Multiple sequence alignment - TraesCS5D01G166100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G166100 chr5D 100.000 4188 0 0 1 4188 258262312 258258125 0.000000e+00 7734.0
1 TraesCS5D01G166100 chr5D 81.818 77 8 5 1836 1907 379614177 379614102 4.520000e-05 60.2
2 TraesCS5D01G166100 chr5B 96.883 1187 31 4 2348 3528 292491938 292490752 0.000000e+00 1982.0
3 TraesCS5D01G166100 chr5B 95.928 614 23 2 1573 2184 292493492 292492879 0.000000e+00 994.0
4 TraesCS5D01G166100 chr5B 95.062 567 22 4 881 1442 292494260 292493695 0.000000e+00 887.0
5 TraesCS5D01G166100 chr5B 85.356 478 44 14 261 713 292495118 292494642 4.900000e-129 472.0
6 TraesCS5D01G166100 chr5B 96.045 177 5 2 1434 1609 292493662 292493487 1.910000e-73 287.0
7 TraesCS5D01G166100 chr5B 89.500 200 4 1 3545 3744 292488093 292487911 1.950000e-58 237.0
8 TraesCS5D01G166100 chr5B 92.000 150 10 2 3743 3890 292487950 292487801 4.240000e-50 209.0
9 TraesCS5D01G166100 chr5B 92.857 140 10 0 4005 4144 292487802 292487663 1.970000e-48 204.0
10 TraesCS5D01G166100 chr5B 100.000 32 0 0 830 861 292494600 292494569 4.520000e-05 60.2
11 TraesCS5D01G166100 chr5A 94.635 1137 28 12 2398 3528 343050584 343051693 0.000000e+00 1731.0
12 TraesCS5D01G166100 chr5A 96.667 720 22 2 1467 2184 343048633 343049352 0.000000e+00 1195.0
13 TraesCS5D01G166100 chr5A 95.944 567 20 3 878 1442 343047798 343048363 0.000000e+00 917.0
14 TraesCS5D01G166100 chr5A 91.703 229 11 1 3524 3744 343053626 343053854 1.130000e-80 311.0
15 TraesCS5D01G166100 chr5A 92.121 165 13 0 3743 3907 343053815 343053979 2.520000e-57 233.0
16 TraesCS5D01G166100 chr5A 98.400 125 1 1 2191 2315 343050327 343050450 7.050000e-53 219.0
17 TraesCS5D01G166100 chr5A 90.625 128 9 2 3993 4120 343053983 343054107 2.590000e-37 167.0
18 TraesCS5D01G166100 chr5A 77.617 277 34 17 1653 1907 575648016 575648286 4.360000e-30 143.0
19 TraesCS5D01G166100 chr5A 96.078 51 2 0 2315 2365 343050538 343050588 2.680000e-12 84.2
20 TraesCS5D01G166100 chr5A 82.895 76 2 1 4113 4188 343054250 343054314 1.630000e-04 58.4
21 TraesCS5D01G166100 chr4A 89.655 261 22 3 1 260 505783396 505783140 1.120000e-85 327.0
22 TraesCS5D01G166100 chr4A 80.000 125 20 3 4066 4186 140767286 140767163 2.070000e-13 87.9
23 TraesCS5D01G166100 chr4A 73.077 286 45 20 1653 1910 49266037 49265756 5.810000e-09 73.1
24 TraesCS5D01G166100 chr7D 87.970 266 24 4 1 261 381698706 381698968 1.460000e-79 307.0
25 TraesCS5D01G166100 chr7D 87.454 271 24 7 1 265 365833883 365834149 1.890000e-78 303.0
26 TraesCS5D01G166100 chr7D 96.629 89 3 0 3910 3998 548668963 548669051 9.380000e-32 148.0
27 TraesCS5D01G166100 chr1B 87.970 266 23 5 1 260 482971993 482971731 5.260000e-79 305.0
28 TraesCS5D01G166100 chr1B 80.645 124 21 3 4066 4186 135242084 135241961 4.460000e-15 93.5
29 TraesCS5D01G166100 chr3A 89.583 240 20 3 28 265 430979432 430979668 2.450000e-77 300.0
30 TraesCS5D01G166100 chr3A 89.744 234 20 2 28 260 153097936 153097706 3.170000e-76 296.0
31 TraesCS5D01G166100 chr7A 87.549 257 25 4 2 254 429730136 429730389 1.470000e-74 291.0
32 TraesCS5D01G166100 chr7A 100.000 28 0 0 1880 1907 729592557 729592584 8.000000e-03 52.8
33 TraesCS5D01G166100 chr6B 86.182 275 26 9 1 268 588812845 588813114 1.910000e-73 287.0
34 TraesCS5D01G166100 chr7B 84.138 290 34 8 1 283 189229705 189229421 1.920000e-68 270.0
35 TraesCS5D01G166100 chr1D 98.864 88 1 0 3910 3997 387899504 387899591 1.560000e-34 158.0
36 TraesCS5D01G166100 chr1D 95.604 91 4 0 3909 3999 85191512 85191602 3.370000e-31 147.0
37 TraesCS5D01G166100 chr1D 74.632 272 45 15 1654 1904 396746491 396746223 9.580000e-17 99.0
38 TraesCS5D01G166100 chr4D 97.753 89 1 1 3906 3994 188711823 188711910 7.250000e-33 152.0
39 TraesCS5D01G166100 chr3D 95.699 93 4 0 3910 4002 250919268 250919176 2.610000e-32 150.0
40 TraesCS5D01G166100 chr2D 95.604 91 4 0 3907 3997 99134719 99134629 3.370000e-31 147.0
41 TraesCS5D01G166100 chr2D 93.000 100 6 1 3909 4008 7371649 7371551 1.210000e-30 145.0
42 TraesCS5D01G166100 chr4B 93.000 100 6 1 3909 4008 668163021 668162923 1.210000e-30 145.0
43 TraesCS5D01G166100 chr6A 92.079 101 5 3 3895 3994 593927252 593927350 5.650000e-29 139.0
44 TraesCS5D01G166100 chr2A 87.640 89 9 2 1820 1907 59546153 59546066 7.410000e-18 102.0
45 TraesCS5D01G166100 chr6D 100.000 28 0 0 1669 1696 460653563 460653590 8.000000e-03 52.8
46 TraesCS5D01G166100 chr6D 100.000 28 0 0 1669 1696 460653657 460653684 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G166100 chr5D 258258125 258262312 4187 True 7734.000000 7734 100.000000 1 4188 1 chr5D.!!$R1 4187
1 TraesCS5D01G166100 chr5B 292487663 292495118 7455 True 592.466667 1982 93.736778 261 4144 9 chr5B.!!$R1 3883
2 TraesCS5D01G166100 chr5A 343047798 343054314 6516 False 546.177778 1731 93.229778 878 4188 9 chr5A.!!$F2 3310

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
670 696 0.032130 ACTGCTTCGTGCGAGAAAGA 59.968 50.0 0.00 0.0 46.63 2.52 F
724 750 0.102481 GGGATATCAGACACGTGCGT 59.898 55.0 17.22 0.0 0.00 5.24 F
800 826 0.107643 TGGACGTTCATGCCTGTTCA 59.892 50.0 0.00 0.0 0.00 3.18 F
2218 3918 0.179059 ACGTGTGTCCATGAGTTGCA 60.179 50.0 0.00 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2751 1.014352 AACTCAACACACAAGACGCC 58.986 50.000 0.0 0.0 0.00 5.68 R
2218 3918 1.774110 TCCAACAACACAAGGCACAT 58.226 45.000 0.0 0.0 0.00 3.21 R
2535 4323 3.253432 GTCCACAACCAATCTTGTCTTCC 59.747 47.826 0.0 0.0 31.73 3.46 R
3753 9060 0.250945 TGCTACAACCCGGCATTCAA 60.251 50.000 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.562583 TCAAAATAAATCTCCGTAAAATTTCGG 57.437 29.630 11.15 11.15 46.93 4.30
59 60 7.980742 AAATAAATCTCCGTAAAATTTCGGC 57.019 32.000 12.28 0.00 45.44 5.54
60 61 6.937436 ATAAATCTCCGTAAAATTTCGGCT 57.063 33.333 12.28 0.00 45.44 5.52
61 62 4.877323 AATCTCCGTAAAATTTCGGCTC 57.123 40.909 12.28 0.00 45.44 4.70
62 63 3.322211 TCTCCGTAAAATTTCGGCTCA 57.678 42.857 12.28 0.00 45.44 4.26
63 64 3.869065 TCTCCGTAAAATTTCGGCTCAT 58.131 40.909 12.28 0.00 45.44 2.90
