Multiple sequence alignment - TraesCS5D01G165900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G165900 chr5D 100.000 3273 0 0 1 3273 257696329 257693057 0.000000e+00 6045
1 TraesCS5D01G165900 chr5B 93.496 2952 107 30 1 2908 292004159 292001249 0.000000e+00 4309
2 TraesCS5D01G165900 chr5A 93.253 2920 113 39 1 2865 342358118 342355228 0.000000e+00 4224
3 TraesCS5D01G165900 chr5A 90.253 277 19 5 3004 3273 342354982 342354707 4.020000e-94 355


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G165900 chr5D 257693057 257696329 3272 True 6045.0 6045 100.000 1 3273 1 chr5D.!!$R1 3272
1 TraesCS5D01G165900 chr5B 292001249 292004159 2910 True 4309.0 4309 93.496 1 2908 1 chr5B.!!$R1 2907
2 TraesCS5D01G165900 chr5A 342354707 342358118 3411 True 2289.5 4224 91.753 1 3273 2 chr5A.!!$R1 3272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 54 0.326048 CAGGATCTGGAGGAGGGTGT 60.326 60.0 0.0 0.0 0.00 4.16 F
1923 2026 0.104671 GCCAATGCCACTGTTTGTGT 59.895 50.0 0.0 0.0 44.81 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 2030 1.143183 CATTGGCAAGCCCATCAGC 59.857 57.895 8.89 0.0 44.89 4.26 R
3034 3252 0.470766 TTGCCAGGACGGTGTTTACT 59.529 50.000 0.00 0.0 36.97 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.555518 GTGTTCTTTGACGAGATTTGGC 58.444 45.455 0.00 0.00 0.00 4.52
50 51 1.383803 GCAGGATCTGGAGGAGGGT 60.384 63.158 0.00 0.00 31.21 4.34
52 54 0.326048 CAGGATCTGGAGGAGGGTGT 60.326 60.000 0.00 0.00 0.00 4.16
59 61 3.050089 TCTGGAGGAGGGTGTAAAAACA 58.950 45.455 0.00 0.00 0.00 2.83
91 93 2.266055 GACTCCTTGGAGGTGCGG 59.734 66.667 19.51 0.00 36.53 5.69
134 138 3.227614 GAAGAGAGATGGAGGGTAGACC 58.772 54.545 0.00 0.00 40.67 3.85
158 162 5.491070 GGAAGGGCTATTTTGCAAAAAGAT 58.509 37.500 27.10 14.35 34.04 2.40
160 164 4.747810 AGGGCTATTTTGCAAAAAGATCG 58.252 39.130 27.10 14.54 34.04 3.69
163 167 5.062183 GGGCTATTTTGCAAAAAGATCGAAC 59.938 40.000 27.10 12.33 34.04 3.95
186 190 6.273825 ACATCAAAGTAAGTATACGGCTCAG 58.726 40.000 0.00 0.00 37.11 3.35
242 270 5.344743 TGCGGGAAATGAGGATATATCTC 57.655 43.478 12.42 8.51 0.00 2.75
279 307 2.412870 CCGAAGGCAATTTGAAAACCC 58.587 47.619 0.00 0.00 46.14 4.11
289 317 5.463724 GCAATTTGAAAACCCACGTATTTGA 59.536 36.000 0.00 0.00 0.00 2.69
297 327 9.843334 TGAAAACCCACGTATTTGATATAAAAC 57.157 29.630 0.00 0.00 0.00 2.43
436 466 1.808799 ATCACAAGCGAGCAGAGCG 60.809 57.895 0.00 0.00 40.04 5.03
