Multiple sequence alignment - TraesCS5D01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G169100 chr5D 100.000 5781 0 0 1 5781 265540056 265545836 0.000000e+00 10676.0
1 TraesCS5D01G169100 chr5D 86.538 208 26 2 2927 3133 557210906 557211112 1.620000e-55 228.0
2 TraesCS5D01G169100 chr5D 100.000 35 0 0 5124 5158 265545145 265545179 1.340000e-06 65.8
3 TraesCS5D01G169100 chr5D 100.000 35 0 0 5090 5124 265545179 265545213 1.340000e-06 65.8
4 TraesCS5D01G169100 chr5D 100.000 30 0 0 4668 4697 113382122 113382093 8.090000e-04 56.5
5 TraesCS5D01G169100 chr5B 93.287 2741 83 27 1 2703 298677950 298680627 0.000000e+00 3949.0
6 TraesCS5D01G169100 chr5B 97.503 1722 34 6 3407 5124 298681043 298682759 0.000000e+00 2933.0
7 TraesCS5D01G169100 chr5B 95.289 658 29 1 5124 5781 298682725 298683380 0.000000e+00 1042.0
8 TraesCS5D01G169100 chr5B 88.506 87 10 0 3046 3132 253207088 253207002 7.920000e-19 106.0
9 TraesCS5D01G169100 chr5B 100.000 29 0 0 2844 2872 398838706 398838678 3.000000e-03 54.7
10 TraesCS5D01G169100 chr5B 100.000 28 0 0 4675 4702 539437985 539438012 1.000000e-02 52.8
11 TraesCS5D01G169100 chr5A 90.643 2116 79 36 597 2661 353053909 353055956 0.000000e+00 2700.0
12 TraesCS5D01G169100 chr5A 93.836 730 35 7 4403 5124 353058910 353059637 0.000000e+00 1090.0
13 TraesCS5D01G169100 chr5A 94.529 658 26 6 5124 5781 353059603 353060250 0.000000e+00 1007.0
14 TraesCS5D01G169100 chr5A 93.302 642 25 7 3743 4381 353057359 353057985 0.000000e+00 931.0
15 TraesCS5D01G169100 chr5A 92.506 387 17 7 3366 3746 353056695 353057075 1.420000e-150 544.0
16 TraesCS5D01G169100 chr5A 93.447 351 17 4 1 349 353052567 353052913 3.090000e-142 516.0
17 TraesCS5D01G169100 chr5A 88.500 200 8 7 406 605 353052904 353053088 1.620000e-55 228.0
18 TraesCS5D01G169100 chr5A 90.196 51 2 2 2653 2703 353056142 353056189 4.840000e-06 63.9
19 TraesCS5D01G169100 chr7D 95.000 100 5 0 2959 3058 72938118 72938019 2.160000e-34 158.0
20 TraesCS5D01G169100 chr7D 88.983 118 10 3 2958 3074 246838378 246838493 6.040000e-30 143.0
21 TraesCS5D01G169100 chr7D 88.596 114 12 1 2960 3072 93952113 93952000 2.810000e-28 137.0
22 TraesCS5D01G169100 chr7D 93.590 78 5 0 3056 3133 526525221 526525298 3.660000e-22 117.0
23 TraesCS5D01G169100 chr6D 95.876 97 4 0 2961 3057 428262041 428262137 2.160000e-34 158.0
24 TraesCS5D01G169100 chr4A 93.396 106 7 0 2953 3058 650040874 650040979 2.160000e-34 158.0
25 TraesCS5D01G169100 chr4A 96.970 33 0 1 4670 4702 238389314 238389345 3.000000e-03 54.7
26 TraesCS5D01G169100 chr4A 94.444 36 0 2 4671 4705 736113392 736113358 3.000000e-03 54.7
27 TraesCS5D01G169100 chrUn 90.678 118 9 2 3017 3133 262809141 262809257 7.760000e-34 156.0
28 TraesCS5D01G169100 chrUn 100.000 34 0 0 1508 1541 281635398 281635365 4.840000e-06 63.9
29 TraesCS5D01G169100 chrUn 100.000 34 0 0 1508 1541 281642272 281642239 4.840000e-06 63.9
30 TraesCS5D01G169100 chrUn 100.000 34 0 0 1508 1541 312315256 312315223 4.840000e-06 63.9
31 TraesCS5D01G169100 chrUn 100.000 28 0 0 2844 2871 67351005 67351032 1.000000e-02 52.8
32 TraesCS5D01G169100 chrUn 100.000 28 0 0 2844 2871 271436779 271436752 1.000000e-02 52.8
33 TraesCS5D01G169100 chr2B 94.118 102 6 0 2957 3058 73800315 73800214 7.760000e-34 156.0
34 TraesCS5D01G169100 chr2B 89.655 116 12 0 2942 3057 575876507 575876622 1.300000e-31 148.0
35 TraesCS5D01G169100 chr2B 96.970 33 1 0 2848 2880 431171378 431171410 8.090000e-04 56.5
36 TraesCS5D01G169100 chr2B 100.000 30 0 0 2843 2872 683308702 683308673 8.090000e-04 56.5
37 TraesCS5D01G169100 chr2B 100.000 29 0 0 2852 2880 126641144 126641172 3.000000e-03 54.7
38 TraesCS5D01G169100 chr1D 93.269 104 7 0 2954 3057 466481220 466481117 2.790000e-33 154.0
39 TraesCS5D01G169100 chr3B 83.146 178 17 6 2956 3133 497700867 497700703 3.610000e-32 150.0
40 TraesCS5D01G169100 chr3B 87.302 126 13 2 2961 3085 637538442 637538319 2.170000e-29 141.0
41 TraesCS5D01G169100 chr3B 91.549 71 3 1 423 493 253503367 253503434 1.710000e-15 95.3
42 TraesCS5D01G169100 chr3B 96.970 33 0 1 4670 4702 171174221 171174190 3.000000e-03 54.7
43 TraesCS5D01G169100 chr3B 100.000 28 0 0 4673 4700 786782777 786782750 1.000000e-02 52.8
44 TraesCS5D01G169100 chr2D 91.509 106 7 2 2948 3052 360308220 360308324 1.680000e-30 145.0
45 TraesCS5D01G169100 chr2D 100.000 29 0 0 2844 2872 622713841 622713813 3.000000e-03 54.7
46 TraesCS5D01G169100 chr3D 89.474 114 10 2 2961 3072 438431028 438430915 6.040000e-30 143.0
47 TraesCS5D01G169100 chr3D 89.474 114 10 2 2961 3072 462197510 462197397 6.040000e-30 143.0
48 TraesCS5D01G169100 chr3D 100.000 29 0 0 2844 2872 400790186 400790214 3.000000e-03 54.7
49 TraesCS5D01G169100 chr3D 100.000 29 0 0 2844 2872 458637777 458637749 3.000000e-03 54.7
50 TraesCS5D01G169100 chr7A 87.200 125 11 5 2958 3078 68887675 68887552 2.810000e-28 137.0
51 TraesCS5D01G169100 chr4B 88.506 87 10 0 3046 3132 252295156 252295070 7.920000e-19 106.0
52 TraesCS5D01G169100 chr4B 88.506 87 10 0 3046 3132 256256473 256256387 7.920000e-19 106.0
53 TraesCS5D01G169100 chr4B 88.506 87 10 0 3046 3132 282239801 282239715 7.920000e-19 106.0
54 TraesCS5D01G169100 chr4B 100.000 28 0 0 2847 2874 631607445 631607472 1.000000e-02 52.8
55 TraesCS5D01G169100 chr3A 72.263 274 54 17 1508 1773 7790203 7789944 1.340000e-06 65.8
56 TraesCS5D01G169100 chr6B 97.059 34 1 0 2852 2885 522928804 522928837 2.250000e-04 58.4
57 TraesCS5D01G169100 chr4D 100.000 31 0 0 2844 2874 271730510 271730540 2.250000e-04 58.4
58 TraesCS5D01G169100 chr4D 100.000 31 0 0 2844 2874 299811249 299811279 2.250000e-04 58.4
59 TraesCS5D01G169100 chr4D 100.000 30 0 0 2845 2874 482161045 482161016 8.090000e-04 56.5
60 TraesCS5D01G169100 chr6A 100.000 29 0 0 2844 2872 369493655 369493627 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G169100 chr5D 265540056 265545836 5780 False 3602.533333 10676 100.000000 1 5781 3 chr5D.!!$F2 5780
1 TraesCS5D01G169100 chr5B 298677950 298683380 5430 False 2641.333333 3949 95.359667 1 5781 3 chr5B.!!$F2 5780
2 TraesCS5D01G169100 chr5A 353052567 353060250 7683 False 884.987500 2700 92.119875 1 5781 8 chr5A.!!$F1 5780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 1442 1.403249 CGCTTTTCCATGAAGGCAAGG 60.403 52.381 0.0 0.0 37.29 3.61 F
1050 1897 0.979709 TGATCCTCCTCCTGGTGCTG 60.980 60.000 0.0 0.0 34.23 4.41 F
2304 3213 1.537202 GCAGGTTTTGAGAACGCAGAT 59.463 47.619 0.0 0.0 0.00 2.90 F
2896 4307 0.395312 TCCCTCCGTTCGAAAAAGCT 59.605 50.000 0.0 0.0 0.00 3.74 F
3194 4620 0.171455 GATATAGGAGCGTCGGCCTG 59.829 60.000 0.0 0.0 41.24 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2834 0.602106 CTCACTCCTGTGCACCTGTG 60.602 60.000 15.69 16.49 43.49 3.66 R
2876 4287 0.796927 GCTTTTTCGAACGGAGGGAG 59.203 55.000 0.00 0.00 0.00 4.30 R
3175 4601 0.171455 CAGGCCGACGCTCCTATATC 59.829 60.000 0.00 0.00 34.44 1.63 R
4022 5744 4.819105 TGTAGTACCACATAGCTGCTTT 57.181 40.909 7.79 0.00 0.00 3.51 R
5178 7818 1.599542 CTAATGGCTGCGGCTTAGTTC 59.400 52.381 18.85 0.00 38.73 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 112 1.749634 ACCAACCTCGTCTCCGAATAG 59.250 52.381 0.00 0.00 43.69 1.73
