Multiple sequence alignment - TraesCS5D01G165500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G165500 chr5D 100.000 4376 0 0 1 4376 257136342 257131967 0.000000e+00 8082.0
1 TraesCS5D01G165500 chr5D 92.857 56 4 0 1 56 240510420 240510475 1.010000e-11 82.4
2 TraesCS5D01G165500 chr5B 97.200 3572 78 13 809 4376 291389665 291386112 0.000000e+00 6023.0
3 TraesCS5D01G165500 chr5B 96.296 54 2 0 3 56 668108788 668108735 6.030000e-14 89.8
4 TraesCS5D01G165500 chr5B 88.372 43 5 0 561 603 616680839 616680797 8.000000e-03 52.8
5 TraesCS5D01G165500 chr5A 97.826 3220 68 2 1158 4376 341947333 341944115 0.000000e+00 5557.0
6 TraesCS5D01G165500 chr5A 96.560 407 12 2 751 1157 341948105 341947701 0.000000e+00 673.0
7 TraesCS5D01G165500 chr5A 91.667 60 4 1 1 60 502030411 502030353 1.010000e-11 82.4
8 TraesCS5D01G165500 chr5A 97.059 34 1 0 561 594 441180637 441180604 1.700000e-04 58.4
9 TraesCS5D01G165500 chr3A 96.429 56 2 0 1 56 749422470 749422415 4.660000e-15 93.5
10 TraesCS5D01G165500 chr3A 92.857 56 4 0 1 56 696270507 696270562 1.010000e-11 82.4
11 TraesCS5D01G165500 chr6D 93.443 61 3 1 1 60 255009427 255009367 6.030000e-14 89.8
12 TraesCS5D01G165500 chr1B 94.643 56 2 1 1 55 655594313 655594258 7.800000e-13 86.1
13 TraesCS5D01G165500 chr6B 92.857 56 4 0 1 56 677651424 677651479 1.010000e-11 82.4
14 TraesCS5D01G165500 chr6B 94.286 35 2 0 560 594 495981192 495981158 2.000000e-03 54.7
15 TraesCS5D01G165500 chr2D 91.667 60 4 1 1 59 560330785 560330726 1.010000e-11 82.4
16 TraesCS5D01G165500 chr7D 97.222 36 1 0 561 596 622126399 622126364 1.310000e-05 62.1
17 TraesCS5D01G165500 chr4A 78.505 107 14 7 499 596 608602078 608602184 1.310000e-05 62.1
18 TraesCS5D01G165500 chr1D 94.444 36 2 0 561 596 461083506 461083471 6.110000e-04 56.5
19 TraesCS5D01G165500 chr6A 94.286 35 2 0 561 595 496193669 496193703 2.000000e-03 54.7
20 TraesCS5D01G165500 chr4B 94.286 35 2 0 561 595 96634593 96634559 2.000000e-03 54.7
21 TraesCS5D01G165500 chr4D 100.000 28 0 0 561 588 439772026 439772053 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G165500 chr5D 257131967 257136342 4375 True 8082 8082 100.000 1 4376 1 chr5D.!!$R1 4375
1 TraesCS5D01G165500 chr5B 291386112 291389665 3553 True 6023 6023 97.200 809 4376 1 chr5B.!!$R1 3567
2 TraesCS5D01G165500 chr5A 341944115 341948105 3990 True 3115 5557 97.193 751 4376 2 chr5A.!!$R3 3625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 668 0.098025 GCCGTCTCAGTCTCTCGAAG 59.902 60.0 0.0 0.00 0.00 3.79 F
2169 2539 0.240411 CACTGCTCAAGGCTTTCTGC 59.760 55.0 0.0 2.86 42.39 4.26 F
2178 2548 0.322975 AGGCTTTCTGCGATGTCAGT 59.677 50.0 0.0 0.00 44.05 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2601 0.663153 GTGTGTTGTTGAGTCCAGGC 59.337 55.0 0.0 0.0 0.0 4.85 R
3123 3493 0.033366 TAAGAAGAGCACAGCACGCA 59.967 50.0 0.0 0.0 0.0 5.24 R
3950 4320 1.425412 ATTGTAAGTGTCGTGCGGTC 58.575 50.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.877866 AGTCTATTCCATCCGATCGGT 58.122 47.619 32.15 17.67 36.47 4.69
21 22 3.231818 AGTCTATTCCATCCGATCGGTT 58.768 45.455 32.15 22.54 36.47 4.44
22 23 3.641906 AGTCTATTCCATCCGATCGGTTT 59.358 43.478 32.15 18.92 36.47 3.27
23 24 4.101119 AGTCTATTCCATCCGATCGGTTTT 59.899 41.667 32.15 16.43 36.47 2.43
24 25 4.814771 GTCTATTCCATCCGATCGGTTTTT 59.185 41.667 32.15 16.07 36.47 1.94
44 45 6.875948 TTTTTAGTTGCATTGACTAGAGCA 57.124 33.333 0.00 0.00 31.74 4.26
45 46 7.452880 TTTTTAGTTGCATTGACTAGAGCAT 57.547 32.000 0.00 0.00 36.80 3.79
46 47 6.426980 TTTAGTTGCATTGACTAGAGCATG 57.573 37.500 0.00 0.00 36.80 4.06
47 48 2.681848 AGTTGCATTGACTAGAGCATGC 59.318 45.455 10.51 10.51 36.80 4.06
