGCATGTTGAGATGTAGT 60.083 41.667 0.00 0.00 41.35 2.73
156 157 5.375417 TTTTGGCATGTTGAGATGTAGTG 57.625 39.130 0.00 0.00 0.00 2.74
157 158 2.358957 TGGCATGTTGAGATGTAGTGC 58.641 47.619 0.00 0.00 0.00 4.40
158 159 1.672881 GGCATGTTGAGATGTAGTGCC 59.327 52.381 0.00 0.00 43.09 5.01
159 160 2.636830 GCATGTTGAGATGTAGTGCCT 58.363 47.619 0.00 0.00 0.00 4.75
160 161 2.353889 GCATGTTGAGATGTAGTGCCTG 59.646 50.000 0.00 0.00 0.00 4.85
161 162 3.865446 CATGTTGAGATGTAGTGCCTGA 58.135 45.455 0.00 0.00 0.00 3.86
162 163 3.599730 TGTTGAGATGTAGTGCCTGAG 57.400 47.619 0.00 0.00 0.00 3.35
163 164 2.234661 TGTTGAGATGTAGTGCCTGAGG 59.765 50.000 0.00 0.00 0.00 3.86
178 179 0.034198 TGAGGCGACGAAAATGTGGA 59.966 50.000 0.00 0.00 0.00 4.02
184 185 2.856720 GCGACGAAAATGTGGAAAGCAA 60.857 45.455 0.00 0.00 0.00 3.91
188 189 5.799936 CGACGAAAATGTGGAAAGCAATAAT 59.200 36.000 0.00 0.00 0.00 1.28
222 223 2.533266 TGGGCTTTCATATCTCTCGC 57.467 50.000 0.00 0.00 0.00 5.03
236 237 2.355132 TCTCTCGCGAGATGTAGGAAAC 59.645 50.000 36.70 0.00 41.26 2.78
250 251 5.882553 TGTAGGAAACGGTTCAAAACTTTC 58.117 37.500 16.38 0.00 35.25 2.62
262 263 6.453791 GGTTCAAAACTTTCGAGCTTTGTTTC 60.454 38.462 0.00 4.03 32.00 2.78
267 268 9.107367 CAAAACTTTCGAGCTTTGTTTCTATAG 57.893 33.333 0.00 0.00 31.54 1.31
309 310 2.558359 ACCCACTGCTATGCAAAAGAAC 59.442 45.455 3.72 0.00 38.41 3.01
376 377 3.438297 TCCGAACTATAGCTTGCACTC 57.562 47.619 0.00 0.00 0.00 3.51
395 396 1.072159 AGTTGTGCTGCCTCTGACC 59.928 57.895 0.00 0.00 0.00 4.02
405 406 1.416401 TGCCTCTGACCGAAGAAAGTT 59.584 47.619 0.00 0.00 0.00 2.66
434 435 2.360801 CGAAGCTTAGAAGAGAGAGGGG 59.639 54.545 0.00 0.00 0.00 4.79
453 454 0.819582 GGGATGACAATGGTGCAAGG 59.180 55.000 0.00 0.00 0.00 3.61
459 460 3.495331 TGACAATGGTGCAAGGTTATGT 58.505 40.909 0.00 0.00 0.00 2.29
489 490 5.817816 GGGTCCTATTCAACTGACTACATTG 59.182 44.000 0.00 0.00 0.00 2.82
494 495 8.321353 TCCTATTCAACTGACTACATTGTCATT 58.679 33.333 0.00 0.00 44.66 2.57
501 502 4.331968 TGACTACATTGTCATTTGGGTCC 58.668 43.478 0.00 0.00 41.43 4.46
503 504 1.544724 ACATTGTCATTTGGGTCCCG 58.455 50.000 2.65 0.00 0.00 5.14
505 506 2.040545 ACATTGTCATTTGGGTCCCGTA 59.959 45.455 2.65 0.00 0.00 4.02
515 516 2.982026 GGTCCCGTACCCTGTTAGT 58.018 57.895 0.00 0.00 43.16 2.24
518 519 0.114954 TCCCGTACCCTGTTAGTGGT 59.885 55.000 0.00 0.00 38.69 4.16
522 523 3.319122 CCCGTACCCTGTTAGTGGTATAC 59.681 52.174 0.00 0.00 39.22 1.47
523 524 4.210331 CCGTACCCTGTTAGTGGTATACT 58.790 47.826 2.25 0.00 39.22 2.12
524 525 4.037208 CCGTACCCTGTTAGTGGTATACTG 59.963 50.000 2.25 0.00 40.65 2.74
553 554 2.799126 ATGGAAAGCCGGTACAATGA 57.201 45.000 1.90 0.00 36.79 2.57
559 560 0.981183 AGCCGGTACAATGACCAGAA 59.019 50.000 1.90 0.00 39.72 3.02
596 597 4.700268 TTTGCATATCATGTTTCGCACT 57.300 36.364 0.00 0.00 0.00 4.40
753 761 1.215647 GCAAGGACCGTCTGATCGT 59.784 57.895 0.00 0.00 0.00 3.73
757 765 1.080093 GGACCGTCTGATCGTTGCA 60.080 57.895 0.00 0.00 0.00 4.08
759 767 0.438830 GACCGTCTGATCGTTGCAAC 59.561 55.000 19.89 19.89 0.00 4.17
760 768 0.033504 ACCGTCTGATCGTTGCAACT 59.966 50.000 26.09 9.60 0.00 3.16
938 953 3.316573 CTGCCGTCTCCACCTTCCC 62.317 68.421 0.00 0.00 0.00 3.97
939 954 3.003763 GCCGTCTCCACCTTCCCT 61.004 66.667 0.00 0.00 0.00 4.20
1050 1065 0.179097 CTAAGAAGGTGGCGGCTCTC 60.179 60.000 11.43 1.07 0.00 3.20
1071 1086 1.376812 CGACCTGGTTAACCTGCCC 60.377 63.158 24.78 15.96 36.82 5.36
1131 1146 1.152271 TCCCACCTCTCCTTCTTCCTT 59.848 52.381 0.00 0.00 0.00 3.36
1284 1299 2.773993 TCACGGAAGATTTGGTACCC 57.226 50.000 10.07 0.00 0.00 3.69
1350 1365 2.564771 TCTCTTGTTGCTGGTGAACTG 58.435 47.619 0.00 0.00 0.00 3.16
1365 1380 1.470098 GAACTGCACGCATTTGATCCT 59.530 47.619 0.00 0.00 0.00 3.24
1406 1421 8.299570 GGAATTTGCCGAATAAGACATTCATAT 58.700 33.333 0.00 0.00 0.00 1.78
1417 1432 6.992063 AAGACATTCATATGACCAACTCAC 57.008 37.500 4.48 0.00 35.65 3.51
1426 1441 1.985159 TGACCAACTCACCTAATGGCT 59.015 47.619 0.00 0.00 36.37 4.75
1438 1453 1.599542 CTAATGGCTGCGGCTTAGTTC 59.400 52.381 18.85 0.00 38.73 3.01
1489 1504 3.104843 GCTATAGCTCAGTGTTGGAGG 57.895 52.381 17.75 0.00 38.21 4.30
1490 1505 2.695666 GCTATAGCTCAGTGTTGGAGGA 59.304 50.000 17.75 0.00 38.21 3.71
1491 1506 3.323403 GCTATAGCTCAGTGTTGGAGGAT 59.677 47.826 17.75 0.00 38.21 3.24
1492 1507 4.560513 GCTATAGCTCAGTGTTGGAGGATC 60.561 50.000 17.75 0.00 38.21 3.36
1493 1508 1.949799 AGCTCAGTGTTGGAGGATCT 58.050 50.000 0.00 0.00 33.73 2.75
1494 1509 2.264455 AGCTCAGTGTTGGAGGATCTT 58.736 47.619 0.00 0.00 33.73 2.40
1495 1510 3.445008 AGCTCAGTGTTGGAGGATCTTA 58.555 45.455 0.00 0.00 33.73 2.10
1496 1511 3.840666 AGCTCAGTGTTGGAGGATCTTAA 59.159 43.478 0.00 0.00 33.73 1.85
1497 1512 4.081198 AGCTCAGTGTTGGAGGATCTTAAG 60.081 45.833 0.00 0.00 33.73 1.85
1498 1513 4.323104 GCTCAGTGTTGGAGGATCTTAAGT 60.323 45.833 1.63 0.00 33.73 2.24
1499 1514 5.407407 TCAGTGTTGGAGGATCTTAAGTC 57.593 43.478 1.63 0.00 33.73 3.01
1500 1515 5.087323 TCAGTGTTGGAGGATCTTAAGTCT 58.913 41.667 1.63 0.00 33.73 3.24
1501 1516 5.047021 TCAGTGTTGGAGGATCTTAAGTCTG 60.047 44.000 1.63 0.00 33.73 3.51