143 145 2.498941 CCGCCTCGGCCTAGATCAA 61.499 63.158 5.70 0.00 41.17 2.57
207 210 2.203294 AAGGCACCGTGGGTTGAC 60.203 61.111 0.00 0.00 31.02 3.18
354 357 6.072064 GGAATACTACTACGGATGTACAGCAT 60.072 42.308 13.97 2.81 41.24 3.79
355 358 7.120285 GGAATACTACTACGGATGTACAGCATA 59.880 40.741 13.97 3.91 38.06 3.14
356 359 5.686159 ACTACTACGGATGTACAGCATAC 57.314 43.478 13.97 0.00 38.06 2.39
357 360 5.374921 ACTACTACGGATGTACAGCATACT 58.625 41.667 13.97 0.00 38.06 2.12
390 393 7.704578 TTTGTACAGCATACTACTCTCTCTT 57.295 36.000 0.00 0.00 0.00 2.85
398 401 5.178067 GCATACTACTCTCTCTTCCGAGTAC 59.822 48.000 0.00 0.00 40.67 2.73
518 524 5.865977 TGAGAATGGGAGGCCATAAATAT 57.134 39.130 5.01 0.00 0.00 1.28
520 526 6.012113 TGAGAATGGGAGGCCATAAATATTG 58.988 40.000 5.01 0.00 0.00 1.90
521 527 5.969086 AGAATGGGAGGCCATAAATATTGT 58.031 37.500 5.01 0.00 0.00 2.71
522 528 7.102518 AGAATGGGAGGCCATAAATATTGTA 57.897 36.000 5.01 0.00 0.00 2.41
525 531 5.630121 TGGGAGGCCATAAATATTGTAGTG 58.370 41.667 5.01 0.00 0.00 2.74
526 532 5.010282 GGGAGGCCATAAATATTGTAGTGG 58.990 45.833 5.01 0.00 0.00 4.00
527 533 5.457633 GGGAGGCCATAAATATTGTAGTGGT 60.458 44.000 5.01 0.00 0.00 4.16
564 570 1.868498 GCGGCGCCATTTTACTACATA 59.132 47.619 28.98 0.00 0.00 2.29
565 571 2.349155 GCGGCGCCATTTTACTACATAC 60.349 50.000 28.98 0.00 0.00 2.39
566 572 2.867368 CGGCGCCATTTTACTACATACA 59.133 45.455 28.98 0.00 0.00 2.29
567 573 3.496884 CGGCGCCATTTTACTACATACAT 59.503 43.478 28.98 0.00 0.00 2.29
576 582 7.012704 CCATTTTACTACATACATCAGCTGCTT 59.987 37.037 9.47 0.00 0.00 3.91
608 1442 1.403249 CGCTTTTCCATGAAGGCAAGG 60.403 52.381 0.00 0.00 37.29 3.61
629 1463 2.372690 CGCACAGAGGAACGAACGG 61.373 63.158 0.00 0.00 0.00 4.44
857 1697 4.081642 TCAGGCTTAGGCGTCCATATATTC 60.082 45.833 0.00 0.00 39.81 1.75
861 1701 4.142315 GCTTAGGCGTCCATATATTCGGTA 60.142 45.833 0.00 0.00 0.00 4.02
867 1707 5.330295 GCGTCCATATATTCGGTACAGTAG 58.670 45.833 0.00 0.00 0.00 2.57
869 1709 5.163683 CGTCCATATATTCGGTACAGTAGGG 60.164 48.000 0.00 0.00 0.00 3.53
870 1710 5.713861 GTCCATATATTCGGTACAGTAGGGT 59.286 44.000 0.00 0.00 0.00 4.34
948 1795 2.904932 CGCAACAAGAAAGAAAGATCGC 59.095 45.455 0.00 0.00 0.00 4.58
1050 1897 0.979709 TGATCCTCCTCCTGGTGCTG 60.980 60.000 0.00 0.00 34.23 4.41
2069 2941 4.318021 GCACAGCACTGCACCACG 62.318 66.667 3.30 0.00 37.11 4.94
2204 3095 7.486551 CACTGTACACATTCTTAGACTCTTAGC 59.513 40.741 0.00 0.00 0.00 3.09
2207 3101 5.415221 ACACATTCTTAGACTCTTAGCAGC 58.585 41.667 0.00 0.00 0.00 5.25
2227 3121 2.229784 GCCCCTTTCACATTTCTGAGTG 59.770 50.000 0.00 0.00 37.10 3.51
2230 3124 3.503748 CCCTTTCACATTTCTGAGTGGTC 59.496 47.826 0.00 0.00 36.43 4.02
2238 3132 6.210584 TCACATTTCTGAGTGGTCATGTAGTA 59.789 38.462 0.00 0.00 36.43 1.82
2239 3133 6.533012 CACATTTCTGAGTGGTCATGTAGTAG 59.467 42.308 0.00 0.00 32.24 2.57
2240 3134 6.211584 ACATTTCTGAGTGGTCATGTAGTAGT 59.788 38.462 0.00 0.00 30.18 2.73
2248 3142 7.396339 TGAGTGGTCATGTAGTAGTGACTTTAT 59.604 37.037 12.78 1.66 43.23 1.40
2304 3213 1.537202 GCAGGTTTTGAGAACGCAGAT 59.463 47.619 0.00 0.00 0.00 2.90
2508 3417 3.871594 CAGTTCAGTTTTCTCGGTTGAGT 59.128 43.478 0.00 0.00 43.09 3.41
2643 3552 4.794169 ACGCAATGGACTGTAAATGAAAC 58.206 39.130 0.00 0.00 0.00 2.78
2651 3560 4.988540 GGACTGTAAATGAAACCTTTTGCC 59.011 41.667 0.00 0.00 0.00 4.52
2669 3578 9.482627 CCTTTTGCCAGTTTTGTAATGTTATTA 57.517 29.630 0.00 0.00 0.00 0.98
2861 4272 3.557264 GGCTTTGGAATATACTCCCTCCG 60.557 52.174 0.00 0.00 34.22 4.63
2873 4284 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2876 4287 2.545322 CCCTCCGTTCCTAAATACTCGC 60.545 54.545 0.00 0.00 0.00 5.03
2878 4289 3.550436 CCTCCGTTCCTAAATACTCGCTC 60.550 52.174 0.00 0.00 0.00 5.03
2879 4290 2.360165 TCCGTTCCTAAATACTCGCTCC 59.640 50.000 0.00 0.00 0.00 4.70
2880 4291 2.545322 CCGTTCCTAAATACTCGCTCCC 60.545 54.545 0.00 0.00 0.00 4.30
2881 4292 2.361438 CGTTCCTAAATACTCGCTCCCT 59.639 50.000 0.00 0.00 0.00 4.20
2882 4293 3.550436 CGTTCCTAAATACTCGCTCCCTC 60.550 52.174 0.00 0.00 0.00 4.30
2883 4294 2.595238 TCCTAAATACTCGCTCCCTCC 58.405 52.381 0.00 0.00 0.00 4.30
2884 4295 1.269998 CCTAAATACTCGCTCCCTCCG 59.730 57.143 0.00 0.00 0.00 4.63
2885 4296 1.955080 CTAAATACTCGCTCCCTCCGT 59.045 52.381 0.00 0.00 0.00 4.69
2886 4297 1.192428 AAATACTCGCTCCCTCCGTT 58.808 50.000 0.00 0.00 0.00 4.44
2887 4298 0.745468 AATACTCGCTCCCTCCGTTC 59.255 55.000 0.00 0.00 0.00 3.95
2888 4299 1.445716 ATACTCGCTCCCTCCGTTCG 61.446 60.000 0.00 0.00 0.00 3.95
2889 4300 2.526450 TACTCGCTCCCTCCGTTCGA 62.526 60.000 0.00 0.00 0.00 3.71
2890 4301 2.674033 TCGCTCCCTCCGTTCGAA 60.674 61.111 0.00 0.00 0.00 3.71
2891 4302 2.209064 CTCGCTCCCTCCGTTCGAAA 62.209 60.000 0.00 0.00 0.00 3.46
2892 4303 1.373748 CGCTCCCTCCGTTCGAAAA 60.374 57.895 0.00 0.00 0.00 2.29
2893 4304 0.947180 CGCTCCCTCCGTTCGAAAAA 60.947 55.000 0.00 0.00 0.00 1.94
2894 4305 0.796927 GCTCCCTCCGTTCGAAAAAG 59.203 55.000 0.00 0.00 0.00 2.27
2895 4306 0.796927 CTCCCTCCGTTCGAAAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
2896 4307 0.395312 TCCCTCCGTTCGAAAAAGCT 59.605 50.000 0.00 0.00 0.00 3.74
2897 4308 1.202722 TCCCTCCGTTCGAAAAAGCTT 60.203 47.619 0.00 0.00 0.00 3.74
2898 4309 2.037511 TCCCTCCGTTCGAAAAAGCTTA 59.962 45.455 0.00 0.00 0.00 3.09
2899 4310 2.809696 CCCTCCGTTCGAAAAAGCTTAA 59.190 45.455 0.00 0.00 0.00 1.85
2900 4311 3.439129 CCCTCCGTTCGAAAAAGCTTAAT 59.561 43.478 0.00 0.00 0.00 1.40
2901 4312 4.403453 CCTCCGTTCGAAAAAGCTTAATG 58.597 43.478 0.00 0.00 0.00 1.90
2902 4313 4.403453 CTCCGTTCGAAAAAGCTTAATGG 58.597 43.478 0.00 5.05 0.00 3.16
2903 4314 4.066490 TCCGTTCGAAAAAGCTTAATGGA 58.934 39.130 13.55 13.55 33.82 3.41
2904 4315 4.515944 TCCGTTCGAAAAAGCTTAATGGAA 59.484 37.500 14.73 9.98 33.41 3.53
2905 4316 4.851558 CCGTTCGAAAAAGCTTAATGGAAG 59.148 41.667 10.48 5.52 38.30 3.46
2906 4317 5.334569 CCGTTCGAAAAAGCTTAATGGAAGA 60.335 40.000 10.48 0.00 37.33 2.87
2907 4318 5.564127 CGTTCGAAAAAGCTTAATGGAAGAC 59.436 40.000 0.00 0.00 37.33 3.01
2908 4319 6.435428 GTTCGAAAAAGCTTAATGGAAGACA 58.565 36.000 0.00 0.00 37.33 3.41
2909 4320 6.627395 TCGAAAAAGCTTAATGGAAGACAA 57.373 33.333 0.00 0.00 37.33 3.18
2910 4321 6.668323 TCGAAAAAGCTTAATGGAAGACAAG 58.332 36.000 0.00 0.00 37.33 3.16
2911 4322 5.343325 CGAAAAAGCTTAATGGAAGACAAGC 59.657 40.000 0.00 0.00 42.92 4.01
2916 4327 5.635417 GCTTAATGGAAGACAAGCTTTCT 57.365 39.130 0.00 0.46 40.16 2.52
2917 4328 5.635866 GCTTAATGGAAGACAAGCTTTCTC 58.364 41.667 0.00 0.00 40.16 2.87
2918 4329 5.672321 GCTTAATGGAAGACAAGCTTTCTCG 60.672 44.000 0.00 0.00 40.16 4.04
2919 4330 2.169832 TGGAAGACAAGCTTTCTCGG 57.830 50.000 0.00 0.00 36.83 4.63
2920 4331 1.691976 TGGAAGACAAGCTTTCTCGGA 59.308 47.619 0.00 0.00 36.83 4.55
2921 4332 2.070028 GGAAGACAAGCTTTCTCGGAC 58.930 52.381 0.00 0.00 36.83 4.79
2922 4333 2.548067 GGAAGACAAGCTTTCTCGGACA 60.548 50.000 0.00 0.00 36.83 4.02
2923 4334 2.447244 AGACAAGCTTTCTCGGACAG 57.553 50.000 0.00 0.00 0.00 3.51
2924 4335 1.964223 AGACAAGCTTTCTCGGACAGA 59.036 47.619 0.00 0.00 0.00 3.41
2925 4336 5.378038 GAAGACAAGCTTTCTCGGACAGAG 61.378 50.000 0.00 0.00 41.84 3.35
2966 4377 5.854010 AGATTTCGCTATGAACTACTCCA 57.146 39.130 0.00 0.00 35.97 3.86