48 49 2.406596 TGCATTGACTAGAGCATGCA 57.593 45.000 21.98 17.72 41.91 3.96
49 50 2.011947 TGCATTGACTAGAGCATGCAC 58.988 47.619 21.98 14.59 39.69 4.57
50 51 2.286872 GCATTGACTAGAGCATGCACT 58.713 47.619 21.45 21.45 35.35 4.40
51 52 2.681848 GCATTGACTAGAGCATGCACTT 59.318 45.455 22.83 5.97 35.35 3.16
52 53 3.242673 GCATTGACTAGAGCATGCACTTC 60.243 47.826 22.83 15.25 35.35 3.01
53 54 3.969287 TTGACTAGAGCATGCACTTCT 57.031 42.857 22.83 17.00 0.00 2.85
54 55 5.354767 CATTGACTAGAGCATGCACTTCTA 58.645 41.667 22.83 17.21 0.00 2.10
55 56 4.377839 TGACTAGAGCATGCACTTCTAC 57.622 45.455 22.83 12.21 0.00 2.59
56 57 3.181496 TGACTAGAGCATGCACTTCTACG 60.181 47.826 22.83 14.01 0.00 3.51
57 58 3.017442 ACTAGAGCATGCACTTCTACGA 58.983 45.455 22.83 2.96 0.00 3.43
58 59 2.285827 AGAGCATGCACTTCTACGAC 57.714 50.000 21.98 0.00 0.00 4.34
59 60 1.134965 AGAGCATGCACTTCTACGACC 60.135 52.381 21.98 0.00 0.00 4.79
60 61 0.608130 AGCATGCACTTCTACGACCA 59.392 50.000 21.98 0.00 0.00 4.02
61 62 0.721718 GCATGCACTTCTACGACCAC 59.278 55.000 14.21 0.00 0.00 4.16
62 63 1.939381 GCATGCACTTCTACGACCACA 60.939 52.381 14.21 0.00 0.00 4.17
63 64 2.412870 CATGCACTTCTACGACCACAA 58.587 47.619 0.00 0.00 0.00 3.33
64 65 2.831685 TGCACTTCTACGACCACAAT 57.168 45.000 0.00 0.00 0.00 2.71
65 66 2.412870 TGCACTTCTACGACCACAATG 58.587 47.619 0.00 0.00 0.00 2.82
66 67 1.128692 GCACTTCTACGACCACAATGC 59.871 52.381 0.00 0.00 0.00 3.56
67 68 1.732259 CACTTCTACGACCACAATGCC 59.268 52.381 0.00 0.00 0.00 4.40
68 69 1.346395 ACTTCTACGACCACAATGCCA 59.654 47.619 0.00 0.00 0.00 4.92
69 70 2.224426 ACTTCTACGACCACAATGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
70 71 2.779755 TCTACGACCACAATGCCAAT 57.220 45.000 0.00 0.00 0.00 3.16
71 72 2.355197 TCTACGACCACAATGCCAATG 58.645 47.619 0.00 0.00 0.00 2.82
72 73 0.808125 TACGACCACAATGCCAATGC 59.192 50.000 0.00 0.00 38.26 3.56
73 74 1.153784 CGACCACAATGCCAATGCC 60.154 57.895 0.00 0.00 36.33 4.40
74 75 1.218854 GACCACAATGCCAATGCCC 59.781 57.895 0.00 0.00 36.33 5.36
75 76 2.184836 CCACAATGCCAATGCCCG 59.815 61.111 0.00 0.00 36.33 6.13
76 77 2.509786 CACAATGCCAATGCCCGC 60.510 61.111 0.00 0.00 36.33 6.13
77 78 3.773404 ACAATGCCAATGCCCGCC 61.773 61.111 0.00 0.00 36.33 6.13
78 79 4.534141 CAATGCCAATGCCCGCCC 62.534 66.667 0.00 0.00 36.33 6.13
105 106 4.552365 CCCGGCCATGCATCTCGT 62.552 66.667 2.24 0.00 0.00 4.18
106 107 2.969238 CCGGCCATGCATCTCGTC 60.969 66.667 2.24 0.00 0.00 4.20
107 108 3.333189 CGGCCATGCATCTCGTCG 61.333 66.667 2.24 0.00 0.00 5.12
108 109 2.106938 GGCCATGCATCTCGTCGA 59.893 61.111 0.00 0.00 0.00 4.20
109 110 1.301244 GGCCATGCATCTCGTCGAT 60.301 57.895 0.00 0.00 0.00 3.59
115 116 4.812814 CATCTCGTCGATGCCACA 57.187 55.556 0.00 0.00 42.75 4.17
116 117 2.291843 CATCTCGTCGATGCCACAC 58.708 57.895 0.00 0.00 42.75 3.82
117 118 1.141881 ATCTCGTCGATGCCACACC 59.858 57.895 0.00 0.00 0.00 4.16
118 119 2.298158 ATCTCGTCGATGCCACACCC 62.298 60.000 0.00 0.00 0.00 4.61
119 120 2.994995 TCGTCGATGCCACACCCT 60.995 61.111 0.00 0.00 0.00 4.34
120 121 1.663379 CTCGTCGATGCCACACCCTA 61.663 60.000 0.00 0.00 0.00 3.53
121 122 1.518572 CGTCGATGCCACACCCTAC 60.519 63.158 0.00 0.00 0.00 3.18
122 123 1.898154 GTCGATGCCACACCCTACT 59.102 57.895 0.00 0.00 0.00 2.57
123 124 0.179108 GTCGATGCCACACCCTACTC 60.179 60.000 0.00 0.00 0.00 2.59
124 125 1.144057 CGATGCCACACCCTACTCC 59.856 63.158 0.00 0.00 0.00 3.85
125 126 1.613317 CGATGCCACACCCTACTCCA 61.613 60.000 0.00 0.00 0.00 3.86
126 127 0.179000 GATGCCACACCCTACTCCAG 59.821 60.000 0.00 0.00 0.00 3.86
127 128 0.547712 ATGCCACACCCTACTCCAGT 60.548 55.000 0.00 0.00 0.00 4.00
128 129 1.296715 GCCACACCCTACTCCAGTG 59.703 63.158 0.00 0.00 37.53 3.66