1502 1517 5.047021 CAGTGTTGGAGGATCTTAAGTCTGA 60.047 44.000 1.63 0.00 33.73 3.27
1503 1518 5.186797 AGTGTTGGAGGATCTTAAGTCTGAG 59.813 44.000 1.63 0.00 33.73 3.35
1504 1519 4.081420 TGTTGGAGGATCTTAAGTCTGAGC 60.081 45.833 1.63 0.00 33.73 4.26
1505 1520 3.987745 TGGAGGATCTTAAGTCTGAGCT 58.012 45.455 1.63 0.00 33.73 4.09
1506 1521 5.130705 TGGAGGATCTTAAGTCTGAGCTA 57.869 43.478 1.63 0.00 33.73 3.32
1507 1522 5.710646 TGGAGGATCTTAAGTCTGAGCTAT 58.289 41.667 1.63 0.00 33.73 2.97
1508 1523 6.853490 TGGAGGATCTTAAGTCTGAGCTATA 58.147 40.000 1.63 0.00 33.73 1.31
1509 1524 6.945435 TGGAGGATCTTAAGTCTGAGCTATAG 59.055 42.308 1.63 0.00 33.73 1.31
1510 1525 6.127730 GGAGGATCTTAAGTCTGAGCTATAGC 60.128 46.154 17.33 17.33 36.84 2.97
1511 1526 8.233550 GGAGGATCTTAAGTCTGAGCTATAGCT 61.234 44.444 27.21 27.21 45.78 3.32
1563 1578 4.729881 ACTTTATGGGTATTGCTTCCCCTA 59.270 41.667 0.00 0.00 42.80 3.53
1853 1869 7.805071 CCAATAAAGTCATCTTGAGTTTGACAC 59.195 37.037 16.71 0.00 46.23 3.67
1986 2006 7.556275 TCTGAAGTCAAACCTTGTAAACTTGAT 59.444 33.333 0.00 0.00 28.90 2.57
1990 2010 7.707104 AGTCAAACCTTGTAAACTTGATCAAG 58.293 34.615 29.74 29.74 43.79 3.02
2594 3527 4.819105 TGTAGTACCACATAGCTGCTTT 57.181 40.909 7.79 0.00 0.00 3.51
2906 4129 9.434420 GATGCTATGCTAGATGTAGAAGAAAAT 57.566 33.333 0.05 0.00 0.00 1.82
2929 4152 2.229543 TGACATCCTTGTGCAGAAATGC 59.770 45.455 7.89 3.21 35.79 3.56
3060 4284 6.473131 TGCGAAATTGTTGATATGAGCAAATC 59.527 34.615 0.00 0.00 0.00 2.17
3235 4463 4.803613 CCTTGCAGGTTCAAGTTTTTGTAC 59.196 41.667 0.00 0.00 41.29 2.90
3248 4476 7.760794 TCAAGTTTTTGTACTTCAACTAGACGA 59.239 33.333 0.00 0.00 36.24 4.20
3252 4480 9.366513 GTTTTTGTACTTCAACTAGACGATTTC 57.633 33.333 0.00 0.00 35.61 2.17
3253 4481 8.651391 TTTTGTACTTCAACTAGACGATTTCA 57.349 30.769 0.00 0.00 35.61 2.69
3254 4482 8.827177 TTTGTACTTCAACTAGACGATTTCAT 57.173 30.769 0.00 0.00 35.61 2.57
3255 4483 7.812309 TGTACTTCAACTAGACGATTTCATG 57.188 36.000 0.00 0.00 0.00 3.07
3256 4484 6.811665 TGTACTTCAACTAGACGATTTCATGG 59.188 38.462 0.00 0.00 0.00 3.66
3257 4485 5.178797 ACTTCAACTAGACGATTTCATGGG 58.821 41.667 0.00 0.00 0.00 4.00
3258 4486 3.531538 TCAACTAGACGATTTCATGGGC 58.468 45.455 0.00 0.00 0.00 5.36
3259 4487 3.055458 TCAACTAGACGATTTCATGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
3260 4488 3.627395 ACTAGACGATTTCATGGGCAA 57.373 42.857 0.00 0.00 0.00 4.52
3261 4489 4.156455 ACTAGACGATTTCATGGGCAAT 57.844 40.909 0.00 0.00 0.00 3.56
3262 4490 3.879295 ACTAGACGATTTCATGGGCAATG 59.121 43.478 0.00 0.00 37.66 2.82
3263 4491 1.406539 AGACGATTTCATGGGCAATGC 59.593 47.619 0.00 0.00 36.11 3.56
3264 4492 1.134753 GACGATTTCATGGGCAATGCA 59.865 47.619 7.79 0.00 36.11 3.96
3265 4493 1.758280 ACGATTTCATGGGCAATGCAT 59.242 42.857 7.79 0.00 36.11 3.96
3266 4494 2.131972 CGATTTCATGGGCAATGCATG 58.868 47.619 7.79 3.18 36.11 4.06
3267 4495 2.482316 CGATTTCATGGGCAATGCATGT 60.482 45.455 7.79 0.00 36.11 3.21
3268 4496 3.243468 CGATTTCATGGGCAATGCATGTA 60.243 43.478 7.79 0.00 36.11 2.29
3269 4497 4.695396 GATTTCATGGGCAATGCATGTAA 58.305 39.130 7.79 3.92 36.11 2.41
3270 4498 4.757019 TTTCATGGGCAATGCATGTAAT 57.243 36.364 7.79 0.00 36.11 1.89
3271 4499 5.866159 TTTCATGGGCAATGCATGTAATA 57.134 34.783 7.79 0.00 36.11 0.98
3272 4500 5.456548 TTCATGGGCAATGCATGTAATAG 57.543 39.130 7.79 0.00 36.11 1.73
3273 4501 4.472496 TCATGGGCAATGCATGTAATAGT 58.528 39.130 7.79 0.00 36.11 2.12
3274 4502 5.629125 TCATGGGCAATGCATGTAATAGTA 58.371 37.500 7.79 0.00 36.11 1.82
3275 4503 6.067350 TCATGGGCAATGCATGTAATAGTAA 58.933 36.000 7.79 0.00 36.11 2.24
3276 4504 5.766150 TGGGCAATGCATGTAATAGTAAC 57.234 39.130 7.79 0.00 0.00 2.50
3277 4505 5.445069 TGGGCAATGCATGTAATAGTAACT 58.555 37.500 7.79 0.00 0.00 2.24
3278 4506 5.299028 TGGGCAATGCATGTAATAGTAACTG 59.701 40.000 7.79 0.00 0.00 3.16
3279 4507 5.530915 GGGCAATGCATGTAATAGTAACTGA 59.469 40.000 7.79 0.00 0.00 3.41
3280 4508 6.039270 GGGCAATGCATGTAATAGTAACTGAA 59.961 38.462 7.79 0.00 0.00 3.02
3281 4509 7.255590 GGGCAATGCATGTAATAGTAACTGAAT 60.256 37.037 7.79 0.00 0.00 2.57
3282 4510 8.137437 GGCAATGCATGTAATAGTAACTGAATT 58.863 33.333 7.79 0.00 0.00 2.17
3283 4511 8.961092 GCAATGCATGTAATAGTAACTGAATTG 58.039 33.333 0.00 8.56 0.00 2.32
3300 4528 9.574516 AACTGAATTGTTTTGATAGGAGTAAGT 57.425 29.630 0.00 0.00 0.00 2.24
3301 4529 9.220767 ACTGAATTGTTTTGATAGGAGTAAGTC 57.779 33.333 0.00 0.00 0.00 3.01
3302 4530 9.442047 CTGAATTGTTTTGATAGGAGTAAGTCT 57.558 33.333 0.00 0.00 0.00 3.24
3303 4531 9.436957 TGAATTGTTTTGATAGGAGTAAGTCTC 57.563 33.333 0.00 0.00 42.07 3.36
3304 4532 9.436957 GAATTGTTTTGATAGGAGTAAGTCTCA 57.563 33.333 0.00 0.00 44.40 3.27
3305 4533 9.965902 AATTGTTTTGATAGGAGTAAGTCTCAT 57.034 29.630 0.00 0.00 44.40 2.90
3308 4536 9.256228 TGTTTTGATAGGAGTAAGTCTCATAGT 57.744 33.333 0.00 0.00 41.66 2.12
3313 4541 9.727859 TGATAGGAGTAAGTCTCATAGTATCAC 57.272 37.037 0.00 0.00 41.66 3.06
3314 4542 9.169592 GATAGGAGTAAGTCTCATAGTATCACC 57.830 40.741 0.00 0.00 41.66 4.02
3315 4543 6.912426 AGGAGTAAGTCTCATAGTATCACCA 58.088 40.000 0.00 0.00 44.40 4.17