64 65 4.258543 TCTCCGTAAAATTTCGGCTCATT 58.741 39.130 12.28 0.00 45.44 2.57
65 66 4.698304 TCTCCGTAAAATTTCGGCTCATTT 59.302 37.500 12.28 0.00 45.44 2.32
66 67 4.728534 TCCGTAAAATTTCGGCTCATTTG 58.271 39.130 12.28 0.00 45.44 2.32
67 68 3.857093 CCGTAAAATTTCGGCTCATTTGG 59.143 43.478 5.49 0.00 40.28 3.28
68 69 4.380023 CCGTAAAATTTCGGCTCATTTGGA 60.380 41.667 5.49 0.00 40.28 3.53
69 70 4.793216 CGTAAAATTTCGGCTCATTTGGAG 59.207 41.667 0.00 0.00 46.93 3.86
70 71 8.273224 CCGTAAAATTTCGGCTCATTTGGAGA 62.273 42.308 5.49 0.00 45.81 3.71
71 72 9.487026 CCGTAAAATTTCGGCTCATTTGGAGAT 62.487 40.741 5.49 0.00 45.81 2.75
83 84 5.128205 TCATTTGGAGATGTGCAGAATAGG 58.872 41.667 0.00 0.00 0.00 2.57
84 85 4.574674 TTTGGAGATGTGCAGAATAGGT 57.425 40.909 0.00 0.00 0.00 3.08
85 86 5.692115 TTTGGAGATGTGCAGAATAGGTA 57.308 39.130 0.00 0.00 0.00 3.08
86 87 5.894298 TTGGAGATGTGCAGAATAGGTAT 57.106 39.130 0.00 0.00 0.00 2.73
87 88 5.474578 TGGAGATGTGCAGAATAGGTATC 57.525 43.478 0.00 0.00 0.00 2.24
88 89 5.150715 TGGAGATGTGCAGAATAGGTATCT 58.849 41.667 0.00 0.00 0.00 1.98
89 90 5.244851 TGGAGATGTGCAGAATAGGTATCTC 59.755 44.000 0.00 0.00 38.71 2.75
90 91 5.480073 GGAGATGTGCAGAATAGGTATCTCT 59.520 44.000 0.00 0.00 39.16 3.10
91 92 6.343716 AGATGTGCAGAATAGGTATCTCTG 57.656 41.667 0.00 0.00 39.69 3.35
92 93 6.073981 AGATGTGCAGAATAGGTATCTCTGA 58.926 40.000 2.57 0.00 39.15 3.27
93 94 5.521906 TGTGCAGAATAGGTATCTCTGAC 57.478 43.478 2.57 0.00 39.15 3.51
94 95 4.956075 TGTGCAGAATAGGTATCTCTGACA 59.044 41.667 2.57 2.16 39.15 3.58
95 96 5.600069 TGTGCAGAATAGGTATCTCTGACAT 59.400 40.000 2.57 0.00 39.15 3.06
96 97 6.098838 TGTGCAGAATAGGTATCTCTGACATT 59.901 38.462 2.57 0.00 39.15 2.71
97 98 6.423302 GTGCAGAATAGGTATCTCTGACATTG 59.577 42.308 2.57 0.00 39.15 2.82
98 99 5.931146 GCAGAATAGGTATCTCTGACATTGG 59.069 44.000 2.57 0.00 39.15 3.16
99 100 6.463614 GCAGAATAGGTATCTCTGACATTGGT 60.464 42.308 2.57 0.00 39.15 3.67
100 101 7.504403 CAGAATAGGTATCTCTGACATTGGTT 58.496 38.462 0.00 0.00 39.15 3.67
101 102 7.989741 CAGAATAGGTATCTCTGACATTGGTTT 59.010 37.037 0.00 0.00 39.15 3.27
102 103 8.552296 AGAATAGGTATCTCTGACATTGGTTTT 58.448 33.333 0.00 0.00 0.00 2.43
103 104 9.178758 GAATAGGTATCTCTGACATTGGTTTTT 57.821 33.333 0.00 0.00 0.00 1.94
124 125 2.496899 TTCAGGTCCAGAATTCCAGC 57.503 50.000 0.65 0.00 0.00 4.85
125 126 1.661463 TCAGGTCCAGAATTCCAGCT 58.339 50.000 0.65 0.00 0.00 4.24
126 127 1.280133 TCAGGTCCAGAATTCCAGCTG 59.720 52.381 6.78 6.78 36.01 4.24
127 128 0.034670 AGGTCCAGAATTCCAGCTGC 60.035 55.000 8.66 0.00 0.00 5.25
128 129 1.034292 GGTCCAGAATTCCAGCTGCC 61.034 60.000 8.66 0.00 0.00 4.85
129 130 1.078214 TCCAGAATTCCAGCTGCCG 60.078 57.895 8.66 0.00 0.00 5.69
130 131 2.117156 CCAGAATTCCAGCTGCCGG 61.117 63.158 8.66 0.00 0.00 6.13
131 132 1.377725 CAGAATTCCAGCTGCCGGT 60.378 57.895 8.66 0.00 0.00 5.28
132 133 0.107703 CAGAATTCCAGCTGCCGGTA 60.108 55.000 8.66 0.00 0.00 4.02
133 134 0.618458 AGAATTCCAGCTGCCGGTAA 59.382 50.000 8.66 0.00 0.00 2.85
134 135 1.212935 AGAATTCCAGCTGCCGGTAAT 59.787 47.619 8.66 0.00 0.00 1.89
135 136 2.024414 GAATTCCAGCTGCCGGTAATT 58.976 47.619 8.66 8.33 0.00 1.40
136 137 2.143876 ATTCCAGCTGCCGGTAATTT 57.856 45.000 8.66 0.00 0.00 1.82
137 138 1.459450 TTCCAGCTGCCGGTAATTTC 58.541 50.000 8.66 0.00 0.00 2.17
138 139 0.618458 TCCAGCTGCCGGTAATTTCT 59.382 50.000 8.66 0.00 0.00 2.52
139 140 1.017387 CCAGCTGCCGGTAATTTCTC 58.983 55.000 8.66 0.00 0.00 2.87
140 141 1.407437 CCAGCTGCCGGTAATTTCTCT 60.407 52.381 8.66 0.00 0.00 3.10
141 142 1.936547 CAGCTGCCGGTAATTTCTCTC 59.063 52.381 0.00 0.00 0.00 3.20
142 143 1.834263 AGCTGCCGGTAATTTCTCTCT 59.166 47.619 1.90 0.00 0.00 3.10
143 144 2.237392 AGCTGCCGGTAATTTCTCTCTT 59.763 45.455 1.90 0.00 0.00 2.85
144 145 3.010420 GCTGCCGGTAATTTCTCTCTTT 58.990 45.455 1.90 0.00 0.00 2.52
145 146 3.181506 GCTGCCGGTAATTTCTCTCTTTG 60.182 47.826 1.90 0.00 0.00 2.77
146 147 4.003648 CTGCCGGTAATTTCTCTCTTTGT 58.996 43.478 1.90 0.00 0.00 2.83
147 148 3.751175 TGCCGGTAATTTCTCTCTTTGTG 59.249 43.478 1.90 0.00 0.00 3.33
148 149 3.751698 GCCGGTAATTTCTCTCTTTGTGT 59.248 43.478 1.90 0.00 0.00 3.72
149 150 4.933400 GCCGGTAATTTCTCTCTTTGTGTA 59.067 41.667 1.90 0.00 0.00 2.90
150 151 5.410439 GCCGGTAATTTCTCTCTTTGTGTAA 59.590 40.000 1.90 0.00 0.00 2.41
151 152 6.072893 GCCGGTAATTTCTCTCTTTGTGTAAA 60.073 38.462 1.90 0.00 0.00 2.01
152 153 7.295930 CCGGTAATTTCTCTCTTTGTGTAAAC 58.704 38.462 0.00 0.00 0.00 2.01
153 154 7.295930 CGGTAATTTCTCTCTTTGTGTAAACC 58.704 38.462 0.00 0.00 0.00 3.27
154 155 7.172703 CGGTAATTTCTCTCTTTGTGTAAACCT 59.827 37.037 0.00 0.00 0.00 3.50
155 156 8.847196 GGTAATTTCTCTCTTTGTGTAAACCTT 58.153 33.333 0.00 0.00 0.00 3.50
158 159 8.974060 ATTTCTCTCTTTGTGTAAACCTTACA 57.026 30.769 0.00 0.00 0.00 2.41
159 160 8.974060 TTTCTCTCTTTGTGTAAACCTTACAT 57.026 30.769 2.79 0.00 0.00 2.29
176 177 8.910351 ACCTTACATATTATGAGAGAAAAGCC 57.090 34.615 10.62 0.00 0.00 4.35
177 178 8.494433 ACCTTACATATTATGAGAGAAAAGCCA 58.506 33.333 10.62 0.00 0.00 4.75
178 179 9.512588 CCTTACATATTATGAGAGAAAAGCCAT 57.487 33.333 10.62 0.00 0.00 4.40
189 190 8.723942 TGAGAGAAAAGCCATTAGAATTACTC 57.276 34.615 0.00 0.00 0.00 2.59
190 191 7.770897 TGAGAGAAAAGCCATTAGAATTACTCC 59.229 37.037 0.00 0.00 0.00 3.85
191 192 7.633789 AGAGAAAAGCCATTAGAATTACTCCA 58.366 34.615 0.00 0.00 0.00 3.86
192 193 8.277918 AGAGAAAAGCCATTAGAATTACTCCAT 58.722 33.333 0.00 0.00 0.00 3.41
193 194 9.561069 GAGAAAAGCCATTAGAATTACTCCATA 57.439 33.333 0.00 0.00 0.00 2.74
194 195 9.920946 AGAAAAGCCATTAGAATTACTCCATAA 57.079 29.630 0.00 0.00 0.00 1.90
197 198 9.700831 AAAGCCATTAGAATTACTCCATAAAGT 57.299 29.630 0.00 0.00 0.00 2.66
198 199 8.682936 AGCCATTAGAATTACTCCATAAAGTG 57.317 34.615 0.00 0.00 0.00 3.16
199 200 8.275040 AGCCATTAGAATTACTCCATAAAGTGT 58.725 33.333 0.00 0.00 0.00 3.55
200 201 8.903820 GCCATTAGAATTACTCCATAAAGTGTT 58.096 33.333 0.00 0.00 0.00 3.32
295 296 2.825836 GCTTGAGGCCATGACGGG 60.826 66.667 5.01 0.00 34.06 5.28
316 317 3.002656 GGTGTGATGCATACAGGAAATCG 59.997 47.826 0.00 0.00 0.00 3.34
