Multiple sequence alignment - TraesCS5D01G166300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G166300 chr5D 100.000 3729 0 0 1 3729 258831143 258834871 0.000000e+00 6887
1 TraesCS5D01G166300 chr5D 85.542 166 24 0 309 474 324346817 324346982 1.380000e-39 174
2 TraesCS5D01G166300 chr5D 81.592 201 34 3 637 835 442817098 442817297 2.980000e-36 163
3 TraesCS5D01G166300 chr5B 97.027 2893 64 7 836 3728 292966532 292969402 0.000000e+00 4846
4 TraesCS5D01G166300 chr5B 83.489 321 50 3 1 320 653393357 653393675 2.820000e-76 296
5 TraesCS5D01G166300 chr5B 83.438 320 50 3 1 318 558599259 558599577 1.010000e-75 294
6 TraesCS5D01G166300 chr5B 77.460 315 59 7 525 829 411927716 411928028 1.060000e-40 178
7 TraesCS5D01G166300 chr5A 93.303 2598 121 28 475 3034 343596183 343598765 0.000000e+00 3784
8 TraesCS5D01G166300 chr5A 87.500 472 31 7 3040 3489 343598813 343599278 1.540000e-143 520
9 TraesCS5D01G166300 chr5A 78.086 324 62 5 521 836 582609887 582609565 2.940000e-46 196
10 TraesCS5D01G166300 chr5A 87.742 155 18 1 692 845 35062510 35062356 2.960000e-41 180
11 TraesCS5D01G166300 chr5A 83.851 161 26 0 315 475 662346091 662345931 1.790000e-33 154
12 TraesCS5D01G166300 chr7B 85.538 325 44 3 1 323 52680755 52680432 1.660000e-88 337
13 TraesCS5D01G166300 chr7B 85.231 325 45 3 1 323 52659373 52659050 7.720000e-87 331
14 TraesCS5D01G166300 chr1A 84.967 306 44 2 2 305 571925776 571926081 3.620000e-80 309
15 TraesCS5D01G166300 chr1A 82.428 313 53 2 9 320 561833475 561833786 4.750000e-69 272
16 TraesCS5D01G166300 chr2D 84.142 309 48 1 15 323 33332402 33332095 7.830000e-77 298
17 TraesCS5D01G166300 chr2D 79.282 362 34 13 518 840 131631674 131631315 8.110000e-52 215
18 TraesCS5D01G166300 chr2D 86.982 169 21 1 309 476 185205544 185205712 4.920000e-44 189
19 TraesCS5D01G166300 chr1D 82.803 314 46 5 9 320 309915357 309915050 1.320000e-69 274
20 TraesCS5D01G166300 chr1D 88.415 164 17 2 312 474 309915154 309914992 2.940000e-46 196
21 TraesCS5D01G166300 chr1B 83.062 307 43 7 16 318 672414715 672414414 1.710000e-68 270
22 TraesCS5D01G166300 chr1B 80.428 327 46 16 522 836 673170884 673171204 2.240000e-57 233
23 TraesCS5D01G166300 chr2A 79.205 327 59 5 521 839 461410612 461410937 6.270000e-53 219
24 TraesCS5D01G166300 chr2A 85.143 175 17 3 309 474 56582845 56583019 1.780000e-38 171
25 TraesCS5D01G166300 chr3D 81.226 261 40 7 521 773 297599606 297599347 6.320000e-48 202
26 TraesCS5D01G166300 chr3D 76.852 324 64 9 522 835 79620935 79621257 4.950000e-39 172
27 TraesCS5D01G166300 chr6B 76.667 390 59 18 475 835 157122131 157122517 1.770000e-43 187
28 TraesCS5D01G166300 chr4D 86.145 166 23 0 312 477 29153338 29153173 2.960000e-41 180
29 TraesCS5D01G166300 chr4D 83.648 159 26 0 316 474 484626993 484627151 2.320000e-32 150
30 TraesCS5D01G166300 chrUn 89.362 141 15 0 316 456 234400361 234400221 1.060000e-40 178
31 TraesCS5D01G166300 chrUn 89.362 141 15 0 316 456 283156381 283156241 1.060000e-40 178
32 TraesCS5D01G166300 chrUn 89.362 141 15 0 316 456 328247216 328247076 1.060000e-40 178
33 TraesCS5D01G166300 chr3A 86.503 163 21 1 312 474 712947736 712947575 1.060000e-40 178
34 TraesCS5D01G166300 chr6D 85.393 178 17 1 312 480 322867200 322867023 3.830000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G166300 chr5D 258831143 258834871 3728 False 6887 6887 100.0000 1 3729 1 chr5D.!!$F1 3728
1 TraesCS5D01G166300 chr5B 292966532 292969402 2870 False 4846 4846 97.0270 836 3728 1 chr5B.!!$F1 2892
2 TraesCS5D01G166300 chr5A 343596183 343599278 3095 False 2152 3784 90.4015 475 3489 2 chr5A.!!$F1 3014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.036105 TTGAGTGGATGCGCTCATGT 60.036 50.000 27.97 0.00 40.83 3.21 F
320 321 0.110373 GCGAACCACAAGCTTAACGG 60.110 55.000 0.00 2.22 0.00 4.44 F
323 324 0.179001 AACCACAAGCTTAACGGGCT 60.179 50.000 0.00 0.00 42.31 5.19 F
516 517 0.597568 AGCGCATGCAACAGCTAAAA 59.402 45.000 19.57 0.00 46.23 1.52 F
536 537 0.899019 TGTTGCCGCCTCATGTAGTA 59.101 50.000 0.00 0.00 0.00 1.82 F
951 984 1.492599 CCTCCATTCCTTCCTCCCTTC 59.507 57.143 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1737 1.897133 TGCCCGTTGTAGAGCTCTTTA 59.103 47.619 23.84 8.61 0.00 1.85 R
2184 2217 0.246635 ACTTAGTCGCCACGCAAGAT 59.753 50.000 6.01 0.00 43.62 2.40 R
2307 2340 2.594592 GTCACCCTGCGGCACTTT 60.595 61.111 0.00 0.00 0.00 2.66 R
2695 2728 4.536065 TCAATCGCAAAGAACAACATCAC 58.464 39.130 0.00 0.00 0.00 3.06 R
2711 2747 8.970691 ATTAAGGAAGACAAAAACATCAATCG 57.029 30.769 0.00 0.00 0.00 3.34 R
2796 2832 4.810790 TCTCTGCTACTACAAAGAGCAAC 58.189 43.478 0.00 0.00 45.15 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.202440 GCTCGTGAGCGCTCGTTA 60.202 61.111 30.75 17.53 45.29 3.18
26 27 1.800315 GCTCGTGAGCGCTCGTTAA 60.800 57.895 30.75 12.13 45.29 2.01
27 28 1.981668 CTCGTGAGCGCTCGTTAAC 59.018 57.895 30.75 21.89 38.14 2.01
28 29 0.728129 CTCGTGAGCGCTCGTTAACA 60.728 55.000 30.75 11.62 38.14 2.41
29 30 0.728129 TCGTGAGCGCTCGTTAACAG 60.728 55.000 30.75 18.27 38.14 3.16
30 31 0.728129 CGTGAGCGCTCGTTAACAGA 60.728 55.000 30.75 9.36 0.00 3.41
31 32 1.630148 GTGAGCGCTCGTTAACAGAT 58.370 50.000 30.75 0.00 0.00 2.90
32 33 1.993370 GTGAGCGCTCGTTAACAGATT 59.007 47.619 30.75 0.00 0.00 2.40
33 34 2.412089 GTGAGCGCTCGTTAACAGATTT 59.588 45.455 30.75 0.00 0.00 2.17
34 35 3.064207 TGAGCGCTCGTTAACAGATTTT 58.936 40.909 30.75 0.00 0.00 1.82
35 36 4.090930 GTGAGCGCTCGTTAACAGATTTTA 59.909 41.667 30.75 6.57 0.00 1.52
36 37 4.687018 TGAGCGCTCGTTAACAGATTTTAA 59.313 37.500 30.75 5.88 0.00 1.52
37 38 5.350365 TGAGCGCTCGTTAACAGATTTTAAT 59.650 36.000 30.75 0.00 0.00 1.40
38 39 5.560148 AGCGCTCGTTAACAGATTTTAATG 58.440 37.500 2.64 0.00 31.66 1.90
39 40 5.121768 AGCGCTCGTTAACAGATTTTAATGT 59.878 36.000 2.64 0.00 32.12 2.71
40 41 5.225129 GCGCTCGTTAACAGATTTTAATGTG 59.775 40.000 0.00 0.00 35.92 3.21
41 42 6.304126 CGCTCGTTAACAGATTTTAATGTGT 58.696 36.000 6.39 0.00 43.79 3.72
49 50 6.500684 ACAGATTTTAATGTGTTGCGATCT 57.499 33.333 0.00 0.00 39.57 2.75
50 51 7.609760 ACAGATTTTAATGTGTTGCGATCTA 57.390 32.000 0.00 0.00 39.57 1.98
51 52 7.464358 ACAGATTTTAATGTGTTGCGATCTAC 58.536 34.615 0.00 0.00 39.57 2.59
52 53 7.119116 ACAGATTTTAATGTGTTGCGATCTACA 59.881 33.333 0.00 0.00 39.57 2.74
53 54 8.124823 CAGATTTTAATGTGTTGCGATCTACAT 58.875 33.333 0.00 0.00 35.43 2.29
54 55 8.124823 AGATTTTAATGTGTTGCGATCTACATG 58.875 33.333 0.00 0.00 34.28 3.21
55 56 6.976636 TTTAATGTGTTGCGATCTACATGA 57.023 33.333 0.00 0.00 34.28 3.07
56 57 7.552458 TTTAATGTGTTGCGATCTACATGAT 57.448 32.000 0.00 0.00 38.27 2.45
57 58 8.655651 TTTAATGTGTTGCGATCTACATGATA 57.344 30.769 0.00 0.00 35.14 2.15
58 59 8.831715 TTAATGTGTTGCGATCTACATGATAT 57.168 30.769 0.00 0.00 35.14 1.63
59 60 6.716898 ATGTGTTGCGATCTACATGATATG 57.283 37.500 0.00 0.00 35.14 1.78
60 61 4.448732 TGTGTTGCGATCTACATGATATGC 59.551 41.667 0.00 0.00 37.24 3.14
61 62 3.674753 TGTTGCGATCTACATGATATGCG 59.325 43.478 0.00 0.00 38.64 4.73
62 63 3.575965 TGCGATCTACATGATATGCGT 57.424 42.857 0.00 0.00 38.64 5.24
63 64 3.501950 TGCGATCTACATGATATGCGTC 58.498 45.455 0.00 0.00 38.64 5.19
64 65 3.191371 TGCGATCTACATGATATGCGTCT 59.809 43.478 0.00 0.00 38.64 4.18
65 66 4.394920 TGCGATCTACATGATATGCGTCTA 59.605 41.667 0.00 0.00 38.64 2.59
66 67 4.966970 GCGATCTACATGATATGCGTCTAG 59.033 45.833 0.00 0.00 35.14 2.43
67 68 5.220681 GCGATCTACATGATATGCGTCTAGA 60.221 44.000 0.00 0.00 35.14 2.43
68 69 6.512578 GCGATCTACATGATATGCGTCTAGAT 60.513 42.308 0.00 0.00 35.14 1.98
69 70 7.413644 CGATCTACATGATATGCGTCTAGATT 58.586 38.462 0.00 0.00 35.14 2.40