3316 4544 7.531317 AGGAGTAAGTCTCATAGTATCACCAT 58.469 38.462 0.00 0.00 44.40 3.55
3317 4545 7.450014 AGGAGTAAGTCTCATAGTATCACCATG 59.550 40.741 0.00 0.00 44.40 3.66
3318 4546 7.448777 GGAGTAAGTCTCATAGTATCACCATGA 59.551 40.741 0.00 0.00 44.40 3.07
3319 4547 8.768501 AGTAAGTCTCATAGTATCACCATGAA 57.231 34.615 0.00 0.00 0.00 2.57
3320 4548 8.855110 AGTAAGTCTCATAGTATCACCATGAAG 58.145 37.037 0.00 0.00 0.00 3.02
3321 4549 7.904558 AAGTCTCATAGTATCACCATGAAGA 57.095 36.000 0.00 0.00 0.00 2.87
3322 4550 8.489676 AAGTCTCATAGTATCACCATGAAGAT 57.510 34.615 0.00 0.00 0.00 2.40
3323 4551 8.121305 AGTCTCATAGTATCACCATGAAGATC 57.879 38.462 0.00 0.00 0.00 2.75
3324 4552 7.026562 GTCTCATAGTATCACCATGAAGATCG 58.973 42.308 0.00 0.00 0.00 3.69
3325 4553 5.714047 TCATAGTATCACCATGAAGATCGC 58.286 41.667 0.00 0.00 0.00 4.58
3326 4554 3.018598 AGTATCACCATGAAGATCGCG 57.981 47.619 0.00 0.00 0.00 5.87
3327 4555 2.623416 AGTATCACCATGAAGATCGCGA 59.377 45.455 13.09 13.09 0.00 5.87
3328 4556 2.602257 ATCACCATGAAGATCGCGAA 57.398 45.000 15.24 0.00 0.00 4.70
3329 4557 2.378445 TCACCATGAAGATCGCGAAA 57.622 45.000 15.24 0.00 0.00 3.46
3330 4558 2.694213 TCACCATGAAGATCGCGAAAA 58.306 42.857 15.24 0.00 0.00 2.29
3331 4559 3.070748 TCACCATGAAGATCGCGAAAAA 58.929 40.909 15.24 0.00 0.00 1.94
3353 4581 7.718334 AAAAATCCCGAAGTATCCTTGATTT 57.282 32.000 0.00 0.00 34.67 2.17
3354 4582 6.699575 AAATCCCGAAGTATCCTTGATTTG 57.300 37.500 0.00 0.00 33.23 2.32
3355 4583 4.837093 TCCCGAAGTATCCTTGATTTGT 57.163 40.909 0.00 0.00 0.00 2.83
3356 4584 5.174037 TCCCGAAGTATCCTTGATTTGTT 57.826 39.130 0.00 0.00 0.00 2.83
3357 4585 4.941263 TCCCGAAGTATCCTTGATTTGTTG 59.059 41.667 0.00 0.00 0.00 3.33
3358 4586 4.700213 CCCGAAGTATCCTTGATTTGTTGT 59.300 41.667 0.00 0.00 0.00 3.32
3359 4587 5.183140 CCCGAAGTATCCTTGATTTGTTGTT 59.817 40.000 0.00 0.00 0.00 2.83
3360 4588 6.086222 CCGAAGTATCCTTGATTTGTTGTTG 58.914 40.000 0.00 0.00 0.00 3.33
3361 4589 6.086222 CGAAGTATCCTTGATTTGTTGTTGG 58.914 40.000 0.00 0.00 0.00 3.77
3362 4590 6.072728 CGAAGTATCCTTGATTTGTTGTTGGA 60.073 38.462 0.00 0.00 0.00 3.53
3363 4591 6.824305 AGTATCCTTGATTTGTTGTTGGAG 57.176 37.500 0.00 0.00 0.00 3.86
3364 4592 6.542821 AGTATCCTTGATTTGTTGTTGGAGA 58.457 36.000 0.00 0.00 0.00 3.71
3365 4593 7.004086 AGTATCCTTGATTTGTTGTTGGAGAA 58.996 34.615 0.00 0.00 0.00 2.87
3366 4594 6.729690 ATCCTTGATTTGTTGTTGGAGAAA 57.270 33.333 0.00 0.00 0.00 2.52
3367 4595 5.901552 TCCTTGATTTGTTGTTGGAGAAAC 58.098 37.500 0.00 0.00 39.41 2.78
3368 4596 5.656416 TCCTTGATTTGTTGTTGGAGAAACT 59.344 36.000 0.00 0.00 39.70 2.66
3369 4597 5.750067 CCTTGATTTGTTGTTGGAGAAACTG 59.250 40.000 0.00 0.00 39.70 3.16
3370 4598 5.913137 TGATTTGTTGTTGGAGAAACTGT 57.087 34.783 0.00 0.00 39.70 3.55
3371 4599 7.397892 TTGATTTGTTGTTGGAGAAACTGTA 57.602 32.000 0.00 0.00 39.70 2.74
3372 4600 7.397892 TGATTTGTTGTTGGAGAAACTGTAA 57.602 32.000 0.00 0.00 39.70 2.41
3373 4601 8.006298 TGATTTGTTGTTGGAGAAACTGTAAT 57.994 30.769 0.00 0.00 39.70 1.89
3374 4602 8.474025 TGATTTGTTGTTGGAGAAACTGTAATT 58.526 29.630 0.00 0.00 39.70 1.40
3375 4603 9.313118 GATTTGTTGTTGGAGAAACTGTAATTT 57.687 29.630 0.00 0.00 39.70 1.82
3376 4604 9.665719 ATTTGTTGTTGGAGAAACTGTAATTTT 57.334 25.926 0.00 0.00 39.70 1.82
3377 4605 8.696410 TTGTTGTTGGAGAAACTGTAATTTTC 57.304 30.769 0.00 0.00 39.70 2.29
3378 4606 7.262048 TGTTGTTGGAGAAACTGTAATTTTCC 58.738 34.615 0.00 0.00 39.70 3.13
3379 4607 7.123547 TGTTGTTGGAGAAACTGTAATTTTCCT 59.876 33.333 4.15 0.00 39.70 3.36
3380 4608 7.272037 TGTTGGAGAAACTGTAATTTTCCTC 57.728 36.000 4.15 0.00 39.70 3.71
3381 4609 6.831353 TGTTGGAGAAACTGTAATTTTCCTCA 59.169 34.615 4.15 1.99 39.70 3.86
3382 4610 7.013274 TGTTGGAGAAACTGTAATTTTCCTCAG 59.987 37.037 4.15 0.00 39.70 3.35
3383 4611 6.837312 TGGAGAAACTGTAATTTTCCTCAGA 58.163 36.000 0.00 0.00 34.07 3.27
3384 4612 7.287061 TGGAGAAACTGTAATTTTCCTCAGAA 58.713 34.615 0.00 0.00 34.07 3.02
3385 4613 7.777910 TGGAGAAACTGTAATTTTCCTCAGAAA 59.222 33.333 0.00 0.00 40.26 2.52
3386 4614 8.293157 GGAGAAACTGTAATTTTCCTCAGAAAG 58.707 37.037 0.00 0.00 42.78 2.62
3387 4615 8.980481 AGAAACTGTAATTTTCCTCAGAAAGA 57.020 30.769 0.00 0.00 42.78 2.52
3388 4616 9.408648 AGAAACTGTAATTTTCCTCAGAAAGAA 57.591 29.630 0.00 0.00 42.78 2.52
3389 4617 9.452065 GAAACTGTAATTTTCCTCAGAAAGAAC 57.548 33.333 0.00 0.00 42.78 3.01
3390 4618 8.519799 AACTGTAATTTTCCTCAGAAAGAACA 57.480 30.769 0.00 0.00 42.78 3.18
3391 4619 8.697507 ACTGTAATTTTCCTCAGAAAGAACAT 57.302 30.769 0.00 0.00 42.78 2.71
3392 4620 9.793259 ACTGTAATTTTCCTCAGAAAGAACATA 57.207 29.630 0.00 0.00 42.78 2.29
3394 4622 9.793259 TGTAATTTTCCTCAGAAAGAACATACT 57.207 29.630 0.00 0.00 42.78 2.12
3400 4628 9.529823 TTTCCTCAGAAAGAACATACTACTAGA 57.470 33.333 0.00 0.00 37.07 2.43
3401 4629 8.508883 TCCTCAGAAAGAACATACTACTAGAC 57.491 38.462 0.00 0.00 0.00 2.59
3402 4630 8.330247 TCCTCAGAAAGAACATACTACTAGACT 58.670 37.037 0.00 0.00 0.00 3.24
3403 4631 8.617809 CCTCAGAAAGAACATACTACTAGACTC 58.382 40.741 0.00 0.00 0.00 3.36
3404 4632 9.391006 CTCAGAAAGAACATACTACTAGACTCT 57.609 37.037 0.00 0.00 0.00 3.24
3405 4633 9.386010 TCAGAAAGAACATACTACTAGACTCTC 57.614 37.037 0.00 0.00 0.00 3.20