129 130 1.481056 GCCACACCCTACTCCAGTGT 61.481 60.000 0.00 0.00 45.31 3.55
130 131 0.608640 CCACACCCTACTCCAGTGTC 59.391 60.000 0.00 0.00 42.65 3.67
131 132 0.243907 CACACCCTACTCCAGTGTCG 59.756 60.000 0.00 0.00 42.65 4.35
132 133 1.215647 CACCCTACTCCAGTGTCGC 59.784 63.158 0.00 0.00 0.00 5.19
133 134 2.341101 ACCCTACTCCAGTGTCGCG 61.341 63.158 0.00 0.00 0.00 5.87
134 135 2.202623 CCTACTCCAGTGTCGCGC 60.203 66.667 0.00 0.00 0.00 6.86
135 136 2.202623 CTACTCCAGTGTCGCGCC 60.203 66.667 0.00 0.00 0.00 6.53
136 137 3.701604 CTACTCCAGTGTCGCGCCC 62.702 68.421 0.00 0.00 0.00 6.13
150 151 4.632974 GCCCCTGCCGAGCCATAG 62.633 72.222 0.00 0.00 0.00 2.23
151 152 4.632974 CCCCTGCCGAGCCATAGC 62.633 72.222 0.00 0.00 40.32 2.97
152 153 3.865383 CCCTGCCGAGCCATAGCA 61.865 66.667 0.00 0.00 43.56 3.49
153 154 2.429058 CCTGCCGAGCCATAGCAT 59.571 61.111 0.00 0.00 43.56 3.79
154 155 1.670406 CCTGCCGAGCCATAGCATC 60.670 63.158 0.00 0.00 43.56 3.91
155 156 1.370437 CTGCCGAGCCATAGCATCT 59.630 57.895 0.00 0.00 43.56 2.90
156 157 0.250209 CTGCCGAGCCATAGCATCTT 60.250 55.000 0.00 0.00 43.56 2.40
157 158 0.533531 TGCCGAGCCATAGCATCTTG 60.534 55.000 0.00 0.00 43.56 3.02
158 159 0.533755 GCCGAGCCATAGCATCTTGT 60.534 55.000 0.00 0.00 43.56 3.16
159 160 1.224075 CCGAGCCATAGCATCTTGTG 58.776 55.000 0.00 0.00 43.56 3.33
168 169 4.615901 CATCTTGTGCTACCGCCA 57.384 55.556 0.00 0.00 34.43 5.69
169 170 2.089854 CATCTTGTGCTACCGCCAC 58.910 57.895 0.00 0.00 34.43 5.01
170 171 0.673333 CATCTTGTGCTACCGCCACA 60.673 55.000 0.00 0.00 34.43 4.17
171 172 0.673644 ATCTTGTGCTACCGCCACAC 60.674 55.000 0.00 0.00 34.43 3.82
172 173 2.663520 TTGTGCTACCGCCACACG 60.664 61.111 0.00 0.00 43.15 4.49
183 184 3.636231 CCACACGCCAGGGAGGAA 61.636 66.667 0.00 0.00 41.22 3.36
184 185 2.046892 CACACGCCAGGGAGGAAG 60.047 66.667 0.00 0.00 41.22 3.46
185 186 3.322466 ACACGCCAGGGAGGAAGG 61.322 66.667 0.00 0.00 41.22 3.46
186 187 3.003173 CACGCCAGGGAGGAAGGA 61.003 66.667 0.00 0.00 41.22 3.36
187 188 2.685380 ACGCCAGGGAGGAAGGAG 60.685 66.667 0.00 0.00 41.22 3.69
188 189 3.474570 CGCCAGGGAGGAAGGAGG 61.475 72.222 0.00 0.00 41.22 4.30
189 190 2.041265 GCCAGGGAGGAAGGAGGA 59.959 66.667 0.00 0.00 41.22 3.71
190 191 2.069430 GCCAGGGAGGAAGGAGGAG 61.069 68.421 0.00 0.00 41.22 3.69
191 192 2.069430 CCAGGGAGGAAGGAGGAGC 61.069 68.421 0.00 0.00 41.22 4.70
192 193 2.069430 CAGGGAGGAAGGAGGAGCC 61.069 68.421 0.00 0.00 0.00 4.70
193 194 2.770475 GGGAGGAAGGAGGAGCCC 60.770 72.222 0.00 0.00 37.37 5.19
194 195 2.770475 GGAGGAAGGAGGAGCCCC 60.770 72.222 0.00 0.00 37.37 5.80
195 196 3.157949 GAGGAAGGAGGAGCCCCG 61.158 72.222 0.00 0.00 37.37 5.73
198 199 3.717294 GAAGGAGGAGCCCCGCAA 61.717 66.667 0.00 0.00 37.37 4.85
199 200 3.978571 GAAGGAGGAGCCCCGCAAC 62.979 68.421 0.00 0.00 37.37 4.17
210 211 3.726517 CCGCAACCGTGGAAGCTG 61.727 66.667 0.00 0.00 46.55 4.24
211 212 4.389576 CGCAACCGTGGAAGCTGC 62.390 66.667 0.00 0.00 0.00 5.25
212 213 4.043200 GCAACCGTGGAAGCTGCC 62.043 66.667 2.64 2.64 0.00 4.85
213 214 3.726517 CAACCGTGGAAGCTGCCG 61.727 66.667 6.16 0.00 0.00 5.69
260 261 4.222847 CGGGAGCTAGGGTTCGCC 62.223 72.222 0.00 0.00 33.40 5.54
271 272 4.309950 GTTCGCCCCGACACCACT 62.310 66.667 0.00 0.00 34.89 4.00
272 273 4.308458 TTCGCCCCGACACCACTG 62.308 66.667 0.00 0.00 34.89 3.66
276 277 4.263572 CCCCGACACCACTGGCAA 62.264 66.667 0.00 0.00 0.00 4.52
277 278 2.669569 CCCGACACCACTGGCAAG 60.670 66.667 0.00 0.00 0.00 4.01
278 279 2.425592 CCGACACCACTGGCAAGA 59.574 61.111 0.00 0.00 0.00 3.02
279 280 1.669115 CCGACACCACTGGCAAGAG 60.669 63.158 0.00 0.00 0.00 2.85
280 281 1.069765 CGACACCACTGGCAAGAGT 59.930 57.895 0.00 0.00 0.00 3.24
281 282 1.224069 CGACACCACTGGCAAGAGTG 61.224 60.000 12.62 12.62 42.68 3.51