70 71 8.552034 CGATCTACATGATATGCGTCTAGATTA 58.448 37.037 0.00 0.00 35.14 1.75
71 72 9.877137 GATCTACATGATATGCGTCTAGATTAG 57.123 37.037 0.00 0.00 35.14 1.73
72 73 8.214721 TCTACATGATATGCGTCTAGATTAGG 57.785 38.462 0.00 0.00 0.00 2.69
73 74 6.842437 ACATGATATGCGTCTAGATTAGGT 57.158 37.500 0.00 0.00 0.00 3.08
74 75 7.233389 ACATGATATGCGTCTAGATTAGGTT 57.767 36.000 0.00 0.00 0.00 3.50
75 76 7.671302 ACATGATATGCGTCTAGATTAGGTTT 58.329 34.615 0.00 0.00 0.00 3.27
76 77 8.150945 ACATGATATGCGTCTAGATTAGGTTTT 58.849 33.333 0.00 0.00 0.00 2.43
77 78 8.993121 CATGATATGCGTCTAGATTAGGTTTTT 58.007 33.333 0.00 0.00 0.00 1.94
83 84 8.475331 TGCGTCTAGATTAGGTTTTTAAGAAG 57.525 34.615 0.00 0.00 0.00 2.85
84 85 7.548075 TGCGTCTAGATTAGGTTTTTAAGAAGG 59.452 37.037 0.00 0.00 0.00 3.46
85 86 7.763071 GCGTCTAGATTAGGTTTTTAAGAAGGA 59.237 37.037 0.00 0.00 0.00 3.36
86 87 9.649167 CGTCTAGATTAGGTTTTTAAGAAGGAA 57.351 33.333 0.00 0.00 0.00 3.36
90 91 8.549338 AGATTAGGTTTTTAAGAAGGAAGACG 57.451 34.615 0.00 0.00 0.00 4.18
91 92 7.606839 AGATTAGGTTTTTAAGAAGGAAGACGG 59.393 37.037 0.00 0.00 0.00 4.79
92 93 5.045012 AGGTTTTTAAGAAGGAAGACGGT 57.955 39.130 0.00 0.00 0.00 4.83
93 94 4.820173 AGGTTTTTAAGAAGGAAGACGGTG 59.180 41.667 0.00 0.00 0.00 4.94
94 95 4.818005 GGTTTTTAAGAAGGAAGACGGTGA 59.182 41.667 0.00 0.00 0.00 4.02
95 96 5.277683 GGTTTTTAAGAAGGAAGACGGTGAC 60.278 44.000 0.00 0.00 0.00 3.67
96 97 4.950205 TTTAAGAAGGAAGACGGTGACT 57.050 40.909 0.00 0.00 0.00 3.41
97 98 6.409524 TTTTAAGAAGGAAGACGGTGACTA 57.590 37.500 0.00 0.00 0.00 2.59
98 99 3.938289 AAGAAGGAAGACGGTGACTAC 57.062 47.619 0.00 0.00 0.00 2.73
99 100 2.872732 AGAAGGAAGACGGTGACTACA 58.127 47.619 0.00 0.00 0.00 2.74
100 101 3.228453 AGAAGGAAGACGGTGACTACAA 58.772 45.455 0.00 0.00 0.00 2.41
101 102 3.640029 AGAAGGAAGACGGTGACTACAAA 59.360 43.478 0.00 0.00 0.00 2.83
102 103 4.100498 AGAAGGAAGACGGTGACTACAAAA 59.900 41.667 0.00 0.00 0.00 2.44
103 104 3.991367 AGGAAGACGGTGACTACAAAAG 58.009 45.455 0.00 0.00 0.00 2.27
104 105 3.064931 GGAAGACGGTGACTACAAAAGG 58.935 50.000 0.00 0.00 0.00 3.11
105 106 3.243975 GGAAGACGGTGACTACAAAAGGA 60.244 47.826 0.00 0.00 0.00 3.36
106 107 4.374399 GAAGACGGTGACTACAAAAGGAA 58.626 43.478 0.00 0.00 0.00 3.36
107 108 4.411256 AGACGGTGACTACAAAAGGAAA 57.589 40.909 0.00 0.00 0.00 3.13
108 109 4.969484 AGACGGTGACTACAAAAGGAAAT 58.031 39.130 0.00 0.00 0.00 2.17
109 110 4.755123 AGACGGTGACTACAAAAGGAAATG 59.245 41.667 0.00 0.00 0.00 2.32
110 111 3.252458 ACGGTGACTACAAAAGGAAATGC 59.748 43.478 0.00 0.00 0.00 3.56
111 112 3.252215 CGGTGACTACAAAAGGAAATGCA 59.748 43.478 0.00 0.00 0.00 3.96
112 113 4.546570 GGTGACTACAAAAGGAAATGCAC 58.453 43.478 0.00 0.00 0.00 4.57
113 114 4.278419 GGTGACTACAAAAGGAAATGCACT 59.722 41.667 0.00 0.00 0.00 4.40
114 115 5.472137 GGTGACTACAAAAGGAAATGCACTA 59.528 40.000 0.00 0.00 0.00 2.74
115 116 6.348540 GGTGACTACAAAAGGAAATGCACTAG 60.349 42.308 0.00 0.00 0.00 2.57
116 117 6.204882 GTGACTACAAAAGGAAATGCACTAGT 59.795 38.462 0.00 0.00 0.00 2.57
117 118 6.770785 TGACTACAAAAGGAAATGCACTAGTT 59.229 34.615 0.00 0.00 0.00 2.24
118 119 7.284489 TGACTACAAAAGGAAATGCACTAGTTT 59.716 33.333 0.00 0.00 0.00 2.66
119 120 7.425606 ACTACAAAAGGAAATGCACTAGTTTG 58.574 34.615 0.00 0.00 0.00 2.93
120 121 6.220726 ACAAAAGGAAATGCACTAGTTTGT 57.779 33.333 0.00 0.00 34.14 2.83
121 122 6.639563 ACAAAAGGAAATGCACTAGTTTGTT 58.360 32.000 0.00 0.00 35.10 2.83
122 123 6.534793 ACAAAAGGAAATGCACTAGTTTGTTG 59.465 34.615 0.00 0.00 35.10 3.33
123 124 4.243007 AGGAAATGCACTAGTTTGTTGC 57.757 40.909 0.00 0.00 0.00 4.17
124 125 3.005791 AGGAAATGCACTAGTTTGTTGCC 59.994 43.478 0.00 0.00 0.00 4.52
125 126 3.005791 GGAAATGCACTAGTTTGTTGCCT 59.994 43.478 0.00 0.00 0.00 4.75
126 127 3.923017 AATGCACTAGTTTGTTGCCTC 57.077 42.857 0.00 0.00 0.00 4.70
127 128 1.604604 TGCACTAGTTTGTTGCCTCC 58.395 50.000 0.00 0.00 0.00 4.30
128 129 1.142870 TGCACTAGTTTGTTGCCTCCT 59.857 47.619 0.00 0.00 0.00 3.69
129 130 2.370519 TGCACTAGTTTGTTGCCTCCTA 59.629 45.455 0.00 0.00 0.00 2.94
130 131 3.009033 TGCACTAGTTTGTTGCCTCCTAT 59.991 43.478 0.00 0.00 0.00 2.57
131 132 3.375299 GCACTAGTTTGTTGCCTCCTATG 59.625 47.826 0.00 0.00 0.00 2.23
132 133 4.579869 CACTAGTTTGTTGCCTCCTATGT 58.420 43.478 0.00 0.00 0.00 2.29
133 134 5.730550 CACTAGTTTGTTGCCTCCTATGTA 58.269 41.667 0.00 0.00 0.00 2.29
134 135 5.812642 CACTAGTTTGTTGCCTCCTATGTAG 59.187 44.000 0.00 0.00 0.00 2.74
135 136 5.720041 ACTAGTTTGTTGCCTCCTATGTAGA 59.280 40.000 0.00 0.00 0.00 2.59
136 137 5.700402 AGTTTGTTGCCTCCTATGTAGAT 57.300 39.130 0.00 0.00 0.00 1.98
137 138 6.067217 AGTTTGTTGCCTCCTATGTAGATT 57.933 37.500 0.00 0.00 0.00 2.40
138 139 7.195374 AGTTTGTTGCCTCCTATGTAGATTA 57.805 36.000 0.00 0.00 0.00 1.75
139 140 7.275920 AGTTTGTTGCCTCCTATGTAGATTAG 58.724 38.462 0.00 0.00 0.00 1.73
140 141 7.125811 AGTTTGTTGCCTCCTATGTAGATTAGA 59.874 37.037 0.00 0.00 0.00 2.10
141 142 7.618019 TTGTTGCCTCCTATGTAGATTAGAT 57.382 36.000 0.00 0.00 0.00 1.98
142 143 7.618019 TGTTGCCTCCTATGTAGATTAGATT 57.382 36.000 0.00 0.00 0.00 2.40
143 144 7.445121 TGTTGCCTCCTATGTAGATTAGATTG 58.555 38.462 0.00 0.00 0.00 2.67
144 145 7.290014 TGTTGCCTCCTATGTAGATTAGATTGA 59.710 37.037 0.00 0.00 0.00 2.57
145 146 7.473735 TGCCTCCTATGTAGATTAGATTGAG 57.526 40.000 0.00 0.00 0.00 3.02
146 147 7.013220 TGCCTCCTATGTAGATTAGATTGAGT 58.987 38.462 0.00 0.00 0.00 3.41
147 148 7.039434 TGCCTCCTATGTAGATTAGATTGAGTG 60.039 40.741 0.00 0.00 0.00 3.51
148 149 7.578571 GCCTCCTATGTAGATTAGATTGAGTGG 60.579 44.444 0.00 0.00 0.00 4.00
149 150 7.671819 CCTCCTATGTAGATTAGATTGAGTGGA 59.328 40.741 0.00 0.00 0.00 4.02
150 151 9.253832 CTCCTATGTAGATTAGATTGAGTGGAT 57.746 37.037 0.00 0.00 0.00 3.41
151 152 9.029368 TCCTATGTAGATTAGATTGAGTGGATG 57.971 37.037 0.00 0.00 0.00 3.51
152 153 7.763528 CCTATGTAGATTAGATTGAGTGGATGC 59.236 40.741 0.00 0.00 0.00 3.91
153 154 5.532557 TGTAGATTAGATTGAGTGGATGCG 58.467 41.667 0.00 0.00 0.00 4.73
154 155 3.397482 AGATTAGATTGAGTGGATGCGC 58.603 45.455 0.00 0.00 0.00 6.09
155 156 2.988010 TTAGATTGAGTGGATGCGCT 57.012 45.000 9.73 0.00 0.00 5.92
156 157 2.515926 TAGATTGAGTGGATGCGCTC 57.484 50.000 19.80 19.80 0.00 5.03
157 158 0.538584 AGATTGAGTGGATGCGCTCA 59.461 50.000 24.56 24.56 39.66 4.26
158 159 1.140452 AGATTGAGTGGATGCGCTCAT 59.860 47.619 27.97 18.53 40.83 2.90
159 160 1.263484 GATTGAGTGGATGCGCTCATG 59.737 52.381 27.97 0.00 40.83 3.07
160 161 0.036105 TTGAGTGGATGCGCTCATGT 60.036 50.000 27.97 0.00 40.83 3.21
161 162 0.741927 TGAGTGGATGCGCTCATGTG 60.742 55.000 24.56 0.00 36.89 3.21
170 171 2.330231 GCGCTCATGTGCTACAAAAA 57.670 45.000 16.99 0.00 45.43 1.94
171 172 2.867429 GCGCTCATGTGCTACAAAAAT 58.133 42.857 16.99 0.00 45.43 1.82
172 173 3.244976 GCGCTCATGTGCTACAAAAATT 58.755 40.909 16.99 0.00 45.43 1.82
173 174 3.674753 GCGCTCATGTGCTACAAAAATTT 59.325 39.130 16.99 0.00 45.43 1.82
174 175 4.201523 GCGCTCATGTGCTACAAAAATTTC 60.202 41.667 16.99 0.00 45.43 2.17
175 176 4.029418 CGCTCATGTGCTACAAAAATTTCG 59.971 41.667 16.99 0.00 0.00 3.46
176 177 4.917415 GCTCATGTGCTACAAAAATTTCGT 59.083 37.500 12.42 0.00 0.00 3.85
177 178 5.059710 GCTCATGTGCTACAAAAATTTCGTC 59.940 40.000 12.42 0.00 0.00 4.20
178 179 6.066054 TCATGTGCTACAAAAATTTCGTCA 57.934 33.333 0.00 0.00 0.00 4.35
179 180 6.142139 TCATGTGCTACAAAAATTTCGTCAG 58.858 36.000 0.00 0.00 0.00 3.51
180 181 4.854399 TGTGCTACAAAAATTTCGTCAGG 58.146 39.130 0.00 0.00 0.00 3.86
181 182 4.336993 TGTGCTACAAAAATTTCGTCAGGT 59.663 37.500 0.00 0.00 0.00 4.00
182 183 5.527951 TGTGCTACAAAAATTTCGTCAGGTA 59.472 36.000 0.00 0.00 0.00 3.08