3406 4634 9.168451 CAGAAAGAACATACTACTAGACTCTCA 57.832 37.037 0.00 0.00 0.00 3.27
3407 4635 9.391006 AGAAAGAACATACTACTAGACTCTCAG 57.609 37.037 0.00 0.00 0.00 3.35
3408 4636 9.169592 GAAAGAACATACTACTAGACTCTCAGT 57.830 37.037 0.00 0.00 0.00 3.41
3409 4637 8.726870 AAGAACATACTACTAGACTCTCAGTC 57.273 38.462 0.00 0.00 45.38 3.51
3410 4638 7.277396 AGAACATACTACTAGACTCTCAGTCC 58.723 42.308 0.00 0.00 46.18 3.85
3411 4639 6.818281 ACATACTACTAGACTCTCAGTCCT 57.182 41.667 0.00 0.00 46.18 3.85
3412 4640 6.823497 ACATACTACTAGACTCTCAGTCCTC 58.177 44.000 0.00 0.00 46.18 3.71
3413 4641 6.384595 ACATACTACTAGACTCTCAGTCCTCA 59.615 42.308 0.00 0.00 46.18 3.86
3414 4642 5.353394 ACTACTAGACTCTCAGTCCTCAG 57.647 47.826 0.00 0.00 46.18 3.35
3415 4643 3.644966 ACTAGACTCTCAGTCCTCAGG 57.355 52.381 0.00 0.00 46.18 3.86
3416 4644 2.916934 ACTAGACTCTCAGTCCTCAGGT 59.083 50.000 0.00 0.00 46.18 4.00
3417 4645 2.214376 AGACTCTCAGTCCTCAGGTG 57.786 55.000 0.00 0.00 46.18 4.00
3418 4646 0.530288 GACTCTCAGTCCTCAGGTGC 59.470 60.000 0.00 0.00 39.28 5.01
3419 4647 0.178950 ACTCTCAGTCCTCAGGTGCA 60.179 55.000 0.00 0.00 0.00 4.57
3420 4648 0.531657 CTCTCAGTCCTCAGGTGCAG 59.468 60.000 0.00 0.00 0.00 4.41
3421 4649 1.079266 CTCAGTCCTCAGGTGCAGC 60.079 63.158 8.11 8.11 0.00 5.25
3422 4650 2.046507 CAGTCCTCAGGTGCAGCC 60.047 66.667 13.29 4.65 37.58 4.85
3423 4651 2.527624 AGTCCTCAGGTGCAGCCA 60.528 61.111 13.29 0.00 40.61 4.75
3424 4652 2.046507 GTCCTCAGGTGCAGCCAG 60.047 66.667 13.29 8.88 40.61 4.85
3425 4653 3.324930 TCCTCAGGTGCAGCCAGG 61.325 66.667 20.72 20.72 40.61 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.593644 CGTCATCGATGTTTAGATTGGTATACA 59.406 37.037 24.09 0.00 39.71 2.29
1 2 7.410513 GCGTCATCGATGTTTAGATTGGTATAC 60.411 40.741 24.09 9.26 39.71 1.47
2 3 6.584942 GCGTCATCGATGTTTAGATTGGTATA 59.415 38.462 24.09 0.00 39.71 1.47
3 4 5.405571 GCGTCATCGATGTTTAGATTGGTAT 59.594 40.000 24.09 0.00 39.71 2.73
4 5 4.743151 GCGTCATCGATGTTTAGATTGGTA 59.257 41.667 24.09 0.00 39.71 3.25
5 6 3.555956 GCGTCATCGATGTTTAGATTGGT 59.444 43.478 24.09 0.00 39.71 3.67
6 7 3.555547 TGCGTCATCGATGTTTAGATTGG 59.444 43.478 24.09 6.24 39.71 3.16
7 8 4.268644 ACTGCGTCATCGATGTTTAGATTG 59.731 41.667 24.09 10.84 39.71 2.67
8 9 4.433615 ACTGCGTCATCGATGTTTAGATT 58.566 39.130 24.09 3.17 39.71 2.40
9 10 4.046938 ACTGCGTCATCGATGTTTAGAT 57.953 40.909 24.09 5.80 39.71 1.98
10 11 3.503827 ACTGCGTCATCGATGTTTAGA 57.496 42.857 24.09 2.28 39.71 2.10
11 12 5.696260 TTTACTGCGTCATCGATGTTTAG 57.304 39.130 24.09 18.68 39.71 1.85
12 13 6.533723 AGAATTTACTGCGTCATCGATGTTTA 59.466 34.615 24.09 3.08 39.71 2.01
13 14 5.351465 AGAATTTACTGCGTCATCGATGTTT 59.649 36.000 24.09 6.81 39.71 2.83
14 15 4.870426 AGAATTTACTGCGTCATCGATGTT 59.130 37.500 24.09 7.70 39.71 2.71
15 16 4.433615 AGAATTTACTGCGTCATCGATGT 58.566 39.130 24.09 7.21 39.71 3.06
16 17 6.520175 CATAGAATTTACTGCGTCATCGATG 58.480 40.000 19.61 19.61 39.71 3.84
17 18 5.119279 GCATAGAATTTACTGCGTCATCGAT 59.881 40.000 0.00 0.00 39.71 3.59
18 19 4.444388 GCATAGAATTTACTGCGTCATCGA 59.556 41.667 0.00 0.00 39.71 3.59
19 20 4.692135 GCATAGAATTTACTGCGTCATCG 58.308 43.478 0.00 0.00 40.37 3.84
26 27 1.069906 CCCGCGCATAGAATTTACTGC 60.070 52.381 8.75 0.00 0.00 4.40
27 28 2.476619 CTCCCGCGCATAGAATTTACTG 59.523 50.000 8.75 0.00 0.00 2.74
28 29 2.364324 TCTCCCGCGCATAGAATTTACT 59.636 45.455 8.75 0.00 0.00 2.24
29 30 2.731976 CTCTCCCGCGCATAGAATTTAC 59.268 50.000 8.75 0.00 0.00 2.01
30 31 2.288825 CCTCTCCCGCGCATAGAATTTA 60.289 50.000 8.75 0.00 0.00 1.40
31 32 1.541233 CCTCTCCCGCGCATAGAATTT 60.541 52.381 8.75 0.00 0.00 1.82
32 33 0.034059 CCTCTCCCGCGCATAGAATT 59.966 55.000 8.75 0.00 0.00 2.17
33 34 1.668294 CCTCTCCCGCGCATAGAAT 59.332 57.895 8.75 0.00 0.00 2.40
34 35 2.498941 CCCTCTCCCGCGCATAGAA 61.499 63.158 8.75 0.00 0.00 2.10
35 36 2.912542 CCCTCTCCCGCGCATAGA 60.913 66.667 8.75 5.65 0.00 1.98
36 37 4.671569 GCCCTCTCCCGCGCATAG 62.672 72.222 8.75 0.52 0.00 2.23
43 44 3.522731 CACTCTCGCCCTCTCCCG 61.523 72.222 0.00 0.00 0.00 5.14
44 45 3.151022 CCACTCTCGCCCTCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
45 46 2.363147 ACCACTCTCGCCCTCTCC 60.363 66.667 0.00 0.00 0.00 3.71
46 47 2.716017 CCACCACTCTCGCCCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
47 48 2.681778 CCACCACTCTCGCCCTCT 60.682 66.667 0.00 0.00 0.00 3.69
48 49 2.997897 ACCACCACTCTCGCCCTC 60.998 66.667 0.00 0.00 0.00 4.30
49 50 2.997897 GACCACCACTCTCGCCCT 60.998 66.667 0.00 0.00 0.00 5.19
50 51 4.436998 CGACCACCACTCTCGCCC 62.437 72.222 0.00 0.00 0.00 6.13
51 52 2.711922 ATCGACCACCACTCTCGCC 61.712 63.158 0.00 0.00 0.00 5.54
52 53 1.517257 CATCGACCACCACTCTCGC 60.517 63.158 0.00 0.00 0.00 5.03
53 54 1.139734 CCATCGACCACCACTCTCG 59.860 63.158 0.00 0.00 0.00 4.04
54 55 0.108615 CACCATCGACCACCACTCTC 60.109 60.000 0.00 0.00 0.00 3.20
55 56 0.541998 TCACCATCGACCACCACTCT 60.542 55.000 0.00 0.00 0.00 3.24
56 57 0.537188 ATCACCATCGACCACCACTC 59.463 55.000 0.00 0.00 0.00 3.51
57 58 0.984230 AATCACCATCGACCACCACT 59.016 50.000 0.00 0.00 0.00 4.00