2974 4385 3.821421 ATGAACTACTCCATCCGTTCC 57.179 47.619 0.00 0.00 35.97 3.62
2975 4386 2.531771 TGAACTACTCCATCCGTTCCA 58.468 47.619 0.00 0.00 35.97 3.53
2978 4389 4.202377 TGAACTACTCCATCCGTTCCAAAA 60.202 41.667 0.00 0.00 35.97 2.44
2981 4392 5.671493 ACTACTCCATCCGTTCCAAAATAG 58.329 41.667 0.00 0.00 0.00 1.73
2982 4393 4.837093 ACTCCATCCGTTCCAAAATAGA 57.163 40.909 0.00 0.00 0.00 1.98
2985 4396 5.104527 ACTCCATCCGTTCCAAAATAGATGA 60.105 40.000 0.00 0.00 32.55 2.92
2989 4400 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2991 4402 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2992 4403 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2993 4404 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2996 4407 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2998 4409 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2999 4410 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3046 4457 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
3048 4459 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
3050 4461 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
3051 4462 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
3052 4463 6.049955 AGTCATCTATTTTGAAACGGAGGA 57.950 37.500 0.00 0.00 0.00 3.71
3062 4488 5.471556 TTGAAACGGAGGAAGTACATACA 57.528 39.130 0.00 0.00 0.00 2.29
3067 4493 3.195661 CGGAGGAAGTACATACAAAGCC 58.804 50.000 0.00 0.00 0.00 4.35
3072 4498 6.404734 GGAGGAAGTACATACAAAGCCAAATG 60.405 42.308 0.00 0.00 0.00 2.32
3083 4509 9.722056 CATACAAAGCCAAATGAGTAAATCTAC 57.278 33.333 0.00 0.00 0.00 2.59
3087 4513 7.617041 AAGCCAAATGAGTAAATCTACACTC 57.383 36.000 0.00 0.00 41.31 3.51
3091 4517 9.162764 GCCAAATGAGTAAATCTACACTCTAAA 57.837 33.333 3.65 0.00 41.46 1.85
3143 4569 9.383519 GTTCATAGTGGAATCTAAAGTCAATCA 57.616 33.333 0.00 0.00 0.00 2.57
3155 4581 9.814899 ATCTAAAGTCAATCATAGTGAGTTGAG 57.185 33.333 3.81 3.81 38.40 3.02
3156 4582 9.025041 TCTAAAGTCAATCATAGTGAGTTGAGA 57.975 33.333 7.57 7.57 41.02 3.27
3157 4583 9.814899 CTAAAGTCAATCATAGTGAGTTGAGAT 57.185 33.333 4.07 0.00 38.46 2.75
3158 4584 8.489990 AAAGTCAATCATAGTGAGTTGAGATG 57.510 34.615 0.00 0.00 38.40 2.90
3159 4585 7.415592 AGTCAATCATAGTGAGTTGAGATGA 57.584 36.000 0.00 0.00 30.48 2.92
3160 4586 8.020777 AGTCAATCATAGTGAGTTGAGATGAT 57.979 34.615 0.00 0.00 38.57 2.45
3161 4587 8.484575 AGTCAATCATAGTGAGTTGAGATGATT 58.515 33.333 3.22 3.22 44.25 2.57
3165 4591 7.838771 TCATAGTGAGTTGAGATGATTGTTG 57.161 36.000 0.00 0.00 0.00 3.33
3166 4592 6.314648 TCATAGTGAGTTGAGATGATTGTTGC 59.685 38.462 0.00 0.00 0.00 4.17
3167 4593 3.434641 AGTGAGTTGAGATGATTGTTGCG 59.565 43.478 0.00 0.00 0.00 4.85
3168 4594 3.187227 GTGAGTTGAGATGATTGTTGCGT 59.813 43.478 0.00 0.00 0.00 5.24
3169 4595 3.187022 TGAGTTGAGATGATTGTTGCGTG 59.813 43.478 0.00 0.00 0.00 5.34
3170 4596 3.141398 AGTTGAGATGATTGTTGCGTGT 58.859 40.909 0.00 0.00 0.00 4.49
3171 4597 3.058708 AGTTGAGATGATTGTTGCGTGTG 60.059 43.478 0.00 0.00 0.00 3.82
3172 4598 2.765122 TGAGATGATTGTTGCGTGTGA 58.235 42.857 0.00 0.00 0.00 3.58
3173 4599 3.337358 TGAGATGATTGTTGCGTGTGAT 58.663 40.909 0.00 0.00 0.00 3.06
3174 4600 3.125658 TGAGATGATTGTTGCGTGTGATG 59.874 43.478 0.00 0.00 0.00 3.07
3175 4601 2.421073 AGATGATTGTTGCGTGTGATGG 59.579 45.455 0.00 0.00 0.00 3.51
3176 4602 1.889545 TGATTGTTGCGTGTGATGGA 58.110 45.000 0.00 0.00 0.00 3.41
3177 4603 2.435422 TGATTGTTGCGTGTGATGGAT 58.565 42.857 0.00 0.00 0.00 3.41
3178 4604 3.604582 TGATTGTTGCGTGTGATGGATA 58.395 40.909 0.00 0.00 0.00 2.59
3179 4605 4.198530 TGATTGTTGCGTGTGATGGATAT 58.801 39.130 0.00 0.00 0.00 1.63
3180 4606 5.363939 TGATTGTTGCGTGTGATGGATATA 58.636 37.500 0.00 0.00 0.00 0.86
3181 4607 5.466393 TGATTGTTGCGTGTGATGGATATAG 59.534 40.000 0.00 0.00 0.00 1.31
3182 4608 3.727726 TGTTGCGTGTGATGGATATAGG 58.272 45.455 0.00 0.00 0.00 2.57
3183 4609 3.386402 TGTTGCGTGTGATGGATATAGGA 59.614 43.478 0.00 0.00 0.00 2.94
3184 4610 3.942130 TGCGTGTGATGGATATAGGAG 57.058 47.619 0.00 0.00 0.00 3.69
3185 4611 2.029020 TGCGTGTGATGGATATAGGAGC 60.029 50.000 0.00 0.00 0.00 4.70
3186 4612 2.868662 CGTGTGATGGATATAGGAGCG 58.131 52.381 0.00 0.00 0.00 5.03
3187 4613 2.229062 CGTGTGATGGATATAGGAGCGT 59.771 50.000 0.00 0.00 0.00 5.07
3188 4614 3.670895 CGTGTGATGGATATAGGAGCGTC 60.671 52.174 0.00 0.00 0.00 5.19
3189 4615 2.488153 TGTGATGGATATAGGAGCGTCG 59.512 50.000 0.00 0.00 0.00 5.12
3190 4616 2.092323 TGATGGATATAGGAGCGTCGG 58.908 52.381 0.00 0.00 0.00 4.79
3191 4617 0.818296 ATGGATATAGGAGCGTCGGC 59.182 55.000 0.00 0.00 40.37 5.54
3192 4618 1.248785 TGGATATAGGAGCGTCGGCC 61.249 60.000 0.00 0.00 41.24 6.13
3193 4619 0.966370 GGATATAGGAGCGTCGGCCT 60.966 60.000 0.00 0.00 41.24 5.19
3194 4620 0.171455 GATATAGGAGCGTCGGCCTG 59.829 60.000 0.00 0.00 41.24 4.85
3195 4621 1.251527 ATATAGGAGCGTCGGCCTGG 61.252 60.000 0.00 0.00 41.24 4.45
3208 4634 3.324930 CCTGGCTGCACCTGAGGA 61.325 66.667 4.99 0.00 39.72 3.71
3209 4635 2.046507 CTGGCTGCACCTGAGGAC 60.047 66.667 4.99 0.00 39.72 3.85
3210 4636 2.527624 TGGCTGCACCTGAGGACT 60.528 61.111 4.99 0.00 40.22 3.85
3211 4637 2.046507 GGCTGCACCTGAGGACTG 60.047 66.667 4.99 2.00 34.51 3.51
3212 4638 2.587247 GGCTGCACCTGAGGACTGA 61.587 63.158 4.99 0.00 34.51 3.41
3213 4639 1.079266 GCTGCACCTGAGGACTGAG 60.079 63.158 4.99 0.00 0.00 3.35
3214 4640 1.539560 GCTGCACCTGAGGACTGAGA 61.540 60.000 4.99 0.00 0.00 3.27
3215 4641 0.531657 CTGCACCTGAGGACTGAGAG 59.468 60.000 4.99 0.00 0.00 3.20
3216 4642 0.178950 TGCACCTGAGGACTGAGAGT 60.179 55.000 4.99 0.00 0.00 3.24
3217 4643 0.530288 GCACCTGAGGACTGAGAGTC 59.470 60.000 4.99 0.00 44.32 3.36
3218 4644 1.890573 GCACCTGAGGACTGAGAGTCT 60.891 57.143 4.99 0.00 44.46 3.24
3219 4645 2.619332 GCACCTGAGGACTGAGAGTCTA 60.619 54.545 4.99 0.00 44.46 2.59
3220 4646 3.278574 CACCTGAGGACTGAGAGTCTAG 58.721 54.545 4.99 0.00 44.46 2.43
3221 4647 2.916934 ACCTGAGGACTGAGAGTCTAGT 59.083 50.000 4.99 0.00 44.46 2.57
3222 4648 4.080807 CACCTGAGGACTGAGAGTCTAGTA 60.081 50.000 4.99 0.00 44.46 1.82
3223 4649 4.163458 ACCTGAGGACTGAGAGTCTAGTAG 59.837 50.000 4.99 0.00 44.46 2.57
3224 4650 4.163458 CCTGAGGACTGAGAGTCTAGTAGT 59.837 50.000 0.00 0.00 44.46 2.73
3225 4651 5.364446 CCTGAGGACTGAGAGTCTAGTAGTA 59.636 48.000 0.00 0.00 44.46 1.82
3226 4652 6.042781 CCTGAGGACTGAGAGTCTAGTAGTAT 59.957 46.154 0.00 0.00 44.46 2.12
3227 4653 6.822442 TGAGGACTGAGAGTCTAGTAGTATG 58.178 44.000 0.00 0.00 44.46 2.39
3228 4654 6.384595 TGAGGACTGAGAGTCTAGTAGTATGT 59.615 42.308 0.00 0.00 44.46 2.29
3229 4655 7.092802 TGAGGACTGAGAGTCTAGTAGTATGTT 60.093 40.741 0.00 0.00 44.46 2.71
3230 4656 7.277396 AGGACTGAGAGTCTAGTAGTATGTTC 58.723 42.308 0.00 0.00 44.46 3.18
3231 4657 7.126726 AGGACTGAGAGTCTAGTAGTATGTTCT 59.873 40.741 0.00 0.00 44.46 3.01
3232 4658 7.771826 GGACTGAGAGTCTAGTAGTATGTTCTT 59.228 40.741 0.00 0.00 44.46 2.52
3233 4659 9.169592 GACTGAGAGTCTAGTAGTATGTTCTTT 57.830 37.037 0.00 0.00 41.88 2.52
3234 4660 9.169592 ACTGAGAGTCTAGTAGTATGTTCTTTC 57.830 37.037 0.00 0.00 0.00 2.62
3235 4661 9.391006 CTGAGAGTCTAGTAGTATGTTCTTTCT 57.609 37.037 0.00 0.00 0.00 2.52
3236 4662 9.168451 TGAGAGTCTAGTAGTATGTTCTTTCTG 57.832 37.037 0.00 0.00 0.00 3.02