183 184 6.038382 TGTGCTACAAAAATTTCGTCAGGTAA 59.962 34.615 0.00 0.00 0.00 2.85
184 185 6.577427 GTGCTACAAAAATTTCGTCAGGTAAG 59.423 38.462 0.00 0.00 0.00 2.34
185 186 6.483974 TGCTACAAAAATTTCGTCAGGTAAGA 59.516 34.615 0.00 0.00 0.00 2.10
186 187 7.174253 TGCTACAAAAATTTCGTCAGGTAAGAT 59.826 33.333 0.00 0.00 0.00 2.40
187 188 7.481798 GCTACAAAAATTTCGTCAGGTAAGATG 59.518 37.037 0.00 0.00 0.00 2.90
188 189 7.504924 ACAAAAATTTCGTCAGGTAAGATGA 57.495 32.000 0.00 0.00 0.00 2.92
189 190 7.936584 ACAAAAATTTCGTCAGGTAAGATGAA 58.063 30.769 0.00 0.00 40.69 2.57
221 222 8.498054 TGTACTATTGTTACTAACGAGCTACT 57.502 34.615 0.00 0.00 0.00 2.57
222 223 8.607459 TGTACTATTGTTACTAACGAGCTACTC 58.393 37.037 0.00 0.00 0.00 2.59
237 238 4.425520 AGCTACTCGTGAAACTCATTAGC 58.574 43.478 0.00 0.00 31.75 3.09
238 239 4.158764 AGCTACTCGTGAAACTCATTAGCT 59.841 41.667 0.00 0.00 33.13 3.32
239 240 4.501198 GCTACTCGTGAAACTCATTAGCTC 59.499 45.833 0.00 0.00 31.75 4.09
240 241 3.502920 ACTCGTGAAACTCATTAGCTCG 58.497 45.455 0.00 0.00 31.75 5.03
241 242 3.057456 ACTCGTGAAACTCATTAGCTCGT 60.057 43.478 0.00 0.00 31.75 4.18
242 243 3.909430 TCGTGAAACTCATTAGCTCGTT 58.091 40.909 0.00 0.00 31.75 3.85
243 244 3.918591 TCGTGAAACTCATTAGCTCGTTC 59.081 43.478 0.00 0.00 31.75 3.95
244 245 3.241364 CGTGAAACTCATTAGCTCGTTCG 60.241 47.826 0.00 0.00 31.75 3.95
245 246 3.673809 GTGAAACTCATTAGCTCGTTCGT 59.326 43.478 0.00 0.00 0.00 3.85
246 247 4.150098 GTGAAACTCATTAGCTCGTTCGTT 59.850 41.667 0.00 0.00 0.00 3.85
247 248 5.344128 GTGAAACTCATTAGCTCGTTCGTTA 59.656 40.000 0.00 0.00 0.00 3.18
248 249 5.921976 TGAAACTCATTAGCTCGTTCGTTAA 59.078 36.000 0.00 0.00 0.00 2.01
249 250 6.089016 TGAAACTCATTAGCTCGTTCGTTAAG 59.911 38.462 0.00 0.00 0.00 1.85
250 251 5.056894 ACTCATTAGCTCGTTCGTTAAGT 57.943 39.130 0.00 0.00 0.00 2.24
251 252 5.467705 ACTCATTAGCTCGTTCGTTAAGTT 58.532 37.500 0.00 0.00 0.00 2.66
252 253 5.572126 ACTCATTAGCTCGTTCGTTAAGTTC 59.428 40.000 0.00 0.00 0.00 3.01
253 254 4.556135 TCATTAGCTCGTTCGTTAAGTTCG 59.444 41.667 0.00 0.00 0.00 3.95
254 255 2.412421 AGCTCGTTCGTTAAGTTCGT 57.588 45.000 0.00 0.00 0.00 3.85
255 256 2.735823 AGCTCGTTCGTTAAGTTCGTT 58.264 42.857 0.00 0.00 0.00 3.85
256 257 3.888934 AGCTCGTTCGTTAAGTTCGTTA 58.111 40.909 0.00 0.00 0.00 3.18
257 258 4.290155 AGCTCGTTCGTTAAGTTCGTTAA 58.710 39.130 0.00 0.00 0.00 2.01
258 259 4.380974 AGCTCGTTCGTTAAGTTCGTTAAG 59.619 41.667 0.00 0.00 30.93 1.85
259 260 4.612482 CTCGTTCGTTAAGTTCGTTAAGC 58.388 43.478 0.00 0.00 30.93 3.09
260 261 4.290155 TCGTTCGTTAAGTTCGTTAAGCT 58.710 39.130 0.00 0.00 30.93 3.74
261 262 4.739716 TCGTTCGTTAAGTTCGTTAAGCTT 59.260 37.500 3.48 3.48 30.93 3.74
262 263 5.912396 TCGTTCGTTAAGTTCGTTAAGCTTA 59.088 36.000 0.86 0.86 30.93 3.09
263 264 6.416455 TCGTTCGTTAAGTTCGTTAAGCTTAA 59.584 34.615 14.96 14.96 33.80 1.85
264 265 6.509642 CGTTCGTTAAGTTCGTTAAGCTTAAC 59.490 38.462 31.05 31.05 45.14 2.01
283 284 7.751047 CTTAACAAGCTGAAATCCATGATTG 57.249 36.000 0.00 0.00 32.14 2.67
284 285 4.730949 ACAAGCTGAAATCCATGATTGG 57.269 40.909 0.00 0.00 45.15 3.16
285 286 3.118884 ACAAGCTGAAATCCATGATTGGC 60.119 43.478 0.00 0.00 43.29 4.52
286 287 3.028094 AGCTGAAATCCATGATTGGCT 57.972 42.857 0.00 1.84 43.29 4.75
287 288 2.957006 AGCTGAAATCCATGATTGGCTC 59.043 45.455 0.00 0.00 43.29 4.70
288 289 2.957006 GCTGAAATCCATGATTGGCTCT 59.043 45.455 0.00 0.00 43.29 4.09
289 290 3.243434 GCTGAAATCCATGATTGGCTCTG 60.243 47.826 0.00 0.00 43.29 3.35
290 291 3.952323 CTGAAATCCATGATTGGCTCTGT 59.048 43.478 0.00 0.00 43.29 3.41
291 292 4.346730 TGAAATCCATGATTGGCTCTGTT 58.653 39.130 0.00 0.00 43.29 3.16
292 293 4.400251 TGAAATCCATGATTGGCTCTGTTC 59.600 41.667 0.00 0.00 43.29 3.18
293 294 3.657398 ATCCATGATTGGCTCTGTTCA 57.343 42.857 0.00 0.00 43.29 3.18
294 295 3.657398 TCCATGATTGGCTCTGTTCAT 57.343 42.857 0.00 0.00 43.29 2.57
295 296 3.972133 TCCATGATTGGCTCTGTTCATT 58.028 40.909 0.00 0.00 43.29 2.57
296 297 5.114764 TCCATGATTGGCTCTGTTCATTA 57.885 39.130 0.00 0.00 43.29 1.90
297 298 5.508567 TCCATGATTGGCTCTGTTCATTAA 58.491 37.500 0.00 0.00 43.29 1.40
298 299 5.591472 TCCATGATTGGCTCTGTTCATTAAG 59.409 40.000 0.00 0.00 43.29 1.85
299 300 5.591472 CCATGATTGGCTCTGTTCATTAAGA 59.409 40.000 0.00 0.00 35.85 2.10
300 301 6.095860 CCATGATTGGCTCTGTTCATTAAGAA 59.904 38.462 0.00 0.00 35.85 2.52
301 302 6.748333 TGATTGGCTCTGTTCATTAAGAAG 57.252 37.500 0.00 0.00 36.78 2.85
302 303 5.124457 TGATTGGCTCTGTTCATTAAGAAGC 59.876 40.000 0.00 0.00 36.78 3.86
303 304 3.002791 TGGCTCTGTTCATTAAGAAGCG 58.997 45.455 0.00 0.00 36.78 4.68
304 305 3.262420 GGCTCTGTTCATTAAGAAGCGA 58.738 45.455 0.00 0.00 36.78 4.93
305 306 3.684788 GGCTCTGTTCATTAAGAAGCGAA 59.315 43.478 0.00 0.00 36.78 4.70
306 307 4.436183 GGCTCTGTTCATTAAGAAGCGAAC 60.436 45.833 0.00 0.00 36.78 3.95
307 308 4.436183 GCTCTGTTCATTAAGAAGCGAACC 60.436 45.833 0.00 0.00 37.53 3.62
308 309 4.637276 TCTGTTCATTAAGAAGCGAACCA 58.363 39.130 0.00 0.00 37.53 3.67
309 310 4.451096 TCTGTTCATTAAGAAGCGAACCAC 59.549 41.667 0.00 0.00 37.53 4.16
310 311 4.130857 TGTTCATTAAGAAGCGAACCACA 58.869 39.130 0.00 0.00 37.53 4.17
311 312 4.576873 TGTTCATTAAGAAGCGAACCACAA 59.423 37.500 0.00 0.00 37.53 3.33
312 313 5.147162 GTTCATTAAGAAGCGAACCACAAG 58.853 41.667 0.00 0.00 36.78 3.16
313 314 3.188460 TCATTAAGAAGCGAACCACAAGC 59.812 43.478 0.00 0.00 0.00 4.01
314 315 2.543777 TAAGAAGCGAACCACAAGCT 57.456 45.000 0.00 0.00 43.90 3.74
319 320 0.865769 AGCGAACCACAAGCTTAACG 59.134 50.000 0.00 0.44 38.13 3.18
320 321 0.110373 GCGAACCACAAGCTTAACGG 60.110 55.000 0.00 2.22 0.00 4.44
321 322 0.515564 CGAACCACAAGCTTAACGGG 59.484 55.000 0.00 0.71 0.00 5.28
322 323 0.240145 GAACCACAAGCTTAACGGGC 59.760 55.000 0.00 0.00 0.00 6.13
323 324 0.179001 AACCACAAGCTTAACGGGCT 60.179 50.000 0.00 0.00 42.31 5.19
324 325 0.688487 ACCACAAGCTTAACGGGCTA 59.312 50.000 0.00 0.00 39.30 3.93
325 326 1.084289 CCACAAGCTTAACGGGCTAC 58.916 55.000 0.00 0.00 39.30 3.58
326 327 1.338769 CCACAAGCTTAACGGGCTACT 60.339 52.381 0.00 0.00 39.30 2.57
327 328 2.000447 CACAAGCTTAACGGGCTACTC 59.000 52.381 0.00 0.00 39.30 2.59
328 329 1.621814 ACAAGCTTAACGGGCTACTCA 59.378 47.619 0.00 0.00 39.30 3.41
329 330 2.236395 ACAAGCTTAACGGGCTACTCAT 59.764 45.455 0.00 0.00 39.30 2.90
330 331 2.604046 AGCTTAACGGGCTACTCATG 57.396 50.000 0.00 0.00 38.36 3.07
331 332 2.108168 AGCTTAACGGGCTACTCATGA 58.892 47.619 0.00 0.00 38.36 3.07
332 333 2.500098 AGCTTAACGGGCTACTCATGAA 59.500 45.455 0.00 0.00 38.36 2.57
333 334 3.055385 AGCTTAACGGGCTACTCATGAAA 60.055 43.478 0.00 0.00 38.36 2.69
334 335 3.063588 GCTTAACGGGCTACTCATGAAAC 59.936 47.826 0.00 0.00 0.00 2.78
335 336 4.504858 CTTAACGGGCTACTCATGAAACT 58.495 43.478 0.00 0.00 0.00 2.66
336 337 2.674796 ACGGGCTACTCATGAAACTC 57.325 50.000 0.00 0.00 0.00 3.01
337 338 1.135083 ACGGGCTACTCATGAAACTCG 60.135 52.381 0.00 0.70 0.00 4.18
338 339 1.135083 CGGGCTACTCATGAAACTCGT 60.135 52.381 0.00 0.00 0.00 4.18
339 340 2.674177 CGGGCTACTCATGAAACTCGTT 60.674 50.000 0.00 0.00 0.00 3.85
340 341 3.428452 CGGGCTACTCATGAAACTCGTTA 60.428 47.826 0.00 0.00 0.00 3.18
341 342 4.113354 GGGCTACTCATGAAACTCGTTAG 58.887 47.826 0.00 0.00 0.00 2.34
342 343 3.552294 GGCTACTCATGAAACTCGTTAGC 59.448 47.826 0.00 1.10 0.00 3.09
343 344 4.425520 GCTACTCATGAAACTCGTTAGCT 58.574 43.478 0.00 0.00 0.00 3.32
344 345 4.501198 GCTACTCATGAAACTCGTTAGCTC 59.499 45.833 0.00 0.00 0.00 4.09
345 346 3.502920 ACTCATGAAACTCGTTAGCTCG 58.497 45.455 0.00 0.00 0.00 5.03
346 347 3.057456 ACTCATGAAACTCGTTAGCTCGT 60.057 43.478 0.00 0.00 0.00 4.18