282 283 0.106708 GACACCACTGGCAAGAGTGA 59.893 55.000 18.84 0.00 45.39 3.41
283 284 0.179045 ACACCACTGGCAAGAGTGAC 60.179 55.000 18.84 0.00 45.39 3.67
284 285 0.179048 CACCACTGGCAAGAGTGACA 60.179 55.000 9.60 0.00 45.39 3.58
285 286 0.179045 ACCACTGGCAAGAGTGACAC 60.179 55.000 6.91 0.00 45.39 3.67
286 287 1.224069 CCACTGGCAAGAGTGACACG 61.224 60.000 6.91 0.00 45.39 4.49
287 288 1.595382 ACTGGCAAGAGTGACACGC 60.595 57.895 0.00 0.39 38.09 5.34
288 289 2.280797 TGGCAAGAGTGACACGCC 60.281 61.111 13.53 13.53 38.09 5.68
289 290 3.050275 GGCAAGAGTGACACGCCC 61.050 66.667 10.24 0.00 36.73 6.13
290 291 3.414700 GCAAGAGTGACACGCCCG 61.415 66.667 5.64 0.00 0.00 6.13
291 292 2.338620 CAAGAGTGACACGCCCGA 59.661 61.111 5.64 0.00 0.00 5.14
292 293 1.300620 CAAGAGTGACACGCCCGAA 60.301 57.895 5.64 0.00 0.00 4.30
293 294 1.006102 AAGAGTGACACGCCCGAAG 60.006 57.895 5.64 0.00 0.00 3.79
294 295 1.745320 AAGAGTGACACGCCCGAAGT 61.745 55.000 5.64 0.00 0.00 3.01
295 296 2.022129 GAGTGACACGCCCGAAGTG 61.022 63.158 0.00 3.89 44.57 3.16
296 297 2.028484 GTGACACGCCCGAAGTGA 59.972 61.111 10.87 0.00 41.83 3.41
297 298 1.374252 GTGACACGCCCGAAGTGAT 60.374 57.895 10.87 0.00 41.83 3.06
298 299 0.949105 GTGACACGCCCGAAGTGATT 60.949 55.000 10.87 0.00 41.83 2.57
299 300 0.250124 TGACACGCCCGAAGTGATTT 60.250 50.000 10.87 0.00 41.83 2.17
300 301 0.872388 GACACGCCCGAAGTGATTTT 59.128 50.000 10.87 0.00 41.83 1.82
301 302 0.591170 ACACGCCCGAAGTGATTTTG 59.409 50.000 10.87 0.00 41.83 2.44
302 303 0.871722 CACGCCCGAAGTGATTTTGA 59.128 50.000 0.00 0.00 41.83 2.69
303 304 1.468520 CACGCCCGAAGTGATTTTGAT 59.531 47.619 0.00 0.00 41.83 2.57
304 305 2.675844 CACGCCCGAAGTGATTTTGATA 59.324 45.455 0.00 0.00 41.83 2.15
305 306 2.936498 ACGCCCGAAGTGATTTTGATAG 59.064 45.455 0.00 0.00 0.00 2.08
306 307 2.287915 CGCCCGAAGTGATTTTGATAGG 59.712 50.000 0.00 0.00 0.00 2.57
307 308 3.279434 GCCCGAAGTGATTTTGATAGGT 58.721 45.455 0.00 0.00 0.00 3.08
308 309 3.065371 GCCCGAAGTGATTTTGATAGGTG 59.935 47.826 0.00 0.00 0.00 4.00
309 310 4.261801 CCCGAAGTGATTTTGATAGGTGT 58.738 43.478 0.00 0.00 0.00 4.16
310 311 4.700213 CCCGAAGTGATTTTGATAGGTGTT 59.300 41.667 0.00 0.00 0.00 3.32
311 312 5.183140 CCCGAAGTGATTTTGATAGGTGTTT 59.817 40.000 0.00 0.00 0.00 2.83
312 313 6.294508 CCCGAAGTGATTTTGATAGGTGTTTT 60.295 38.462 0.00 0.00 0.00 2.43
313 314 7.145323 CCGAAGTGATTTTGATAGGTGTTTTT 58.855 34.615 0.00 0.00 0.00 1.94
345 346 3.372660 GAGAACTTCTCTCGTGGTGTT 57.627 47.619 11.06 0.00 41.34 3.32
346 347 3.718815 GAGAACTTCTCTCGTGGTGTTT 58.281 45.455 11.06 0.00 41.34 2.83
347 348 4.120589 GAGAACTTCTCTCGTGGTGTTTT 58.879 43.478 11.06 0.00 41.34 2.43
348 349 4.120589 AGAACTTCTCTCGTGGTGTTTTC 58.879 43.478 0.00 0.00 0.00 2.29
349 350 2.470821 ACTTCTCTCGTGGTGTTTTCG 58.529 47.619 0.00 0.00 0.00 3.46
350 351 2.159142 ACTTCTCTCGTGGTGTTTTCGT 60.159 45.455 0.00 0.00 0.00 3.85
351 352 3.067180 ACTTCTCTCGTGGTGTTTTCGTA 59.933 43.478 0.00 0.00 0.00 3.43
352 353 3.928727 TCTCTCGTGGTGTTTTCGTAT 57.071 42.857 0.00 0.00 0.00 3.06
353 354 5.048504 ACTTCTCTCGTGGTGTTTTCGTATA 60.049 40.000 0.00 0.00 0.00 1.47
354 355 5.571784 TCTCTCGTGGTGTTTTCGTATAT 57.428 39.130 0.00 0.00 0.00 0.86
355 356 5.575957 TCTCTCGTGGTGTTTTCGTATATC 58.424 41.667 0.00 0.00 0.00 1.63
356 357 5.356190 TCTCTCGTGGTGTTTTCGTATATCT 59.644 40.000 0.00 0.00 0.00 1.98
357 358 6.539826 TCTCTCGTGGTGTTTTCGTATATCTA 59.460 38.462 0.00 0.00 0.00 1.98
358 359 6.722301 TCTCGTGGTGTTTTCGTATATCTAG 58.278 40.000 0.00 0.00 0.00 2.43
359 360 6.539826 TCTCGTGGTGTTTTCGTATATCTAGA 59.460 38.462 0.00 0.00 0.00 2.43
360 361 7.066163 TCTCGTGGTGTTTTCGTATATCTAGAA 59.934 37.037 0.00 0.00 0.00 2.10