348 349 0.690192 TGATGTGGATGTTGTCGGGT 59.310 50.000 0.00 0.00 0.00 5.28
349 350 1.086696 GATGTGGATGTTGTCGGGTG 58.913 55.000 0.00 0.00 0.00 4.61
351 352 0.533978 TGTGGATGTTGTCGGGTGTG 60.534 55.000 0.00 0.00 0.00 3.82
372 373 3.317711 TGCCCATGTTTAAATATCAGGCG 59.682 43.478 21.13 7.62 40.80 5.52
404 405 1.591504 AAGCGGCGGGGTGTTTAATG 61.592 55.000 9.78 0.00 0.00 1.90
409 410 0.674269 GCGGGGTGTTTAATGTCGGA 60.674 55.000 0.00 0.00 0.00 4.55
413 414 0.445043 GGTGTTTAATGTCGGACGGC 59.555 55.000 3.34 0.00 0.00 5.68
431 443 0.248054 GCCGTATGTCGTTTGCATGG 60.248 55.000 0.00 0.00 37.94 3.66
446 458 3.435525 ATGGGGGCGCCACAATAGG 62.436 63.158 33.37 0.00 41.83 2.57
452 464 0.679960 GGCGCCACAATAGGTTCCTT 60.680 55.000 24.80 0.00 0.00 3.36
460 472 2.158385 ACAATAGGTTCCTTGGCAACCA 60.158 45.455 8.68 0.00 45.20 3.67
461 473 3.099141 CAATAGGTTCCTTGGCAACCAT 58.901 45.455 8.68 0.00 45.20 3.55
482 494 2.916934 TGCTTGGTTAATAGTGGGAGGT 59.083 45.455 0.00 0.00 0.00 3.85
486 498 2.841881 TGGTTAATAGTGGGAGGTGGAC 59.158 50.000 0.00 0.00 0.00 4.02
491 503 2.084089 TAGTGGGAGGTGGACGGACA 62.084 60.000 0.00 0.00 0.00 4.02
508 520 2.414559 GGACAGGTGTCATTTGAATGCG 60.415 50.000 12.09 0.00 46.47 4.73
526 538 1.086067 CGGAGAGAATGTGCGTGCAT 61.086 55.000 0.00 0.00 38.69 3.96
531 543 2.046411 AATGTGCGTGCATCGGGA 60.046 55.556 0.00 0.00 40.26 5.14
549 561 1.485032 GACGAAACGCGGACACACTT 61.485 55.000 12.47 0.00 46.49 3.16
550 562 1.200839 CGAAACGCGGACACACTTC 59.799 57.895 12.47 0.51 36.03 3.01
563 575 1.374252 CACTTCCGGTTAGCACGCT 60.374 57.895 0.00 0.00 0.00 5.07
574 586 2.505557 GCACGCTGCTTCAATGCC 60.506 61.111 0.00 0.00 40.96 4.40
583 595 2.751436 TTCAATGCCGGCTCCAGC 60.751 61.111 29.70 0.00 41.14 4.85
601 613 1.512310 CGAGAGTTCGTGTCCGCTC 60.512 63.158 0.00 0.00 41.84 5.03
605 617 1.085091 GAGTTCGTGTCCGCTCTAGA 58.915 55.000 0.00 0.00 0.00 2.43
606 618 1.062880 GAGTTCGTGTCCGCTCTAGAG 59.937 57.143 15.85 15.85 0.00 2.43
643 669 1.226379 GCGTTGACCGGCATGAATG 60.226 57.895 0.00 0.00 36.94 2.67
654 680 1.202177 GGCATGAATGTACGGCAACTG 60.202 52.381 0.00 0.00 0.00 3.16
658 684 1.804151 TGAATGTACGGCAACTGCTTC 59.196 47.619 1.06 0.00 41.70 3.86
660 686 0.320421 ATGTACGGCAACTGCTTCGT 60.320 50.000 10.16 10.16 40.77 3.85
662 688 2.314647 TACGGCAACTGCTTCGTGC 61.315 57.895 13.85 0.00 38.84 5.34
670 696 0.032130 ACTGCTTCGTGCGAGAAAGA 59.968 50.000 0.00 0.00 46.63 2.52
673 699 1.067565 TGCTTCGTGCGAGAAAGATCT 60.068 47.619 0.00 0.00 46.63 2.75
677 703 1.544246 TCGTGCGAGAAAGATCTTGGA 59.456 47.619 9.17 0.00 37.52 3.53
680 706 1.544246 TGCGAGAAAGATCTTGGACGA 59.456 47.619 22.95 11.46 37.52 4.20
706 732 0.609957 GGGTTTTTAGGTGGGACCGG 60.610 60.000 0.00 0.00 44.90 5.28
713 739 0.861854 TAGGTGGGACCGGGATATCA 59.138 55.000 6.32 0.00 44.90 2.15
714 740 0.471971 AGGTGGGACCGGGATATCAG 60.472 60.000 6.32 0.00 44.90 2.90
715 741 0.471211 GGTGGGACCGGGATATCAGA 60.471 60.000 6.32 0.00 0.00 3.27
716 742 0.680061 GTGGGACCGGGATATCAGAC 59.320 60.000 6.32 0.00 0.00 3.51
717 743 0.263468 TGGGACCGGGATATCAGACA 59.737 55.000 6.32 0.00 0.00 3.41
718 744 0.680061 GGGACCGGGATATCAGACAC 59.320 60.000 6.32 0.00 0.00 3.67
719 745 0.314302 GGACCGGGATATCAGACACG 59.686 60.000 6.32 1.08 0.00 4.49
720 746 1.030457 GACCGGGATATCAGACACGT 58.970 55.000 6.32 0.00 0.00 4.49
721 747 0.744874 ACCGGGATATCAGACACGTG 59.255 55.000 15.48 15.48 0.00 4.49
722 748 0.597637 CCGGGATATCAGACACGTGC 60.598 60.000 17.22 8.74 0.00 5.34
723 749 0.934901 CGGGATATCAGACACGTGCG 60.935 60.000 17.22 4.51 0.00 5.34
724 750 0.102481 GGGATATCAGACACGTGCGT 59.898 55.000 17.22 0.00 0.00 5.24
733 759 3.951332 CACGTGCGTGGAAGTGAT 58.049 55.556 15.98 0.00 42.00 3.06
734 760 1.781555 CACGTGCGTGGAAGTGATC 59.218 57.895 15.98 0.00 42.00 2.92
735 761 0.667487 CACGTGCGTGGAAGTGATCT 60.667 55.000 15.98 0.00 42.00 2.75
736 762 0.667487 ACGTGCGTGGAAGTGATCTG 60.667 55.000 0.00 0.00 0.00 2.90
737 763 1.354337 CGTGCGTGGAAGTGATCTGG 61.354 60.000 0.00 0.00 0.00 3.86
738 764 1.021390 GTGCGTGGAAGTGATCTGGG 61.021 60.000 0.00 0.00 0.00 4.45
739 765 2.109126 GCGTGGAAGTGATCTGGGC 61.109 63.158 0.00 0.00 0.00 5.36
740 766 1.296392 CGTGGAAGTGATCTGGGCA 59.704 57.895 0.00 0.00 0.00 5.36
741 767 1.021390 CGTGGAAGTGATCTGGGCAC 61.021 60.000 0.00 0.00 36.53 5.01
754 780 3.051210 GGCACCTGCAAAACCTCC 58.949 61.111 0.00 0.00 44.36 4.30
755 781 2.574018 GGCACCTGCAAAACCTCCC 61.574 63.158 0.00 0.00 44.36 4.30
756 782 1.832167 GCACCTGCAAAACCTCCCA 60.832 57.895 0.00 0.00 41.59 4.37
773 799 4.952335 CCTCCCAGTTTGCTTCTGATTTAT 59.048 41.667 5.27 0.00 35.20 1.40
780 806 7.754027 CCAGTTTGCTTCTGATTTATGAGAAAG 59.246 37.037 5.27 0.00 35.20 2.62
781 807 8.295288 CAGTTTGCTTCTGATTTATGAGAAAGT 58.705 33.333 0.00 0.00 35.20 2.66
791 817 6.878923 TGATTTATGAGAAAGTGGACGTTCAT 59.121 34.615 0.00 0.00 36.92 2.57
792 818 6.480524 TTTATGAGAAAGTGGACGTTCATG 57.519 37.500 0.00 0.00 36.92 3.07
797 823 0.108585 AAGTGGACGTTCATGCCTGT 59.891 50.000 0.00 0.00 0.00 4.00
798 824 0.108585 AGTGGACGTTCATGCCTGTT 59.891 50.000 0.00 0.00 0.00 3.16
799 825 0.517316 GTGGACGTTCATGCCTGTTC 59.483 55.000 0.00 0.00 0.00 3.18
800 826 0.107643 TGGACGTTCATGCCTGTTCA 59.892 50.000 0.00 0.00 0.00 3.18
801 827 1.271325 TGGACGTTCATGCCTGTTCAT 60.271 47.619 0.00 0.00 0.00 2.57
802 828 1.131126 GGACGTTCATGCCTGTTCATG 59.869 52.381 0.00 0.00 43.84 3.07
808 834 3.369242 TCATGCCTGTTCATGAATGGA 57.631 42.857 25.27 14.16 46.84 3.41
809 835 3.905968 TCATGCCTGTTCATGAATGGAT 58.094 40.909 25.27 15.44 46.84 3.41
810 836 3.634910 TCATGCCTGTTCATGAATGGATG 59.365 43.478 25.27 22.91 46.84 3.51
811 837 2.380941 TGCCTGTTCATGAATGGATGG 58.619 47.619 25.27 17.25 0.00 3.51
812 838 2.025131 TGCCTGTTCATGAATGGATGGA 60.025 45.455 25.27 8.43 0.00 3.41
813 839 3.228453 GCCTGTTCATGAATGGATGGAT 58.772 45.455 25.27 0.00 0.00 3.41
814 840 3.640029 GCCTGTTCATGAATGGATGGATT 59.360 43.478 25.27 0.00 0.00 3.01
815 841 4.100498 GCCTGTTCATGAATGGATGGATTT 59.900 41.667 25.27 0.00 0.00 2.17
816 842 5.302568 GCCTGTTCATGAATGGATGGATTTA 59.697 40.000 25.27 0.00 0.00 1.40