3237 4663 9.386010 GAGAGTCTAGTAGTATGTTCTTTCTGA 57.614 37.037 0.00 0.00 0.00 3.27
3238 4664 9.391006 AGAGTCTAGTAGTATGTTCTTTCTGAG 57.609 37.037 0.00 0.00 0.00 3.35
3239 4665 8.514330 AGTCTAGTAGTATGTTCTTTCTGAGG 57.486 38.462 0.00 0.00 0.00 3.86
3240 4666 8.330247 AGTCTAGTAGTATGTTCTTTCTGAGGA 58.670 37.037 0.00 0.00 0.00 3.71
3241 4667 8.958506 GTCTAGTAGTATGTTCTTTCTGAGGAA 58.041 37.037 0.00 0.00 0.00 3.36
3242 4668 9.529823 TCTAGTAGTATGTTCTTTCTGAGGAAA 57.470 33.333 0.00 0.00 38.90 3.13
3248 4674 9.793259 AGTATGTTCTTTCTGAGGAAAATTACA 57.207 29.630 4.33 0.00 40.41 2.41
3250 4676 8.697507 ATGTTCTTTCTGAGGAAAATTACAGT 57.302 30.769 0.00 0.00 40.41 3.55
3251 4677 8.519799 TGTTCTTTCTGAGGAAAATTACAGTT 57.480 30.769 0.00 0.00 40.41 3.16
3252 4678 8.966868 TGTTCTTTCTGAGGAAAATTACAGTTT 58.033 29.630 0.00 0.00 40.41 2.66
3253 4679 9.452065 GTTCTTTCTGAGGAAAATTACAGTTTC 57.548 33.333 0.00 0.00 40.41 2.78
3254 4680 8.980481 TCTTTCTGAGGAAAATTACAGTTTCT 57.020 30.769 0.00 0.00 40.41 2.52
3255 4681 9.057089 TCTTTCTGAGGAAAATTACAGTTTCTC 57.943 33.333 0.00 0.00 40.41 2.87
3256 4682 7.745620 TTCTGAGGAAAATTACAGTTTCTCC 57.254 36.000 0.00 0.00 35.68 3.71
3257 4683 6.837312 TCTGAGGAAAATTACAGTTTCTCCA 58.163 36.000 0.00 0.00 35.68 3.86
3258 4684 7.287061 TCTGAGGAAAATTACAGTTTCTCCAA 58.713 34.615 0.00 0.00 35.68 3.53
3259 4685 7.228706 TCTGAGGAAAATTACAGTTTCTCCAAC 59.771 37.037 0.00 0.00 35.68 3.77
3260 4686 6.831353 TGAGGAAAATTACAGTTTCTCCAACA 59.169 34.615 0.00 0.00 37.93 3.33
3261 4687 7.340743 TGAGGAAAATTACAGTTTCTCCAACAA 59.659 33.333 0.00 0.00 37.93 2.83
3262 4688 7.489160 AGGAAAATTACAGTTTCTCCAACAAC 58.511 34.615 0.00 0.00 37.93 3.32
3263 4689 7.123547 AGGAAAATTACAGTTTCTCCAACAACA 59.876 33.333 0.00 0.00 37.93 3.33
3264 4690 7.762159 GGAAAATTACAGTTTCTCCAACAACAA 59.238 33.333 0.00 0.00 37.93 2.83
3265 4691 9.145865 GAAAATTACAGTTTCTCCAACAACAAA 57.854 29.630 0.00 0.00 37.93 2.83
3266 4692 9.665719 AAAATTACAGTTTCTCCAACAACAAAT 57.334 25.926 0.00 0.00 37.93 2.32
3267 4693 8.871686 AATTACAGTTTCTCCAACAACAAATC 57.128 30.769 0.00 0.00 37.93 2.17
3268 4694 5.913137 ACAGTTTCTCCAACAACAAATCA 57.087 34.783 0.00 0.00 37.93 2.57
3269 4695 6.279513 ACAGTTTCTCCAACAACAAATCAA 57.720 33.333 0.00 0.00 37.93 2.57
3270 4696 6.332630 ACAGTTTCTCCAACAACAAATCAAG 58.667 36.000 0.00 0.00 37.93 3.02
3271 4697 5.750067 CAGTTTCTCCAACAACAAATCAAGG 59.250 40.000 0.00 0.00 37.93 3.61
3272 4698 5.656416 AGTTTCTCCAACAACAAATCAAGGA 59.344 36.000 0.00 0.00 37.93 3.36
3273 4699 6.324770 AGTTTCTCCAACAACAAATCAAGGAT 59.675 34.615 0.00 0.00 37.93 3.24
3274 4700 7.505585 AGTTTCTCCAACAACAAATCAAGGATA 59.494 33.333 0.00 0.00 37.93 2.59
3275 4701 6.817765 TCTCCAACAACAAATCAAGGATAC 57.182 37.500 0.00 0.00 0.00 2.24
3305 4731 3.469899 TTTTTCGCGATCTTCATGGTG 57.530 42.857 10.88 0.00 0.00 4.17
3306 4732 2.378445 TTTCGCGATCTTCATGGTGA 57.622 45.000 10.88 0.00 0.00 4.02
3307 4733 2.602257 TTCGCGATCTTCATGGTGAT 57.398 45.000 10.88 0.00 28.54 3.06
3308 4734 3.726291 TTCGCGATCTTCATGGTGATA 57.274 42.857 10.88 0.00 28.54 2.15
3309 4735 3.013276 TCGCGATCTTCATGGTGATAC 57.987 47.619 3.71 0.00 0.00 2.24
3310 4736 2.623416 TCGCGATCTTCATGGTGATACT 59.377 45.455 3.71 0.00 0.00 2.12
3311 4737 3.818773 TCGCGATCTTCATGGTGATACTA 59.181 43.478 3.71 0.00 0.00 1.82
3312 4738 4.459337 TCGCGATCTTCATGGTGATACTAT 59.541 41.667 3.71 0.00 0.00 2.12
3313 4739 4.560427 CGCGATCTTCATGGTGATACTATG 59.440 45.833 0.00 0.00 38.28 2.23
3314 4740 5.619981 CGCGATCTTCATGGTGATACTATGA 60.620 44.000 0.00 4.20 43.04 2.15
3315 4741 5.804473 GCGATCTTCATGGTGATACTATGAG 59.196 44.000 7.81 4.23 44.88 2.90
3316 4742 6.349694 GCGATCTTCATGGTGATACTATGAGA 60.350 42.308 7.81 8.26 44.88 3.27
3317 4743 7.026562 CGATCTTCATGGTGATACTATGAGAC 58.973 42.308 7.81 2.49 44.88 3.36
3318 4744 7.094420 CGATCTTCATGGTGATACTATGAGACT 60.094 40.741 7.81 0.00 44.88 3.24
3319 4745 7.904558 TCTTCATGGTGATACTATGAGACTT 57.095 36.000 7.81 0.00 44.88 3.01
3320 4746 8.996651 TCTTCATGGTGATACTATGAGACTTA 57.003 34.615 7.81 0.00 44.88 2.24
3321 4747 8.851145 TCTTCATGGTGATACTATGAGACTTAC 58.149 37.037 7.81 0.00 44.88 2.34
3322 4748 8.768501 TTCATGGTGATACTATGAGACTTACT 57.231 34.615 7.81 0.00 44.88 2.24
3323 4749 8.397575 TCATGGTGATACTATGAGACTTACTC 57.602 38.462 4.20 0.00 40.47 2.59
3324 4750 7.448777 TCATGGTGATACTATGAGACTTACTCC 59.551 40.741 4.20 0.00 40.47 3.85
3325 4751 6.912426 TGGTGATACTATGAGACTTACTCCT 58.088 40.000 0.00 0.00 44.34 3.69
3326 4752 8.042286 TGGTGATACTATGAGACTTACTCCTA 57.958 38.462 0.00 0.00 44.34 2.94
3327 4753 8.670490 TGGTGATACTATGAGACTTACTCCTAT 58.330 37.037 0.00 0.00 44.34 2.57
3328 4754 9.169592 GGTGATACTATGAGACTTACTCCTATC 57.830 40.741 0.00 0.00 44.34 2.08
3329 4755 9.727859 GTGATACTATGAGACTTACTCCTATCA 57.272 37.037 0.00 0.00 44.34 2.15
3334 4760 9.256228 ACTATGAGACTTACTCCTATCAAAACA 57.744 33.333 0.00 0.00 44.34 2.83
3337 4763 9.965902 ATGAGACTTACTCCTATCAAAACAATT 57.034 29.630 0.00 0.00 44.34 2.32
3338 4764 9.436957 TGAGACTTACTCCTATCAAAACAATTC 57.563 33.333 0.00 0.00 44.34 2.17
3339 4765 9.436957 GAGACTTACTCCTATCAAAACAATTCA 57.563 33.333 0.00 0.00 39.53 2.57
3340 4766 9.442047 AGACTTACTCCTATCAAAACAATTCAG 57.558 33.333 0.00 0.00 0.00 3.02
3341 4767 9.220767 GACTTACTCCTATCAAAACAATTCAGT 57.779 33.333 0.00 0.00 0.00 3.41
3342 4768 9.574516 ACTTACTCCTATCAAAACAATTCAGTT 57.425 29.630 0.00 0.00 0.00 3.16
3359 4785 8.961092 CAATTCAGTTACTATTACATGCATTGC 58.039 33.333 0.00 0.46 0.00 3.56
3360 4786 6.618287 TCAGTTACTATTACATGCATTGCC 57.382 37.500 6.12 0.00 0.00 4.52
3361 4787 5.530915 TCAGTTACTATTACATGCATTGCCC 59.469 40.000 6.12 0.00 0.00 5.36
3362 4788 5.299028 CAGTTACTATTACATGCATTGCCCA 59.701 40.000 6.12 0.00 0.00 5.36
3363 4789 6.016024 CAGTTACTATTACATGCATTGCCCAT 60.016 38.462 6.12 0.00 0.00 4.00
3364 4790 4.859304 ACTATTACATGCATTGCCCATG 57.141 40.909 6.12 6.79 44.28 3.66
3368 4794 4.757019 TTACATGCATTGCCCATGAAAT 57.243 36.364 14.02 0.00 41.97 2.17
3381 4807 4.034510 GCCCATGAAATCGTCTAGTTGAAG 59.965 45.833 0.00 0.00 0.00 3.02
3385 4811 6.811665 CCATGAAATCGTCTAGTTGAAGTACA 59.188 38.462 0.00 0.00 0.00 2.90
3386 4812 7.330946 CCATGAAATCGTCTAGTTGAAGTACAA 59.669 37.037 0.00 0.00 36.02 2.41
3551 4980 9.551734 GTACTCTTTTAAAAACCTCTACTTCCA 57.448 33.333 1.66 0.00 0.00 3.53
3553 4982 8.900781 ACTCTTTTAAAAACCTCTACTTCCAAC 58.099 33.333 1.66 0.00 0.00 3.77
3554 4983 8.810990 TCTTTTAAAAACCTCTACTTCCAACA 57.189 30.769 1.66 0.00 0.00 3.33
3555 4984 9.416284 TCTTTTAAAAACCTCTACTTCCAACAT 57.584 29.630 1.66 0.00 0.00 2.71
3556 4985 9.463443 CTTTTAAAAACCTCTACTTCCAACATG 57.537 33.333 1.66 0.00 0.00 3.21
3657 5089 5.518848 TTCACACACAGAAATTGATTGCT 57.481 34.783 0.00 0.00 0.00 3.91
3710 5142 2.636647 TTCTGCACAAGGATGTCACA 57.363 45.000 0.00 0.00 37.82 3.58
3800 5519 2.621668 GCAAAGTTAAGGAGGCCCTGAT 60.622 50.000 0.00 0.00 43.48 2.90
4022 5744 5.645067 CACAATATGCCAAGAGAAAGACAGA 59.355 40.000 0.00 0.00 0.00 3.41
4028 5750 3.058363 GCCAAGAGAAAGACAGAAAGCAG 60.058 47.826 0.00 0.00 0.00 4.24
4407 7039 1.398958 GGGGTGAAACAGGCAAAGCA 61.399 55.000 0.00 0.00 39.98 3.91
4433 7065 6.207691 CAGGTTTTCTGTTTCTTCTGGAAA 57.792 37.500 0.00 0.00 38.64 3.13