361 362 7.709947 TCGTGGTGTTTTCGTATATCTAGAAT 58.290 34.615 0.00 0.00 0.00 2.40
362 363 8.192774 TCGTGGTGTTTTCGTATATCTAGAATT 58.807 33.333 0.00 0.00 0.00 2.17
363 364 8.477709 CGTGGTGTTTTCGTATATCTAGAATTC 58.522 37.037 0.00 0.00 0.00 2.17
364 365 9.309516 GTGGTGTTTTCGTATATCTAGAATTCA 57.690 33.333 8.44 0.00 0.00 2.57
382 383 8.851541 AGAATTCATTTTTATTTGGCATGTGT 57.148 26.923 8.44 0.00 0.00 3.72
383 384 8.938906 AGAATTCATTTTTATTTGGCATGTGTC 58.061 29.630 8.44 0.00 0.00 3.67
384 385 6.702972 TTCATTTTTATTTGGCATGTGTCG 57.297 33.333 0.00 0.00 0.00 4.35
385 386 5.777802 TCATTTTTATTTGGCATGTGTCGT 58.222 33.333 0.00 0.00 0.00 4.34
386 387 6.219473 TCATTTTTATTTGGCATGTGTCGTT 58.781 32.000 0.00 0.00 0.00 3.85
387 388 5.896922 TTTTTATTTGGCATGTGTCGTTG 57.103 34.783 0.00 0.00 0.00 4.10
388 389 3.567576 TTATTTGGCATGTGTCGTTGG 57.432 42.857 0.00 0.00 0.00 3.77
389 390 1.327303 ATTTGGCATGTGTCGTTGGT 58.673 45.000 0.00 0.00 0.00 3.67
390 391 0.383590 TTTGGCATGTGTCGTTGGTG 59.616 50.000 0.00 0.00 0.00 4.17
391 392 1.451337 TTGGCATGTGTCGTTGGTGG 61.451 55.000 0.00 0.00 0.00 4.61
392 393 1.896660 GGCATGTGTCGTTGGTGGT 60.897 57.895 0.00 0.00 0.00 4.16
393 394 1.452145 GGCATGTGTCGTTGGTGGTT 61.452 55.000 0.00 0.00 0.00 3.67
394 395 0.317770 GCATGTGTCGTTGGTGGTTG 60.318 55.000 0.00 0.00 0.00 3.77
395 396 0.317770 CATGTGTCGTTGGTGGTTGC 60.318 55.000 0.00 0.00 0.00 4.17
396 397 1.452145 ATGTGTCGTTGGTGGTTGCC 61.452 55.000 0.00 0.00 0.00 4.52
397 398 2.115911 GTGTCGTTGGTGGTTGCCA 61.116 57.895 0.00 0.00 36.62 4.92
398 399 1.821759 TGTCGTTGGTGGTTGCCAG 60.822 57.895 0.00 0.00 40.01 4.85
399 400 1.525077 GTCGTTGGTGGTTGCCAGA 60.525 57.895 0.00 0.00 40.01 3.86
400 401 0.889186 GTCGTTGGTGGTTGCCAGAT 60.889 55.000 0.00 0.00 40.01 2.90
401 402 0.888736 TCGTTGGTGGTTGCCAGATG 60.889 55.000 0.00 0.00 40.01 2.90
402 403 1.865788 CGTTGGTGGTTGCCAGATGG 61.866 60.000 0.00 0.00 40.01 3.51
403 404 0.539438 GTTGGTGGTTGCCAGATGGA 60.539 55.000 2.18 0.00 40.01 3.41
404 405 0.409092 TTGGTGGTTGCCAGATGGAT 59.591 50.000 2.18 0.00 40.01 3.41
405 406 0.409092 TGGTGGTTGCCAGATGGATT 59.591 50.000 2.18 0.00 37.39 3.01
406 407 1.203162 TGGTGGTTGCCAGATGGATTT 60.203 47.619 2.18 0.00 37.39 2.17
407 408 1.901833 GGTGGTTGCCAGATGGATTTT 59.098 47.619 2.18 0.00 37.39 1.82
408 409 2.302733 GGTGGTTGCCAGATGGATTTTT 59.697 45.455 2.18 0.00 37.39 1.94
466 467 9.744468 TCTTTTTGAGTAGGCTTAAATTTTCAC 57.256 29.630 0.00 0.00 31.62 3.18
467 468 8.568732 TTTTTGAGTAGGCTTAAATTTTCACG 57.431 30.769 0.00 0.00 31.62 4.35
468 469 7.499321 TTTGAGTAGGCTTAAATTTTCACGA 57.501 32.000 0.00 0.00 0.00 4.35
469 470 7.681939 TTGAGTAGGCTTAAATTTTCACGAT 57.318 32.000 0.00 0.00 0.00 3.73
470 471 7.072177 TGAGTAGGCTTAAATTTTCACGATG 57.928 36.000 0.00 0.00 0.00 3.84
471 472 6.093495 TGAGTAGGCTTAAATTTTCACGATGG 59.907 38.462 0.00 0.00 0.00 3.51
472 473 4.110036 AGGCTTAAATTTTCACGATGGC 57.890 40.909 0.00 0.00 0.00 4.40
473 474 3.509575 AGGCTTAAATTTTCACGATGGCA 59.490 39.130 0.00 0.00 0.00 4.92
474 475 4.021544 AGGCTTAAATTTTCACGATGGCAA 60.022 37.500 0.00 0.00 0.00 4.52
475 476 4.327087 GGCTTAAATTTTCACGATGGCAAG 59.673 41.667 0.00 0.00 0.00 4.01
476 477 4.201618 GCTTAAATTTTCACGATGGCAAGC 60.202 41.667 0.00 0.00 0.00 4.01
477 478 3.383620 AAATTTTCACGATGGCAAGCA 57.616 38.095 0.00 0.00 0.00 3.91
478 479 3.598019 AATTTTCACGATGGCAAGCAT 57.402 38.095 0.00 0.00 0.00 3.79
479 480 2.350899 TTTTCACGATGGCAAGCATG 57.649 45.000 0.00 0.00 0.00 4.06
480 481 1.532523 TTTCACGATGGCAAGCATGA 58.467 45.000 0.00 0.00 0.00 3.07
481 482 1.532523 TTCACGATGGCAAGCATGAA 58.467 45.000 0.00 0.00 0.00 2.57
482 483 1.753930 TCACGATGGCAAGCATGAAT 58.246 45.000 0.00 0.00 0.00 2.57