817 843 6.014840 GCCTGTTCATGAATGGATGGATTTAT 60.015 38.462 25.27 0.00 0.00 1.40
818 844 7.472381 GCCTGTTCATGAATGGATGGATTTATT 60.472 37.037 25.27 0.00 0.00 1.40
819 845 8.426489 CCTGTTCATGAATGGATGGATTTATTT 58.574 33.333 19.62 0.00 0.00 1.40
820 846 9.826574 CTGTTCATGAATGGATGGATTTATTTT 57.173 29.630 12.12 0.00 0.00 1.82
861 887 3.490759 GTGCCGTGCTGGATGACG 61.491 66.667 0.00 0.00 42.00 4.35
865 891 3.474806 CGTGCTGGATGACGGAAC 58.525 61.111 0.00 0.00 31.84 3.62
867 893 0.948623 CGTGCTGGATGACGGAACAA 60.949 55.000 0.00 0.00 33.08 2.83
868 894 0.798776 GTGCTGGATGACGGAACAAG 59.201 55.000 0.00 0.00 33.79 3.16
869 895 0.396435 TGCTGGATGACGGAACAAGT 59.604 50.000 0.00 0.00 0.00 3.16
871 897 1.464997 GCTGGATGACGGAACAAGTTC 59.535 52.381 4.39 4.39 38.80 3.01
872 898 1.726791 CTGGATGACGGAACAAGTTCG 59.273 52.381 6.84 5.35 40.37 3.95
873 899 1.341852 TGGATGACGGAACAAGTTCGA 59.658 47.619 6.84 0.00 40.37 3.71
874 900 2.224090 TGGATGACGGAACAAGTTCGAA 60.224 45.455 6.84 0.00 40.37 3.71
875 901 2.157085 GGATGACGGAACAAGTTCGAAC 59.843 50.000 20.71 20.71 40.37 3.95
876 902 1.574134 TGACGGAACAAGTTCGAACC 58.426 50.000 24.22 8.71 40.37 3.62
878 904 1.791204 GACGGAACAAGTTCGAACCTC 59.209 52.381 24.22 14.98 40.37 3.85
879 905 0.782384 CGGAACAAGTTCGAACCTCG 59.218 55.000 24.22 15.02 40.37 4.63
920 1234 3.055094 GGTTTAAGATGCCCTGAGTCTCA 60.055 47.826 1.78 1.78 0.00 3.27
947 1261 0.327576 AAGCCCAGGCCCATACTACT 60.328 55.000 4.70 0.00 43.17 2.57
966 1280 3.490348 ACTGATCTGTTGAAACCCCAAG 58.510 45.455 0.00 0.00 0.00 3.61
967 1281 2.821969 CTGATCTGTTGAAACCCCAAGG 59.178 50.000 0.00 0.00 40.04 3.61
1091 1406 1.078848 CTGCTGCACTCTACACCCC 60.079 63.158 0.00 0.00 0.00 4.95
1166 1481 2.284995 GGAGGAGCAGTGGGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
1236 1551 3.511146 TCAAAAACATCCTCCATTCCAGC 59.489 43.478 0.00 0.00 0.00 4.85
1272 1587 3.616956 TTCTCCTCTCGTTGCAATGAT 57.383 42.857 21.24 0.00 0.00 2.45
1423 1738 6.780706 TTCCTGAGAAATCGTCAAACTAAC 57.219 37.500 0.00 0.00 0.00 2.34
1907 2505 1.153529 CGCACGGGCACATACCTAA 60.154 57.895 11.77 0.00 41.24 2.69
2086 2684 6.325596 TCGATTTTTGTTTGACAATCACACA 58.674 32.000 0.00 0.00 38.00 3.72
2088 2686 6.253298 CGATTTTTGTTTGACAATCACACACT 59.747 34.615 0.00 0.00 36.87 3.55
2100 2698 1.006805 ACACACTCTGAGACAGCGC 60.007 57.895 12.44 0.00 0.00 5.92
2153 2751 5.163499 GCTTTATCCTCCCGTAGATAGATGG 60.163 48.000 0.00 0.00 0.00 3.51
2218 3918 0.179059 ACGTGTGTCCATGAGTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
2344 4132 0.599558 GGTGCAGCTGATGAAAAGCA 59.400 50.000 20.43 1.69 43.37 3.91
2739 4533 2.545526 CAGAACCTTAGTGTGTGCAGTG 59.454 50.000 0.00 0.00 0.00 3.66
2807 4601 3.249091 CAGTCTCGAGTCTCAACCATTG 58.751 50.000 13.13 0.00 0.00 2.82
2864 4658 7.114754 TCTGTTGAGGCTCAATCTTGATAATT 58.885 34.615 30.70 0.00 38.79 1.40
2890 4684 4.761235 AGTTCACATTGCTCTGAACATG 57.239 40.909 16.42 0.00 45.90 3.21
2927 4721 6.925718 TGTGAGAGTAATCTTTTCACTGTGAG 59.074 38.462 10.77 0.00 38.35 3.51
2934 4728 4.008074 TCTTTTCACTGTGAGCCTAAGG 57.992 45.455 10.77 3.46 0.00 2.69
2951 4745 9.120538 GAGCCTAAGGATATGTAAATTTTGTGA 57.879 33.333 0.00 0.00 0.00 3.58
3049 4843 5.710099 CCTGTATGTGGTTAGAACAAATGGT 59.290 40.000 0.00 0.00 0.00 3.55
3210 5004 9.338622 GTAGAAACAACCTATATAATGTTGCCT 57.661 33.333 18.14 15.44 42.33 4.75
3262 5056 5.755409 TTTGGTCCTTCTGCTTACTATCA 57.245 39.130 0.00 0.00 0.00 2.15
3481 5275 7.604657 TTCATGTGGGGTTAACTGTTAAAAT 57.395 32.000 14.10 0.81 0.00 1.82
3536 8835 2.250924 CTGCCAAATTTCCTCCACCTT 58.749 47.619 0.00 0.00 0.00 3.50
3620 8919 0.108709 CCAATGAACCATGGTTGCCG 60.109 55.000 34.47 18.29 38.60 5.69
3628 8927 1.647545 CCATGGTTGCCGCTGTGTAG 61.648 60.000 2.57 0.00 0.00 2.74
3632 8931 0.882927 GGTTGCCGCTGTGTAGTTGA 60.883 55.000 0.00 0.00 0.00 3.18
3676 8975 0.391661 AGCTCGCCATCGTCAACAAT 60.392 50.000 0.00 0.00 36.96 2.71
3719 9026 4.523943 AGCACACTTGGCATCTTTATTTCA 59.476 37.500 0.00 0.00 0.00 2.69
3720 9027 5.186409 AGCACACTTGGCATCTTTATTTCAT 59.814 36.000 0.00 0.00 0.00 2.57
3721 9028 5.290158 GCACACTTGGCATCTTTATTTCATG 59.710 40.000 0.00 0.00 0.00 3.07
3722 9029 5.290158 CACACTTGGCATCTTTATTTCATGC 59.710 40.000 0.00 0.00 41.93 4.06
3726 9033 3.017265 GCATCTTTATTTCATGCCGGG 57.983 47.619 2.18 0.00 37.54 5.73
3727 9034 2.362077 GCATCTTTATTTCATGCCGGGT 59.638 45.455 2.18 0.00 37.54 5.28
3728 9035 3.181476 GCATCTTTATTTCATGCCGGGTT 60.181 43.478 2.18 0.00 37.54 4.11
3729 9036 4.362279 CATCTTTATTTCATGCCGGGTTG 58.638 43.478 2.18 0.00 0.00 3.77
3730 9037 3.426615 TCTTTATTTCATGCCGGGTTGT 58.573 40.909 2.18 0.00 0.00 3.32
3731 9038 3.192422 TCTTTATTTCATGCCGGGTTGTG 59.808 43.478 2.18 0.00 0.00 3.33
3732 9039 1.468985 TATTTCATGCCGGGTTGTGG 58.531 50.000 2.18 0.00 0.00 4.17
3739 9046 3.211288 CCGGGTTGTGGCACAAAA 58.789 55.556 32.60 11.54 44.16 2.44
3740 9047 1.745264 CCGGGTTGTGGCACAAAAT 59.255 52.632 32.60 0.00 44.16 1.82
3741 9048 0.319469 CCGGGTTGTGGCACAAAATC 60.319 55.000 32.60 23.19 44.16 2.17
3742 9049 0.673437 CGGGTTGTGGCACAAAATCT 59.327 50.000 32.60 0.00 44.16 2.40
3743 9050 1.602668 CGGGTTGTGGCACAAAATCTG 60.603 52.381 32.60 23.82 44.16 2.90
3744 9051 1.270252 GGGTTGTGGCACAAAATCTGG 60.270 52.381 32.60 0.00 44.16 3.86
3745 9052 1.501169 GTTGTGGCACAAAATCTGGC 58.499 50.000 32.60 15.84 44.16 4.85
3746 9053 1.117994 TTGTGGCACAAAATCTGGCA 58.882 45.000 29.45 4.57 44.16 4.92
3747 9054 1.340088 TGTGGCACAAAATCTGGCAT 58.660 45.000 19.74 0.00 45.05 4.40
3748 9055 1.273048 TGTGGCACAAAATCTGGCATC 59.727 47.619 19.74 0.00 45.05 3.91
3749 9056 1.547372 GTGGCACAAAATCTGGCATCT 59.453 47.619 13.86 0.00 45.05 2.90
3750 9057 2.028748 GTGGCACAAAATCTGGCATCTT 60.029 45.455 13.86 0.00 45.05 2.40
3751 9058 2.633967 TGGCACAAAATCTGGCATCTTT 59.366 40.909 0.00 0.00 39.14 2.52
3752 9059 3.831333 TGGCACAAAATCTGGCATCTTTA 59.169 39.130 0.00 0.00 39.14 1.85
3753 9060 4.467082 TGGCACAAAATCTGGCATCTTTAT 59.533 37.500 0.00 0.00 39.14 1.40
3754 9061 5.046448 TGGCACAAAATCTGGCATCTTTATT 60.046 36.000 0.00 0.00 39.14 1.40