4613 7248 9.605275 TGATTTGGTATTCTAGATGTTGAGAAG 57.395 33.333 0.00 0.00 35.24 2.85
4763 7402 4.437390 CCGCATCTAGGCTTACAAACAAAG 60.437 45.833 0.00 0.00 0.00 2.77
5053 7693 0.407139 AAAAGGATGTGCAGGCCTCT 59.593 50.000 0.00 0.00 0.00 3.69
5104 7744 1.273606 ACGACAGATCCTCCAACACTG 59.726 52.381 0.00 0.00 35.14 3.66
5105 7745 1.546029 CGACAGATCCTCCAACACTGA 59.454 52.381 0.00 0.00 33.53 3.41
5106 7746 2.416566 CGACAGATCCTCCAACACTGAG 60.417 54.545 0.00 0.00 33.53 3.35
5107 7747 1.277557 ACAGATCCTCCAACACTGAGC 59.722 52.381 0.00 0.00 33.53 4.26
5108 7748 1.554160 CAGATCCTCCAACACTGAGCT 59.446 52.381 0.00 0.00 0.00 4.09
5109 7749 2.762887 CAGATCCTCCAACACTGAGCTA 59.237 50.000 0.00 0.00 0.00 3.32
5110 7750 3.387374 CAGATCCTCCAACACTGAGCTAT 59.613 47.826 0.00 0.00 0.00 2.97
5111 7751 4.586421 CAGATCCTCCAACACTGAGCTATA 59.414 45.833 0.00 0.00 0.00 1.31
5112 7752 4.832266 AGATCCTCCAACACTGAGCTATAG 59.168 45.833 0.00 0.00 0.00 1.31
5113 7753 2.695666 TCCTCCAACACTGAGCTATAGC 59.304 50.000 17.33 17.33 42.49 2.97
5129 7769 6.834168 GCTATAGCTCAGACTTAAGATCCT 57.166 41.667 17.75 0.31 38.21 3.24
5130 7770 6.852664 GCTATAGCTCAGACTTAAGATCCTC 58.147 44.000 17.75 0.00 38.21 3.71
5131 7771 6.127730 GCTATAGCTCAGACTTAAGATCCTCC 60.128 46.154 17.75 0.00 38.21 4.30
5132 7772 3.987745 AGCTCAGACTTAAGATCCTCCA 58.012 45.455 10.09 0.00 0.00 3.86
5133 7773 4.357325 AGCTCAGACTTAAGATCCTCCAA 58.643 43.478 10.09 0.00 0.00 3.53
5134 7774 4.161377 AGCTCAGACTTAAGATCCTCCAAC 59.839 45.833 10.09 0.00 0.00 3.77
5135 7775 4.081420 GCTCAGACTTAAGATCCTCCAACA 60.081 45.833 10.09 0.00 0.00 3.33
5136 7776 5.407407 TCAGACTTAAGATCCTCCAACAC 57.593 43.478 10.09 0.00 0.00 3.32
5137 7777 5.087323 TCAGACTTAAGATCCTCCAACACT 58.913 41.667 10.09 0.00 0.00 3.55
5178 7818 0.036952 ACTGCAGGTGGTTCTGATCG 60.037 55.000 19.93 0.00 36.93 3.69
5190 7830 0.815095 TCTGATCGAACTAAGCCGCA 59.185 50.000 0.00 0.00 0.00 5.69
5199 7839 0.179045 ACTAAGCCGCAGCCATTAGG 60.179 55.000 6.06 0.00 41.25 2.69
5210 7850 1.985159 AGCCATTAGGTGAGTTGGTCA 59.015 47.619 0.00 0.00 37.19 4.02
5251 7891 5.012148 GGCAAATTCCTATCCTAGCTGAGTA 59.988 44.000 0.00 0.00 0.00 2.59
5266 7906 2.279741 TGAGTAGGATCAAATGCGTGC 58.720 47.619 0.00 0.00 0.00 5.34
5332 7972 1.977188 GAAACGGAATTTCAAGGGCG 58.023 50.000 0.00 0.00 45.32 6.13
5420 8060 0.882927 TTCCGAGGCGACCAAACAAG 60.883 55.000 0.00 0.00 0.00 3.16
5485 8125 1.005037 GATGTGTGACCAGACGCCA 60.005 57.895 0.00 0.00 0.00 5.69
5566 8206 1.012486 GCAGGTTAACCAGGTCGACG 61.012 60.000 26.26 0.00 38.89 5.12
5587 8227 1.612442 AGCCGCCACCTTCTTAGGA 60.612 57.895 0.00 0.00 45.05 2.94
5670 8310 2.746277 CGCTGGAAGGGGGAAACG 60.746 66.667 0.00 0.00 44.19 3.60
5671 8311 2.754375 GCTGGAAGGGGGAAACGA 59.246 61.111 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.877168 GCTATTGCAGTCCTTGATGGAG 59.123 50.000 0.00 0.00 41.68 3.86
143 145 9.822185 GAGGCATTTTCATTTTTCCATTAGTAT 57.178 29.630 0.00 0.00 0.00 2.12
318 321 3.310193 AGTAGTATTCCCTTCCTCCTGC 58.690 50.000 0.00 0.00 0.00 4.85
320 323 4.447470 CCGTAGTAGTATTCCCTTCCTCCT 60.447 50.000 0.00 0.00 0.00 3.69
365 368 7.704578 AGAGAGAGTAGTATGCTGTACAAAA 57.295 36.000 0.00 0.00 0.00 2.44
367 370 6.319152 GGAAGAGAGAGTAGTATGCTGTACAA 59.681 42.308 0.00 0.00 0.00 2.41
368 371 5.823570 GGAAGAGAGAGTAGTATGCTGTACA 59.176 44.000 0.00 0.00 0.00 2.90
369 372 5.049954 CGGAAGAGAGAGTAGTATGCTGTAC 60.050 48.000 0.00 0.00 0.00 2.90
370 373 5.057819 CGGAAGAGAGAGTAGTATGCTGTA 58.942 45.833 0.00 0.00 0.00 2.74
371 374 3.880490 CGGAAGAGAGAGTAGTATGCTGT 59.120 47.826 0.00 0.00 0.00 4.40
372 375 4.130857 TCGGAAGAGAGAGTAGTATGCTG 58.869 47.826 0.00 0.00 34.84 4.41
373 376 4.425180 TCGGAAGAGAGAGTAGTATGCT 57.575 45.455 0.00 0.00 34.84 3.79
390 393 1.935873 CCGTAGAATCACGTACTCGGA 59.064 52.381 0.00 0.00 40.31 4.55
398 401 4.815040 AGAGATACACCGTAGAATCACG 57.185 45.455 0.00 0.00 41.59 4.35
455 461 2.731976 GTCTCGATTCTTTTGACGTGCT 59.268 45.455 0.00 0.00 0.00 4.40
456 462 2.159827 GGTCTCGATTCTTTTGACGTGC 60.160 50.000 0.00 0.00 0.00 5.34
457 463 3.318017 AGGTCTCGATTCTTTTGACGTG 58.682 45.455 0.00 0.00 0.00 4.49
518 524 2.549992 CCTGCTTGCTGTACCACTACAA 60.550 50.000 0.00 0.00 32.24 2.41
520 526 1.676014 CCCTGCTTGCTGTACCACTAC 60.676 57.143 0.00 0.00 0.00 2.73
521 527 0.613260 CCCTGCTTGCTGTACCACTA 59.387 55.000 0.00 0.00 0.00 2.74
522 528 1.376466 CCCTGCTTGCTGTACCACT 59.624 57.895 0.00 0.00 0.00 4.00
525 531 2.751837 GCCCCTGCTTGCTGTACC 60.752 66.667 0.00 0.00 33.53 3.34
526 532 2.034066 TGCCCCTGCTTGCTGTAC 59.966 61.111 0.00 0.00 38.71 2.90
527 533 2.352422 CTGCCCCTGCTTGCTGTA 59.648 61.111 0.00 0.00 38.71 2.74
564 570 0.740164 CGAGCAGAAGCAGCTGATGT 60.740 55.000 20.43 1.56 43.58 3.06
565 571 2.007549 CGAGCAGAAGCAGCTGATG 58.992 57.895 20.43 10.92 43.58 3.07
566 572 1.814586 GCGAGCAGAAGCAGCTGAT 60.815 57.895 20.43 8.90 43.58 2.90
567 573 2.433838 GCGAGCAGAAGCAGCTGA 60.434 61.111 20.43 0.00 43.58 4.26
608 1442 1.954146 TTCGTTCCTCTGTGCGTGC 60.954 57.895 0.00 0.00 0.00 5.34
629 1463 0.657368 CCGCATTTAAATCGCTCGCC 60.657 55.000 15.72 0.00 0.00 5.54
771 1605 1.790818 TATATGGTGGCACCGTGGTA 58.209 50.000 35.84 25.51 42.58 3.25
817 1657 1.755959 CTGACTGACTGGCTGCTCTAT 59.244 52.381 0.00 0.00 0.00 1.98
857 1697 1.066605 CCGAATGACCCTACTGTACCG 59.933 57.143 0.00 0.00 0.00 4.02
861 1701 1.515954 CGCCGAATGACCCTACTGT 59.484 57.895 0.00 0.00 0.00 3.55
867 1707 0.818040 ATTAAGGCGCCGAATGACCC 60.818 55.000 23.20 0.00 0.00 4.46
869 1709 1.527311 GAGATTAAGGCGCCGAATGAC 59.473 52.381 27.75 18.62 0.00 3.06
870 1710 1.865865 GAGATTAAGGCGCCGAATGA 58.134 50.000 27.75 14.16 0.00 2.57
898 1738 1.968540 GCAGGAGGTTGGTGTCTGC 60.969 63.158 0.00 0.00 42.89 4.26
970 1817 1.198178 GACTAGACAGGCCGATCGATC 59.802 57.143 18.66 15.68 0.00 3.69
971 1818 1.202830 AGACTAGACAGGCCGATCGAT 60.203 52.381 18.66 0.00 0.00 3.59
972 1819 0.180642 AGACTAGACAGGCCGATCGA 59.819 55.000 18.66 0.00 0.00 3.59
973 1820 1.801771 CTAGACTAGACAGGCCGATCG 59.198 57.143 8.51 8.51 0.00 3.69
1470 2323 2.653702 CGGATGATCTCCTCGCCC 59.346 66.667 8.86 0.00 42.47 6.13
1719 2572 4.329545 TCCTCGTTGCACTGCCCC 62.330 66.667 0.00 0.00 0.00 5.80
1782 2635 1.371558 GTTGAGCTTGGGGACGACT 59.628 57.895 0.00 0.00 0.00 4.18
1971 2824 3.972227 CACCTGTGTGCTGGCTAC 58.028 61.111 0.00 0.00 37.23 3.58
1981 2834 0.602106 CTCACTCCTGTGCACCTGTG 60.602 60.000 15.69 16.49 43.49 3.66
1982 2835 1.050988 ACTCACTCCTGTGCACCTGT 61.051 55.000 15.69 4.86 43.49 4.00
1983 2836 0.969149 TACTCACTCCTGTGCACCTG 59.031 55.000 15.69 7.19 43.49 4.00
1994 2847 4.038522 TGAATGCATCCTAGCTACTCACTC 59.961 45.833 0.00 0.00 34.99 3.51
2069 2941 4.090057 GCCGTGCTTCTCGTTGCC 62.090 66.667 0.00 0.00 0.00 4.52
2204 3095 2.490903 CTCAGAAATGTGAAAGGGGCTG 59.509 50.000 0.00 0.00 0.00 4.85
2207 3101 2.821969 CCACTCAGAAATGTGAAAGGGG 59.178 50.000 0.00 0.00 36.38 4.79
2227 3121 7.773149 ACAGATAAAGTCACTACTACATGACC 58.227 38.462 0.00 0.00 45.28 4.02
2230 3124 7.772166 TGGACAGATAAAGTCACTACTACATG 58.228 38.462 0.00 0.00 37.74 3.21
2373 3282 1.005294 CGTACTTGTCGGGGTTCGTG 61.005 60.000 0.00 0.00 40.32 4.35
2508 3417 7.248976 ACAGTCATCCCTCCATATATTGTCTA 58.751 38.462 0.00 0.00 0.00 2.59
2618 3527 3.936453 TCATTTACAGTCCATTGCGTACC 59.064 43.478 0.00 0.00 0.00 3.34