440 476 1.873125 CAAGCGAGCAGAGCGAGAG 60.873 63.158 0.00 0.00 40.04 3.20
489 529 2.593956 GGCTCCCGTGTCCTTCCTT 61.594 63.158 0.00 0.00 0.00 3.36
490 530 1.079057 GCTCCCGTGTCCTTCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
491 531 1.597461 CTCCCGTGTCCTTCCTTCC 59.403 63.158 0.00 0.00 0.00 3.46
492 532 0.905337 CTCCCGTGTCCTTCCTTCCT 60.905 60.000 0.00 0.00 0.00 3.36
493 533 1.192146 TCCCGTGTCCTTCCTTCCTG 61.192 60.000 0.00 0.00 0.00 3.86
556 609 3.485051 GCGAAAACCAAAAGCAAACCAAG 60.485 43.478 0.00 0.00 0.00 3.61
558 611 4.201676 CGAAAACCAAAAGCAAACCAAGTC 60.202 41.667 0.00 0.00 0.00 3.01
562 615 2.695147 CCAAAAGCAAACCAAGTCCTCT 59.305 45.455 0.00 0.00 0.00 3.69
565 618 0.402121 AGCAAACCAAGTCCTCTCCC 59.598 55.000 0.00 0.00 0.00 4.30
656 725 1.135721 CAATAAAGAAGCTGCTGCCCC 59.864 52.381 12.44 4.38 40.80 5.80
987 1087 3.442625 CACTGTATCTGTACCCACGAGAA 59.557 47.826 0.00 0.00 0.00 2.87
988 1088 4.098044 CACTGTATCTGTACCCACGAGAAT 59.902 45.833 0.00 0.00 0.00 2.40
1171 1271 2.596851 GGCAAGGAGGAGGTGCTGA 61.597 63.158 0.00 0.00 38.36 4.26
1515 1615 4.200283 CTCCTCGTGCTCTCGGCC 62.200 72.222 0.00 0.00 40.92 6.13
1654 1754 0.107214 TCTTCCCCGTCCATGCATTC 60.107 55.000 0.00 0.00 0.00 2.67
1657 1757 1.526917 CCCCGTCCATGCATTCCTC 60.527 63.158 0.00 0.00 0.00 3.71
1661 1761 1.579698 CGTCCATGCATTCCTCTCTG 58.420 55.000 0.00 0.00 0.00 3.35
1673 1773 6.600822 TGCATTCCTCTCTGAAGAATAAAAGG 59.399 38.462 0.00 0.00 0.00 3.11
1879 1979 3.434637 GTTAGCGGTTGCCACATTATTG 58.565 45.455 0.00 0.00 44.31 1.90
1893 1996 1.086696 TTATTGCCAGCTGTCTTCGC 58.913 50.000 13.81 8.99 0.00 4.70
1923 2026 0.104671 GCCAATGCCACTGTTTGTGT 59.895 50.000 0.00 0.00 44.81 3.72
1927 2030 3.117794 CAATGCCACTGTTTGTGTTCAG 58.882 45.455 0.00 0.00 44.81 3.02
2242 2348 4.015406 ACGGCGATGCTTCCACCA 62.015 61.111 16.62 0.00 0.00 4.17
2332 2438 3.057456 CCTATAGCTCGCCGTAGAACAAT 60.057 47.826 0.00 0.00 0.00 2.71
2415 2521 0.108520 ATTTTGCAATGCGGCTGGAG 60.109 50.000 0.00 0.00 34.04 3.86
2482 2588 4.922206 TGATGGTTCTTGGAGTAGCATTT 58.078 39.130 1.76 0.00 34.59 2.32
2710 2821 1.473677 GCCTTGATTGTGTGCTGCATA 59.526 47.619 5.27 0.00 0.00 3.14
2711 2822 2.733227 GCCTTGATTGTGTGCTGCATAC 60.733 50.000 20.78 20.78 0.00 2.39
2712 2823 2.751259 CCTTGATTGTGTGCTGCATACT 59.249 45.455 26.12 10.55 0.00 2.12
2713 2824 3.940852 CCTTGATTGTGTGCTGCATACTA 59.059 43.478 26.12 20.64 0.00 1.82