3755 9062 5.292589 GGCACAAAATCTGGCATCTTTATTG 59.707 40.000 0.00 0.00 34.38 1.90
3756 9063 6.101332 GCACAAAATCTGGCATCTTTATTGA 58.899 36.000 0.00 0.00 0.00 2.57
3809 9116 4.590850 AAAAGCATCAGGGAGAAACAAC 57.409 40.909 0.00 0.00 0.00 3.32
3841 9148 7.041780 ACACACTAGCAATAGTTGAGACAAAAG 60.042 37.037 0.00 0.00 0.00 2.27
3842 9149 6.073003 ACACTAGCAATAGTTGAGACAAAAGC 60.073 38.462 0.00 0.00 0.00 3.51
3907 9214 4.607024 CGGGTGACGCAAAACTTG 57.393 55.556 0.00 0.00 34.82 3.16
3909 9216 0.591170 CGGGTGACGCAAAACTTGAT 59.409 50.000 0.00 0.00 34.82 2.57
3910 9217 1.801771 CGGGTGACGCAAAACTTGATA 59.198 47.619 0.00 0.00 34.82 2.15
3911 9218 2.412325 CGGGTGACGCAAAACTTGATAC 60.412 50.000 0.00 0.00 34.82 2.24
3912 9219 2.812011 GGGTGACGCAAAACTTGATACT 59.188 45.455 0.00 0.00 0.00 2.12
3913 9220 3.120304 GGGTGACGCAAAACTTGATACTC 60.120 47.826 0.00 0.00 0.00 2.59
3914 9221 3.120304 GGTGACGCAAAACTTGATACTCC 60.120 47.826 0.00 0.00 0.00 3.85
3915 9222 3.071479 TGACGCAAAACTTGATACTCCC 58.929 45.455 0.00 0.00 0.00 4.30
3916 9223 3.244422 TGACGCAAAACTTGATACTCCCT 60.244 43.478 0.00 0.00 0.00 4.20
3917 9224 3.751518 ACGCAAAACTTGATACTCCCTT 58.248 40.909 0.00 0.00 0.00 3.95
3918 9225 3.751698 ACGCAAAACTTGATACTCCCTTC 59.248 43.478 0.00 0.00 0.00 3.46
3919 9226 3.751175 CGCAAAACTTGATACTCCCTTCA 59.249 43.478 0.00 0.00 0.00 3.02
3920 9227 4.396166 CGCAAAACTTGATACTCCCTTCAT 59.604 41.667 0.00 0.00 0.00 2.57
3921 9228 5.584649 CGCAAAACTTGATACTCCCTTCATA 59.415 40.000 0.00 0.00 0.00 2.15
3922 9229 6.093495 CGCAAAACTTGATACTCCCTTCATAA 59.907 38.462 0.00 0.00 0.00 1.90
3923 9230 7.361713 CGCAAAACTTGATACTCCCTTCATAAA 60.362 37.037 0.00 0.00 0.00 1.40
3924 9231 7.755373 GCAAAACTTGATACTCCCTTCATAAAC 59.245 37.037 0.00 0.00 0.00 2.01
3925 9232 9.014297 CAAAACTTGATACTCCCTTCATAAACT 57.986 33.333 0.00 0.00 0.00 2.66
3937 9244 9.360093 CTCCCTTCATAAACTAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
3938 9245 8.867097 TCCCTTCATAAACTAATATAAGAGCGT 58.133 33.333 0.00 0.00 0.00 5.07
3939 9246 9.490379 CCCTTCATAAACTAATATAAGAGCGTT 57.510 33.333 0.00 0.00 0.00 4.84
3955 9262 7.870588 AAGAGCGTTTAGAACACTACTTTAG 57.129 36.000 0.00 0.00 0.00 1.85
3956 9263 6.979465 AGAGCGTTTAGAACACTACTTTAGT 58.021 36.000 0.00 0.00 40.28 2.24
3957 9264 8.103948 AGAGCGTTTAGAACACTACTTTAGTA 57.896 34.615 0.00 0.00 37.23 1.82
3958 9265 8.571336 AGAGCGTTTAGAACACTACTTTAGTAA 58.429 33.333 0.00 0.00 37.23 2.24
3959 9266 9.351570 GAGCGTTTAGAACACTACTTTAGTAAT 57.648 33.333 0.00 0.00 37.23 1.89
3960 9267 9.351570 AGCGTTTAGAACACTACTTTAGTAATC 57.648 33.333 0.00 0.00 37.23 1.75
3961 9268 9.351570 GCGTTTAGAACACTACTTTAGTAATCT 57.648 33.333 5.76 5.76 37.23 2.40
3990 9297 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
4050 9357 8.205512 TGGTCGTAGCAAGAATAATTACCATAA 58.794 33.333 0.00 0.00 0.00 1.90
4159 9616 8.712341 AAATTTGATTTTAGAAATTTGCGTGC 57.288 26.923 0.00 0.00 39.28 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.728534 TCCAAATGAGCCGAAATTTTACG 58.271 39.130 0.00 0.00 0.00 3.18
47 48 5.949735 TCTCCAAATGAGCCGAAATTTTAC 58.050 37.500 0.00 0.00 41.18 2.01
48 49 6.152661 ACATCTCCAAATGAGCCGAAATTTTA 59.847 34.615 0.00 0.00 41.18 1.52
49 50 5.047092 ACATCTCCAAATGAGCCGAAATTTT 60.047 36.000 0.00 0.00 41.18 1.82
50 51 4.463891 ACATCTCCAAATGAGCCGAAATTT 59.536 37.500 0.00 0.00 41.18 1.82
51 52 4.019174 ACATCTCCAAATGAGCCGAAATT 58.981 39.130 0.00 0.00 41.18 1.82
52 53 3.379372 CACATCTCCAAATGAGCCGAAAT 59.621 43.478 0.00 0.00 41.18 2.17
53 54 2.749076 CACATCTCCAAATGAGCCGAAA 59.251 45.455 0.00 0.00 41.18 3.46
54 55 2.358957 CACATCTCCAAATGAGCCGAA 58.641 47.619 0.00 0.00 41.18 4.30
55 56 2.013563 GCACATCTCCAAATGAGCCGA 61.014 52.381 0.00 0.00 41.18 5.54
56 57 0.379669 GCACATCTCCAAATGAGCCG 59.620 55.000 0.00 0.00 41.18 5.52
57 58 1.404391 CTGCACATCTCCAAATGAGCC 59.596 52.381 4.30 0.00 40.99 4.70
58 59 2.362736 TCTGCACATCTCCAAATGAGC 58.637 47.619 0.24 0.24 41.73 4.26
59 60 5.238868 CCTATTCTGCACATCTCCAAATGAG 59.761 44.000 0.00 0.00 42.90 2.90
60 61 5.128205 CCTATTCTGCACATCTCCAAATGA 58.872 41.667 0.00 0.00 0.00 2.57
61 62 4.885907 ACCTATTCTGCACATCTCCAAATG 59.114 41.667 0.00 0.00 0.00 2.32
62 63 5.121380 ACCTATTCTGCACATCTCCAAAT 57.879 39.130 0.00 0.00 0.00 2.32
63 64 4.574674 ACCTATTCTGCACATCTCCAAA 57.425 40.909 0.00 0.00 0.00 3.28
64 65 5.604231 AGATACCTATTCTGCACATCTCCAA 59.396 40.000 0.00 0.00 0.00 3.53
65 66 5.150715 AGATACCTATTCTGCACATCTCCA 58.849 41.667 0.00 0.00 0.00 3.86
66 67 5.480073 AGAGATACCTATTCTGCACATCTCC 59.520 44.000 0.00 0.00 38.33 3.71
67 68 6.208402 TCAGAGATACCTATTCTGCACATCTC 59.792 42.308 0.00 0.00 38.52 2.75
68 69 6.015519 GTCAGAGATACCTATTCTGCACATCT 60.016 42.308 0.00 0.00 38.52 2.90
69 70 6.155827 GTCAGAGATACCTATTCTGCACATC 58.844 44.000 0.00 0.00 38.52 3.06
70 71 5.600069 TGTCAGAGATACCTATTCTGCACAT 59.400 40.000 0.00 0.00 38.52 3.21
71 72 4.956075 TGTCAGAGATACCTATTCTGCACA 59.044 41.667 0.00 0.00 38.52 4.57
72 73 5.521906 TGTCAGAGATACCTATTCTGCAC 57.478 43.478 0.00 0.00 38.52 4.57
73 74 6.463472 CCAATGTCAGAGATACCTATTCTGCA 60.463 42.308 0.00 0.00 38.52 4.41
74 75 5.931146 CCAATGTCAGAGATACCTATTCTGC 59.069 44.000 0.00 0.00 38.52 4.26
75 76 7.060383 ACCAATGTCAGAGATACCTATTCTG 57.940 40.000 0.00 0.00 39.69 3.02
76 77 7.682787 AACCAATGTCAGAGATACCTATTCT 57.317 36.000 0.00 0.00 0.00 2.40
77 78 8.738645 AAAACCAATGTCAGAGATACCTATTC 57.261 34.615 0.00 0.00 0.00 1.75
102 103 3.573967 GCTGGAATTCTGGACCTGAAAAA 59.426 43.478 16.75 3.79 0.00 1.94
103 104 3.157087 GCTGGAATTCTGGACCTGAAAA 58.843 45.455 16.75 0.00 0.00 2.29
104 105 2.376518 AGCTGGAATTCTGGACCTGAAA 59.623 45.455 16.75 1.13 0.00 2.69
105 106 1.988107 AGCTGGAATTCTGGACCTGAA 59.012 47.619 15.36 15.36 0.00 3.02
106 107 1.280133 CAGCTGGAATTCTGGACCTGA 59.720 52.381 5.57 0.00 0.00 3.86
107 108 1.747709 CAGCTGGAATTCTGGACCTG 58.252 55.000 5.57 0.00 0.00 4.00
108 109 0.034670 GCAGCTGGAATTCTGGACCT 60.035 55.000 17.12 0.00 0.00 3.85
109 110 1.034292 GGCAGCTGGAATTCTGGACC 61.034 60.000 17.12 0.00 0.00 4.46
110 111 1.372087 CGGCAGCTGGAATTCTGGAC 61.372 60.000 17.12 0.00 0.00 4.02