2643 3552 7.961325 ATAACATTACAAAACTGGCAAAAGG 57.039 32.000 0.00 0.00 0.00 3.11
2741 3875 5.155509 TCACATCAAAAACTCTCACAACG 57.844 39.130 0.00 0.00 0.00 4.10
2744 3878 4.823442 AGCATCACATCAAAAACTCTCACA 59.177 37.500 0.00 0.00 0.00 3.58
2836 4247 3.149981 GGGAGTATATTCCAAAGCCAGC 58.850 50.000 15.53 0.00 39.09 4.85
2861 4272 3.243805 GGAGGGAGCGAGTATTTAGGAAC 60.244 52.174 0.00 0.00 0.00 3.62
2873 4284 1.808531 TTTTCGAACGGAGGGAGCGA 61.809 55.000 0.00 0.00 0.00 4.93
2876 4287 0.796927 GCTTTTTCGAACGGAGGGAG 59.203 55.000 0.00 0.00 0.00 4.30
2878 4289 1.235724 AAGCTTTTTCGAACGGAGGG 58.764 50.000 0.00 0.00 0.00 4.30
2879 4290 4.403453 CATTAAGCTTTTTCGAACGGAGG 58.597 43.478 3.20 0.00 0.00 4.30
2880 4291 4.153475 TCCATTAAGCTTTTTCGAACGGAG 59.847 41.667 3.20 0.00 0.00 4.63
2881 4292 4.066490 TCCATTAAGCTTTTTCGAACGGA 58.934 39.130 3.20 0.00 0.00 4.69
2882 4293 4.413495 TCCATTAAGCTTTTTCGAACGG 57.587 40.909 3.20 0.00 0.00 4.44
2883 4294 5.564127 GTCTTCCATTAAGCTTTTTCGAACG 59.436 40.000 3.20 0.00 34.97 3.95
2884 4295 6.435428 TGTCTTCCATTAAGCTTTTTCGAAC 58.565 36.000 3.20 0.00 34.97 3.95
2885 4296 6.627395 TGTCTTCCATTAAGCTTTTTCGAA 57.373 33.333 3.20 0.00 34.97 3.71
2886 4297 6.627395 TTGTCTTCCATTAAGCTTTTTCGA 57.373 33.333 3.20 0.00 34.97 3.71
2887 4298 5.343325 GCTTGTCTTCCATTAAGCTTTTTCG 59.657 40.000 3.20 0.00 41.60 3.46
2888 4299 6.696825 GCTTGTCTTCCATTAAGCTTTTTC 57.303 37.500 3.20 0.00 41.60 2.29
2894 4305 5.635417 AGAAAGCTTGTCTTCCATTAAGC 57.365 39.130 0.00 0.00 44.32 3.09
2895 4306 5.163814 CCGAGAAAGCTTGTCTTCCATTAAG 60.164 44.000 0.00 0.00 32.88 1.85
2896 4307 4.695455 CCGAGAAAGCTTGTCTTCCATTAA 59.305 41.667 0.00 0.00 32.88 1.40
2897 4308 4.020573 TCCGAGAAAGCTTGTCTTCCATTA 60.021 41.667 0.00 0.00 32.88 1.90
2898 4309 3.077359 CCGAGAAAGCTTGTCTTCCATT 58.923 45.455 0.00 0.00 32.88 3.16
2899 4310 2.303022 TCCGAGAAAGCTTGTCTTCCAT 59.697 45.455 0.00 0.00 32.88 3.41
2900 4311 1.691976 TCCGAGAAAGCTTGTCTTCCA 59.308 47.619 0.00 0.00 32.88 3.53
2901 4312 2.070028 GTCCGAGAAAGCTTGTCTTCC 58.930 52.381 0.00 0.00 32.88 3.46
2902 4313 2.734079 CTGTCCGAGAAAGCTTGTCTTC 59.266 50.000 0.00 0.00 32.88 2.87
2903 4314 2.365617 TCTGTCCGAGAAAGCTTGTCTT 59.634 45.455 0.00 0.00 36.34 3.01
2904 4315 1.964223 TCTGTCCGAGAAAGCTTGTCT 59.036 47.619 0.00 5.26 0.00 3.41
2905 4316 2.029828 TCTCTGTCCGAGAAAGCTTGTC 60.030 50.000 0.00 0.00 45.55 3.18
2906 4317 1.964223 TCTCTGTCCGAGAAAGCTTGT 59.036 47.619 0.00 0.00 45.55 3.16
2907 4318 2.732412 TCTCTGTCCGAGAAAGCTTG 57.268 50.000 0.00 0.00 45.55 4.01
2941 4352 7.103641 TGGAGTAGTTCATAGCGAAATCTTTT 58.896 34.615 0.00 0.00 34.69 2.27
2951 4362 4.299978 GAACGGATGGAGTAGTTCATAGC 58.700 47.826 0.00 0.00 41.66 2.97
2964 4375 5.126067 AGTCATCTATTTTGGAACGGATGG 58.874 41.667 0.00 0.00 32.58 3.51
2966 4377 5.989477 TGAGTCATCTATTTTGGAACGGAT 58.011 37.500 0.00 0.00 0.00 4.18
3017 4428 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
3021 4432 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
3022 4433 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
3023 4434 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
3026 4437 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
3028 4439 6.106673 TCCTCCGTTTCAAAATAGATGACTC 58.893 40.000 0.00 0.00 0.00 3.36
3029 4440 6.049955 TCCTCCGTTTCAAAATAGATGACT 57.950 37.500 0.00 0.00 0.00 3.41
3030 4441 6.371825 ACTTCCTCCGTTTCAAAATAGATGAC 59.628 38.462 0.00 0.00 0.00 3.06
3033 4444 7.391620 TGTACTTCCTCCGTTTCAAAATAGAT 58.608 34.615 0.00 0.00 0.00 1.98
3034 4445 6.761312 TGTACTTCCTCCGTTTCAAAATAGA 58.239 36.000 0.00 0.00 0.00 1.98
3035 4446 7.611213 ATGTACTTCCTCCGTTTCAAAATAG 57.389 36.000 0.00 0.00 0.00 1.73
3037 4448 6.938030 TGTATGTACTTCCTCCGTTTCAAAAT 59.062 34.615 0.00 0.00 0.00 1.82
3038 4449 6.289834 TGTATGTACTTCCTCCGTTTCAAAA 58.710 36.000 0.00 0.00 0.00 2.44
3039 4450 5.856156 TGTATGTACTTCCTCCGTTTCAAA 58.144 37.500 0.00 0.00 0.00 2.69
3040 4451 5.471556 TGTATGTACTTCCTCCGTTTCAA 57.528 39.130 0.00 0.00 0.00 2.69
3041 4452 5.471556 TTGTATGTACTTCCTCCGTTTCA 57.528 39.130 0.00 0.00 0.00 2.69
3044 4455 4.251268 GCTTTGTATGTACTTCCTCCGTT 58.749 43.478 0.00 0.00 0.00 4.44
3046 4457 3.195661 GGCTTTGTATGTACTTCCTCCG 58.804 50.000 0.00 0.00 0.00 4.63
3048 4459 6.374333 TCATTTGGCTTTGTATGTACTTCCTC 59.626 38.462 0.00 0.00 0.00 3.71
3050 4461 6.151144 ACTCATTTGGCTTTGTATGTACTTCC 59.849 38.462 0.00 0.00 0.00 3.46
3051 4462 7.145932 ACTCATTTGGCTTTGTATGTACTTC 57.854 36.000 0.00 0.00 0.00 3.01
3052 4463 8.630054 TTACTCATTTGGCTTTGTATGTACTT 57.370 30.769 0.00 0.00 0.00 2.24
3062 4488 7.885399 AGAGTGTAGATTTACTCATTTGGCTTT 59.115 33.333 7.09 0.00 44.41 3.51
3117 4543 9.383519 TGATTGACTTTAGATTCCACTATGAAC 57.616 33.333 0.00 0.00 0.00 3.18
3123 4549 8.762645 TCACTATGATTGACTTTAGATTCCACT 58.237 33.333 0.00 0.00 0.00 4.00
3124 4550 8.948631 TCACTATGATTGACTTTAGATTCCAC 57.051 34.615 0.00 0.00 0.00 4.02
3125 4551 8.762645 ACTCACTATGATTGACTTTAGATTCCA 58.237 33.333 0.00 0.00 0.00 3.53
3129 4555 9.814899 CTCAACTCACTATGATTGACTTTAGAT 57.185 33.333 0.00 0.00 0.00 1.98
3130 4556 9.025041 TCTCAACTCACTATGATTGACTTTAGA 57.975 33.333 0.00 0.00 0.00 2.10
3131 4557 9.814899 ATCTCAACTCACTATGATTGACTTTAG 57.185 33.333 0.00 0.00 0.00 1.85
3132 4558 9.591792 CATCTCAACTCACTATGATTGACTTTA 57.408 33.333 0.00 0.00 0.00 1.85
3133 4559 8.316946 TCATCTCAACTCACTATGATTGACTTT 58.683 33.333 0.00 0.00 0.00 2.66
3134 4560 7.845037 TCATCTCAACTCACTATGATTGACTT 58.155 34.615 0.00 0.00 0.00 3.01
3135 4561 7.415592 TCATCTCAACTCACTATGATTGACT 57.584 36.000 0.00 0.00 0.00 3.41
3136 4562 8.659925 AATCATCTCAACTCACTATGATTGAC 57.340 34.615 7.78 0.00 42.64 3.18
3143 4569 5.292834 CGCAACAATCATCTCAACTCACTAT 59.707 40.000 0.00 0.00 0.00 2.12
3155 4581 2.419673 TCCATCACACGCAACAATCATC 59.580 45.455 0.00 0.00 0.00 2.92
3156 4582 2.435422 TCCATCACACGCAACAATCAT 58.565 42.857 0.00 0.00 0.00 2.45
3157 4583 1.889545 TCCATCACACGCAACAATCA 58.110 45.000 0.00 0.00 0.00 2.57
3158 4584 4.818534 ATATCCATCACACGCAACAATC 57.181 40.909 0.00 0.00 0.00 2.67
3159 4585 4.756642 CCTATATCCATCACACGCAACAAT 59.243 41.667 0.00 0.00 0.00 2.71
3160 4586 4.126437 CCTATATCCATCACACGCAACAA 58.874 43.478 0.00 0.00 0.00 2.83
3161 4587 3.386402 TCCTATATCCATCACACGCAACA 59.614 43.478 0.00 0.00 0.00 3.33
3162 4588 3.990092 TCCTATATCCATCACACGCAAC 58.010 45.455 0.00 0.00 0.00 4.17
3163 4589 3.554960 GCTCCTATATCCATCACACGCAA 60.555 47.826 0.00 0.00 0.00 4.85
3164 4590 2.029020 GCTCCTATATCCATCACACGCA 60.029 50.000 0.00 0.00 0.00 5.24
3165 4591 2.611518 GCTCCTATATCCATCACACGC 58.388 52.381 0.00 0.00 0.00 5.34
3166 4592 2.229062 ACGCTCCTATATCCATCACACG 59.771 50.000 0.00 0.00 0.00 4.49
3167 4593 3.670895 CGACGCTCCTATATCCATCACAC 60.671 52.174 0.00 0.00 0.00 3.82
3168 4594 2.488153 CGACGCTCCTATATCCATCACA 59.512 50.000 0.00 0.00 0.00 3.58
3169 4595 2.159366 CCGACGCTCCTATATCCATCAC 60.159 54.545 0.00 0.00 0.00 3.06
3170 4596 2.092323 CCGACGCTCCTATATCCATCA 58.908 52.381 0.00 0.00 0.00 3.07
3171 4597 1.202313 GCCGACGCTCCTATATCCATC 60.202 57.143 0.00 0.00 0.00 3.51
3172 4598 0.818296 GCCGACGCTCCTATATCCAT 59.182 55.000 0.00 0.00 0.00 3.41