2776 2887 5.999600 TCATGTGCCATGACTAATAATGAGG 59.000 40.000 12.22 0.00 0.00 3.86
2778 2889 5.754782 TGTGCCATGACTAATAATGAGGTT 58.245 37.500 0.00 0.00 0.00 3.50
2825 2939 1.158434 TCCGACGTTGGGCAAAATAC 58.842 50.000 21.96 0.00 0.00 1.89
2826 2940 0.875728 CCGACGTTGGGCAAAATACA 59.124 50.000 14.66 0.00 0.00 2.29
2827 2941 1.135803 CCGACGTTGGGCAAAATACAG 60.136 52.381 14.66 0.00 0.00 2.74
2828 2942 1.533731 CGACGTTGGGCAAAATACAGT 59.466 47.619 0.00 0.00 0.00 3.55
2829 2943 2.737783 CGACGTTGGGCAAAATACAGTA 59.262 45.455 0.00 0.00 0.00 2.74
2841 2955 8.182227 GGGCAAAATACAGTAGAAAACTATGAC 58.818 37.037 0.00 0.00 35.76 3.06
2849 2963 8.467402 ACAGTAGAAAACTATGACGAAGAATG 57.533 34.615 0.00 0.00 35.76 2.67
2867 3030 5.006386 AGAATGTTTTTAGAGGGTGCTCAG 58.994 41.667 0.00 0.00 0.00 3.35
2921 3084 3.084786 GAGAAAATAGGGCTGCACAACT 58.915 45.455 4.01 0.00 0.00 3.16
2928 3091 0.875059 GGGCTGCACAACTCTACAAC 59.125 55.000 0.50 0.00 0.00 3.32
2929 3092 1.543429 GGGCTGCACAACTCTACAACT 60.543 52.381 0.50 0.00 0.00 3.16
2944 3107 8.664211 ACTCTACAACTAAGGTTCTTCAAAAG 57.336 34.615 0.00 0.00 32.73 2.27
2950 3113 2.492019 AGGTTCTTCAAAAGCAACGC 57.508 45.000 0.00 0.00 0.00 4.84
2958 3121 1.952990 TCAAAAGCAACGCATCAAGGA 59.047 42.857 0.00 0.00 0.00 3.36
2983 3170 2.957402 TGCCATATCTTCACCCCATC 57.043 50.000 0.00 0.00 0.00 3.51
2989 3176 0.179000 ATCTTCACCCCATCGAGCAC 59.821 55.000 0.00 0.00 0.00 4.40
2992 3179 2.501223 TTCACCCCATCGAGCACGTC 62.501 60.000 2.86 0.00 40.69 4.34
2994 3181 2.202797 CCCCATCGAGCACGTCTG 60.203 66.667 2.86 2.91 40.69 3.51
3020 3238 5.232838 GCAAACTCCAAAACAATGTCTTCAG 59.767 40.000 0.00 0.00 0.00 3.02
3034 3252 3.490439 TCTTCAGCAAAGACACCATGA 57.510 42.857 0.00 0.00 39.12 3.07
3049 3267 2.289444 ACCATGAGTAAACACCGTCCTG 60.289 50.000 0.00 0.00 0.00 3.86
3055 3273 0.250553 TAAACACCGTCCTGGCAAGG 60.251 55.000 0.00 0.00 46.06 3.61
3066 3284 3.499737 GGCAAGGTGCGACCATCG 61.500 66.667 7.86 0.00 46.21 3.84
3082 3300 0.106708 ATCGAATGTCGGACCATGGG 59.893 55.000 18.09 0.00 40.88 4.00
3091 3309 0.251165 CGGACCATGGGTTTTCACCT 60.251 55.000 18.09 0.00 43.65 4.00
3092 3310 1.545841 GGACCATGGGTTTTCACCTC 58.454 55.000 18.09 0.24 43.65 3.85
3093 3311 1.165270 GACCATGGGTTTTCACCTCG 58.835 55.000 18.09 0.00 43.65 4.63
3094 3312 0.768622 ACCATGGGTTTTCACCTCGA 59.231 50.000 18.09 0.00 43.65 4.04