111 112 1.078214 CGGCAGCTGGAATTCTGGA 60.078 57.895 17.12 0.00 0.00 3.86
112 113 2.117156 CCGGCAGCTGGAATTCTGG 61.117 63.158 16.28 8.81 29.82 3.86
113 114 0.107703 TACCGGCAGCTGGAATTCTG 60.108 55.000 28.29 2.83 33.36 3.02
114 115 0.618458 TTACCGGCAGCTGGAATTCT 59.382 50.000 28.29 6.40 33.36 2.40
115 116 1.680338 ATTACCGGCAGCTGGAATTC 58.320 50.000 28.29 0.00 33.36 2.17
116 117 2.143876 AATTACCGGCAGCTGGAATT 57.856 45.000 28.29 21.94 33.36 2.17
117 118 2.024414 GAAATTACCGGCAGCTGGAAT 58.976 47.619 28.29 17.77 33.36 3.01
118 119 1.004277 AGAAATTACCGGCAGCTGGAA 59.996 47.619 28.29 16.32 33.36 3.53
119 120 0.618458 AGAAATTACCGGCAGCTGGA 59.382 50.000 28.29 5.57 33.36 3.86
120 121 1.017387 GAGAAATTACCGGCAGCTGG 58.983 55.000 19.77 19.77 35.68 4.85
121 122 1.936547 GAGAGAAATTACCGGCAGCTG 59.063 52.381 10.11 10.11 0.00 4.24
122 123 1.834263 AGAGAGAAATTACCGGCAGCT 59.166 47.619 0.00 0.00 0.00 4.24
123 124 2.317530 AGAGAGAAATTACCGGCAGC 57.682 50.000 0.00 0.00 0.00 5.25
124 125 4.003648 ACAAAGAGAGAAATTACCGGCAG 58.996 43.478 0.00 0.00 0.00 4.85
125 126 3.751175 CACAAAGAGAGAAATTACCGGCA 59.249 43.478 0.00 0.00 0.00 5.69
126 127 3.751698 ACACAAAGAGAGAAATTACCGGC 59.248 43.478 0.00 0.00 0.00 6.13
127 128 7.295930 GTTTACACAAAGAGAGAAATTACCGG 58.704 38.462 0.00 0.00 0.00 5.28
128 129 7.172703 AGGTTTACACAAAGAGAGAAATTACCG 59.827 37.037 0.00 0.00 0.00 4.02
129 130 8.392372 AGGTTTACACAAAGAGAGAAATTACC 57.608 34.615 0.00 0.00 0.00 2.85
132 133 9.403583 TGTAAGGTTTACACAAAGAGAGAAATT 57.596 29.630 0.00 0.00 0.00 1.82
133 134 8.974060 TGTAAGGTTTACACAAAGAGAGAAAT 57.026 30.769 0.00 0.00 0.00 2.17
134 135 8.974060 ATGTAAGGTTTACACAAAGAGAGAAA 57.026 30.769 3.97 0.00 0.00 2.52
150 151 9.343539 GGCTTTTCTCTCATAATATGTAAGGTT 57.656 33.333 0.00 0.00 0.00 3.50
151 152 8.494433 TGGCTTTTCTCTCATAATATGTAAGGT 58.506 33.333 0.00 0.00 0.00 3.50
152 153 8.908786 TGGCTTTTCTCTCATAATATGTAAGG 57.091 34.615 0.00 0.00 0.00 2.69
163 164 9.336171 GAGTAATTCTAATGGCTTTTCTCTCAT 57.664 33.333 0.00 0.00 0.00 2.90
164 165 7.770897 GGAGTAATTCTAATGGCTTTTCTCTCA 59.229 37.037 0.00 0.00 0.00 3.27
165 166 7.770897 TGGAGTAATTCTAATGGCTTTTCTCTC 59.229 37.037 0.00 0.00 0.00 3.20
166 167 7.633789 TGGAGTAATTCTAATGGCTTTTCTCT 58.366 34.615 0.00 0.00 0.00 3.10
167 168 7.865706 TGGAGTAATTCTAATGGCTTTTCTC 57.134 36.000 0.00 0.00 0.00 2.87
168 169 9.920946 TTATGGAGTAATTCTAATGGCTTTTCT 57.079 29.630 0.00 0.00 0.00 2.52
171 172 9.700831 ACTTTATGGAGTAATTCTAATGGCTTT 57.299 29.630 0.00 0.00 0.00 3.51
172 173 9.125026 CACTTTATGGAGTAATTCTAATGGCTT 57.875 33.333 0.00 0.00 0.00 4.35
173 174 8.275040 ACACTTTATGGAGTAATTCTAATGGCT 58.725 33.333 0.00 0.00 0.00 4.75
174 175 8.451908 ACACTTTATGGAGTAATTCTAATGGC 57.548 34.615 0.00 0.00 0.00 4.40
234 235 9.961265 CTGATATGTCTATTTTGCATCATGTTT 57.039 29.630 0.00 0.00 0.00 2.83
235 236 9.128404 ACTGATATGTCTATTTTGCATCATGTT 57.872 29.630 0.00 0.00 0.00 2.71
236 237 8.687292 ACTGATATGTCTATTTTGCATCATGT 57.313 30.769 0.00 0.00 0.00 3.21
237 238 8.235226 GGACTGATATGTCTATTTTGCATCATG 58.765 37.037 0.00 0.00 37.16 3.07
238 239 7.392673 GGGACTGATATGTCTATTTTGCATCAT 59.607 37.037 0.00 0.00 37.16 2.45
239 240 6.712095 GGGACTGATATGTCTATTTTGCATCA 59.288 38.462 0.00 0.00 37.16 3.07
240 241 6.712095 TGGGACTGATATGTCTATTTTGCATC 59.288 38.462 0.00 0.00 37.16 3.91
241 242 6.488006 GTGGGACTGATATGTCTATTTTGCAT 59.512 38.462 0.00 0.00 37.16 3.96
242 243 5.822519 GTGGGACTGATATGTCTATTTTGCA 59.177 40.000 0.00 0.00 37.16 4.08
243 244 5.822519 TGTGGGACTGATATGTCTATTTTGC 59.177 40.000 0.00 0.00 37.16 3.68
244 245 6.484643 CCTGTGGGACTGATATGTCTATTTTG 59.515 42.308 0.00 0.00 37.16 2.44
245 246 6.595682 CCTGTGGGACTGATATGTCTATTTT 58.404 40.000 0.00 0.00 37.16 1.82
246 247 6.179906 CCTGTGGGACTGATATGTCTATTT 57.820 41.667 0.00 0.00 37.16 1.40
247 248 5.815233 CCTGTGGGACTGATATGTCTATT 57.185 43.478 0.00 0.00 37.16 1.73
285 286 2.764314 GCATCACACCCGTCATGGC 61.764 63.158 0.00 0.00 35.87 4.40
295 296 3.623060 ACGATTTCCTGTATGCATCACAC 59.377 43.478 0.19 0.00 0.00 3.82
316 317 1.016130 CACATCACACCTCCGCTCAC 61.016 60.000 0.00 0.00 0.00 3.51
348 349 4.099266 GCCTGATATTTAAACATGGGCACA 59.901 41.667 12.48 0.00 37.30 4.57
349 350 4.620982 GCCTGATATTTAAACATGGGCAC 58.379 43.478 12.48 0.00 37.30 5.01
351 352 3.305335 CCGCCTGATATTTAAACATGGGC 60.305 47.826 8.98 8.98 0.00 5.36
366 367 3.785859 GCCTGACATCCCGCCTGA 61.786 66.667 0.00 0.00 0.00 3.86
372 373 2.825836 CGCTTGGCCTGACATCCC 60.826 66.667 3.32 0.00 0.00 3.85
391 392 1.081094 GTCCGACATTAAACACCCCG 58.919 55.000 0.00 0.00 0.00 5.73
431 443 2.044352 AACCTATTGTGGCGCCCC 60.044 61.111 26.77 14.61 0.00 5.80
446 458 4.994744 GCATGGTTGCCAAGGAAC 57.005 55.556 0.00 0.00 43.38 3.62
460 472 3.527665 ACCTCCCACTATTAACCAAGCAT 59.472 43.478 0.00 0.00 0.00 3.79
461 473 2.916934 ACCTCCCACTATTAACCAAGCA 59.083 45.455 0.00 0.00 0.00 3.91
473 485 2.603776 GTCCGTCCACCTCCCACT 60.604 66.667 0.00 0.00 0.00 4.00
482 494 0.762418 AAATGACACCTGTCCGTCCA 59.238 50.000 2.98 0.00 44.15 4.02
486 498 2.414559 GCATTCAAATGACACCTGTCCG 60.415 50.000 6.91 0.00 44.15 4.79
491 503 2.086869 CTCCGCATTCAAATGACACCT 58.913 47.619 6.91 0.00 38.70 4.00
508 520 0.654683 GATGCACGCACATTCTCTCC 59.345 55.000 0.00 0.00 0.00 3.71
526 538 4.705519 GTCCGCGTTTCGTCCCGA 62.706 66.667 4.92 0.00 36.19 5.14
531 543 1.485032 GAAGTGTGTCCGCGTTTCGT 61.485 55.000 4.92 0.00 36.19 3.85
534 546 3.727146 GGAAGTGTGTCCGCGTTT 58.273 55.556 4.92 0.00 0.00 3.60
563 575 2.751436 GGAGCCGGCATTGAAGCA 60.751 61.111 31.54 0.00 35.83 3.91
574 586 2.202676 GAACTCTCGCTGGAGCCG 60.203 66.667 3.24 0.00 40.26 5.52
599 611 2.133553 CACATTCATGCCGCTCTAGAG 58.866 52.381 15.85 15.85 0.00 2.43
601 613 1.224075 CCACATTCATGCCGCTCTAG 58.776 55.000 0.00 0.00 0.00 2.43
605 617 3.142838 GGCCACATTCATGCCGCT 61.143 61.111 0.00 0.00 35.08 5.52
606 618 4.211502 GGGCCACATTCATGCCGC 62.212 66.667 4.39 0.00 46.31 6.53
635 661 1.795162 GCAGTTGCCGTACATTCATGC 60.795 52.381 0.00 0.00 34.31 4.06