3173 4599 1.248785 GGCCGACGCTCCTATATCCA 61.249 60.000 0.00 0.00 34.44 3.41
3174 4600 0.966370 AGGCCGACGCTCCTATATCC 60.966 60.000 0.00 0.00 34.44 2.59
3175 4601 0.171455 CAGGCCGACGCTCCTATATC 59.829 60.000 0.00 0.00 34.44 1.63
3176 4602 1.251527 CCAGGCCGACGCTCCTATAT 61.252 60.000 0.00 0.00 34.44 0.86
3177 4603 1.901948 CCAGGCCGACGCTCCTATA 60.902 63.158 0.00 0.00 34.44 1.31
3178 4604 3.227276 CCAGGCCGACGCTCCTAT 61.227 66.667 0.00 0.00 34.44 2.57
3191 4617 3.324930 TCCTCAGGTGCAGCCAGG 61.325 66.667 20.72 20.72 40.61 4.45
3192 4618 2.046507 GTCCTCAGGTGCAGCCAG 60.047 66.667 13.29 8.88 40.61 4.85
3193 4619 2.527624 AGTCCTCAGGTGCAGCCA 60.528 61.111 13.29 0.00 40.61 4.75
3194 4620 2.046507 CAGTCCTCAGGTGCAGCC 60.047 66.667 13.29 4.65 37.58 4.85
3195 4621 1.079266 CTCAGTCCTCAGGTGCAGC 60.079 63.158 8.11 8.11 0.00 5.25
3196 4622 0.531657 CTCTCAGTCCTCAGGTGCAG 59.468 60.000 0.00 0.00 0.00 4.41
3197 4623 0.178950 ACTCTCAGTCCTCAGGTGCA 60.179 55.000 0.00 0.00 0.00 4.57
3198 4624 0.530288 GACTCTCAGTCCTCAGGTGC 59.470 60.000 0.00 0.00 39.28 5.01
3199 4625 2.214376 AGACTCTCAGTCCTCAGGTG 57.786 55.000 0.00 0.00 46.18 4.00
3200 4626 2.916934 ACTAGACTCTCAGTCCTCAGGT 59.083 50.000 0.00 0.00 46.18 4.00
3201 4627 3.644966 ACTAGACTCTCAGTCCTCAGG 57.355 52.381 0.00 0.00 46.18 3.86
3202 4628 5.353394 ACTACTAGACTCTCAGTCCTCAG 57.647 47.826 0.00 0.00 46.18 3.35
3203 4629 6.384595 ACATACTACTAGACTCTCAGTCCTCA 59.615 42.308 0.00 0.00 46.18 3.86
3204 4630 6.823497 ACATACTACTAGACTCTCAGTCCTC 58.177 44.000 0.00 0.00 46.18 3.71
3205 4631 6.818281 ACATACTACTAGACTCTCAGTCCT 57.182 41.667 0.00 0.00 46.18 3.85
3206 4632 7.277396 AGAACATACTACTAGACTCTCAGTCC 58.723 42.308 0.00 0.00 46.18 3.85
3207 4633 8.726870 AAGAACATACTACTAGACTCTCAGTC 57.273 38.462 0.00 0.00 45.38 3.51
3208 4634 9.169592 GAAAGAACATACTACTAGACTCTCAGT 57.830 37.037 0.00 0.00 0.00 3.41
3209 4635 9.391006 AGAAAGAACATACTACTAGACTCTCAG 57.609 37.037 0.00 0.00 0.00 3.35
3210 4636 9.168451 CAGAAAGAACATACTACTAGACTCTCA 57.832 37.037 0.00 0.00 0.00 3.27
3211 4637 9.386010 TCAGAAAGAACATACTACTAGACTCTC 57.614 37.037 0.00 0.00 0.00 3.20
3212 4638 9.391006 CTCAGAAAGAACATACTACTAGACTCT 57.609 37.037 0.00 0.00 0.00 3.24
3213 4639 8.617809 CCTCAGAAAGAACATACTACTAGACTC 58.382 40.741 0.00 0.00 0.00 3.36
3214 4640 8.330247 TCCTCAGAAAGAACATACTACTAGACT 58.670 37.037 0.00 0.00 0.00 3.24
3215 4641 8.508883 TCCTCAGAAAGAACATACTACTAGAC 57.491 38.462 0.00 0.00 0.00 2.59
3216 4642 9.529823 TTTCCTCAGAAAGAACATACTACTAGA 57.470 33.333 0.00 0.00 37.07 2.43
3222 4648 9.793259 TGTAATTTTCCTCAGAAAGAACATACT 57.207 29.630 0.00 0.00 42.78 2.12
3224 4650 9.793259 ACTGTAATTTTCCTCAGAAAGAACATA 57.207 29.630 0.00 0.00 42.78 2.29
3225 4651 8.697507 ACTGTAATTTTCCTCAGAAAGAACAT 57.302 30.769 0.00 0.00 42.78 2.71
3226 4652 8.519799 AACTGTAATTTTCCTCAGAAAGAACA 57.480 30.769 0.00 0.00 42.78 3.18
3227 4653 9.452065 GAAACTGTAATTTTCCTCAGAAAGAAC 57.548 33.333 0.00 0.00 42.78 3.01
3228 4654 9.408648 AGAAACTGTAATTTTCCTCAGAAAGAA 57.591 29.630 0.00 0.00 42.78 2.52
3229 4655 8.980481 AGAAACTGTAATTTTCCTCAGAAAGA 57.020 30.769 0.00 0.00 42.78 2.52
3230 4656 8.293157 GGAGAAACTGTAATTTTCCTCAGAAAG 58.707 37.037 0.00 0.00 42.78 2.62
3231 4657 7.777910 TGGAGAAACTGTAATTTTCCTCAGAAA 59.222 33.333 0.00 0.00 40.26 2.52
3232 4658 7.287061 TGGAGAAACTGTAATTTTCCTCAGAA 58.713 34.615 0.00 0.00 34.07 3.02
3233 4659 6.837312 TGGAGAAACTGTAATTTTCCTCAGA 58.163 36.000 0.00 0.00 34.07 3.27
3234 4660 7.013274 TGTTGGAGAAACTGTAATTTTCCTCAG 59.987 37.037 4.15 0.00 39.70 3.35
3235 4661 6.831353 TGTTGGAGAAACTGTAATTTTCCTCA 59.169 34.615 4.15 1.99 39.70 3.86
3236 4662 7.272037 TGTTGGAGAAACTGTAATTTTCCTC 57.728 36.000 4.15 0.00 39.70 3.71
3237 4663 7.123547 TGTTGTTGGAGAAACTGTAATTTTCCT 59.876 33.333 4.15 0.00 39.70 3.36
3238 4664 7.262048 TGTTGTTGGAGAAACTGTAATTTTCC 58.738 34.615 0.00 0.00 39.70 3.13
3239 4665 8.696410 TTGTTGTTGGAGAAACTGTAATTTTC 57.304 30.769 0.00 0.00 39.70 2.29
3240 4666 9.665719 ATTTGTTGTTGGAGAAACTGTAATTTT 57.334 25.926 0.00 0.00 39.70 1.82
3241 4667 9.313118 GATTTGTTGTTGGAGAAACTGTAATTT 57.687 29.630 0.00 0.00 39.70 1.82
3242 4668 8.474025 TGATTTGTTGTTGGAGAAACTGTAATT 58.526 29.630 0.00 0.00 39.70 1.40
3243 4669 8.006298 TGATTTGTTGTTGGAGAAACTGTAAT 57.994 30.769 0.00 0.00 39.70 1.89
3244 4670 7.397892 TGATTTGTTGTTGGAGAAACTGTAA 57.602 32.000 0.00 0.00 39.70 2.41
3245 4671 7.397892 TTGATTTGTTGTTGGAGAAACTGTA 57.602 32.000 0.00 0.00 39.70 2.74
3246 4672 5.913137 TGATTTGTTGTTGGAGAAACTGT 57.087 34.783 0.00 0.00 39.70 3.55
3247 4673 5.750067 CCTTGATTTGTTGTTGGAGAAACTG 59.250 40.000 0.00 0.00 39.70 3.16
3248 4674 5.656416 TCCTTGATTTGTTGTTGGAGAAACT 59.344 36.000 0.00 0.00 39.70 2.66
3249 4675 5.901552 TCCTTGATTTGTTGTTGGAGAAAC 58.098 37.500 0.00 0.00 39.41 2.78
3250 4676 6.729690 ATCCTTGATTTGTTGTTGGAGAAA 57.270 33.333 0.00 0.00 0.00 2.52
3251 4677 7.004086 AGTATCCTTGATTTGTTGTTGGAGAA 58.996 34.615 0.00 0.00 0.00 2.87
3252 4678 6.542821 AGTATCCTTGATTTGTTGTTGGAGA 58.457 36.000 0.00 0.00 0.00 3.71
3253 4679 6.824305 AGTATCCTTGATTTGTTGTTGGAG 57.176 37.500 0.00 0.00 0.00 3.86
3254 4680 6.072728 CGAAGTATCCTTGATTTGTTGTTGGA 60.073 38.462 0.00 0.00 0.00 3.53
3255 4681 6.086222 CGAAGTATCCTTGATTTGTTGTTGG 58.914 40.000 0.00 0.00 0.00 3.77
3256 4682 6.086222 CCGAAGTATCCTTGATTTGTTGTTG 58.914 40.000 0.00 0.00 0.00 3.33
3257 4683 5.183140 CCCGAAGTATCCTTGATTTGTTGTT 59.817 40.000 0.00 0.00 0.00 2.83
3258 4684 4.700213 CCCGAAGTATCCTTGATTTGTTGT 59.300 41.667 0.00 0.00 0.00 3.32
3259 4685 4.941263 TCCCGAAGTATCCTTGATTTGTTG 59.059 41.667 0.00 0.00 0.00 3.33
3260 4686 5.174037 TCCCGAAGTATCCTTGATTTGTT 57.826 39.130 0.00 0.00 0.00 2.83
3261 4687 4.837093 TCCCGAAGTATCCTTGATTTGT 57.163 40.909 0.00 0.00 0.00 2.83
3262 4688 6.699575 AAATCCCGAAGTATCCTTGATTTG 57.300 37.500 0.00 0.00 33.23 2.32
3263 4689 7.718334 AAAAATCCCGAAGTATCCTTGATTT 57.282 32.000 0.00 0.00 34.67 2.17
3285 4711 3.070748 TCACCATGAAGATCGCGAAAAA 58.929 40.909 15.24 0.00 0.00 1.94
3286 4712 2.694213 TCACCATGAAGATCGCGAAAA 58.306 42.857 15.24 0.00 0.00 2.29
3287 4713 2.378445 TCACCATGAAGATCGCGAAA 57.622 45.000 15.24 0.00 0.00 3.46
3288 4714 2.602257 ATCACCATGAAGATCGCGAA 57.398 45.000 15.24 0.00 0.00 4.70
3289 4715 2.623416 AGTATCACCATGAAGATCGCGA 59.377 45.455 13.09 13.09 0.00 5.87
3290 4716 3.018598 AGTATCACCATGAAGATCGCG 57.981 47.619 0.00 0.00 0.00 5.87
3291 4717 5.714047 TCATAGTATCACCATGAAGATCGC 58.286 41.667 0.00 0.00 0.00 4.58
3292 4718 7.026562 GTCTCATAGTATCACCATGAAGATCG 58.973 42.308 0.00 0.00 0.00 3.69
3293 4719 8.121305 AGTCTCATAGTATCACCATGAAGATC 57.879 38.462 0.00 0.00 0.00 2.75
3294 4720 8.489676 AAGTCTCATAGTATCACCATGAAGAT 57.510 34.615 0.00 0.00 0.00 2.40
3295 4721 7.904558 AAGTCTCATAGTATCACCATGAAGA 57.095 36.000 0.00 0.00 0.00 2.87
3296 4722 8.855110 AGTAAGTCTCATAGTATCACCATGAAG 58.145 37.037 0.00 0.00 0.00 3.02
3297 4723 8.768501 AGTAAGTCTCATAGTATCACCATGAA 57.231 34.615 0.00 0.00 0.00 2.57
3298 4724 7.448777 GGAGTAAGTCTCATAGTATCACCATGA 59.551 40.741 0.00 0.00 44.40 3.07
3299 4725 7.450014 AGGAGTAAGTCTCATAGTATCACCATG 59.550 40.741 0.00 0.00 44.40 3.66
3300 4726 7.531317 AGGAGTAAGTCTCATAGTATCACCAT 58.469 38.462 0.00 0.00 44.40 3.55