58 59 1.737793 GAAATCACCATCGACCACCAC 59.262 52.381 0.00 0.00 0.00 4.16
59 60 1.349357 TGAAATCACCATCGACCACCA 59.651 47.619 0.00 0.00 0.00 4.17
60 61 2.107950 TGAAATCACCATCGACCACC 57.892 50.000 0.00 0.00 0.00 4.61
61 62 2.223340 GCATGAAATCACCATCGACCAC 60.223 50.000 0.00 0.00 0.00 4.16
62 63 2.016318 GCATGAAATCACCATCGACCA 58.984 47.619 0.00 0.00 0.00 4.02
63 64 2.032550 CAGCATGAAATCACCATCGACC 59.967 50.000 0.00 0.00 39.69 4.79
64 65 2.032550 CCAGCATGAAATCACCATCGAC 59.967 50.000 0.00 0.00 39.69 4.20
65 66 2.291365 CCAGCATGAAATCACCATCGA 58.709 47.619 0.00 0.00 39.69 3.59
66 67 1.268896 GCCAGCATGAAATCACCATCG 60.269 52.381 0.00 0.00 39.69 3.84
67 68 1.268896 CGCCAGCATGAAATCACCATC 60.269 52.381 0.00 0.00 39.69 3.51
68 69 0.742505 CGCCAGCATGAAATCACCAT 59.257 50.000 0.00 0.00 39.69 3.55
69 70 0.322366 TCGCCAGCATGAAATCACCA 60.322 50.000 0.00 0.00 39.69 4.17
70 71 0.379669 CTCGCCAGCATGAAATCACC 59.620 55.000 0.00 0.00 39.69 4.02
71 72 1.372582 TCTCGCCAGCATGAAATCAC 58.627 50.000 0.00 0.00 39.69 3.06
72 73 1.944709 CATCTCGCCAGCATGAAATCA 59.055 47.619 0.00 0.00 39.69 2.57
73 74 1.945394 ACATCTCGCCAGCATGAAATC 59.055 47.619 0.00 0.00 39.69 2.17
74 75 1.674441 CACATCTCGCCAGCATGAAAT 59.326 47.619 0.00 0.00 39.69 2.17
75 76 1.089112 CACATCTCGCCAGCATGAAA 58.911 50.000 0.00 0.00 39.69 2.69
76 77 0.036105 ACACATCTCGCCAGCATGAA 60.036 50.000 0.00 0.00 39.69 2.57
77 78 0.036105 AACACATCTCGCCAGCATGA 60.036 50.000 0.00 0.00 39.69 3.07
78 79 0.098200 CAACACATCTCGCCAGCATG 59.902 55.000 0.00 0.00 0.00 4.06
79 80 1.651240 GCAACACATCTCGCCAGCAT 61.651 55.000 0.00 0.00 0.00 3.79
80 81 2.327343 GCAACACATCTCGCCAGCA 61.327 57.895 0.00 0.00 0.00 4.41
81 82 2.482374 GCAACACATCTCGCCAGC 59.518 61.111 0.00 0.00 0.00 4.85
82 83 3.181367 GGCAACACATCTCGCCAG 58.819 61.111 0.00 0.00 44.25 4.85
84 85 0.940126 CATAGGCAACACATCTCGCC 59.060 55.000 0.00 0.00 45.23 5.54
85 86 1.939974 TCATAGGCAACACATCTCGC 58.060 50.000 0.00 0.00 41.41 5.03
86 87 4.944962 TTTTCATAGGCAACACATCTCG 57.055 40.909 0.00 0.00 41.41 4.04
87 88 8.072567 GTCATATTTTCATAGGCAACACATCTC 58.927 37.037 0.00 0.00 41.41 2.75
88 89 7.013655 GGTCATATTTTCATAGGCAACACATCT 59.986 37.037 0.00 0.00 41.41 2.90
89 90 7.141363 GGTCATATTTTCATAGGCAACACATC 58.859 38.462 0.00 0.00 41.41 3.06
90 91 6.238731 CGGTCATATTTTCATAGGCAACACAT 60.239 38.462 0.00 0.00 41.41 3.21
91 92 5.065859 CGGTCATATTTTCATAGGCAACACA 59.934 40.000 0.00 0.00 41.41 3.72
92 93 5.295787 TCGGTCATATTTTCATAGGCAACAC 59.704 40.000 0.00 0.00 41.41 3.32
93 94 5.432645 TCGGTCATATTTTCATAGGCAACA 58.567 37.500 0.00 0.00 41.41 3.33
94 95 6.199393 GTTCGGTCATATTTTCATAGGCAAC 58.801 40.000 0.00 0.00 0.00 4.17
95 96 5.298276 GGTTCGGTCATATTTTCATAGGCAA 59.702 40.000 0.00 0.00 0.00 4.52
96 97 4.819630 GGTTCGGTCATATTTTCATAGGCA 59.180 41.667 0.00 0.00 0.00 4.75
97 98 5.063880 AGGTTCGGTCATATTTTCATAGGC 58.936 41.667 0.00 0.00 0.00 3.93
98 99 6.525629 AGAGGTTCGGTCATATTTTCATAGG 58.474 40.000 0.00 0.00 0.00 2.57
99 100 6.363626 CGAGAGGTTCGGTCATATTTTCATAG 59.636 42.308 0.00 0.00 45.54 2.23
100 101 6.213677 CGAGAGGTTCGGTCATATTTTCATA 58.786 40.000 0.00 0.00 45.54 2.15
101 102 5.050490 CGAGAGGTTCGGTCATATTTTCAT 58.950 41.667 0.00 0.00 45.54 2.57
102 103 4.430007 CGAGAGGTTCGGTCATATTTTCA 58.570 43.478 0.00 0.00 45.54 2.69
126 127 0.319813 AACATGCCAAAAGCTTCGGC 60.320 50.000 25.74 25.74 46.43 5.54
127 128 1.000385 TCAACATGCCAAAAGCTTCGG 60.000 47.619 0.00 4.81 44.23 4.30
128 129 2.030893 TCTCAACATGCCAAAAGCTTCG 60.031 45.455 0.00 0.00 44.23 3.79
129 130 3.648339 TCTCAACATGCCAAAAGCTTC 57.352 42.857 0.00 0.00 44.23 3.86
130 131 3.322828 ACATCTCAACATGCCAAAAGCTT 59.677 39.130 0.00 0.00 44.23 3.74
131 132 2.895404 ACATCTCAACATGCCAAAAGCT 59.105 40.909 0.00 0.00 44.23 3.74
132 133 3.308438 ACATCTCAACATGCCAAAAGC 57.692 42.857 0.00 0.00 44.14 3.51
133 134 5.396484 CACTACATCTCAACATGCCAAAAG 58.604 41.667 0.00 0.00 0.00 2.27
134 135 4.321156 GCACTACATCTCAACATGCCAAAA 60.321 41.667 0.00 0.00 0.00 2.44
135 136 3.191162 GCACTACATCTCAACATGCCAAA 59.809 43.478 0.00 0.00 0.00 3.28
136 137 2.749076 GCACTACATCTCAACATGCCAA 59.251 45.455 0.00 0.00 0.00 4.52
137 138 2.358957 GCACTACATCTCAACATGCCA 58.641 47.619 0.00 0.00 0.00 4.92
138 139 1.672881 GGCACTACATCTCAACATGCC 59.327 52.381 0.00 0.00 43.89 4.40
139 140 2.353889 CAGGCACTACATCTCAACATGC 59.646 50.000 0.00 0.00 36.02 4.06
140 141 3.865446 TCAGGCACTACATCTCAACATG 58.135 45.455 0.00 0.00 36.02 3.21
141 142 3.118482 CCTCAGGCACTACATCTCAACAT 60.118 47.826 0.00 0.00 36.02 2.71
142 143 2.234661 CCTCAGGCACTACATCTCAACA 59.765 50.000 0.00 0.00 36.02 3.33
143 144 2.898705 CCTCAGGCACTACATCTCAAC 58.101 52.381 0.00 0.00 36.02 3.18
156 157 1.298859 ACATTTTCGTCGCCTCAGGC 61.299 55.000 5.22 5.22 46.75 4.85
157 158 0.443869 CACATTTTCGTCGCCTCAGG 59.556 55.000 0.00 0.00 0.00 3.86
158 159 0.443869 CCACATTTTCGTCGCCTCAG 59.556 55.000 0.00 0.00 0.00 3.35
159 160 0.034198 TCCACATTTTCGTCGCCTCA 59.966 50.000 0.00 0.00 0.00 3.86
160 161 1.153353 TTCCACATTTTCGTCGCCTC 58.847 50.000 0.00 0.00 0.00 4.70
161 162 1.535462 CTTTCCACATTTTCGTCGCCT 59.465 47.619 0.00 0.00 0.00 5.52