3100 3318 2.092861 TGGGTTTTCACCTCGAAGTTCA 60.093 45.455 3.32 0.00 43.65 3.18
3148 3372 1.080722 TTGGCATGGAGGGGCAAAT 59.919 52.632 0.00 0.00 46.14 2.32
3185 3409 7.214467 TGGAAACTGAAATAAATCACTCCAC 57.786 36.000 0.00 0.00 29.22 4.02
3222 3446 0.305922 GCAATCGCTCACCTGCATAC 59.694 55.000 0.00 0.00 34.87 2.39
3258 3482 0.106268 ACCATGCGCCCAAATCCATA 60.106 50.000 4.18 0.00 0.00 2.74
3263 3487 0.668535 GCGCCCAAATCCATACTTCC 59.331 55.000 0.00 0.00 0.00 3.46
3269 3493 3.627577 CCCAAATCCATACTTCCGAACAG 59.372 47.826 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.326048 ACACCCTCCTCCAGATCCTG 60.326 60.000 0.00 0.00 0.00 3.86
40 41 3.460340 TCTTGTTTTTACACCCTCCTCCA 59.540 43.478 0.00 0.00 0.00 3.86
50 51 7.332182 GTCCACCACAAATTTCTTGTTTTTACA 59.668 33.333 0.00 0.00 0.00 2.41
52 54 7.616313 AGTCCACCACAAATTTCTTGTTTTTA 58.384 30.769 0.00 0.00 0.00 1.52
59 61 4.184649 AGGAGTCCACCACAAATTTCTT 57.815 40.909 12.86 0.00 0.00 2.52
91 93 2.262915 CTCACCGGAGAGCACCAC 59.737 66.667 16.23 0.00 44.26 4.16
134 138 3.311486 TTTTGCAAAATAGCCCTTCCG 57.689 42.857 20.46 0.00 0.00 4.30
158 162 5.745294 GCCGTATACTTACTTTGATGTTCGA 59.255 40.000 0.56 0.00 0.00 3.71
160 164 6.755141 TGAGCCGTATACTTACTTTGATGTTC 59.245 38.462 0.56 0.00 0.00 3.18
163 167 6.418226 GTCTGAGCCGTATACTTACTTTGATG 59.582 42.308 0.56 0.00 0.00 3.07
186 190 4.890581 AGATATACCCTCACTCACTGTGTC 59.109 45.833 7.79 0.00 46.27 3.67
220 226 5.026121 AGAGATATATCCTCATTTCCCGCA 58.974 41.667 9.18 0.00 33.25 5.69
234 240 7.114866 CATGACATGCTCTCCAGAGATATAT 57.885 40.000 7.84 0.00 44.74 0.86
297 327 6.018589 GAAAGGAGGTTCTTTCCAAGATTG 57.981 41.667 0.00 0.00 43.96 2.67
309 339 5.295540 GCATATTCTCTGTGAAAGGAGGTTC 59.704 44.000 0.00 0.00 38.29 3.62
400 430 1.649271 ATGGATGGACCTTGCCTCCC 61.649 60.000 0.00 0.00 39.86 4.30
436 466 1.724082 GTGCTGTCTTTTCTCGCTCTC 59.276 52.381 0.00 0.00 0.00 3.20
440 476 0.110464 GCAGTGCTGTCTTTTCTCGC 60.110 55.000 8.18 0.00 0.00 5.03
441 477 1.458827 GAGCAGTGCTGTCTTTTCTCG 59.541 52.381 25.35 0.00 39.88 4.04
442 478 1.458827 CGAGCAGTGCTGTCTTTTCTC 59.541 52.381 25.35 3.55 39.88 2.87
443 479 1.506493 CGAGCAGTGCTGTCTTTTCT 58.494 50.000 25.35 0.00 39.88 2.52
444 480 0.110464 GCGAGCAGTGCTGTCTTTTC 60.110 55.000 25.35 5.18 39.88 2.29
445 481 1.510480 GGCGAGCAGTGCTGTCTTTT 61.510 55.000 25.35 0.00 39.88 2.27
556 609 2.284151 GGGAGGAGGGGAGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