347 348 3.909430 TCATGAAACTCGTTAGCTCGTT 58.091 40.909 0.00 0.00 0.00 3.85
348 349 3.918591 TCATGAAACTCGTTAGCTCGTTC 59.081 43.478 0.00 0.00 0.00 3.95
349 350 2.313234 TGAAACTCGTTAGCTCGTTCG 58.687 47.619 0.00 0.00 0.00 3.95
350 351 2.287188 TGAAACTCGTTAGCTCGTTCGT 60.287 45.455 0.00 0.00 0.00 3.85
351 352 2.412421 AACTCGTTAGCTCGTTCGTT 57.588 45.000 0.00 0.00 0.00 3.85
352 353 3.542712 AACTCGTTAGCTCGTTCGTTA 57.457 42.857 0.00 0.00 0.00 3.18
353 354 3.542712 ACTCGTTAGCTCGTTCGTTAA 57.457 42.857 0.00 0.00 0.00 2.01
354 355 3.486584 ACTCGTTAGCTCGTTCGTTAAG 58.513 45.455 0.00 0.00 0.00 1.85
355 356 2.245096 TCGTTAGCTCGTTCGTTAAGC 58.755 47.619 0.00 0.00 36.27 3.09
357 358 2.660236 CGTTAGCTCGTTCGTTAAGCTT 59.340 45.455 3.48 3.48 43.67 3.74
358 359 3.848019 CGTTAGCTCGTTCGTTAAGCTTA 59.152 43.478 0.86 0.86 43.67 3.09
359 360 4.321745 CGTTAGCTCGTTCGTTAAGCTTAA 59.678 41.667 14.96 14.96 43.67 1.85
360 361 5.536513 GTTAGCTCGTTCGTTAAGCTTAAC 58.463 41.667 31.05 31.05 43.67 2.01
376 377 3.797039 CTTAACGAGCTGGAATCCATGA 58.203 45.455 0.87 0.00 30.82 3.07
377 378 4.384056 CTTAACGAGCTGGAATCCATGAT 58.616 43.478 0.87 0.00 30.82 2.45
378 379 3.287867 AACGAGCTGGAATCCATGATT 57.712 42.857 0.87 0.00 34.71 2.57
379 380 2.569059 ACGAGCTGGAATCCATGATTG 58.431 47.619 0.87 2.72 31.89 2.67
380 381 1.878088 CGAGCTGGAATCCATGATTGG 59.122 52.381 0.87 0.00 45.15 3.16
381 382 1.612463 GAGCTGGAATCCATGATTGGC 59.388 52.381 0.87 1.08 43.29 4.52
382 383 1.217183 AGCTGGAATCCATGATTGGCT 59.783 47.619 0.87 3.81 43.29 4.75
383 384 1.612463 GCTGGAATCCATGATTGGCTC 59.388 52.381 0.87 0.00 43.29 4.70
384 385 2.752154 GCTGGAATCCATGATTGGCTCT 60.752 50.000 0.87 0.00 43.29 4.09
385 386 2.885266 CTGGAATCCATGATTGGCTCTG 59.115 50.000 0.87 0.00 43.29 3.35
386 387 2.242965 TGGAATCCATGATTGGCTCTGT 59.757 45.455 0.00 0.00 43.29 3.41
387 388 3.294214 GGAATCCATGATTGGCTCTGTT 58.706 45.455 0.00 0.00 43.29 3.16
388 389 3.317430 GGAATCCATGATTGGCTCTGTTC 59.683 47.826 0.00 0.00 43.29 3.18
389 390 3.657398 ATCCATGATTGGCTCTGTTCA 57.343 42.857 0.00 0.00 43.29 3.18
390 391 3.657398 TCCATGATTGGCTCTGTTCAT 57.343 42.857 0.00 0.00 43.29 2.57
391 392 3.972133 TCCATGATTGGCTCTGTTCATT 58.028 40.909 0.00 0.00 43.29 2.57
392 393 5.114764 TCCATGATTGGCTCTGTTCATTA 57.885 39.130 0.00 0.00 43.29 1.90
393 394 5.508567 TCCATGATTGGCTCTGTTCATTAA 58.491 37.500 0.00 0.00 43.29 1.40
394 395 5.591472 TCCATGATTGGCTCTGTTCATTAAG 59.409 40.000 0.00 0.00 43.29 1.85
395 396 5.591472 CCATGATTGGCTCTGTTCATTAAGA 59.409 40.000 0.00 0.00 35.85 2.10
396 397 6.095860 CCATGATTGGCTCTGTTCATTAAGAA 59.904 38.462 0.00 0.00 35.85 2.52
397 398 6.748333 TGATTGGCTCTGTTCATTAAGAAG 57.252 37.500 0.00 0.00 36.78 2.85
398 399 5.124457 TGATTGGCTCTGTTCATTAAGAAGC 59.876 40.000 0.00 0.00 36.78 3.86
399 400 4.019792 TGGCTCTGTTCATTAAGAAGCA 57.980 40.909 0.00 0.00 36.78 3.91
400 401 4.397420 TGGCTCTGTTCATTAAGAAGCAA 58.603 39.130 0.00 0.00 36.78 3.91
401 402 4.826733 TGGCTCTGTTCATTAAGAAGCAAA 59.173 37.500 0.00 0.00 36.78 3.68
402 403 5.157067 GGCTCTGTTCATTAAGAAGCAAAC 58.843 41.667 0.00 0.00 36.78 2.93
403 404 5.157067 GCTCTGTTCATTAAGAAGCAAACC 58.843 41.667 0.00 0.00 36.78 3.27
404 405 5.278463 GCTCTGTTCATTAAGAAGCAAACCA 60.278 40.000 0.00 0.00 36.78 3.67
405 406 6.072112 TCTGTTCATTAAGAAGCAAACCAC 57.928 37.500 0.00 0.00 36.78 4.16
406 407 4.854399 TGTTCATTAAGAAGCAAACCACG 58.146 39.130 0.00 0.00 36.78 4.94
407 408 4.576873 TGTTCATTAAGAAGCAAACCACGA 59.423 37.500 0.00 0.00 36.78 4.35
408 409 5.147162 GTTCATTAAGAAGCAAACCACGAG 58.853 41.667 0.00 0.00 36.78 4.18
409 410 3.188460 TCATTAAGAAGCAAACCACGAGC 59.812 43.478 0.00 0.00 0.00 5.03
410 411 2.543777 TAAGAAGCAAACCACGAGCT 57.456 45.000 0.00 0.00 41.03 4.09
415 416 0.865769 AGCAAACCACGAGCTTAACG 59.134 50.000 0.00 0.00 34.37 3.18
416 417 0.863144 GCAAACCACGAGCTTAACGA 59.137 50.000 0.00 0.00 34.70 3.85
417 418 1.136336 GCAAACCACGAGCTTAACGAG 60.136 52.381 0.00 0.00 34.70 4.18
425 426 4.272100 GCTTAACGAGCCGAACCA 57.728 55.556 1.50 0.00 46.01 3.67
426 427 2.763651 GCTTAACGAGCCGAACCAT 58.236 52.632 1.50 0.00 46.01 3.55
427 428 0.651031 GCTTAACGAGCCGAACCATC 59.349 55.000 1.50 0.00 46.01 3.51
428 429 2.967709 GCTTAACGAGCCGAACCATCG 61.968 57.143 1.50 0.00 46.01 3.84
438 439 3.347411 GAACCATCGAGCGCTTAGT 57.653 52.632 13.26 1.74 0.00 2.24
439 440 2.486951 GAACCATCGAGCGCTTAGTA 57.513 50.000 13.26 0.00 0.00 1.82
440 441 2.805845 GAACCATCGAGCGCTTAGTAA 58.194 47.619 13.26 0.00 0.00 2.24
441 442 2.493713 ACCATCGAGCGCTTAGTAAG 57.506 50.000 13.26 5.47 0.00 2.34
459 460 2.179517 CTCGCGAGCTTCGACCTT 59.820 61.111 25.07 0.00 43.74 3.50
460 461 1.444553 CTCGCGAGCTTCGACCTTT 60.445 57.895 25.07 0.00 43.74 3.11
461 462 1.006571 TCGCGAGCTTCGACCTTTT 60.007 52.632 3.71 0.00 43.74 2.27
462 463 1.130613 CGCGAGCTTCGACCTTTTG 59.869 57.895 0.00 0.00 43.74 2.44
463 464 1.282248 CGCGAGCTTCGACCTTTTGA 61.282 55.000 0.00 0.00 43.74 2.69
464 465 1.079503 GCGAGCTTCGACCTTTTGAT 58.920 50.000 9.32 0.00 43.74 2.57
465 466 2.268298 GCGAGCTTCGACCTTTTGATA 58.732 47.619 9.32 0.00 43.74 2.15
466 467 2.029365 GCGAGCTTCGACCTTTTGATAC 59.971 50.000 9.32 0.00 43.74 2.24
467 468 3.250744 CGAGCTTCGACCTTTTGATACA 58.749 45.455 0.00 0.00 43.74 2.29
468 469 3.304559 CGAGCTTCGACCTTTTGATACAG 59.695 47.826 0.00 0.00 43.74 2.74
469 470 3.003480 AGCTTCGACCTTTTGATACAGC 58.997 45.455 0.00 0.00 0.00 4.40
470 471 2.096013 GCTTCGACCTTTTGATACAGCC 59.904 50.000 0.00 0.00 0.00 4.85
471 472 2.396590 TCGACCTTTTGATACAGCCC 57.603 50.000 0.00 0.00 0.00 5.19
472 473 1.906574 TCGACCTTTTGATACAGCCCT 59.093 47.619 0.00 0.00 0.00 5.19
473 474 3.101437 TCGACCTTTTGATACAGCCCTA 58.899 45.455 0.00 0.00 0.00 3.53
480 481 3.758755 TTGATACAGCCCTATCTGCAG 57.241 47.619 7.63 7.63 37.59 4.41
514 515 1.647545 GGAGCGCATGCAACAGCTAA 61.648 55.000 19.57 0.00 46.23 3.09
516 517 0.597568 AGCGCATGCAACAGCTAAAA 59.402 45.000 19.57 0.00 46.23 1.52
519 520 2.598589 CGCATGCAACAGCTAAAATGT 58.401 42.857 19.57 0.00 0.00 2.71
536 537 0.899019 TGTTGCCGCCTCATGTAGTA 59.101 50.000 0.00 0.00 0.00 1.82
540 541 4.635925 CGCCTCATGTAGTAGCGG 57.364 61.111 8.82 0.00 42.93 5.52
541 542 1.661821 CGCCTCATGTAGTAGCGGC 60.662 63.158 0.00 0.00 42.93 6.53
579 580 2.740055 CGTGCAGCAGGACCTGTC 60.740 66.667 22.58 14.50 35.28 3.51
676 681 1.599797 CGAGCCGGTCCAAAAACCT 60.600 57.895 1.90 0.00 37.15 3.50
689 694 2.431419 CAAAAACCTGTTTTACCCGGGT 59.569 45.455 32.66 32.66 43.53 5.28
777 810 7.896811 AGAGGGTCCTTTTTGACAATTTTATC 58.103 34.615 0.00 0.00 36.97 1.75
780 813 6.649141 GGGTCCTTTTTGACAATTTTATCCAC 59.351 38.462 0.00 0.00 36.97 4.02
783 816 8.764287 GTCCTTTTTGACAATTTTATCCACAAG 58.236 33.333 0.00 0.00 35.29 3.16
804 837 3.689649 AGTAGTCCTTTTTGGCAATAGCG 59.310 43.478 0.00 0.00 43.41 4.26
807 840 3.057526 AGTCCTTTTTGGCAATAGCGTTC 60.058 43.478 0.00 0.00 43.41 3.95
857 890 5.845985 GCATGCTTATGCGTATTCTAGAA 57.154 39.130 11.37 7.82 43.34 2.10
860 893 7.132213 GCATGCTTATGCGTATTCTAGAAAAA 58.868 34.615 11.37 0.00 43.34 1.94
861 894 7.112148 GCATGCTTATGCGTATTCTAGAAAAAC 59.888 37.037 11.37 9.91 43.34 2.43
862 895 6.701937 TGCTTATGCGTATTCTAGAAAAACG 58.298 36.000 26.93 26.93 43.34 3.60
951 984 1.492599 CCTCCATTCCTTCCTCCCTTC 59.507 57.143 0.00 0.00 0.00 3.46
1218 1251 3.200593 GAGCTCCTCGCCGTCGTA 61.201 66.667 0.87 0.00 40.39 3.43
1992 2025 1.640428 GTCTACGCAAGCTGCATGTA 58.360 50.000 6.74 0.67 45.36 2.29
2184 2217 3.202818 ACACATTTGGGGATGCAGAGATA 59.797 43.478 0.00 0.00 0.00 1.98
2307 2340 3.287222 CCTTGTCAAGGTGAAGGTGAAA 58.713 45.455 21.76 0.00 43.95 2.69
2695 2728 8.815141 TCTTTCATGTTTGTTACATTGATTGG 57.185 30.769 0.00 0.00 45.19 3.16