162 163 1.963747 CTTTCCACATTTTCGTCGCC 58.036 50.000 0.00 0.00 0.00 5.54
163 164 1.327507 GCTTTCCACATTTTCGTCGC 58.672 50.000 0.00 0.00 0.00 5.19
164 165 2.679355 TGCTTTCCACATTTTCGTCG 57.321 45.000 0.00 0.00 0.00 5.12
165 166 6.034898 CCATTATTGCTTTCCACATTTTCGTC 59.965 38.462 0.00 0.00 0.00 4.20
166 167 5.868801 CCATTATTGCTTTCCACATTTTCGT 59.131 36.000 0.00 0.00 0.00 3.85
167 168 5.291614 CCCATTATTGCTTTCCACATTTTCG 59.708 40.000 0.00 0.00 0.00 3.46
178 179 6.670695 AGACTTTTCACCCATTATTGCTTT 57.329 33.333 0.00 0.00 0.00 3.51
184 185 5.103515 AGCCCATAGACTTTTCACCCATTAT 60.104 40.000 0.00 0.00 0.00 1.28
188 189 1.992557 AGCCCATAGACTTTTCACCCA 59.007 47.619 0.00 0.00 0.00 4.51
222 223 3.226346 TGAACCGTTTCCTACATCTCG 57.774 47.619 0.00 0.00 0.00 4.04
231 232 4.018649 TCGAAAGTTTTGAACCGTTTCC 57.981 40.909 2.86 0.00 0.00 3.13
236 237 3.334272 AAGCTCGAAAGTTTTGAACCG 57.666 42.857 6.98 0.00 0.00 4.44
250 251 2.540101 CCGCCTATAGAAACAAAGCTCG 59.460 50.000 0.00 0.00 0.00 5.03
262 263 2.675317 GCATTAGCACTCCCGCCTATAG 60.675 54.545 0.00 0.00 41.58 1.31
288 289 2.558359 GTTCTTTTGCATAGCAGTGGGT 59.442 45.455 0.00 0.00 40.61 4.51
294 295 7.466746 AAATTAGAGGTTCTTTTGCATAGCA 57.533 32.000 0.00 0.00 36.47 3.49
343 344 7.502895 AGCTATAGTTCGGAAAGTCAGAGATTA 59.497 37.037 0.84 0.00 0.00 1.75
350 351 4.181578 GCAAGCTATAGTTCGGAAAGTCA 58.818 43.478 0.84 0.00 0.00 3.41
357 358 3.119291 CTGAGTGCAAGCTATAGTTCGG 58.881 50.000 0.84 0.00 0.00 4.30
384 385 1.001406 ACTTTCTTCGGTCAGAGGCAG 59.999 52.381 0.00 0.00 0.00 4.85
395 396 0.985549 CGCTCTCCGAACTTTCTTCG 59.014 55.000 0.00 0.00 40.02 3.79
405 406 1.402259 CTTCTAAGCTTCGCTCTCCGA 59.598 52.381 0.00 0.00 45.77 4.55
432 433 0.614415 TTGCACCATTGTCATCCCCC 60.614 55.000 0.00 0.00 0.00 5.40
434 435 0.819582 CCTTGCACCATTGTCATCCC 59.180 55.000 0.00 0.00 0.00 3.85
442 443 3.119029 GCATGACATAACCTTGCACCATT 60.119 43.478 0.00 0.00 35.54 3.16
453 454 2.902705 TAGGACCCGCATGACATAAC 57.097 50.000 0.00 0.00 0.00 1.89
459 460 1.837439 AGTTGAATAGGACCCGCATGA 59.163 47.619 0.00 0.00 0.00 3.07
489 490 3.164026 GGTACGGGACCCAAATGAC 57.836 57.895 12.15 0.02 43.25 3.06
501 502 4.037208 CAGTATACCACTAACAGGGTACGG 59.963 50.000 0.00 0.00 42.12 4.02
503 504 7.056635 TCTACAGTATACCACTAACAGGGTAC 58.943 42.308 0.00 0.00 42.12 3.34
505 506 6.083487 TCTACAGTATACCACTAACAGGGT 57.917 41.667 0.00 0.00 41.21 4.34
518 519 8.304596 CGGCTTTCCATTATCTTCTACAGTATA 58.695 37.037 0.00 0.00 0.00 1.47
522 523 4.752101 CCGGCTTTCCATTATCTTCTACAG 59.248 45.833 0.00 0.00 0.00 2.74
523 524 4.163458 ACCGGCTTTCCATTATCTTCTACA 59.837 41.667 0.00 0.00 0.00 2.74
524 525 4.704965 ACCGGCTTTCCATTATCTTCTAC 58.295 43.478 0.00 0.00 0.00 2.59
559 560 8.385491 TGATATGCAAATTACTACCAGGATGAT 58.615 33.333 0.00 0.00 39.69 2.45
573 574 5.653507 AGTGCGAAACATGATATGCAAATT 58.346 33.333 0.00 0.00 33.67 1.82
622 628 5.546526 AGAGCTACTCACTCTTGGAAAAAG 58.453 41.667 0.00 0.00 41.79 2.27
649 655 2.224549 CCGCCGAAATTTTGTGTGTCTA 59.775 45.455 4.72 0.00 0.00 2.59
651 657 1.404477 CCGCCGAAATTTTGTGTGTC 58.596 50.000 4.72 0.00 0.00 3.67
654 660 0.312729 GACCCGCCGAAATTTTGTGT 59.687 50.000 4.72 0.00 0.00 3.72
688 694 4.523083 TGTTCCAAACTGTTAGCAAGACT 58.477 39.130 0.00 0.00 0.00 3.24
728 734 0.250338 AGACGGTCCTTGCTCCAAAC 60.250 55.000 4.14 0.00 0.00 2.93
729 735 0.250295 CAGACGGTCCTTGCTCCAAA 60.250 55.000 4.14 0.00 0.00 3.28
938 953 1.478916 GAAGGGGGAAACGAGAGAGAG 59.521 57.143 0.00 0.00 0.00 3.20
939 954 1.558233 GAAGGGGGAAACGAGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10
1029 1044 1.612442 AGCCGCCACCTTCTTAGGA 60.612 57.895 0.00 0.00 45.05 2.94
1050 1065 1.012486 GCAGGTTAACCAGGTCGACG 61.012 60.000 26.26 0.00 38.89 5.12
1131 1146 1.005037 GATGTGTGACCAGACGCCA 60.005 57.895 0.00 0.00 0.00 5.69
1196 1211 0.882927 TTCCGAGGCGACCAAACAAG 60.883 55.000 0.00 0.00 0.00 3.16
1284 1299 1.977188 GAAACGGAATTTCAAGGGCG 58.023 50.000 0.00 0.00 45.32 6.13
1350 1365 2.279741 TGAGTAGGATCAAATGCGTGC 58.720 47.619 0.00 0.00 0.00 5.34
1365 1380 5.012148 GGCAAATTCCTATCCTAGCTGAGTA 59.988 44.000 0.00 0.00 0.00 2.59
1406 1421 1.985159 AGCCATTAGGTGAGTTGGTCA 59.015 47.619 0.00 0.00 37.19 4.02
1417 1432 0.179045 ACTAAGCCGCAGCCATTAGG 60.179 55.000 6.06 0.00 41.25 2.69
1426 1441 0.815095 TCTGATCGAACTAAGCCGCA 59.185 50.000 0.00 0.00 0.00 5.69
1438 1453 0.036952 ACTGCAGGTGGTTCTGATCG 60.037 55.000 19.93 0.00 36.93 3.69
1485 1500 6.127730 GCTATAGCTCAGACTTAAGATCCTCC 60.128 46.154 17.75 0.00 38.21 4.30
1486 1501 6.852664 GCTATAGCTCAGACTTAAGATCCTC 58.147 44.000 17.75 0.00 38.21 3.71
1487 1502 6.834168 GCTATAGCTCAGACTTAAGATCCT 57.166 41.667 17.75 0.31 38.21 3.24
1503 1518 2.695666 TCCTCCAACACTGAGCTATAGC 59.304 50.000 17.33 17.33 42.49 2.97
1504 1519 4.832266 AGATCCTCCAACACTGAGCTATAG 59.168 45.833 0.00 0.00 0.00 1.31
1505 1520 4.586421 CAGATCCTCCAACACTGAGCTATA 59.414 45.833 0.00 0.00 0.00 1.31
1506 1521 3.387374 CAGATCCTCCAACACTGAGCTAT 59.613 47.826 0.00 0.00 0.00 2.97
1507 1522 2.762887 CAGATCCTCCAACACTGAGCTA 59.237 50.000 0.00 0.00 0.00 3.32