558 611 3.039526 AGGGGAGGAGGGGAGAGG 61.040 72.222 0.00 0.00 0.00 3.69
565 618 3.369161 ATTGGGGGAGGGGAGGAGG 62.369 68.421 0.00 0.00 0.00 4.30
987 1087 0.837272 AGGCCATGGCTACAACGTAT 59.163 50.000 34.70 8.19 41.60 3.06
988 1088 0.616371 AAGGCCATGGCTACAACGTA 59.384 50.000 34.70 0.00 37.50 3.57
1105 1205 2.372690 CGTCGTCAAGAGCCAACGG 61.373 63.158 0.00 0.00 37.05 4.44
1106 1206 1.337817 CTCGTCGTCAAGAGCCAACG 61.338 60.000 0.00 0.00 37.74 4.10
1107 1207 2.435741 CTCGTCGTCAAGAGCCAAC 58.564 57.895 0.00 0.00 0.00 3.77
1108 1208 4.966005 CTCGTCGTCAAGAGCCAA 57.034 55.556 0.00 0.00 0.00 4.52
1386 1486 2.671682 GTCTCCTCCACCTTGGCC 59.328 66.667 0.00 0.00 37.47 5.36
1654 1754 4.808364 CGAGCCTTTTATTCTTCAGAGAGG 59.192 45.833 0.00 0.00 32.44 3.69
1657 1757 6.279882 AGATCGAGCCTTTTATTCTTCAGAG 58.720 40.000 0.00 0.00 0.00 3.35
1661 1761 7.010275 ACGTAAAGATCGAGCCTTTTATTCTTC 59.990 37.037 17.19 0.00 35.65 2.87
1673 1773 1.253034 CGCTTGACGTAAAGATCGAGC 59.747 52.381 17.30 9.17 45.38 5.03
1923 2026 1.679977 GGCAAGCCCATCAGCTGAA 60.680 57.895 22.50 4.23 44.11 3.02
1927 2030 1.143183 CATTGGCAAGCCCATCAGC 59.857 57.895 8.89 0.00 44.89 4.26
2242 2348 4.779966 TCGCGGCTCTCCTCGTCT 62.780 66.667 6.13 0.00 41.12 4.18
2332 2438 2.443203 TTCCCTGATCGCCGGCTA 60.443 61.111 26.68 15.56 0.00 3.93
2385 2491 5.373262 CGCATTGCAAAATTACACCTTTTC 58.627 37.500 1.71 0.00 0.00 2.29
2415 2521 1.066358 CCCCTACAGGAACCGTCTTTC 60.066 57.143 0.00 0.00 38.24 2.62
2466 2572 5.045651 TCCATGAGAAATGCTACTCCAAGAA 60.046 40.000 0.00 0.00 32.84 2.52
2482 2588 1.623557 CCTTGTCCCTCCTCCATGAGA 60.624 57.143 0.00 0.00 34.11 3.27
2531 2642 1.479709 GTAGAGAGGGAGCAAGCTGA 58.520 55.000 0.00 0.00 0.00 4.26
2533 2644 0.033991 TCGTAGAGAGGGAGCAAGCT 60.034 55.000 0.00 0.00 0.00 3.74
2776 2887 1.445582 CGTAGTGCTCGACCCCAAC 60.446 63.158 0.00 0.00 0.00 3.77
2778 2889 3.066190 CCGTAGTGCTCGACCCCA 61.066 66.667 0.00 0.00 0.00 4.96
2811 2922 5.365403 TTTCTACTGTATTTTGCCCAACG 57.635 39.130 0.00 0.00 0.00 4.10
2814 2925 7.885922 TCATAGTTTTCTACTGTATTTTGCCCA 59.114 33.333 0.00 0.00 37.73 5.36
2816 2927 7.903431 CGTCATAGTTTTCTACTGTATTTTGCC 59.097 37.037 0.00 0.00 37.73 4.52
2825 2939 8.467402 ACATTCTTCGTCATAGTTTTCTACTG 57.533 34.615 0.00 0.00 37.73 2.74
2826 2940 9.490379 AAACATTCTTCGTCATAGTTTTCTACT 57.510 29.630 0.00 0.00 41.04 2.57