2711 2747 4.619973 TGATTGGTGATGTTGTTCTTTGC 58.380 39.130 0.00 0.00 0.00 3.68
2754 2790 8.934023 TCCTTAATTGTACCATGAAGTTCTTT 57.066 30.769 4.17 0.00 0.00 2.52
3409 3498 4.407296 GCTTCCCTGGAGATTCTTTCTAGA 59.593 45.833 0.00 0.00 33.74 2.43
3479 3581 1.340991 ACTTGTGCTTCACTGGTGGTT 60.341 47.619 0.70 0.00 35.11 3.67
3494 3596 5.941555 TGGTGGTTCCAGTTTTACATTTT 57.058 34.783 0.00 0.00 41.93 1.82
3523 3625 5.902613 TTGGATGAGAAGCATTTAAGTGG 57.097 39.130 0.00 0.00 37.34 4.00
3545 3647 6.013379 TGGGTTATCTTTTATCTGGTGCAAA 58.987 36.000 0.00 0.00 0.00 3.68
3574 3676 5.351465 TGTTTCTGTTCTGACTTCTGTTCAC 59.649 40.000 0.00 0.00 0.00 3.18
3600 3702 9.418839 CTATCTGATCATGGATCCTAGTTATCA 57.581 37.037 14.23 12.95 38.20 2.15
3625 3727 8.928733 CAAATTTTCACAATATTTAGCAGCAGT 58.071 29.630 0.00 0.00 0.00 4.40
3668 3770 7.012704 TGCATACTCTTTAAGATCATGCCTTTC 59.987 37.037 24.92 9.27 37.38 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.728129 TGTTAACGAGCGCTCACGAG 60.728 55.000 34.69 21.50 43.93 4.18
10 11 0.728129 CTGTTAACGAGCGCTCACGA 60.728 55.000 34.69 17.23 43.93 4.35
11 12 0.728129 TCTGTTAACGAGCGCTCACG 60.728 55.000 34.69 25.47 44.07 4.35
12 13 1.630148 ATCTGTTAACGAGCGCTCAC 58.370 50.000 34.69 25.13 0.00 3.51
13 14 2.363788 AATCTGTTAACGAGCGCTCA 57.636 45.000 34.69 15.09 0.00 4.26
14 15 3.724295 AAAATCTGTTAACGAGCGCTC 57.276 42.857 27.64 27.64 0.00 5.03
15 16 5.121768 ACATTAAAATCTGTTAACGAGCGCT 59.878 36.000 11.27 11.27 0.00 5.92
16 17 5.225129 CACATTAAAATCTGTTAACGAGCGC 59.775 40.000 0.00 0.00 0.00 5.92
17 18 6.304126 ACACATTAAAATCTGTTAACGAGCG 58.696 36.000 0.26 0.00 0.00 5.03
18 19 7.409343 GCAACACATTAAAATCTGTTAACGAGC 60.409 37.037 0.26 0.00 28.48 5.03
19 20 7.201149 CGCAACACATTAAAATCTGTTAACGAG 60.201 37.037 0.26 0.26 32.80 4.18
20 21 6.575572 CGCAACACATTAAAATCTGTTAACGA 59.424 34.615 0.26 2.02 32.80 3.85
21 22 6.575572 TCGCAACACATTAAAATCTGTTAACG 59.424 34.615 0.26 9.86 32.57 3.18
22 23 7.845617 TCGCAACACATTAAAATCTGTTAAC 57.154 32.000 0.00 0.00 28.48 2.01
23 24 8.511321 AGATCGCAACACATTAAAATCTGTTAA 58.489 29.630 0.00 0.00 28.48 2.01
24 25 8.039603 AGATCGCAACACATTAAAATCTGTTA 57.960 30.769 0.00 0.00 28.48 2.41
25 26 6.913170 AGATCGCAACACATTAAAATCTGTT 58.087 32.000 0.00 0.00 29.29 3.16
26 27 6.500684 AGATCGCAACACATTAAAATCTGT 57.499 33.333 0.00 0.00 0.00 3.41
27 28 7.463544 TGTAGATCGCAACACATTAAAATCTG 58.536 34.615 0.00 0.00 0.00 2.90
28 29 7.609760 TGTAGATCGCAACACATTAAAATCT 57.390 32.000 0.00 0.00 0.00 2.40
29 30 8.122330 TCATGTAGATCGCAACACATTAAAATC 58.878 33.333 0.00 0.00 29.31 2.17
30 31 7.984391 TCATGTAGATCGCAACACATTAAAAT 58.016 30.769 0.00 0.00 29.31 1.82
31 32 7.371126 TCATGTAGATCGCAACACATTAAAA 57.629 32.000 0.00 0.00 29.31 1.52
32 33 6.976636 TCATGTAGATCGCAACACATTAAA 57.023 33.333 0.00 0.00 29.31 1.52
33 34 8.711457 CATATCATGTAGATCGCAACACATTAA 58.289 33.333 0.00 0.00 38.19 1.40
34 35 7.148590 GCATATCATGTAGATCGCAACACATTA 60.149 37.037 0.00 0.00 38.19 1.90
35 36 6.347969 GCATATCATGTAGATCGCAACACATT 60.348 38.462 0.00 0.00 38.19 2.71
36 37 5.121298 GCATATCATGTAGATCGCAACACAT 59.879 40.000 0.00 0.00 38.19 3.21
37 38 4.448732 GCATATCATGTAGATCGCAACACA 59.551 41.667 0.00 0.00 38.19 3.72
38 39 4.433413 CGCATATCATGTAGATCGCAACAC 60.433 45.833 0.00 0.00 38.19 3.32
39 40 3.674753 CGCATATCATGTAGATCGCAACA 59.325 43.478 0.00 1.84 38.19 3.33
40 41 3.675225 ACGCATATCATGTAGATCGCAAC 59.325 43.478 0.00 0.00 38.19 4.17
41 42 3.913089 ACGCATATCATGTAGATCGCAA 58.087 40.909 0.00 0.00 38.19 4.85
42 43 3.191371 AGACGCATATCATGTAGATCGCA 59.809 43.478 0.00 0.00 38.19 5.10
43 44 3.763902 AGACGCATATCATGTAGATCGC 58.236 45.455 0.00 0.00 38.19 4.58
44 45 6.351327 TCTAGACGCATATCATGTAGATCG 57.649 41.667 0.00 0.00 38.19 3.69
45 46 9.877137 CTAATCTAGACGCATATCATGTAGATC 57.123 37.037 0.00 0.00 38.19 2.75
46 47 8.845227 CCTAATCTAGACGCATATCATGTAGAT 58.155 37.037 0.00 0.00 40.86 1.98
47 48 7.829706 ACCTAATCTAGACGCATATCATGTAGA 59.170 37.037 0.00 0.00 0.00 2.59
48 49 7.990917 ACCTAATCTAGACGCATATCATGTAG 58.009 38.462 0.00 0.00 0.00 2.74
49 50 7.939784 ACCTAATCTAGACGCATATCATGTA 57.060 36.000 0.00 0.00 0.00 2.29
50 51 6.842437 ACCTAATCTAGACGCATATCATGT 57.158 37.500 0.00 0.00 0.00 3.21
51 52 8.539770 AAAACCTAATCTAGACGCATATCATG 57.460 34.615 0.00 0.00 0.00 3.07
57 58 9.099454 CTTCTTAAAAACCTAATCTAGACGCAT 57.901 33.333 0.00 0.00 0.00 4.73
58 59 7.548075 CCTTCTTAAAAACCTAATCTAGACGCA 59.452 37.037 0.00 0.00 0.00 5.24
59 60 7.763071 TCCTTCTTAAAAACCTAATCTAGACGC 59.237 37.037 0.00 0.00 0.00 5.19
60 61 9.649167 TTCCTTCTTAAAAACCTAATCTAGACG 57.351 33.333 0.00 0.00 0.00 4.18
64 65 9.649167 CGTCTTCCTTCTTAAAAACCTAATCTA 57.351 33.333 0.00 0.00 0.00 1.98
65 66 7.606839 CCGTCTTCCTTCTTAAAAACCTAATCT 59.393 37.037 0.00 0.00 0.00 2.40
66 67 7.389884 ACCGTCTTCCTTCTTAAAAACCTAATC 59.610 37.037 0.00 0.00 0.00 1.75
67 68 7.174426 CACCGTCTTCCTTCTTAAAAACCTAAT 59.826 37.037 0.00 0.00 0.00 1.73
68 69 6.484308 CACCGTCTTCCTTCTTAAAAACCTAA 59.516 38.462 0.00 0.00 0.00 2.69
69 70 5.993441 CACCGTCTTCCTTCTTAAAAACCTA 59.007 40.000 0.00 0.00 0.00 3.08
70 71 4.820173 CACCGTCTTCCTTCTTAAAAACCT 59.180 41.667 0.00 0.00 0.00 3.50
71 72 4.818005 TCACCGTCTTCCTTCTTAAAAACC 59.182 41.667 0.00 0.00 0.00 3.27
72 73 5.526479 AGTCACCGTCTTCCTTCTTAAAAAC 59.474 40.000 0.00 0.00 0.00 2.43
73 74 5.677567 AGTCACCGTCTTCCTTCTTAAAAA 58.322 37.500 0.00 0.00 0.00 1.94
74 75 5.286267 AGTCACCGTCTTCCTTCTTAAAA 57.714 39.130 0.00 0.00 0.00 1.52
75 76 4.950205 AGTCACCGTCTTCCTTCTTAAA 57.050 40.909 0.00 0.00 0.00 1.52
76 77 4.828939 TGTAGTCACCGTCTTCCTTCTTAA 59.171 41.667 0.00 0.00 0.00 1.85
77 78 4.401022 TGTAGTCACCGTCTTCCTTCTTA 58.599 43.478 0.00 0.00 0.00 2.10
78 79 3.228453 TGTAGTCACCGTCTTCCTTCTT 58.772 45.455 0.00 0.00 0.00 2.52
79 80 2.872732 TGTAGTCACCGTCTTCCTTCT 58.127 47.619 0.00 0.00 0.00 2.85
80 81 3.655276 TTGTAGTCACCGTCTTCCTTC 57.345 47.619 0.00 0.00 0.00 3.46
81 82 4.377897 CTTTTGTAGTCACCGTCTTCCTT 58.622 43.478 0.00 0.00 0.00 3.36
82 83 3.244112 CCTTTTGTAGTCACCGTCTTCCT 60.244 47.826 0.00 0.00 0.00 3.36
83 84 3.064931 CCTTTTGTAGTCACCGTCTTCC 58.935 50.000 0.00 0.00 0.00 3.46
84 85 3.986277 TCCTTTTGTAGTCACCGTCTTC 58.014 45.455 0.00 0.00 0.00 2.87
85 86 4.411256 TTCCTTTTGTAGTCACCGTCTT 57.589 40.909 0.00 0.00 0.00 3.01
86 87 4.411256 TTTCCTTTTGTAGTCACCGTCT 57.589 40.909 0.00 0.00 0.00 4.18
87 88 4.612939 GCATTTCCTTTTGTAGTCACCGTC 60.613 45.833 0.00 0.00 0.00 4.79
88 89 3.252458 GCATTTCCTTTTGTAGTCACCGT 59.748 43.478 0.00 0.00 0.00 4.83
89 90 3.252215 TGCATTTCCTTTTGTAGTCACCG 59.748 43.478 0.00 0.00 0.00 4.94
90 91 4.278419 AGTGCATTTCCTTTTGTAGTCACC 59.722 41.667 0.00 0.00 0.00 4.02
91 92 5.438761 AGTGCATTTCCTTTTGTAGTCAC 57.561 39.130 0.00 0.00 0.00 3.67
92 93 6.296026 ACTAGTGCATTTCCTTTTGTAGTCA 58.704 36.000 0.00 0.00 0.00 3.41
93 94 6.803154 ACTAGTGCATTTCCTTTTGTAGTC 57.197 37.500 0.00 0.00 0.00 2.59
94 95 7.068226 ACAAACTAGTGCATTTCCTTTTGTAGT 59.932 33.333 0.00 0.00 34.90 2.73
95 96 7.425606 ACAAACTAGTGCATTTCCTTTTGTAG 58.574 34.615 0.00 0.00 34.90 2.74
96 97 7.341445 ACAAACTAGTGCATTTCCTTTTGTA 57.659 32.000 0.00 0.00 34.90 2.41
97 98 6.220726 ACAAACTAGTGCATTTCCTTTTGT 57.779 33.333 0.00 0.00 32.48 2.83
98 99 6.509997 GCAACAAACTAGTGCATTTCCTTTTG 60.510 38.462 0.00 0.00 0.00 2.44
99 100 5.523552 GCAACAAACTAGTGCATTTCCTTTT 59.476 36.000 0.00 0.00 0.00 2.27
100 101 5.049828 GCAACAAACTAGTGCATTTCCTTT 58.950 37.500 0.00 0.00 0.00 3.11
101 102 4.501400 GGCAACAAACTAGTGCATTTCCTT 60.501 41.667 0.00 0.00 0.00 3.36
102 103 3.005791 GGCAACAAACTAGTGCATTTCCT 59.994 43.478 0.00 0.00 0.00 3.36