643 669 1.491563 CACGAAGCAGTTGCCGTAC 59.508 57.895 7.82 0.00 43.38 3.67
654 680 1.634702 AGATCTTTCTCGCACGAAGC 58.365 50.000 0.00 0.00 40.87 3.86
658 684 1.656095 GTCCAAGATCTTTCTCGCACG 59.344 52.381 4.86 0.00 0.00 5.34
660 686 1.544246 TCGTCCAAGATCTTTCTCGCA 59.456 47.619 4.86 0.00 0.00 5.10
662 688 2.480416 CCCTCGTCCAAGATCTTTCTCG 60.480 54.545 4.86 10.40 0.00 4.04
670 696 0.397816 CCCTCTCCCTCGTCCAAGAT 60.398 60.000 0.00 0.00 0.00 2.40
673 699 0.473117 AAACCCTCTCCCTCGTCCAA 60.473 55.000 0.00 0.00 0.00 3.53
677 703 1.907255 CCTAAAAACCCTCTCCCTCGT 59.093 52.381 0.00 0.00 0.00 4.18
680 706 1.993301 CCACCTAAAAACCCTCTCCCT 59.007 52.381 0.00 0.00 0.00 4.20
706 732 1.200483 CACGCACGTGTCTGATATCC 58.800 55.000 18.38 0.00 40.91 2.59
713 739 1.591594 CACTTCCACGCACGTGTCT 60.592 57.895 20.53 0.00 44.02 3.41
714 740 0.944311 ATCACTTCCACGCACGTGTC 60.944 55.000 20.53 8.63 44.02 3.67
715 741 0.944311 GATCACTTCCACGCACGTGT 60.944 55.000 20.53 1.33 44.02 4.49
716 742 0.667487 AGATCACTTCCACGCACGTG 60.667 55.000 15.96 15.96 45.02 4.49
717 743 0.667487 CAGATCACTTCCACGCACGT 60.667 55.000 0.00 0.00 0.00 4.49
718 744 1.354337 CCAGATCACTTCCACGCACG 61.354 60.000 0.00 0.00 0.00 5.34
719 745 1.021390 CCCAGATCACTTCCACGCAC 61.021 60.000 0.00 0.00 0.00 5.34
720 746 1.296392 CCCAGATCACTTCCACGCA 59.704 57.895 0.00 0.00 0.00 5.24
721 747 2.109126 GCCCAGATCACTTCCACGC 61.109 63.158 0.00 0.00 0.00 5.34
722 748 1.021390 GTGCCCAGATCACTTCCACG 61.021 60.000 0.00 0.00 0.00 4.94
723 749 0.678048 GGTGCCCAGATCACTTCCAC 60.678 60.000 0.00 0.00 34.97 4.02
724 750 0.842030 AGGTGCCCAGATCACTTCCA 60.842 55.000 0.00 0.00 34.97 3.53
725 751 0.393537 CAGGTGCCCAGATCACTTCC 60.394 60.000 0.00 0.00 34.97 3.46
726 752 1.028868 GCAGGTGCCCAGATCACTTC 61.029 60.000 0.00 0.00 34.97 3.01
727 753 1.001641 GCAGGTGCCCAGATCACTT 60.002 57.895 0.00 0.00 34.97 3.16
728 754 1.782201 TTGCAGGTGCCCAGATCACT 61.782 55.000 0.00 0.00 41.18 3.41
729 755 0.895100 TTTGCAGGTGCCCAGATCAC 60.895 55.000 0.00 0.00 41.18 3.06
730 756 0.178967 TTTTGCAGGTGCCCAGATCA 60.179 50.000 0.00 0.00 41.18 2.92
731 757 0.244721 GTTTTGCAGGTGCCCAGATC 59.755 55.000 0.00 0.00 41.18 2.75
732 758 1.187567 GGTTTTGCAGGTGCCCAGAT 61.188 55.000 0.00 0.00 41.18 2.90
733 759 1.832167 GGTTTTGCAGGTGCCCAGA 60.832 57.895 0.00 0.00 41.18 3.86
734 760 1.809567 GAGGTTTTGCAGGTGCCCAG 61.810 60.000 0.00 0.00 41.18 4.45
735 761 1.832167 GAGGTTTTGCAGGTGCCCA 60.832 57.895 0.00 0.00 41.18 5.36
736 762 2.574018 GGAGGTTTTGCAGGTGCCC 61.574 63.158 0.00 0.00 41.18 5.36
737 763 2.574018 GGGAGGTTTTGCAGGTGCC 61.574 63.158 0.00 0.00 41.18 5.01
738 764 1.809567 CTGGGAGGTTTTGCAGGTGC 61.810 60.000 0.00 0.00 42.50 5.01
739 765 0.468029 ACTGGGAGGTTTTGCAGGTG 60.468 55.000 0.00 0.00 0.00 4.00
740 766 0.261696 AACTGGGAGGTTTTGCAGGT 59.738 50.000 0.00 0.00 0.00 4.00
741 767 1.069049 CAAACTGGGAGGTTTTGCAGG 59.931 52.381 0.00 0.00 37.32 4.85
742 768 1.538849 GCAAACTGGGAGGTTTTGCAG 60.539 52.381 12.21 0.00 37.32 4.41
743 769 0.463620 GCAAACTGGGAGGTTTTGCA 59.536 50.000 12.21 0.00 37.32 4.08
744 770 0.752658 AGCAAACTGGGAGGTTTTGC 59.247 50.000 9.68 9.68 37.32 3.68
745 771 2.695147 AGAAGCAAACTGGGAGGTTTTG 59.305 45.455 0.00 0.00 37.32 2.44
746 772 2.695147 CAGAAGCAAACTGGGAGGTTTT 59.305 45.455 0.00 0.00 37.32 2.43
747 773 2.091885 TCAGAAGCAAACTGGGAGGTTT 60.092 45.455 0.00 0.00 39.62 3.27
748 774 1.494721 TCAGAAGCAAACTGGGAGGTT 59.505 47.619 0.00 0.00 36.22 3.50
749 775 1.140312 TCAGAAGCAAACTGGGAGGT 58.860 50.000 0.00 0.00 36.22 3.85
750 776 2.503895 ATCAGAAGCAAACTGGGAGG 57.496 50.000 0.00 0.00 36.22 4.30
751 777 5.649395 TCATAAATCAGAAGCAAACTGGGAG 59.351 40.000 0.00 0.00 36.22 4.30
752 778 5.569355 TCATAAATCAGAAGCAAACTGGGA 58.431 37.500 0.00 0.00 36.22 4.37
753 779 5.649395 TCTCATAAATCAGAAGCAAACTGGG 59.351 40.000 0.00 0.00 36.22 4.45
754 780 6.748333 TCTCATAAATCAGAAGCAAACTGG 57.252 37.500 0.00 0.00 36.22 4.00
755 781 8.295288 ACTTTCTCATAAATCAGAAGCAAACTG 58.705 33.333 0.00 0.00 36.80 3.16
756 782 8.295288 CACTTTCTCATAAATCAGAAGCAAACT 58.705 33.333 0.00 0.00 30.32 2.66
773 799 2.143122 GCATGAACGTCCACTTTCTCA 58.857 47.619 0.00 0.00 0.00 3.27
780 806 0.517316 GAACAGGCATGAACGTCCAC 59.483 55.000 4.84 0.00 0.00 4.02
781 807 0.107643 TGAACAGGCATGAACGTCCA 59.892 50.000 4.84 0.00 0.00 4.02
791 817 2.025131 TCCATCCATTCATGAACAGGCA 60.025 45.455 19.27 11.41 0.00 4.75
792 818 2.658285 TCCATCCATTCATGAACAGGC 58.342 47.619 19.27 0.00 0.00 4.85
819 845 8.824783 ACCCATCCATTCATGAATTTCTAAAAA 58.175 29.630 18.41 0.00 0.00 1.94
820 846 8.259411 CACCCATCCATTCATGAATTTCTAAAA 58.741 33.333 18.41 0.24 0.00 1.52
821 847 7.633334 GCACCCATCCATTCATGAATTTCTAAA 60.633 37.037 18.41 1.57 0.00 1.85
822 848 6.183360 GCACCCATCCATTCATGAATTTCTAA 60.183 38.462 18.41 3.23 0.00 2.10
823 849 5.302568 GCACCCATCCATTCATGAATTTCTA 59.697 40.000 18.41 4.91 0.00 2.10
824 850 4.100498 GCACCCATCCATTCATGAATTTCT 59.900 41.667 18.41 3.14 0.00 2.52
825 851 4.374399 GCACCCATCCATTCATGAATTTC 58.626 43.478 18.41 0.00 0.00 2.17
826 852 3.135167 GGCACCCATCCATTCATGAATTT 59.865 43.478 18.41 4.02 0.00 1.82
827 853 2.701951 GGCACCCATCCATTCATGAATT 59.298 45.455 18.41 1.56 0.00 2.17
828 854 2.322658 GGCACCCATCCATTCATGAAT 58.677 47.619 15.36 15.36 0.00 2.57
861 887 2.144482 TCGAGGTTCGAACTTGTTCC 57.856 50.000 26.32 10.04 46.90 3.62
871 897 2.969443 AGCATTTTGTTCGAGGTTCG 57.031 45.000 0.00 0.00 42.10 3.95
872 898 2.726241 GCAAGCATTTTGTTCGAGGTTC 59.274 45.455 0.00 0.00 0.00 3.62
873 899 2.362077 AGCAAGCATTTTGTTCGAGGTT 59.638 40.909 0.00 0.00 0.00 3.50
874 900 1.956477 AGCAAGCATTTTGTTCGAGGT 59.044 42.857 0.00 0.00 0.00 3.85
875 901 2.322161 CAGCAAGCATTTTGTTCGAGG 58.678 47.619 0.00 0.00 0.00 4.63
876 902 2.322161 CCAGCAAGCATTTTGTTCGAG 58.678 47.619 0.00 0.00 0.00 4.04
878 904 0.785979 GCCAGCAAGCATTTTGTTCG 59.214 50.000 0.00 0.00 0.00 3.95
879 905 0.785979 CGCCAGCAAGCATTTTGTTC 59.214 50.000 0.00 0.00 0.00 3.18
880 906 0.600782 CCGCCAGCAAGCATTTTGTT 60.601 50.000 0.00 0.00 0.00 2.83
883 909 0.106521 AAACCGCCAGCAAGCATTTT 59.893 45.000 0.00 0.00 0.00 1.82