483 484 1.402613 TCACGATGGCAAGCATGAATG 59.597 47.619 0.00 0.00 0.00 2.67
484 485 1.133598 CACGATGGCAAGCATGAATGT 59.866 47.619 0.00 0.00 0.00 2.71
485 486 1.133598 ACGATGGCAAGCATGAATGTG 59.866 47.619 0.00 0.00 0.00 3.21
486 487 1.402613 CGATGGCAAGCATGAATGTGA 59.597 47.619 0.00 0.00 0.00 3.58
487 488 2.540973 CGATGGCAAGCATGAATGTGAG 60.541 50.000 0.00 0.00 0.00 3.51
488 489 1.913778 TGGCAAGCATGAATGTGAGT 58.086 45.000 0.00 0.00 0.00 3.41
489 490 3.070476 TGGCAAGCATGAATGTGAGTA 57.930 42.857 0.00 0.00 0.00 2.59
490 491 3.419943 TGGCAAGCATGAATGTGAGTAA 58.580 40.909 0.00 0.00 0.00 2.24
491 492 3.825585 TGGCAAGCATGAATGTGAGTAAA 59.174 39.130 0.00 0.00 0.00 2.01
492 493 4.463539 TGGCAAGCATGAATGTGAGTAAAT 59.536 37.500 0.00 0.00 0.00 1.40
493 494 5.651576 TGGCAAGCATGAATGTGAGTAAATA 59.348 36.000 0.00 0.00 0.00 1.40
494 495 6.152492 TGGCAAGCATGAATGTGAGTAAATAA 59.848 34.615 0.00 0.00 0.00 1.40
495 496 7.035004 GGCAAGCATGAATGTGAGTAAATAAA 58.965 34.615 0.00 0.00 0.00 1.40
496 497 7.707893 GGCAAGCATGAATGTGAGTAAATAAAT 59.292 33.333 0.00 0.00 0.00 1.40
497 498 9.734620 GCAAGCATGAATGTGAGTAAATAAATA 57.265 29.630 0.00 0.00 0.00 1.40
517 518 7.516198 AAATATGTGATTGAATGGTAGGAGC 57.484 36.000 0.00 0.00 0.00 4.70
518 519 3.998913 TGTGATTGAATGGTAGGAGCA 57.001 42.857 0.00 0.00 0.00 4.26
519 520 3.609853 TGTGATTGAATGGTAGGAGCAC 58.390 45.455 0.00 0.00 0.00 4.40
520 521 3.008923 TGTGATTGAATGGTAGGAGCACA 59.991 43.478 0.00 0.00 0.00 4.57
521 522 3.624861 GTGATTGAATGGTAGGAGCACAG 59.375 47.826 0.00 0.00 0.00 3.66
522 523 3.264193 TGATTGAATGGTAGGAGCACAGT 59.736 43.478 0.00 0.00 0.00 3.55
523 524 2.768253 TGAATGGTAGGAGCACAGTG 57.232 50.000 0.00 0.00 0.00 3.66
524 525 2.256306 TGAATGGTAGGAGCACAGTGA 58.744 47.619 4.15 0.00 0.00 3.41
525 526 2.840038 TGAATGGTAGGAGCACAGTGAT 59.160 45.455 4.15 0.00 0.00 3.06
526 527 4.030216 TGAATGGTAGGAGCACAGTGATA 58.970 43.478 4.15 0.00 0.00 2.15
527 528 4.655649 TGAATGGTAGGAGCACAGTGATAT 59.344 41.667 4.15 0.00 0.00 1.63
528 529 5.130975 TGAATGGTAGGAGCACAGTGATATT 59.869 40.000 4.15 0.00 0.00 1.28
529 530 5.636903 ATGGTAGGAGCACAGTGATATTT 57.363 39.130 4.15 0.00 0.00 1.40
530 531 5.023533 TGGTAGGAGCACAGTGATATTTC 57.976 43.478 4.15 0.00 0.00 2.17
531 532 4.469586 TGGTAGGAGCACAGTGATATTTCA 59.530 41.667 4.15 0.00 0.00 2.69
532 533 5.053145 GGTAGGAGCACAGTGATATTTCAG 58.947 45.833 4.15 0.00 30.85 3.02
533 534 3.539604 AGGAGCACAGTGATATTTCAGC 58.460 45.455 4.15 0.00 30.85 4.26
534 535 3.199508 AGGAGCACAGTGATATTTCAGCT 59.800 43.478 4.15 0.00 33.69 4.24
535 536 3.559242 GGAGCACAGTGATATTTCAGCTC 59.441 47.826 4.15 13.32 41.89 4.09
536 537 4.186926 GAGCACAGTGATATTTCAGCTCA 58.813 43.478 15.51 0.00 42.06 4.26
537 538 3.937706 AGCACAGTGATATTTCAGCTCAC 59.062 43.478 4.15 0.00 39.63 3.51
538 539 3.064545 GCACAGTGATATTTCAGCTCACC 59.935 47.826 4.15 0.00 40.08 4.02
539 540 4.256110 CACAGTGATATTTCAGCTCACCA 58.744 43.478 0.00 0.00 40.08 4.17
540 541 4.331992 CACAGTGATATTTCAGCTCACCAG 59.668 45.833 0.00 0.00 40.08 4.00
541 542 4.223700 ACAGTGATATTTCAGCTCACCAGA 59.776 41.667 0.00 0.00 40.08 3.86
542 543 4.569966 CAGTGATATTTCAGCTCACCAGAC 59.430 45.833 0.00 0.00 40.08 3.51
543 544 4.469227 AGTGATATTTCAGCTCACCAGACT 59.531 41.667 0.00 0.00 40.08 3.24
544 545 5.046014 AGTGATATTTCAGCTCACCAGACTT 60.046 40.000 0.00 0.00 40.08 3.01
545 546 5.645497 GTGATATTTCAGCTCACCAGACTTT 59.355 40.000 0.00 0.00 34.55 2.66
546 547 6.818644 GTGATATTTCAGCTCACCAGACTTTA 59.181 38.462 0.00 0.00 34.55 1.85
547 548 7.334421 GTGATATTTCAGCTCACCAGACTTTAA 59.666 37.037 0.00 0.00 34.55 1.52
548 549 7.550551 TGATATTTCAGCTCACCAGACTTTAAG 59.449 37.037 0.00 0.00 0.00 1.85