103 104 3.005791 AGGCAACAAACTAGTGCATTTCC 59.994 43.478 0.00 0.00 41.41 3.13
104 105 4.229876 GAGGCAACAAACTAGTGCATTTC 58.770 43.478 0.00 0.00 41.41 2.17
105 106 3.005791 GGAGGCAACAAACTAGTGCATTT 59.994 43.478 0.00 0.00 41.41 2.32
106 107 2.558359 GGAGGCAACAAACTAGTGCATT 59.442 45.455 0.00 0.00 41.41 3.56
107 108 2.162681 GGAGGCAACAAACTAGTGCAT 58.837 47.619 0.00 0.00 41.41 3.96
108 109 1.142870 AGGAGGCAACAAACTAGTGCA 59.857 47.619 0.00 0.00 41.41 4.57
109 110 1.897560 AGGAGGCAACAAACTAGTGC 58.102 50.000 0.00 0.00 41.41 4.40
110 111 4.579869 ACATAGGAGGCAACAAACTAGTG 58.420 43.478 0.00 0.00 41.41 2.74
111 112 4.910458 ACATAGGAGGCAACAAACTAGT 57.090 40.909 0.00 0.00 41.41 2.57
112 113 6.222038 TCTACATAGGAGGCAACAAACTAG 57.778 41.667 0.00 0.00 41.41 2.57
113 114 6.808321 ATCTACATAGGAGGCAACAAACTA 57.192 37.500 0.00 0.00 41.41 2.24
114 115 5.700402 ATCTACATAGGAGGCAACAAACT 57.300 39.130 0.00 0.00 41.41 2.66
115 116 7.272978 TCTAATCTACATAGGAGGCAACAAAC 58.727 38.462 0.00 0.00 41.41 2.93
116 117 7.432148 TCTAATCTACATAGGAGGCAACAAA 57.568 36.000 0.00 0.00 41.41 2.83
117 118 7.618019 ATCTAATCTACATAGGAGGCAACAA 57.382 36.000 0.00 0.00 41.41 2.83
118 119 7.290014 TCAATCTAATCTACATAGGAGGCAACA 59.710 37.037 0.00 0.00 41.41 3.33
119 120 7.671302 TCAATCTAATCTACATAGGAGGCAAC 58.329 38.462 0.00 0.00 0.00 4.17
120 121 7.510685 ACTCAATCTAATCTACATAGGAGGCAA 59.489 37.037 0.00 0.00 0.00 4.52
121 122 7.013220 ACTCAATCTAATCTACATAGGAGGCA 58.987 38.462 0.00 0.00 0.00 4.75
122 123 7.319646 CACTCAATCTAATCTACATAGGAGGC 58.680 42.308 0.00 0.00 0.00 4.70
123 124 7.671819 TCCACTCAATCTAATCTACATAGGAGG 59.328 40.741 0.00 0.00 0.00 4.30
124 125 8.642935 TCCACTCAATCTAATCTACATAGGAG 57.357 38.462 0.00 0.00 0.00 3.69
125 126 9.029368 CATCCACTCAATCTAATCTACATAGGA 57.971 37.037 0.00 0.00 0.00 2.94
126 127 7.763528 GCATCCACTCAATCTAATCTACATAGG 59.236 40.741 0.00 0.00 0.00 2.57
127 128 7.487509 CGCATCCACTCAATCTAATCTACATAG 59.512 40.741 0.00 0.00 0.00 2.23
128 129 7.315890 CGCATCCACTCAATCTAATCTACATA 58.684 38.462 0.00 0.00 0.00 2.29
129 130 6.162079 CGCATCCACTCAATCTAATCTACAT 58.838 40.000 0.00 0.00 0.00 2.29
130 131 5.532557 CGCATCCACTCAATCTAATCTACA 58.467 41.667 0.00 0.00 0.00 2.74
131 132 4.387256 GCGCATCCACTCAATCTAATCTAC 59.613 45.833 0.30 0.00 0.00 2.59
132 133 4.281941 AGCGCATCCACTCAATCTAATCTA 59.718 41.667 11.47 0.00 0.00 1.98
133 134 3.070734 AGCGCATCCACTCAATCTAATCT 59.929 43.478 11.47 0.00 0.00 2.40
134 135 3.397482 AGCGCATCCACTCAATCTAATC 58.603 45.455 11.47 0.00 0.00 1.75
135 136 3.181462 TGAGCGCATCCACTCAATCTAAT 60.181 43.478 11.47 0.00 39.89 1.73
136 137 2.168313 TGAGCGCATCCACTCAATCTAA 59.832 45.455 11.47 0.00 39.89 2.10
137 138 1.756538 TGAGCGCATCCACTCAATCTA 59.243 47.619 11.47 0.00 39.89 1.98
138 139 0.538584 TGAGCGCATCCACTCAATCT 59.461 50.000 11.47 0.00 39.89 2.40
139 140 1.263484 CATGAGCGCATCCACTCAATC 59.737 52.381 11.47 0.00 45.49 2.67
140 141 1.306148 CATGAGCGCATCCACTCAAT 58.694 50.000 11.47 0.00 45.49 2.57
141 142 0.036105 ACATGAGCGCATCCACTCAA 60.036 50.000 11.47 0.00 45.49 3.02
142 143 0.741927 CACATGAGCGCATCCACTCA 60.742 55.000 11.47 3.15 46.34 3.41
143 144 2.012237 CACATGAGCGCATCCACTC 58.988 57.895 11.47 0.00 30.68 3.51
144 145 2.110967 GCACATGAGCGCATCCACT 61.111 57.895 11.47 0.00 30.68 4.00
145 146 0.811219 TAGCACATGAGCGCATCCAC 60.811 55.000 11.47 0.00 40.15 4.02
146 147 0.811219 GTAGCACATGAGCGCATCCA 60.811 55.000 11.47 4.67 40.15 3.41
147 148 0.811219 TGTAGCACATGAGCGCATCC 60.811 55.000 11.47 0.00 40.15 3.51
148 149 1.009078 TTGTAGCACATGAGCGCATC 58.991 50.000 11.47 4.91 40.15 3.91
149 150 1.452110 TTTGTAGCACATGAGCGCAT 58.548 45.000 11.47 0.00 40.15 4.73
150 151 1.233919 TTTTGTAGCACATGAGCGCA 58.766 45.000 11.47 9.94 40.15 6.09
151 152 2.330231 TTTTTGTAGCACATGAGCGC 57.670 45.000 9.55 0.00 40.15 5.92
152 153 4.029418 CGAAATTTTTGTAGCACATGAGCG 59.971 41.667 9.55 0.00 40.15 5.03
153 154 4.917415 ACGAAATTTTTGTAGCACATGAGC 59.083 37.500 7.07 7.07 0.00 4.26
154 155 6.142139 TGACGAAATTTTTGTAGCACATGAG 58.858 36.000 0.00 0.00 0.00 2.90
155 156 6.066054 TGACGAAATTTTTGTAGCACATGA 57.934 33.333 0.00 0.00 0.00 3.07
156 157 5.343058 CCTGACGAAATTTTTGTAGCACATG 59.657 40.000 1.94 0.00 0.00 3.21
157 158 5.009610 ACCTGACGAAATTTTTGTAGCACAT 59.990 36.000 1.94 0.00 0.00 3.21
158 159 4.336993 ACCTGACGAAATTTTTGTAGCACA 59.663 37.500 1.94 0.00 0.00 4.57
159 160 4.855531 ACCTGACGAAATTTTTGTAGCAC 58.144 39.130 1.94 0.00 0.00 4.40
160 161 6.483974 TCTTACCTGACGAAATTTTTGTAGCA 59.516 34.615 1.94 0.00 0.00 3.49
161 162 6.894828 TCTTACCTGACGAAATTTTTGTAGC 58.105 36.000 1.94 0.00 0.00 3.58
162 163 8.717821 TCATCTTACCTGACGAAATTTTTGTAG 58.282 33.333 1.94 1.87 0.00 2.74
163 164 8.610248 TCATCTTACCTGACGAAATTTTTGTA 57.390 30.769 1.94 0.00 0.00 2.41
164 165 7.504924 TCATCTTACCTGACGAAATTTTTGT 57.495 32.000 1.52 1.52 0.00 2.83
165 166 8.795786 TTTCATCTTACCTGACGAAATTTTTG 57.204 30.769 0.00 0.00 0.00 2.44
166 167 9.981114 ATTTTCATCTTACCTGACGAAATTTTT 57.019 25.926 0.00 0.00 30.09 1.94
195 196 9.118300 AGTAGCTCGTTAGTAACAATAGTACAT 57.882 33.333 13.33 0.10 0.00 2.29
196 197 8.498054 AGTAGCTCGTTAGTAACAATAGTACA 57.502 34.615 13.33 0.00 0.00 2.90
197 198 8.986039 GAGTAGCTCGTTAGTAACAATAGTAC 57.014 38.462 13.33 7.41 0.00 2.73
214 215 4.501198 GCTAATGAGTTTCACGAGTAGCTC 59.499 45.833 0.00 0.00 30.06 4.09
215 216 4.158764 AGCTAATGAGTTTCACGAGTAGCT 59.841 41.667 0.00 0.00 34.32 3.32
216 217 4.425520 AGCTAATGAGTTTCACGAGTAGC 58.574 43.478 0.00 0.00 31.48 3.58
217 218 4.731000 CGAGCTAATGAGTTTCACGAGTAG 59.269 45.833 0.00 0.00 0.00 2.57
218 219 4.155462 ACGAGCTAATGAGTTTCACGAGTA 59.845 41.667 0.00 0.00 0.00 2.59
219 220 3.057456 ACGAGCTAATGAGTTTCACGAGT 60.057 43.478 0.00 0.00 0.00 4.18
220 221 3.502920 ACGAGCTAATGAGTTTCACGAG 58.497 45.455 0.00 0.00 0.00 4.18
221 222 3.570926 ACGAGCTAATGAGTTTCACGA 57.429 42.857 0.00 0.00 0.00 4.35
222 223 3.241364 CGAACGAGCTAATGAGTTTCACG 60.241 47.826 0.00 0.00 0.00 4.35
223 224 3.673809 ACGAACGAGCTAATGAGTTTCAC 59.326 43.478 0.14 0.00 0.00 3.18
224 225 3.909430 ACGAACGAGCTAATGAGTTTCA 58.091 40.909 0.14 0.00 0.00 2.69
225 226 4.905412 AACGAACGAGCTAATGAGTTTC 57.095 40.909 0.14 0.00 0.00 2.78
226 227 5.924825 ACTTAACGAACGAGCTAATGAGTTT 59.075 36.000 0.14 0.00 0.00 2.66
227 228 5.467705 ACTTAACGAACGAGCTAATGAGTT 58.532 37.500 0.14 0.00 0.00 3.01
228 229 5.056894 ACTTAACGAACGAGCTAATGAGT 57.943 39.130 0.14 0.00 0.00 3.41
229 230 5.275326 CGAACTTAACGAACGAGCTAATGAG 60.275 44.000 0.14 0.00 0.00 2.90
230 231 4.556135 CGAACTTAACGAACGAGCTAATGA 59.444 41.667 0.14 0.00 0.00 2.57
231 232 4.322804 ACGAACTTAACGAACGAGCTAATG 59.677 41.667 0.14 0.00 34.70 1.90
232 233 4.479619 ACGAACTTAACGAACGAGCTAAT 58.520 39.130 0.14 0.00 34.70 1.73
233 234 3.888934 ACGAACTTAACGAACGAGCTAA 58.111 40.909 0.14 0.00 34.70 3.09
234 235 3.542712 ACGAACTTAACGAACGAGCTA 57.457 42.857 0.14 0.00 34.70 3.32
235 236 2.412421 ACGAACTTAACGAACGAGCT 57.588 45.000 0.14 0.00 34.70 4.09
236 237 4.612482 CTTAACGAACTTAACGAACGAGC 58.388 43.478 0.14 0.00 34.70 5.03
237 238 4.380974 AGCTTAACGAACTTAACGAACGAG 59.619 41.667 0.14 0.00 34.70 4.18
238 239 4.290155 AGCTTAACGAACTTAACGAACGA 58.710 39.130 0.14 0.00 34.70 3.85
239 240 4.619931 AGCTTAACGAACTTAACGAACG 57.380 40.909 0.00 0.00 34.70 3.95
240 241 7.737096 GTTAAGCTTAACGAACTTAACGAAC 57.263 36.000 28.44 8.17 43.20 3.95
258 259 6.255020 CAATCATGGATTTCAGCTTGTTAAGC 59.745 38.462 5.45 5.45 41.48 3.09
259 260 7.751047 CAATCATGGATTTCAGCTTGTTAAG 57.249 36.000 0.00 0.00 28.87 1.85