920 1234 0.542938 GGGCCTGGGCTTTTTCTCTT 60.543 55.000 20.47 0.00 41.60 2.85
947 1261 2.445145 TCCTTGGGGTTTCAACAGATCA 59.555 45.455 0.00 0.00 0.00 2.92
1166 1481 3.157252 GGATCTCCGCCTCAGCCA 61.157 66.667 0.00 0.00 34.57 4.75
1236 1551 2.544267 GGAGAAACGAACAACTGACCTG 59.456 50.000 0.00 0.00 0.00 4.00
1272 1587 1.893137 TCTGCGACTTGAGCTTCCTAA 59.107 47.619 0.00 0.00 35.28 2.69
2086 2684 4.767841 CGCGCGCTGTCTCAGAGT 62.768 66.667 30.48 0.00 33.92 3.24
2100 2698 3.929948 GAATGAAGAGCCGCCGCG 61.930 66.667 5.59 5.59 41.18 6.46
2105 2703 1.720301 GCTGCTGAATGAAGAGCCG 59.280 57.895 0.00 0.00 34.04 5.52
2134 2732 2.624557 GCCCATCTATCTACGGGAGGAT 60.625 54.545 0.00 0.00 41.62 3.24
2153 2751 1.014352 AACTCAACACACAAGACGCC 58.986 50.000 0.00 0.00 0.00 5.68
2184 2782 3.683055 CGTCAACACACGTGACGT 58.317 55.556 25.01 15.90 46.86 4.34
2218 3918 1.774110 TCCAACAACACAAGGCACAT 58.226 45.000 0.00 0.00 0.00 3.21
2535 4323 3.253432 GTCCACAACCAATCTTGTCTTCC 59.747 47.826 0.00 0.00 31.73 3.46
2890 4684 5.972107 TTACTCTCACAAGGTACCAGTAC 57.028 43.478 15.94 0.00 35.40 2.73
2927 4721 9.516314 GTTCACAAAATTTACATATCCTTAGGC 57.484 33.333 0.00 0.00 0.00 3.93
2951 4745 4.458397 CATGCCACAGATTAGGAGATGTT 58.542 43.478 0.00 0.00 0.00 2.71
3049 4843 2.734755 ATGAGAAATCCGCCCAATCA 57.265 45.000 0.00 0.00 0.00 2.57
3192 4986 8.695456 CCTGAAAAAGGCAACATTATATAGGTT 58.305 33.333 0.00 0.00 39.93 3.50
3210 5004 2.123409 GTGCCAGCCACCTGAAAAA 58.877 52.632 0.00 0.00 41.77 1.94
3249 5043 4.101585 CCATGAGGGTTGATAGTAAGCAGA 59.898 45.833 0.00 0.00 0.00 4.26
3348 5142 1.172175 GCTTTCAAAGAGAGCCTGGG 58.828 55.000 0.00 0.00 34.32 4.45
3496 5290 6.608610 GGCAGTAATACGAACTGTCAAAATT 58.391 36.000 3.12 0.00 46.47 1.82
3536 8835 2.483013 GGCATACAAGATGGACGTGCTA 60.483 50.000 8.99 0.00 0.00 3.49
3620 8919 1.732259 CGGTCCATTCAACTACACAGC 59.268 52.381 0.00 0.00 0.00 4.40
3628 8927 2.163818 TGTGAGACGGTCCATTCAAC 57.836 50.000 4.14 0.00 0.00 3.18
3632 8931 0.324614 TGCATGTGAGACGGTCCATT 59.675 50.000 4.14 0.00 0.00 3.16
3722 9029 0.319469 GATTTTGTGCCACAACCCGG 60.319 55.000 10.34 0.00 37.90 5.73
3723 9030 0.673437 AGATTTTGTGCCACAACCCG 59.327 50.000 10.34 0.00 37.90 5.28
3724 9031 1.270252 CCAGATTTTGTGCCACAACCC 60.270 52.381 10.34 2.50 37.90 4.11
3725 9032 1.873486 GCCAGATTTTGTGCCACAACC 60.873 52.381 10.34 2.86 37.90 3.77
3726 9033 1.202510 TGCCAGATTTTGTGCCACAAC 60.203 47.619 10.34 0.00 37.90 3.32
3727 9034 1.117994 TGCCAGATTTTGTGCCACAA 58.882 45.000 6.08 6.08 36.11 3.33
3728 9035 1.273048 GATGCCAGATTTTGTGCCACA 59.727 47.619 0.00 0.00 0.00 4.17
3729 9036 1.547372 AGATGCCAGATTTTGTGCCAC 59.453 47.619 0.00 0.00 0.00 5.01
3730 9037 1.927487 AGATGCCAGATTTTGTGCCA 58.073 45.000 0.00 0.00 0.00 4.92
3731 9038 3.323751 AAAGATGCCAGATTTTGTGCC 57.676 42.857 0.00 0.00 0.00 5.01
3732 9039 6.101332 TCAATAAAGATGCCAGATTTTGTGC 58.899 36.000 0.00 0.00 0.00 4.57
3733 9040 8.600625 CATTCAATAAAGATGCCAGATTTTGTG 58.399 33.333 0.00 0.00 0.00 3.33
3734 9041 7.279313 GCATTCAATAAAGATGCCAGATTTTGT 59.721 33.333 0.00 0.00 32.56 2.83
3735 9042 7.627340 GCATTCAATAAAGATGCCAGATTTTG 58.373 34.615 0.00 0.00 32.56 2.44
3736 9043 7.781548 GCATTCAATAAAGATGCCAGATTTT 57.218 32.000 0.00 0.00 32.56 1.82
3744 9051 2.362077 ACCCGGCATTCAATAAAGATGC 59.638 45.455 0.00 0.00 37.51 3.91
3745 9052 4.142182 ACAACCCGGCATTCAATAAAGATG 60.142 41.667 0.00 0.00 0.00 2.90
3746 9053 4.023291 ACAACCCGGCATTCAATAAAGAT 58.977 39.130 0.00 0.00 0.00 2.40
3747 9054 3.426615 ACAACCCGGCATTCAATAAAGA 58.573 40.909 0.00 0.00 0.00 2.52
3748 9055 3.866883 ACAACCCGGCATTCAATAAAG 57.133 42.857 0.00 0.00 0.00 1.85
3749 9056 3.129638 GCTACAACCCGGCATTCAATAAA 59.870 43.478 0.00 0.00 0.00 1.40
3750 9057 2.685897 GCTACAACCCGGCATTCAATAA 59.314 45.455 0.00 0.00 0.00 1.40
3751 9058 2.294074 GCTACAACCCGGCATTCAATA 58.706 47.619 0.00 0.00 0.00 1.90
3752 9059 1.102978 GCTACAACCCGGCATTCAAT 58.897 50.000 0.00 0.00 0.00 2.57
3753 9060 0.250945 TGCTACAACCCGGCATTCAA 60.251 50.000 0.00 0.00 0.00 2.69
3754 9061 0.958382 GTGCTACAACCCGGCATTCA 60.958 55.000 0.00 0.00 38.27 2.57
3755 9062 0.958382 TGTGCTACAACCCGGCATTC 60.958 55.000 0.00 0.00 38.27 2.67
3756 9063 0.538516 TTGTGCTACAACCCGGCATT 60.539 50.000 0.00 0.00 38.27 3.56
3809 9116 3.254060 ACTATTGCTAGTGTGTGCTTCG 58.746 45.455 0.00 0.00 36.81 3.79
3869 9176 0.882927 TACCTGCGTGTGCTTCAACC 60.883 55.000 0.00 0.00 43.34 3.77
3911 9218 9.360093 CGCTCTTATATTAGTTTATGAAGGGAG 57.640 37.037 0.00 0.00 0.00 4.30
3912 9219 8.867097 ACGCTCTTATATTAGTTTATGAAGGGA 58.133 33.333 0.00 0.00 0.00 4.20
3913 9220 9.490379 AACGCTCTTATATTAGTTTATGAAGGG 57.510 33.333 0.00 0.00 0.00 3.95
3935 9242 9.351570 AGATTACTAAAGTAGTGTTCTAAACGC 57.648 33.333 0.00 0.00 39.81 4.84
3964 9271 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
3966 9273 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3975 9282 9.454859 GTAACTACTACTCCCTCTGTAAACTAA 57.545 37.037 0.00 0.00 0.00 2.24
3976 9283 8.830741 AGTAACTACTACTCCCTCTGTAAACTA 58.169 37.037 0.00 0.00 35.90 2.24
3977 9284 7.697946 AGTAACTACTACTCCCTCTGTAAACT 58.302 38.462 0.00 0.00 35.90 2.66
3978 9285 7.936496 AGTAACTACTACTCCCTCTGTAAAC 57.064 40.000 0.00 0.00 35.90 2.01
3981 9288 9.678260 CTTTTAGTAACTACTACTCCCTCTGTA 57.322 37.037 0.00 0.00 40.21 2.74
3982 9289 8.389366 TCTTTTAGTAACTACTACTCCCTCTGT 58.611 37.037 0.00 0.00 40.21 3.41
3983 9290 8.804912 TCTTTTAGTAACTACTACTCCCTCTG 57.195 38.462 0.00 0.00 40.21 3.35
3984 9291 9.465199 CTTCTTTTAGTAACTACTACTCCCTCT 57.535 37.037 0.00 0.00 40.21 3.69
3985 9292 9.241919 ACTTCTTTTAGTAACTACTACTCCCTC 57.758 37.037 0.00 0.00 40.21 4.30
4059 9366 7.224297 TGCTTCCTACTTTGATTTCTTGTAGT 58.776 34.615 0.00 0.00 31.48 2.73
4149 9606 2.049248 CCGGCAAGCACGCAAATT 60.049 55.556 0.00 0.00 0.00 1.82
4150 9607 2.983030 TCCGGCAAGCACGCAAAT 60.983 55.556 0.00 0.00 0.00 2.32
4151 9608 3.959975 GTCCGGCAAGCACGCAAA 61.960 61.111 0.00 0.00 0.00 3.68
4154 9611 4.389576 CTTGTCCGGCAAGCACGC 62.390 66.667 20.56 0.00 46.68 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.