549 550 4.689612 TTCAGCTCACCAGACTTTAAGT 57.310 40.909 0.00 0.00 0.00 2.24
550 551 4.689612 TCAGCTCACCAGACTTTAAGTT 57.310 40.909 0.00 0.00 0.00 2.66
551 552 4.632153 TCAGCTCACCAGACTTTAAGTTC 58.368 43.478 0.00 0.00 0.00 3.01
552 553 4.345257 TCAGCTCACCAGACTTTAAGTTCT 59.655 41.667 0.00 0.00 0.00 3.01
553 554 5.538813 TCAGCTCACCAGACTTTAAGTTCTA 59.461 40.000 0.00 0.00 0.00 2.10
554 555 6.041637 TCAGCTCACCAGACTTTAAGTTCTAA 59.958 38.462 0.00 0.00 0.00 2.10
555 556 6.706270 CAGCTCACCAGACTTTAAGTTCTAAA 59.294 38.462 0.00 0.00 0.00 1.85
556 557 7.389053 CAGCTCACCAGACTTTAAGTTCTAAAT 59.611 37.037 0.00 0.00 0.00 1.40
557 558 7.389053 AGCTCACCAGACTTTAAGTTCTAAATG 59.611 37.037 0.00 0.00 0.00 2.32
558 559 7.387948 GCTCACCAGACTTTAAGTTCTAAATGA 59.612 37.037 0.00 0.00 0.00 2.57
559 560 9.273016 CTCACCAGACTTTAAGTTCTAAATGAA 57.727 33.333 0.00 0.00 0.00 2.57
560 561 9.273016 TCACCAGACTTTAAGTTCTAAATGAAG 57.727 33.333 0.00 0.00 35.01 3.02
561 562 9.057089 CACCAGACTTTAAGTTCTAAATGAAGT 57.943 33.333 0.00 0.00 39.83 3.01
562 563 9.057089 ACCAGACTTTAAGTTCTAAATGAAGTG 57.943 33.333 0.00 0.00 38.27 3.16
563 564 8.017946 CCAGACTTTAAGTTCTAAATGAAGTGC 58.982 37.037 0.00 0.00 38.27 4.40
564 565 8.778358 CAGACTTTAAGTTCTAAATGAAGTGCT 58.222 33.333 0.00 0.00 38.27 4.40
565 566 8.994170 AGACTTTAAGTTCTAAATGAAGTGCTC 58.006 33.333 0.00 0.00 38.27 4.26
566 567 7.797819 ACTTTAAGTTCTAAATGAAGTGCTCG 58.202 34.615 0.00 0.00 38.27 5.03
567 568 7.441458 ACTTTAAGTTCTAAATGAAGTGCTCGT 59.559 33.333 0.00 0.00 38.27 4.18
568 569 8.821147 TTTAAGTTCTAAATGAAGTGCTCGTA 57.179 30.769 0.00 0.00 38.27 3.43
569 570 8.997621 TTAAGTTCTAAATGAAGTGCTCGTAT 57.002 30.769 0.00 0.00 38.27 3.06
570 571 7.907214 AAGTTCTAAATGAAGTGCTCGTATT 57.093 32.000 0.00 0.00 38.27 1.89
571 572 7.907214 AGTTCTAAATGAAGTGCTCGTATTT 57.093 32.000 0.00 0.00 36.99 1.40
572 573 8.324163 AGTTCTAAATGAAGTGCTCGTATTTT 57.676 30.769 0.00 0.00 36.99 1.82
573 574 8.784043 AGTTCTAAATGAAGTGCTCGTATTTTT 58.216 29.630 0.00 0.00 36.99 1.94
574 575 9.052080 GTTCTAAATGAAGTGCTCGTATTTTTC 57.948 33.333 0.00 0.00 35.01 2.29
575 576 8.547967 TCTAAATGAAGTGCTCGTATTTTTCT 57.452 30.769 0.00 0.00 0.00 2.52
576 577 8.443160 TCTAAATGAAGTGCTCGTATTTTTCTG 58.557 33.333 0.00 0.00 0.00 3.02
577 578 6.801539 AATGAAGTGCTCGTATTTTTCTGA 57.198 33.333 0.00 0.00 0.00 3.27
578 579 6.801539 ATGAAGTGCTCGTATTTTTCTGAA 57.198 33.333 0.00 0.00 0.00 3.02
579 580 6.801539 TGAAGTGCTCGTATTTTTCTGAAT 57.198 33.333 0.00 0.00 0.00 2.57
580 581 7.202016 TGAAGTGCTCGTATTTTTCTGAATT 57.798 32.000 0.00 0.00 0.00 2.17
581 582 7.648142 TGAAGTGCTCGTATTTTTCTGAATTT 58.352 30.769 0.00 0.00 0.00 1.82
582 583 8.779303 TGAAGTGCTCGTATTTTTCTGAATTTA 58.221 29.630 0.00 0.00 0.00 1.40
583 584 9.774742 GAAGTGCTCGTATTTTTCTGAATTTAT 57.225 29.630 0.00 0.00 0.00 1.40
616 617 8.745464 CTTCTAAGGATTACTATAAAGGCGTC 57.255 38.462 0.00 0.00 0.00 5.19
617 618 8.474710 TTCTAAGGATTACTATAAAGGCGTCT 57.525 34.615 0.00 0.00 0.00 4.18
618 619 7.883217 TCTAAGGATTACTATAAAGGCGTCTG 58.117 38.462 0.00 0.00 0.00 3.51
619 620 6.481434 AAGGATTACTATAAAGGCGTCTGT 57.519 37.500 0.00 0.00 0.00 3.41
620 621 5.844004 AGGATTACTATAAAGGCGTCTGTG 58.156 41.667 0.00 0.00 0.00 3.66
621 622 5.597182 AGGATTACTATAAAGGCGTCTGTGA 59.403 40.000 0.00 0.00 0.00 3.58
622 623 5.690857 GGATTACTATAAAGGCGTCTGTGAC 59.309 44.000 0.00 0.00 0.00 3.67
623 624 5.648178 TTACTATAAAGGCGTCTGTGACA 57.352 39.130 0.00 0.00 32.09 3.58
624 625 4.530710 ACTATAAAGGCGTCTGTGACAA 57.469 40.909 0.00 0.00 32.09 3.18
625 626 5.086104 ACTATAAAGGCGTCTGTGACAAT 57.914 39.130 0.00 0.00 32.09 2.71
626 627 5.488341 ACTATAAAGGCGTCTGTGACAATT 58.512 37.500 0.00 0.00 32.09 2.32