260 261 8.936203 AGCCAATCATGGATTTCAGCTTGTTAA 61.936 37.037 0.00 0.00 44.90 2.01
261 262 7.534256 AGCCAATCATGGATTTCAGCTTGTTA 61.534 38.462 0.00 0.00 44.90 2.41
262 263 6.800041 AGCCAATCATGGATTTCAGCTTGTT 61.800 40.000 0.00 0.00 44.90 2.83
263 264 5.359484 AGCCAATCATGGATTTCAGCTTGT 61.359 41.667 0.00 0.00 44.90 3.16
264 265 3.132289 AGCCAATCATGGATTTCAGCTTG 59.868 43.478 0.00 0.00 44.90 4.01
265 266 3.371965 AGCCAATCATGGATTTCAGCTT 58.628 40.909 0.00 0.00 44.90 3.74
266 267 3.028094 AGCCAATCATGGATTTCAGCT 57.972 42.857 0.00 0.00 44.90 4.24
276 277 6.688637 TCTTAATGAACAGAGCCAATCATG 57.311 37.500 0.00 0.00 33.06 3.07
277 278 6.183360 GCTTCTTAATGAACAGAGCCAATCAT 60.183 38.462 0.00 0.00 34.11 2.45
278 279 5.124457 GCTTCTTAATGAACAGAGCCAATCA 59.876 40.000 0.00 0.00 0.00 2.57
279 280 5.576895 GCTTCTTAATGAACAGAGCCAATC 58.423 41.667 0.00 0.00 0.00 2.67
280 281 4.095483 CGCTTCTTAATGAACAGAGCCAAT 59.905 41.667 0.00 0.00 0.00 3.16
281 282 3.436704 CGCTTCTTAATGAACAGAGCCAA 59.563 43.478 0.00 0.00 0.00 4.52
282 283 3.002791 CGCTTCTTAATGAACAGAGCCA 58.997 45.455 0.00 0.00 0.00 4.75
283 284 3.262420 TCGCTTCTTAATGAACAGAGCC 58.738 45.455 0.00 0.00 0.00 4.70
284 285 4.436183 GGTTCGCTTCTTAATGAACAGAGC 60.436 45.833 6.32 0.00 41.84 4.09
285 286 4.690748 TGGTTCGCTTCTTAATGAACAGAG 59.309 41.667 6.32 0.00 41.84 3.35
286 287 4.451096 GTGGTTCGCTTCTTAATGAACAGA 59.549 41.667 6.32 0.00 41.84 3.41
287 288 4.213270 TGTGGTTCGCTTCTTAATGAACAG 59.787 41.667 6.32 0.00 41.84 3.16
288 289 4.130857 TGTGGTTCGCTTCTTAATGAACA 58.869 39.130 6.32 0.00 41.84 3.18
289 290 4.742438 TGTGGTTCGCTTCTTAATGAAC 57.258 40.909 0.00 0.00 39.89 3.18
290 291 4.320202 GCTTGTGGTTCGCTTCTTAATGAA 60.320 41.667 0.00 0.00 0.00 2.57
291 292 3.188460 GCTTGTGGTTCGCTTCTTAATGA 59.812 43.478 0.00 0.00 0.00 2.57
292 293 3.189287 AGCTTGTGGTTCGCTTCTTAATG 59.811 43.478 0.00 0.00 0.00 1.90
293 294 3.412386 AGCTTGTGGTTCGCTTCTTAAT 58.588 40.909 0.00 0.00 0.00 1.40
294 295 2.846193 AGCTTGTGGTTCGCTTCTTAA 58.154 42.857 0.00 0.00 0.00 1.85
295 296 2.543777 AGCTTGTGGTTCGCTTCTTA 57.456 45.000 0.00 0.00 0.00 2.10
296 297 1.680338 AAGCTTGTGGTTCGCTTCTT 58.320 45.000 0.00 0.00 39.62 2.52
297 298 2.543777 TAAGCTTGTGGTTCGCTTCT 57.456 45.000 9.86 0.00 42.48 2.85
298 299 2.661979 CGTTAAGCTTGTGGTTCGCTTC 60.662 50.000 9.86 0.00 42.48 3.86
299 300 1.263217 CGTTAAGCTTGTGGTTCGCTT 59.737 47.619 9.86 0.00 45.15 4.68
300 301 0.865769 CGTTAAGCTTGTGGTTCGCT 59.134 50.000 9.86 0.00 35.36 4.93
301 302 0.110373 CCGTTAAGCTTGTGGTTCGC 60.110 55.000 9.86 0.00 35.36 4.70
302 303 0.515564 CCCGTTAAGCTTGTGGTTCG 59.484 55.000 9.86 4.73 35.36 3.95
303 304 0.240145 GCCCGTTAAGCTTGTGGTTC 59.760 55.000 9.86 0.00 35.36 3.62
304 305 0.179001 AGCCCGTTAAGCTTGTGGTT 60.179 50.000 9.86 0.00 37.24 3.67
305 306 0.688487 TAGCCCGTTAAGCTTGTGGT 59.312 50.000 9.86 1.13 41.83 4.16
306 307 1.084289 GTAGCCCGTTAAGCTTGTGG 58.916 55.000 9.86 7.82 41.83 4.17
307 308 2.000447 GAGTAGCCCGTTAAGCTTGTG 59.000 52.381 9.86 0.00 41.83 3.33
308 309 1.621814 TGAGTAGCCCGTTAAGCTTGT 59.378 47.619 9.86 0.00 41.83 3.16
309 310 2.380084 TGAGTAGCCCGTTAAGCTTG 57.620 50.000 9.86 0.00 41.83 4.01
310 311 2.500098 TCATGAGTAGCCCGTTAAGCTT 59.500 45.455 3.48 3.48 41.83 3.74
311 312 2.108168 TCATGAGTAGCCCGTTAAGCT 58.892 47.619 0.00 0.00 44.49 3.74
312 313 2.596904 TCATGAGTAGCCCGTTAAGC 57.403 50.000 0.00 0.00 0.00 3.09
313 314 4.504858 AGTTTCATGAGTAGCCCGTTAAG 58.495 43.478 0.00 0.00 0.00 1.85
314 315 4.501071 GAGTTTCATGAGTAGCCCGTTAA 58.499 43.478 0.00 0.00 0.00 2.01
315 316 3.428452 CGAGTTTCATGAGTAGCCCGTTA 60.428 47.826 0.00 0.00 0.00 3.18
316 317 2.674177 CGAGTTTCATGAGTAGCCCGTT 60.674 50.000 0.00 0.00 0.00 4.44
317 318 1.135083 CGAGTTTCATGAGTAGCCCGT 60.135 52.381 0.00 0.00 0.00 5.28
318 319 1.135083 ACGAGTTTCATGAGTAGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
319 320 2.674796 ACGAGTTTCATGAGTAGCCC 57.325 50.000 0.00 0.00 0.00 5.19
320 321 3.552294 GCTAACGAGTTTCATGAGTAGCC 59.448 47.826 0.00 0.00 0.00 3.93
321 322 4.425520 AGCTAACGAGTTTCATGAGTAGC 58.574 43.478 0.00 2.75 0.00 3.58
322 323 4.731000 CGAGCTAACGAGTTTCATGAGTAG 59.269 45.833 0.00 0.00 35.09 2.57
323 324 4.155462 ACGAGCTAACGAGTTTCATGAGTA 59.845 41.667 1.33 0.00 37.03 2.59
324 325 3.057456 ACGAGCTAACGAGTTTCATGAGT 60.057 43.478 1.33 0.00 37.03 3.41
325 326 3.502920 ACGAGCTAACGAGTTTCATGAG 58.497 45.455 1.33 0.00 37.03 2.90
326 327 3.570926 ACGAGCTAACGAGTTTCATGA 57.429 42.857 1.33 0.00 37.03 3.07
327 328 3.241364 CGAACGAGCTAACGAGTTTCATG 60.241 47.826 1.33 0.00 37.03 3.07
328 329 2.915463 CGAACGAGCTAACGAGTTTCAT 59.085 45.455 1.33 0.00 37.03 2.57
329 330 2.287188 ACGAACGAGCTAACGAGTTTCA 60.287 45.455 1.33 0.00 37.03 2.69
330 331 2.314122 ACGAACGAGCTAACGAGTTTC 58.686 47.619 1.33 0.00 37.03 2.78
331 332 2.412421 ACGAACGAGCTAACGAGTTT 57.588 45.000 1.33 0.00 37.03 2.66
332 333 2.412421 AACGAACGAGCTAACGAGTT 57.588 45.000 1.33 2.82 37.03 3.01
333 334 3.486584 CTTAACGAACGAGCTAACGAGT 58.513 45.455 1.33 0.00 37.03 4.18
334 335 2.275767 GCTTAACGAACGAGCTAACGAG 59.724 50.000 1.33 0.00 37.03 4.18
335 336 2.095567 AGCTTAACGAACGAGCTAACGA 60.096 45.455 1.33 0.00 44.41 3.85
336 337 2.248487 AGCTTAACGAACGAGCTAACG 58.752 47.619 7.02 0.00 44.41 3.18
337 338 5.536513 GTTAAGCTTAACGAACGAGCTAAC 58.463 41.667 28.44 8.58 45.42 2.34
338 339 5.752098 GTTAAGCTTAACGAACGAGCTAA 57.248 39.130 28.44 0.00 45.42 3.09
354 355 8.640362 CAATCATGGATTCCAGCTCGTTAAGC 62.640 46.154 11.78 0.00 39.68 3.09
355 356 3.797039 TCATGGATTCCAGCTCGTTAAG 58.203 45.455 11.78 0.00 36.75 1.85
356 357 3.904800 TCATGGATTCCAGCTCGTTAA 57.095 42.857 11.78 0.00 36.75 2.01
357 358 4.129380 CAATCATGGATTCCAGCTCGTTA 58.871 43.478 11.78 0.00 36.75 3.18
358 359 2.947652 CAATCATGGATTCCAGCTCGTT 59.052 45.455 11.78 0.00 36.75 3.85
359 360 2.569059 CAATCATGGATTCCAGCTCGT 58.431 47.619 11.78 0.00 36.75 4.18
361 362 2.752154 AGCCAATCATGGATTCCAGCTC 60.752 50.000 11.78 0.00 44.90 4.09
362 363 1.217183 AGCCAATCATGGATTCCAGCT 59.783 47.619 11.78 10.00 44.90 4.24
363 364 1.700955 AGCCAATCATGGATTCCAGC 58.299 50.000 11.78 7.81 44.90 4.85
372 373 6.688637 TCTTAATGAACAGAGCCAATCATG 57.311 37.500 0.00 0.00 33.06 3.07
373 374 6.183360 GCTTCTTAATGAACAGAGCCAATCAT 60.183 38.462 0.00 0.00 34.11 2.45
374 375 5.124457 GCTTCTTAATGAACAGAGCCAATCA 59.876 40.000 0.00 0.00 0.00 2.57
375 376 5.124457 TGCTTCTTAATGAACAGAGCCAATC 59.876 40.000 0.00 0.00 0.00 2.67
376 377 5.012239 TGCTTCTTAATGAACAGAGCCAAT 58.988 37.500 0.00 0.00 0.00 3.16
377 378 4.397420 TGCTTCTTAATGAACAGAGCCAA 58.603 39.130 0.00 0.00 0.00 4.52
378 379 4.019792 TGCTTCTTAATGAACAGAGCCA 57.980 40.909 0.00 0.00 0.00 4.75
379 380 5.157067 GTTTGCTTCTTAATGAACAGAGCC 58.843 41.667 0.00 0.00 0.00 4.70
380 381 5.157067 GGTTTGCTTCTTAATGAACAGAGC 58.843 41.667 0.00 0.00 0.00 4.09
381 382 6.145535 GTGGTTTGCTTCTTAATGAACAGAG 58.854 40.000 0.00 0.00 0.00 3.35
382 383 5.277779 CGTGGTTTGCTTCTTAATGAACAGA 60.278 40.000 0.00 0.00 0.00 3.41
383 384 4.911610 CGTGGTTTGCTTCTTAATGAACAG 59.088 41.667 0.00 0.00 0.00 3.16
384 385 4.576873 TCGTGGTTTGCTTCTTAATGAACA 59.423 37.500 0.00 0.00 0.00 3.18
385 386 5.103290 TCGTGGTTTGCTTCTTAATGAAC 57.897 39.130 0.00 0.00 0.00 3.18
386 387 4.320202 GCTCGTGGTTTGCTTCTTAATGAA 60.320 41.667 0.00 0.00 0.00 2.57
387 388 3.188460 GCTCGTGGTTTGCTTCTTAATGA 59.812 43.478 0.00 0.00 0.00 2.57
388 389 3.189287 AGCTCGTGGTTTGCTTCTTAATG 59.811 43.478 0.00 0.00 32.61 1.90
389 390 3.412386 AGCTCGTGGTTTGCTTCTTAAT 58.588 40.909 0.00 0.00 32.61 1.40
390 391 2.846193 AGCTCGTGGTTTGCTTCTTAA 58.154 42.857 0.00 0.00 32.61 1.85