2841 2955 4.455877 AGCACCCTCTAAAAACATTCTTCG 59.544 41.667 0.00 0.00 0.00 3.79
2845 2959 5.003804 TCTGAGCACCCTCTAAAAACATTC 58.996 41.667 0.00 0.00 38.93 2.67
2847 2961 4.640771 TCTGAGCACCCTCTAAAAACAT 57.359 40.909 0.00 0.00 38.93 2.71
2849 2963 5.003804 TCAATCTGAGCACCCTCTAAAAAC 58.996 41.667 0.00 0.00 38.93 2.43
2921 3084 7.051623 TGCTTTTGAAGAACCTTAGTTGTAGA 58.948 34.615 0.00 0.00 35.94 2.59
2928 3091 3.975035 GCGTTGCTTTTGAAGAACCTTAG 59.025 43.478 0.00 0.00 0.00 2.18
2929 3092 3.378742 TGCGTTGCTTTTGAAGAACCTTA 59.621 39.130 0.00 0.00 0.00 2.69
2944 3107 2.352503 ATGTTTCCTTGATGCGTTGC 57.647 45.000 0.00 0.00 0.00 4.17
2950 3113 6.401047 AGATATGGCAATGTTTCCTTGATG 57.599 37.500 0.00 0.00 0.00 3.07
2958 3121 3.706086 GGGGTGAAGATATGGCAATGTTT 59.294 43.478 0.00 0.00 0.00 2.83
2983 3170 0.941463 AGTTTGCTCAGACGTGCTCG 60.941 55.000 6.63 6.63 43.34 5.03
2989 3176 2.354510 TGTTTTGGAGTTTGCTCAGACG 59.645 45.455 0.00 0.00 43.37 4.18
2992 3179 4.685924 ACATTGTTTTGGAGTTTGCTCAG 58.314 39.130 0.00 0.00 43.37 3.35
2994 3181 4.936891 AGACATTGTTTTGGAGTTTGCTC 58.063 39.130 0.00 0.00 40.93 4.26
3020 3238 4.537015 GTGTTTACTCATGGTGTCTTTGC 58.463 43.478 0.00 0.00 0.00 3.68
3028 3246 1.975680 AGGACGGTGTTTACTCATGGT 59.024 47.619 0.00 0.00 0.00 3.55
3031 3249 1.338769 GCCAGGACGGTGTTTACTCAT 60.339 52.381 0.00 0.00 36.97 2.90
3034 3252 0.470766 TTGCCAGGACGGTGTTTACT 59.529 50.000 0.00 0.00 36.97 2.24
3049 3267 3.499737 CGATGGTCGCACCTTGCC 61.500 66.667 6.83 0.00 41.12 4.52
3066 3284 1.834188 AAACCCATGGTCCGACATTC 58.166 50.000 11.73 0.00 33.12 2.67
3082 3300 4.340263 GTGTTGAACTTCGAGGTGAAAAC 58.660 43.478 0.00 7.14 35.79 2.43
3091 3309 1.345415 GGTAGGGGTGTTGAACTTCGA 59.655 52.381 0.00 0.00 0.00 3.71
3092 3310 1.071071 TGGTAGGGGTGTTGAACTTCG 59.929 52.381 0.00 0.00 0.00 3.79
3093 3311 2.501261 GTGGTAGGGGTGTTGAACTTC 58.499 52.381 0.00 0.00 0.00 3.01
3094 3312 1.144298 GGTGGTAGGGGTGTTGAACTT 59.856 52.381 0.00 0.00 0.00 2.66
3100 3318 1.458927 GCTTGGTGGTAGGGGTGTT 59.541 57.895 0.00 0.00 0.00 3.32
3199 3423 1.220206 CAGGTGAGCGATTGCCTCT 59.780 57.895 0.00 0.00 44.31 3.69
3209 3433 1.098050 CCAAAGGTATGCAGGTGAGC 58.902 55.000 0.00 0.00 0.00 4.26
3210 3434 1.098050 GCCAAAGGTATGCAGGTGAG 58.902 55.000 0.00 0.00 0.00 3.51
3222 3446 2.948115 TGGTGATATCCATGCCAAAGG 58.052 47.619 0.00 0.00 31.96 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.