1508 1523 1.554160 CAGATCCTCCAACACTGAGCT 59.446 52.381 0.00 0.00 0.00 4.09
1509 1524 1.277557 ACAGATCCTCCAACACTGAGC 59.722 52.381 0.00 0.00 33.53 4.26
1510 1525 2.416566 CGACAGATCCTCCAACACTGAG 60.417 54.545 0.00 0.00 33.53 3.35
1511 1526 1.546029 CGACAGATCCTCCAACACTGA 59.454 52.381 0.00 0.00 33.53 3.41
1512 1527 1.273606 ACGACAGATCCTCCAACACTG 59.726 52.381 0.00 0.00 35.14 3.66
1513 1528 1.633774 ACGACAGATCCTCCAACACT 58.366 50.000 0.00 0.00 0.00 3.55
1514 1529 2.069273 CAACGACAGATCCTCCAACAC 58.931 52.381 0.00 0.00 0.00 3.32
1515 1530 1.691976 ACAACGACAGATCCTCCAACA 59.308 47.619 0.00 0.00 0.00 3.33
1516 1531 2.457366 ACAACGACAGATCCTCCAAC 57.543 50.000 0.00 0.00 0.00 3.77
1517 1532 3.071023 AGAAACAACGACAGATCCTCCAA 59.929 43.478 0.00 0.00 0.00 3.53
1563 1578 0.407139 AAAAGGATGTGCAGGCCTCT 59.593 50.000 0.00 0.00 0.00 3.69
1853 1869 4.437390 CCGCATCTAGGCTTACAAACAAAG 60.437 45.833 0.00 0.00 0.00 2.77
2003 2023 9.605275 TGATTTGGTATTCTAGATGTTGAGAAG 57.395 33.333 0.00 0.00 35.24 2.85
2183 2206 6.207691 CAGGTTTTCTGTTTCTTCTGGAAA 57.792 37.500 0.00 0.00 38.64 3.13
2209 2232 1.398958 GGGGTGAAACAGGCAAAGCA 61.399 55.000 0.00 0.00 39.98 3.91
2588 3521 3.058363 GCCAAGAGAAAGACAGAAAGCAG 60.058 47.826 0.00 0.00 0.00 4.24
2594 3527 5.645067 CACAATATGCCAAGAGAAAGACAGA 59.355 40.000 0.00 0.00 0.00 3.41
2816 3752 2.621668 GCAAAGTTAAGGAGGCCCTGAT 60.622 50.000 0.00 0.00 43.48 2.90
2906 4129 2.636647 TTCTGCACAAGGATGTCACA 57.363 45.000 0.00 0.00 37.82 3.58
2959 4182 5.518848 TTCACACACAGAAATTGATTGCT 57.481 34.783 0.00 0.00 0.00 3.91
3060 4284 9.463443 CTTTTAAAAACCTCTACTTCCAACATG 57.537 33.333 1.66 0.00 0.00 3.21
3230 4458 7.330946 CCATGAAATCGTCTAGTTGAAGTACAA 59.669 37.037 0.00 0.00 36.02 2.41
3231 4459 6.811665 CCATGAAATCGTCTAGTTGAAGTACA 59.188 38.462 0.00 0.00 0.00 2.90
3235 4463 4.034510 GCCCATGAAATCGTCTAGTTGAAG 59.965 45.833 0.00 0.00 0.00 3.02
3248 4476 4.757019 TTACATGCATTGCCCATGAAAT 57.243 36.364 14.02 0.00 41.97 2.17
3252 4480 4.859304 ACTATTACATGCATTGCCCATG 57.141 40.909 6.12 6.79 44.28 3.66
3253 4481 6.016024 CAGTTACTATTACATGCATTGCCCAT 60.016 38.462 6.12 0.00 0.00 4.00
3254 4482 5.299028 CAGTTACTATTACATGCATTGCCCA 59.701 40.000 6.12 0.00 0.00 5.36
3255 4483 5.530915 TCAGTTACTATTACATGCATTGCCC 59.469 40.000 6.12 0.00 0.00 5.36
3256 4484 6.618287 TCAGTTACTATTACATGCATTGCC 57.382 37.500 6.12 0.00 0.00 4.52
3257 4485 8.961092 CAATTCAGTTACTATTACATGCATTGC 58.039 33.333 0.00 0.46 0.00 3.56
3274 4502 9.574516 ACTTACTCCTATCAAAACAATTCAGTT 57.425 29.630 0.00 0.00 0.00 3.16
3275 4503 9.220767 GACTTACTCCTATCAAAACAATTCAGT 57.779 33.333 0.00 0.00 0.00 3.41
3276 4504 9.442047 AGACTTACTCCTATCAAAACAATTCAG 57.558 33.333 0.00 0.00 0.00 3.02
3277 4505 9.436957 GAGACTTACTCCTATCAAAACAATTCA 57.563 33.333 0.00 0.00 39.53 2.57
3278 4506 9.436957 TGAGACTTACTCCTATCAAAACAATTC 57.563 33.333 0.00 0.00 44.34 2.17
3279 4507 9.965902 ATGAGACTTACTCCTATCAAAACAATT 57.034 29.630 0.00 0.00 44.34 2.32
3282 4510 9.256228 ACTATGAGACTTACTCCTATCAAAACA 57.744 33.333 0.00 0.00 44.34 2.83
3287 4515 9.727859 GTGATACTATGAGACTTACTCCTATCA 57.272 37.037 0.00 0.00 44.34 2.15
3288 4516 9.169592 GGTGATACTATGAGACTTACTCCTATC 57.830 40.741 0.00 0.00 44.34 2.08
3289 4517 8.670490 TGGTGATACTATGAGACTTACTCCTAT 58.330 37.037 0.00 0.00 44.34 2.57
3290 4518 8.042286 TGGTGATACTATGAGACTTACTCCTA 57.958 38.462 0.00 0.00 44.34 2.94
3291 4519 6.912426 TGGTGATACTATGAGACTTACTCCT 58.088 40.000 0.00 0.00 44.34 3.69
3292 4520 7.448777 TCATGGTGATACTATGAGACTTACTCC 59.551 40.741 4.20 0.00 40.47 3.85
3293 4521 8.397575 TCATGGTGATACTATGAGACTTACTC 57.602 38.462 4.20 0.00 40.47 2.59
3294 4522 8.768501 TTCATGGTGATACTATGAGACTTACT 57.231 34.615 7.81 0.00 44.88 2.24
3295 4523 8.851145 TCTTCATGGTGATACTATGAGACTTAC 58.149 37.037 7.81 0.00 44.88 2.34
3296 4524 8.996651 TCTTCATGGTGATACTATGAGACTTA 57.003 34.615 7.81 0.00 44.88 2.24
3297 4525 7.904558 TCTTCATGGTGATACTATGAGACTT 57.095 36.000 7.81 0.00 44.88 3.01
3298 4526 7.094420 CGATCTTCATGGTGATACTATGAGACT 60.094 40.741 7.81 0.00 44.88 3.24
3299 4527 7.026562 CGATCTTCATGGTGATACTATGAGAC 58.973 42.308 7.81 2.49 44.88 3.36
3300 4528 6.349694 GCGATCTTCATGGTGATACTATGAGA 60.350 42.308 7.81 8.26 44.88 3.27
3301 4529 5.804473 GCGATCTTCATGGTGATACTATGAG 59.196 44.000 7.81 4.23 44.88 2.90
3302 4530 5.619981 CGCGATCTTCATGGTGATACTATGA 60.620 44.000 0.00 4.20 43.04 2.15
3303 4531 4.560427 CGCGATCTTCATGGTGATACTATG 59.440 45.833 0.00 0.00 38.28 2.23
3304 4532 4.459337 TCGCGATCTTCATGGTGATACTAT 59.541 41.667 3.71 0.00 0.00 2.12
3305 4533 3.818773 TCGCGATCTTCATGGTGATACTA 59.181 43.478 3.71 0.00 0.00 1.82
3306 4534 2.623416 TCGCGATCTTCATGGTGATACT 59.377 45.455 3.71 0.00 0.00 2.12
3307 4535 3.013276 TCGCGATCTTCATGGTGATAC 57.987 47.619 3.71 0.00 0.00 2.24
3308 4536 3.726291 TTCGCGATCTTCATGGTGATA 57.274 42.857 10.88 0.00 28.54 2.15
3309 4537 2.602257 TTCGCGATCTTCATGGTGAT 57.398 45.000 10.88 0.00 28.54 3.06
3310 4538 2.378445 TTTCGCGATCTTCATGGTGA 57.622 45.000 10.88 0.00 0.00 4.02
3311 4539 3.469899 TTTTTCGCGATCTTCATGGTG 57.530 42.857 10.88 0.00 0.00 4.17