391 392 2.543777 AGCTCGTGGTTTGCTTCTTA 57.456 45.000 0.00 0.00 32.61 2.10
392 393 1.680338 AAGCTCGTGGTTTGCTTCTT 58.320 45.000 0.00 0.00 42.52 2.52
393 394 2.543777 TAAGCTCGTGGTTTGCTTCT 57.456 45.000 7.27 0.00 44.59 2.85
394 395 2.661979 CGTTAAGCTCGTGGTTTGCTTC 60.662 50.000 7.27 0.00 44.59 3.86
395 396 1.263217 CGTTAAGCTCGTGGTTTGCTT 59.737 47.619 7.27 0.00 46.87 3.91
396 397 0.865769 CGTTAAGCTCGTGGTTTGCT 59.134 50.000 7.27 0.00 38.87 3.91
397 398 0.863144 TCGTTAAGCTCGTGGTTTGC 59.137 50.000 7.27 0.84 35.36 3.68
398 399 2.856091 CTCGTTAAGCTCGTGGTTTG 57.144 50.000 7.27 0.00 35.36 2.93
409 410 0.921347 CGATGGTTCGGCTCGTTAAG 59.079 55.000 0.00 0.00 41.74 1.85
410 411 0.527113 TCGATGGTTCGGCTCGTTAA 59.473 50.000 0.00 0.00 45.53 2.01
411 412 0.099968 CTCGATGGTTCGGCTCGTTA 59.900 55.000 0.00 0.00 45.53 3.18
412 413 1.153823 CTCGATGGTTCGGCTCGTT 60.154 57.895 0.00 0.00 45.53 3.85
413 414 2.490217 CTCGATGGTTCGGCTCGT 59.510 61.111 0.00 0.00 45.53 4.18
414 415 2.956964 GCTCGATGGTTCGGCTCG 60.957 66.667 0.00 0.00 45.53 5.03
415 416 2.956964 CGCTCGATGGTTCGGCTC 60.957 66.667 0.00 0.00 45.53 4.70
418 419 1.209275 CTAAGCGCTCGATGGTTCGG 61.209 60.000 12.06 0.00 45.53 4.30
419 420 0.525668 ACTAAGCGCTCGATGGTTCG 60.526 55.000 12.06 3.35 46.87 3.95
420 421 2.486951 TACTAAGCGCTCGATGGTTC 57.513 50.000 12.06 0.00 0.00 3.62
421 422 2.810650 CTTACTAAGCGCTCGATGGTT 58.189 47.619 12.06 0.00 0.00 3.67
422 423 1.536284 GCTTACTAAGCGCTCGATGGT 60.536 52.381 12.06 6.03 45.74 3.55
423 424 1.132588 GCTTACTAAGCGCTCGATGG 58.867 55.000 12.06 0.00 45.74 3.51
442 443 1.009389 AAAAGGTCGAAGCTCGCGAG 61.009 55.000 31.37 31.37 40.21 5.03
443 444 1.006571 AAAAGGTCGAAGCTCGCGA 60.007 52.632 9.26 9.26 40.21 5.87
444 445 1.130613 CAAAAGGTCGAAGCTCGCG 59.869 57.895 0.00 0.00 40.21 5.87
445 446 1.079503 ATCAAAAGGTCGAAGCTCGC 58.920 50.000 0.00 0.00 40.21 5.03
446 447 3.250744 TGTATCAAAAGGTCGAAGCTCG 58.749 45.455 0.00 0.00 42.10 5.03
447 448 3.062774 GCTGTATCAAAAGGTCGAAGCTC 59.937 47.826 0.00 0.00 0.00 4.09
448 449 3.003480 GCTGTATCAAAAGGTCGAAGCT 58.997 45.455 0.00 0.00 0.00 3.74
449 450 2.096013 GGCTGTATCAAAAGGTCGAAGC 59.904 50.000 0.00 0.00 0.00 3.86
450 451 2.678336 GGGCTGTATCAAAAGGTCGAAG 59.322 50.000 0.00 0.00 0.00 3.79
451 452 2.304761 AGGGCTGTATCAAAAGGTCGAA 59.695 45.455 0.00 0.00 0.00 3.71
452 453 1.906574 AGGGCTGTATCAAAAGGTCGA 59.093 47.619 0.00 0.00 0.00 4.20
453 454 2.403252 AGGGCTGTATCAAAAGGTCG 57.597 50.000 0.00 0.00 0.00 4.79
454 455 5.059833 CAGATAGGGCTGTATCAAAAGGTC 58.940 45.833 9.21 0.00 32.57 3.85
455 456 4.687219 GCAGATAGGGCTGTATCAAAAGGT 60.687 45.833 9.21 0.00 38.17 3.50
456 457 3.817647 GCAGATAGGGCTGTATCAAAAGG 59.182 47.826 9.21 0.00 38.17 3.11
457 458 4.454678 TGCAGATAGGGCTGTATCAAAAG 58.545 43.478 9.21 0.00 38.17 2.27
458 459 4.454678 CTGCAGATAGGGCTGTATCAAAA 58.545 43.478 8.42 0.00 38.17 2.44
459 460 3.745480 GCTGCAGATAGGGCTGTATCAAA 60.745 47.826 20.43 0.00 38.17 2.69
460 461 2.224378 GCTGCAGATAGGGCTGTATCAA 60.224 50.000 20.43 0.00 38.17 2.57
461 462 1.345741 GCTGCAGATAGGGCTGTATCA 59.654 52.381 20.43 0.00 38.17 2.15
462 463 1.345741 TGCTGCAGATAGGGCTGTATC 59.654 52.381 20.43 0.00 38.17 2.24
463 464 1.347050 CTGCTGCAGATAGGGCTGTAT 59.653 52.381 24.88 0.00 38.17 2.29
464 465 0.755079 CTGCTGCAGATAGGGCTGTA 59.245 55.000 24.88 0.00 38.17 2.74
465 466 1.525923 CTGCTGCAGATAGGGCTGT 59.474 57.895 24.88 0.00 38.17 4.40
466 467 1.227883 CCTGCTGCAGATAGGGCTG 60.228 63.158 30.10 7.52 38.91 4.85
467 468 3.117452 GCCTGCTGCAGATAGGGCT 62.117 63.158 30.10 0.00 40.77 5.19
468 469 2.594013 GCCTGCTGCAGATAGGGC 60.594 66.667 30.10 21.23 40.77 5.19
469 470 2.109517 ATCGCCTGCTGCAGATAGGG 62.110 60.000 30.10 20.36 41.33 3.53
470 471 0.949588 CATCGCCTGCTGCAGATAGG 60.950 60.000 30.10 25.18 41.33 2.57
471 472 0.033090 TCATCGCCTGCTGCAGATAG 59.967 55.000 30.10 19.27 41.33 2.08
472 473 0.683412 ATCATCGCCTGCTGCAGATA 59.317 50.000 30.10 15.04 41.33 1.98
473 474 0.885150 CATCATCGCCTGCTGCAGAT 60.885 55.000 30.10 13.72 41.33 2.90
490 491 2.436469 TTGCATGCGCTCCGACAT 60.436 55.556 14.09 0.00 39.64 3.06
495 496 1.647545 TTAGCTGTTGCATGCGCTCC 61.648 55.000 19.19 5.09 42.74 4.70
514 515 1.745087 CTACATGAGGCGGCAACATTT 59.255 47.619 13.08 11.81 0.00 2.32
516 517 0.253044 ACTACATGAGGCGGCAACAT 59.747 50.000 13.08 13.58 0.00 2.71
519 520 0.179084 GCTACTACATGAGGCGGCAA 60.179 55.000 13.08 0.00 0.00 4.52
676 681 2.115695 GGCCACCCGGGTAAAACA 59.884 61.111 29.72 0.00 39.65 2.83
743 776 0.471211 AAGGACCCTCTCAACCGTGA 60.471 55.000 0.00 0.00 0.00 4.35
749 782 3.943671 TGTCAAAAAGGACCCTCTCAA 57.056 42.857 0.00 0.00 36.97 3.02
754 787 6.556874 TGGATAAAATTGTCAAAAAGGACCCT 59.443 34.615 0.00 0.00 36.97 4.34
777 810 2.955660 TGCCAAAAAGGACTACTTGTGG 59.044 45.455 0.00 0.00 43.33 4.17
780 813 5.402398 GCTATTGCCAAAAAGGACTACTTG 58.598 41.667 0.00 0.00 39.96 3.16
783 816 3.439129 ACGCTATTGCCAAAAAGGACTAC 59.561 43.478 0.00 0.00 41.22 2.73
804 837 1.336795 CCAAAAGAACCCATGCCGAAC 60.337 52.381 0.00 0.00 0.00 3.95
807 840 0.243636 GTCCAAAAGAACCCATGCCG 59.756 55.000 0.00 0.00 0.00 5.69
1028 1061 2.620137 CCATGGGGGAGGGGGAAA 60.620 66.667 2.85 0.00 40.01 3.13
1206 1239 2.353145 CCGAATACGACGGCGAGG 60.353 66.667 22.49 8.72 43.74 4.63
1218 1251 3.541713 GAGCCGAGGAGCCCGAAT 61.542 66.667 0.00 0.00 0.00 3.34
1485 1518 3.986006 TCGGTGACAGCACGGACC 61.986 66.667 5.35 0.00 45.70 4.46
1704 1737 1.897133 TGCCCGTTGTAGAGCTCTTTA 59.103 47.619 23.84 8.61 0.00 1.85
1992 2025 2.304180 CCTATTCGCCTTCCATCCATCT 59.696 50.000 0.00 0.00 0.00 2.90
2070 2103 4.520492 GTCAAATTCACACCAATGAGGACT 59.480 41.667 0.00 0.00 41.22 3.85
2184 2217 0.246635 ACTTAGTCGCCACGCAAGAT 59.753 50.000 6.01 0.00 43.62 2.40
2307 2340 2.594592 GTCACCCTGCGGCACTTT 60.595 61.111 0.00 0.00 0.00 2.66
2695 2728 4.536065 TCAATCGCAAAGAACAACATCAC 58.464 39.130 0.00 0.00 0.00 3.06
2711 2747 8.970691 ATTAAGGAAGACAAAAACATCAATCG 57.029 30.769 0.00 0.00 0.00 3.34
2754 2790 5.676552 TCTAAACAAACTAGCTGGTTCACA 58.323 37.500 16.47 0.00 0.00 3.58
2796 2832 4.810790 TCTCTGCTACTACAAAGAGCAAC 58.189 43.478 0.00 0.00 45.15 4.17
3162 3242 8.710551 GCACTTCTCTTCAGAATCATATGTATG 58.289 37.037 1.90 0.00 38.02 2.39
3304 3393 1.064017 ACCACAGGCCTTCAAAACTCA 60.064 47.619 0.00 0.00 0.00 3.41
3409 3498 8.921670 GTTGTACAAAGAACACTTTTCATTGTT 58.078 29.630 10.51 0.00 39.84 2.83
3431 3533 9.077885 ACTGACTGAACCATTATAATTTGTTGT 57.922 29.630 12.59 7.27 0.00 3.32
3479 3581 7.390996 TCCAATAGCGTAAAATGTAAAACTGGA 59.609 33.333 0.00 0.00 0.00 3.86
3483 3585 9.221775 CTCATCCAATAGCGTAAAATGTAAAAC 57.778 33.333 0.00 0.00 0.00 2.43
3489 3591 6.138761 GCTTCTCATCCAATAGCGTAAAATG 58.861 40.000 0.00 0.00 0.00 2.32
3490 3592 5.822519 TGCTTCTCATCCAATAGCGTAAAAT 59.177 36.000 0.00 0.00 34.65 1.82
3491 3593 5.182487 TGCTTCTCATCCAATAGCGTAAAA 58.818 37.500 0.00 0.00 34.65 1.52
3492 3594 4.765273 TGCTTCTCATCCAATAGCGTAAA 58.235 39.130 0.00 0.00 34.65 2.01
3493 3595 4.400529 TGCTTCTCATCCAATAGCGTAA 57.599 40.909 0.00 0.00 34.65 3.18
3494 3596 4.607293 ATGCTTCTCATCCAATAGCGTA 57.393 40.909 0.00 0.00 34.65 4.42
3495 3597 2.988010 TGCTTCTCATCCAATAGCGT 57.012 45.000 0.00 0.00 34.65 5.07
3523 3625 6.919721 TGTTTGCACCAGATAAAAGATAACC 58.080 36.000 0.00 0.00 0.00 2.85
3545 3647 7.220030 ACAGAAGTCAGAACAGAAACATATGT 58.780 34.615 1.41 1.41 0.00 2.29
3574 3676 9.418839 TGATAACTAGGATCCATGATCAGATAG 57.581 37.037 15.82 5.95 40.50 2.08
3625 3727 1.281577 TGCAGGCACATCATGGAGTTA 59.718 47.619 0.00 0.00 0.00 2.24
3687 3789 5.009010 CACAAACTGGCTCTGATACAACTTT 59.991 40.000 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.