3301 4727 6.912426 AGGAGTAAGTCTCATAGTATCACCA 58.088 40.000 0.00 0.00 44.40 4.17
3302 4728 9.169592 GATAGGAGTAAGTCTCATAGTATCACC 57.830 40.741 0.00 0.00 41.66 4.02
3303 4729 9.727859 TGATAGGAGTAAGTCTCATAGTATCAC 57.272 37.037 0.00 0.00 41.66 3.06
3308 4734 9.256228 TGTTTTGATAGGAGTAAGTCTCATAGT 57.744 33.333 0.00 0.00 41.66 2.12
3311 4737 9.965902 AATTGTTTTGATAGGAGTAAGTCTCAT 57.034 29.630 0.00 0.00 44.40 2.90
3312 4738 9.436957 GAATTGTTTTGATAGGAGTAAGTCTCA 57.563 33.333 0.00 0.00 44.40 3.27
3313 4739 9.436957 TGAATTGTTTTGATAGGAGTAAGTCTC 57.563 33.333 0.00 0.00 42.07 3.36
3314 4740 9.442047 CTGAATTGTTTTGATAGGAGTAAGTCT 57.558 33.333 0.00 0.00 0.00 3.24
3315 4741 9.220767 ACTGAATTGTTTTGATAGGAGTAAGTC 57.779 33.333 0.00 0.00 0.00 3.01
3316 4742 9.574516 AACTGAATTGTTTTGATAGGAGTAAGT 57.425 29.630 0.00 0.00 0.00 2.24
3333 4759 8.961092 GCAATGCATGTAATAGTAACTGAATTG 58.039 33.333 0.00 8.56 0.00 2.32
3334 4760 8.137437 GGCAATGCATGTAATAGTAACTGAATT 58.863 33.333 7.79 0.00 0.00 2.17
3335 4761 7.255590 GGGCAATGCATGTAATAGTAACTGAAT 60.256 37.037 7.79 0.00 0.00 2.57
3336 4762 6.039270 GGGCAATGCATGTAATAGTAACTGAA 59.961 38.462 7.79 0.00 0.00 3.02
3337 4763 5.530915 GGGCAATGCATGTAATAGTAACTGA 59.469 40.000 7.79 0.00 0.00 3.41
3338 4764 5.299028 TGGGCAATGCATGTAATAGTAACTG 59.701 40.000 7.79 0.00 0.00 3.16
3339 4765 5.445069 TGGGCAATGCATGTAATAGTAACT 58.555 37.500 7.79 0.00 0.00 2.24
3340 4766 5.766150 TGGGCAATGCATGTAATAGTAAC 57.234 39.130 7.79 0.00 0.00 2.50
3341 4767 6.067350 TCATGGGCAATGCATGTAATAGTAA 58.933 36.000 7.79 0.00 36.11 2.24
3342 4768 5.629125 TCATGGGCAATGCATGTAATAGTA 58.371 37.500 7.79 0.00 36.11 1.82
3343 4769 4.472496 TCATGGGCAATGCATGTAATAGT 58.528 39.130 7.79 0.00 36.11 2.12
3344 4770 5.456548 TTCATGGGCAATGCATGTAATAG 57.543 39.130 7.79 0.00 36.11 1.73
3345 4771 5.866159 TTTCATGGGCAATGCATGTAATA 57.134 34.783 7.79 0.00 36.11 0.98
3346 4772 4.757019 TTTCATGGGCAATGCATGTAAT 57.243 36.364 7.79 0.00 36.11 1.89
3347 4773 4.695396 GATTTCATGGGCAATGCATGTAA 58.305 39.130 7.79 3.92 36.11 2.41
3348 4774 3.243468 CGATTTCATGGGCAATGCATGTA 60.243 43.478 7.79 0.00 36.11 2.29
3349 4775 2.482316 CGATTTCATGGGCAATGCATGT 60.482 45.455 7.79 0.00 36.11 3.21
3350 4776 2.131972 CGATTTCATGGGCAATGCATG 58.868 47.619 7.79 3.18 36.11 4.06
3351 4777 1.758280 ACGATTTCATGGGCAATGCAT 59.242 42.857 7.79 0.00 36.11 3.96
3352 4778 1.134753 GACGATTTCATGGGCAATGCA 59.865 47.619 7.79 0.00 36.11 3.96
3353 4779 1.406539 AGACGATTTCATGGGCAATGC 59.593 47.619 0.00 0.00 36.11 3.56
3354 4780 3.879295 ACTAGACGATTTCATGGGCAATG 59.121 43.478 0.00 0.00 37.66 2.82
3355 4781 4.156455 ACTAGACGATTTCATGGGCAAT 57.844 40.909 0.00 0.00 0.00 3.56
3356 4782 3.627395 ACTAGACGATTTCATGGGCAA 57.373 42.857 0.00 0.00 0.00 4.52
3357 4783 3.055458 TCAACTAGACGATTTCATGGGCA 60.055 43.478 0.00 0.00 0.00 5.36
3358 4784 3.531538 TCAACTAGACGATTTCATGGGC 58.468 45.455 0.00 0.00 0.00 5.36
3359 4785 5.178797 ACTTCAACTAGACGATTTCATGGG 58.821 41.667 0.00 0.00 0.00 4.00
3360 4786 6.811665 TGTACTTCAACTAGACGATTTCATGG 59.188 38.462 0.00 0.00 0.00 3.66
3361 4787 7.812309 TGTACTTCAACTAGACGATTTCATG 57.188 36.000 0.00 0.00 0.00 3.07
3362 4788 8.827177 TTTGTACTTCAACTAGACGATTTCAT 57.173 30.769 0.00 0.00 35.61 2.57
3363 4789 8.651391 TTTTGTACTTCAACTAGACGATTTCA 57.349 30.769 0.00 0.00 35.61 2.69
3364 4790 9.366513 GTTTTTGTACTTCAACTAGACGATTTC 57.633 33.333 0.00 0.00 35.61 2.17
3368 4794 7.760794 TCAAGTTTTTGTACTTCAACTAGACGA 59.239 33.333 0.00 0.00 36.24 4.20
3381 4807 4.803613 CCTTGCAGGTTCAAGTTTTTGTAC 59.196 41.667 0.00 0.00 41.29 2.90
3555 4984 6.473131 GCGAAATTGTTGATATGAGCAAATCA 59.527 34.615 0.00 0.00 43.70 2.57
3556 4985 6.473131 TGCGAAATTGTTGATATGAGCAAATC 59.527 34.615 0.00 0.00 0.00 2.17
3687 5119 2.229543 TGACATCCTTGTGCAGAAATGC 59.770 45.455 7.89 3.21 35.79 3.56
3710 5142 9.434420 GATGCTATGCTAGATGTAGAAGAAAAT 57.566 33.333 0.05 0.00 0.00 1.82
4022 5744 4.819105 TGTAGTACCACATAGCTGCTTT 57.181 40.909 7.79 0.00 0.00 3.51
4626 7261 7.707104 AGTCAAACCTTGTAAACTTGATCAAG 58.293 34.615 29.74 29.74 43.79 3.02
4630 7265 7.556275 TCTGAAGTCAAACCTTGTAAACTTGAT 59.444 33.333 0.00 0.00 28.90 2.57
4763 7402 7.805071 CCAATAAAGTCATCTTGAGTTTGACAC 59.195 37.037 16.71 0.00 46.23 3.67
5053 7693 4.729881 ACTTTATGGGTATTGCTTCCCCTA 59.270 41.667 0.00 0.00 42.80 3.53
5105 7745 8.233550 GGAGGATCTTAAGTCTGAGCTATAGCT 61.234 44.444 27.21 27.21 45.78 3.32
5106 7746 6.127730 GGAGGATCTTAAGTCTGAGCTATAGC 60.128 46.154 17.33 17.33 36.84 2.97
5107 7747 6.945435 TGGAGGATCTTAAGTCTGAGCTATAG 59.055 42.308 1.63 0.00 33.73 1.31
5108 7748 6.853490 TGGAGGATCTTAAGTCTGAGCTATA 58.147 40.000 1.63 0.00 33.73 1.31
5109 7749 5.710646 TGGAGGATCTTAAGTCTGAGCTAT 58.289 41.667 1.63 0.00 33.73 2.97
5110 7750 5.130705 TGGAGGATCTTAAGTCTGAGCTA 57.869 43.478 1.63 0.00 33.73 3.32
5111 7751 3.987745 TGGAGGATCTTAAGTCTGAGCT 58.012 45.455 1.63 0.00 33.73 4.09
5112 7752 4.081420 TGTTGGAGGATCTTAAGTCTGAGC 60.081 45.833 1.63 0.00 33.73 4.26
5113 7753 5.186797 AGTGTTGGAGGATCTTAAGTCTGAG 59.813 44.000 1.63 0.00 33.73 3.35
5114 7754 5.047021 CAGTGTTGGAGGATCTTAAGTCTGA 60.047 44.000 1.63 0.00 33.73 3.27
5115 7755 5.047021 TCAGTGTTGGAGGATCTTAAGTCTG 60.047 44.000 1.63 0.00 33.73 3.51
5116 7756 5.087323 TCAGTGTTGGAGGATCTTAAGTCT 58.913 41.667 1.63 0.00 33.73 3.24
5117 7757 5.407407 TCAGTGTTGGAGGATCTTAAGTC 57.593 43.478 1.63 0.00 33.73 3.01
5118 7758 4.323104 GCTCAGTGTTGGAGGATCTTAAGT 60.323 45.833 1.63 0.00 33.73 2.24
5119 7759 4.081198 AGCTCAGTGTTGGAGGATCTTAAG 60.081 45.833 0.00 0.00 33.73 1.85
5120 7760 3.840666 AGCTCAGTGTTGGAGGATCTTAA 59.159 43.478 0.00 0.00 33.73 1.85
5121 7761 3.445008 AGCTCAGTGTTGGAGGATCTTA 58.555 45.455 0.00 0.00 33.73 2.10
5122 7762 2.264455 AGCTCAGTGTTGGAGGATCTT 58.736 47.619 0.00 0.00 33.73 2.40
5123 7763 1.949799 AGCTCAGTGTTGGAGGATCT 58.050 50.000 0.00 0.00 33.73 2.75
5124 7764 4.560513 GCTATAGCTCAGTGTTGGAGGATC 60.561 50.000 17.75 0.00 38.21 3.36
5125 7765 3.323403 GCTATAGCTCAGTGTTGGAGGAT 59.677 47.826 17.75 0.00 38.21 3.24
5126 7766 2.695666 GCTATAGCTCAGTGTTGGAGGA 59.304 50.000 17.75 0.00 38.21 3.71
5127 7767 3.104843 GCTATAGCTCAGTGTTGGAGG 57.895 52.381 17.75 0.00 38.21 4.30
5178 7818 1.599542 CTAATGGCTGCGGCTTAGTTC 59.400 52.381 18.85 0.00 38.73 3.01
5190 7830 1.985159 TGACCAACTCACCTAATGGCT 59.015 47.619 0.00 0.00 36.37 4.75
5199 7839 6.992063 AAGACATTCATATGACCAACTCAC 57.008 37.500 4.48 0.00 35.65 3.51
5210 7850 8.299570 GGAATTTGCCGAATAAGACATTCATAT 58.700 33.333 0.00 0.00 0.00 1.78
5251 7891 1.470098 GAACTGCACGCATTTGATCCT 59.530 47.619 0.00 0.00 0.00 3.24
5266 7906 2.564771 TCTCTTGTTGCTGGTGAACTG 58.435 47.619 0.00 0.00 0.00 3.16
5332 7972 2.773993 TCACGGAAGATTTGGTACCC 57.226 50.000 10.07 0.00 0.00 3.69
5485 8125 1.152271 TCCCACCTCTCCTTCTTCCTT 59.848 52.381 0.00 0.00 0.00 3.36
5545 8185 1.376812 CGACCTGGTTAACCTGCCC 60.377 63.158 24.78 15.96 36.82 5.36
5566 8206 0.179097 CTAAGAAGGTGGCGGCTCTC 60.179 60.000 11.43 1.07 0.00 3.20
5670 8310 1.286553 TCTCCACCTTCCCTCTCTCTC 59.713 57.143 0.00 0.00 0.00 3.20
5671 8311 1.006639 GTCTCCACCTTCCCTCTCTCT 59.993 57.143 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.