3341 4569 6.817765 TCTCCAACAACAAATCAAGGATAC 57.182 37.500 0.00 0.00 0.00 2.24
3342 4570 7.505585 AGTTTCTCCAACAACAAATCAAGGATA 59.494 33.333 0.00 0.00 37.93 2.59
3343 4571 6.324770 AGTTTCTCCAACAACAAATCAAGGAT 59.675 34.615 0.00 0.00 37.93 3.24
3344 4572 5.656416 AGTTTCTCCAACAACAAATCAAGGA 59.344 36.000 0.00 0.00 37.93 3.36
3345 4573 5.750067 CAGTTTCTCCAACAACAAATCAAGG 59.250 40.000 0.00 0.00 37.93 3.61
3346 4574 6.332630 ACAGTTTCTCCAACAACAAATCAAG 58.667 36.000 0.00 0.00 37.93 3.02
3347 4575 6.279513 ACAGTTTCTCCAACAACAAATCAA 57.720 33.333 0.00 0.00 37.93 2.57
3348 4576 5.913137 ACAGTTTCTCCAACAACAAATCA 57.087 34.783 0.00 0.00 37.93 2.57
3349 4577 8.871686 AATTACAGTTTCTCCAACAACAAATC 57.128 30.769 0.00 0.00 37.93 2.17
3350 4578 9.665719 AAAATTACAGTTTCTCCAACAACAAAT 57.334 25.926 0.00 0.00 37.93 2.32
3351 4579 9.145865 GAAAATTACAGTTTCTCCAACAACAAA 57.854 29.630 0.00 0.00 37.93 2.83
3352 4580 7.762159 GGAAAATTACAGTTTCTCCAACAACAA 59.238 33.333 0.00 0.00 37.93 2.83
3353 4581 7.123547 AGGAAAATTACAGTTTCTCCAACAACA 59.876 33.333 0.00 0.00 37.93 3.33
3354 4582 7.489160 AGGAAAATTACAGTTTCTCCAACAAC 58.511 34.615 0.00 0.00 37.93 3.32
3355 4583 7.340743 TGAGGAAAATTACAGTTTCTCCAACAA 59.659 33.333 0.00 0.00 37.93 2.83
3356 4584 6.831353 TGAGGAAAATTACAGTTTCTCCAACA 59.169 34.615 0.00 0.00 37.93 3.33
3357 4585 7.228706 TCTGAGGAAAATTACAGTTTCTCCAAC 59.771 37.037 0.00 0.00 35.68 3.77
3358 4586 7.287061 TCTGAGGAAAATTACAGTTTCTCCAA 58.713 34.615 0.00 0.00 35.68 3.53
3359 4587 6.837312 TCTGAGGAAAATTACAGTTTCTCCA 58.163 36.000 0.00 0.00 35.68 3.86
3360 4588 7.745620 TTCTGAGGAAAATTACAGTTTCTCC 57.254 36.000 0.00 0.00 35.68 3.71
3361 4589 9.057089 TCTTTCTGAGGAAAATTACAGTTTCTC 57.943 33.333 0.00 0.00 40.41 2.87
3362 4590 8.980481 TCTTTCTGAGGAAAATTACAGTTTCT 57.020 30.769 0.00 0.00 40.41 2.52
3363 4591 9.452065 GTTCTTTCTGAGGAAAATTACAGTTTC 57.548 33.333 0.00 0.00 40.41 2.78
3364 4592 8.966868 TGTTCTTTCTGAGGAAAATTACAGTTT 58.033 29.630 0.00 0.00 40.41 2.66
3365 4593 8.519799 TGTTCTTTCTGAGGAAAATTACAGTT 57.480 30.769 0.00 0.00 40.41 3.16
3366 4594 8.697507 ATGTTCTTTCTGAGGAAAATTACAGT 57.302 30.769 0.00 0.00 40.41 3.55
3368 4596 9.793259 AGTATGTTCTTTCTGAGGAAAATTACA 57.207 29.630 4.33 0.00 40.41 2.41
3374 4602 9.529823 TCTAGTAGTATGTTCTTTCTGAGGAAA 57.470 33.333 0.00 0.00 38.90 3.13
3375 4603 8.958506 GTCTAGTAGTATGTTCTTTCTGAGGAA 58.041 37.037 0.00 0.00 0.00 3.36
3376 4604 8.330247 AGTCTAGTAGTATGTTCTTTCTGAGGA 58.670 37.037 0.00 0.00 0.00 3.71
3377 4605 8.514330 AGTCTAGTAGTATGTTCTTTCTGAGG 57.486 38.462 0.00 0.00 0.00 3.86
3378 4606 9.391006 AGAGTCTAGTAGTATGTTCTTTCTGAG 57.609 37.037 0.00 0.00 0.00 3.35
3379 4607 9.386010 GAGAGTCTAGTAGTATGTTCTTTCTGA 57.614 37.037 0.00 0.00 0.00 3.27
3380 4608 9.168451 TGAGAGTCTAGTAGTATGTTCTTTCTG 57.832 37.037 0.00 0.00 0.00 3.02
3381 4609 9.391006 CTGAGAGTCTAGTAGTATGTTCTTTCT 57.609 37.037 0.00 0.00 0.00 2.52
3382 4610 9.169592 ACTGAGAGTCTAGTAGTATGTTCTTTC 57.830 37.037 0.00 0.00 0.00 2.62
3383 4611 9.169592 GACTGAGAGTCTAGTAGTATGTTCTTT 57.830 37.037 0.00 0.00 41.88 2.52
3384 4612 7.771826 GGACTGAGAGTCTAGTAGTATGTTCTT 59.228 40.741 0.00 0.00 44.46 2.52
3385 4613 7.126726 AGGACTGAGAGTCTAGTAGTATGTTCT 59.873 40.741 0.00 0.00 44.46 3.01
3386 4614 7.277396 AGGACTGAGAGTCTAGTAGTATGTTC 58.723 42.308 0.00 0.00 44.46 3.18
3387 4615 7.092802 TGAGGACTGAGAGTCTAGTAGTATGTT 60.093 40.741 0.00 0.00 44.46 2.71
3388 4616 6.384595 TGAGGACTGAGAGTCTAGTAGTATGT 59.615 42.308 0.00 0.00 44.46 2.29
3389 4617 6.822442 TGAGGACTGAGAGTCTAGTAGTATG 58.178 44.000 0.00 0.00 44.46 2.39
3390 4618 6.042781 CCTGAGGACTGAGAGTCTAGTAGTAT 59.957 46.154 0.00 0.00 44.46 2.12
3391 4619 5.364446 CCTGAGGACTGAGAGTCTAGTAGTA 59.636 48.000 0.00 0.00 44.46 1.82
3392 4620 4.163458 CCTGAGGACTGAGAGTCTAGTAGT 59.837 50.000 0.00 0.00 44.46 2.73
3393 4621 4.163458 ACCTGAGGACTGAGAGTCTAGTAG 59.837 50.000 4.99 0.00 44.46 2.57
3394 4622 4.080807 CACCTGAGGACTGAGAGTCTAGTA 60.081 50.000 4.99 0.00 44.46 1.82
3395 4623 2.916934 ACCTGAGGACTGAGAGTCTAGT 59.083 50.000 4.99 0.00 44.46 2.57
3396 4624 3.278574 CACCTGAGGACTGAGAGTCTAG 58.721 54.545 4.99 0.00 44.46 2.43
3397 4625 2.619332 GCACCTGAGGACTGAGAGTCTA 60.619 54.545 4.99 0.00 44.46 2.59
3398 4626 1.890573 GCACCTGAGGACTGAGAGTCT 60.891 57.143 4.99 0.00 44.46 3.24
3399 4627 0.530288 GCACCTGAGGACTGAGAGTC 59.470 60.000 4.99 0.00 44.32 3.36
3400 4628 0.178950 TGCACCTGAGGACTGAGAGT 60.179 55.000 4.99 0.00 0.00 3.24
3401 4629 0.531657 CTGCACCTGAGGACTGAGAG 59.468 60.000 4.99 0.00 0.00 3.20
3402 4630 1.539560 GCTGCACCTGAGGACTGAGA 61.540 60.000 4.99 0.00 0.00 3.27
3403 4631 1.079266 GCTGCACCTGAGGACTGAG 60.079 63.158 4.99 0.00 0.00 3.35
3404 4632 2.587247 GGCTGCACCTGAGGACTGA 61.587 63.158 4.99 0.00 34.51 3.41
3405 4633 2.046507 GGCTGCACCTGAGGACTG 60.047 66.667 4.99 2.00 34.51 3.51
3406 4634 2.527624 TGGCTGCACCTGAGGACT 60.528 61.111 4.99 0.00 40.22 3.85
3407 4635 2.046507 CTGGCTGCACCTGAGGAC 60.047 66.667 4.99 0.00 39.72 3.85
3408 4636 3.324930 CCTGGCTGCACCTGAGGA 61.325 66.667 4.99 0.00 39.72 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.