627 628 5.938125 ACTATAAAGGCGTCTGTGACAATTT 59.062 36.000 0.00 0.00 32.09 1.82
628 629 3.626028 AAAGGCGTCTGTGACAATTTC 57.374 42.857 0.00 0.00 32.09 2.17
629 630 1.148310 AGGCGTCTGTGACAATTTCG 58.852 50.000 0.00 0.00 32.09 3.46
630 631 0.865769 GGCGTCTGTGACAATTTCGT 59.134 50.000 0.00 0.00 32.09 3.85
631 632 1.136336 GGCGTCTGTGACAATTTCGTC 60.136 52.381 0.00 0.00 36.40 4.20
632 633 1.525197 GCGTCTGTGACAATTTCGTCA 59.475 47.619 0.00 0.00 43.54 4.35
633 634 2.033236 GCGTCTGTGACAATTTCGTCAA 60.033 45.455 0.51 0.00 46.99 3.18
634 635 3.363970 GCGTCTGTGACAATTTCGTCAAT 60.364 43.478 0.51 0.00 46.99 2.57
635 636 4.386230 CGTCTGTGACAATTTCGTCAATC 58.614 43.478 0.51 0.00 46.99 2.67
636 637 4.150627 CGTCTGTGACAATTTCGTCAATCT 59.849 41.667 0.51 0.00 46.99 2.40
637 638 5.333339 CGTCTGTGACAATTTCGTCAATCTT 60.333 40.000 0.51 0.00 46.99 2.40
638 639 6.128929 CGTCTGTGACAATTTCGTCAATCTTA 60.129 38.462 0.51 0.00 46.99 2.10
639 640 7.568679 CGTCTGTGACAATTTCGTCAATCTTAA 60.569 37.037 0.51 0.00 46.99 1.85
640 641 7.742089 GTCTGTGACAATTTCGTCAATCTTAAG 59.258 37.037 0.00 0.00 46.99 1.85
641 642 7.655732 TCTGTGACAATTTCGTCAATCTTAAGA 59.344 33.333 7.82 7.82 46.99 2.10
642 643 8.322906 TGTGACAATTTCGTCAATCTTAAGAT 57.677 30.769 12.37 12.37 46.99 2.40
643 644 9.430623 TGTGACAATTTCGTCAATCTTAAGATA 57.569 29.630 18.23 0.96 46.99 1.98
651 652 7.869016 TCGTCAATCTTAAGATAATTAGCCG 57.131 36.000 18.23 12.80 33.73 5.52
652 653 7.431249 TCGTCAATCTTAAGATAATTAGCCGT 58.569 34.615 18.23 0.00 33.73 5.68
653 654 7.594015 TCGTCAATCTTAAGATAATTAGCCGTC 59.406 37.037 18.23 1.07 33.73 4.79
654 655 7.595502 CGTCAATCTTAAGATAATTAGCCGTCT 59.404 37.037 18.23 0.00 33.73 4.18
655 656 8.917655 GTCAATCTTAAGATAATTAGCCGTCTC 58.082 37.037 18.23 0.00 33.73 3.36
656 657 8.638873 TCAATCTTAAGATAATTAGCCGTCTCA 58.361 33.333 18.23 0.00 33.73 3.27
657 658 8.920665 CAATCTTAAGATAATTAGCCGTCTCAG 58.079 37.037 18.23 0.00 33.73 3.35
658 659 7.584122 TCTTAAGATAATTAGCCGTCTCAGT 57.416 36.000 0.00 0.00 0.00 3.41
659 660 7.649973 TCTTAAGATAATTAGCCGTCTCAGTC 58.350 38.462 0.00 0.00 0.00 3.51
660 661 7.502895 TCTTAAGATAATTAGCCGTCTCAGTCT 59.497 37.037 0.00 0.00 0.00 3.24
661 662 5.699097 AGATAATTAGCCGTCTCAGTCTC 57.301 43.478 0.00 0.00 0.00 3.36
662 663 5.381757 AGATAATTAGCCGTCTCAGTCTCT 58.618 41.667 0.00 0.00 0.00 3.10
663 664 5.472137 AGATAATTAGCCGTCTCAGTCTCTC 59.528 44.000 0.00 0.00 0.00 3.20
664 665 1.370609 TTAGCCGTCTCAGTCTCTCG 58.629 55.000 0.00 0.00 0.00 4.04
665 666 0.535797 TAGCCGTCTCAGTCTCTCGA 59.464 55.000 0.00 0.00 0.00 4.04
666 667 0.321741 AGCCGTCTCAGTCTCTCGAA 60.322 55.000 0.00 0.00 0.00 3.71
667 668 0.098025 GCCGTCTCAGTCTCTCGAAG 59.902 60.000 0.00 0.00 0.00 3.79
668 669 0.730265 CCGTCTCAGTCTCTCGAAGG 59.270 60.000 0.00 0.00 0.00 3.46
669 670 1.444836 CGTCTCAGTCTCTCGAAGGT 58.555 55.000 0.00 0.00 0.00 3.50
670 671 2.619147 CGTCTCAGTCTCTCGAAGGTA 58.381 52.381 0.00 0.00 0.00 3.08
671 672 3.199677 CGTCTCAGTCTCTCGAAGGTAT 58.800 50.000 0.00 0.00 0.00 2.73
672 673 3.623960 CGTCTCAGTCTCTCGAAGGTATT 59.376 47.826 0.00 0.00 0.00 1.89
673 674 4.095185 CGTCTCAGTCTCTCGAAGGTATTT 59.905 45.833 0.00 0.00 0.00 1.40
674 675 5.293814 CGTCTCAGTCTCTCGAAGGTATTTA 59.706 44.000 0.00 0.00 0.00 1.40
675 676 6.017770 CGTCTCAGTCTCTCGAAGGTATTTAT 60.018 42.308 0.00 0.00 0.00 1.40
676 677 7.171167 CGTCTCAGTCTCTCGAAGGTATTTATA 59.829 40.741 0.00 0.00 0.00 0.98
677 678 8.500773 GTCTCAGTCTCTCGAAGGTATTTATAG 58.499 40.741 0.00 0.00 0.00 1.31
678 679 7.662258 TCTCAGTCTCTCGAAGGTATTTATAGG 59.338 40.741 0.00 0.00 0.00 2.57
679 680 6.715718 TCAGTCTCTCGAAGGTATTTATAGGG 59.284 42.308 0.00 0.00 0.00 3.53
680 681 6.490721 CAGTCTCTCGAAGGTATTTATAGGGT 59.509 42.308 0.00 0.00 0.00 4.34
681 682 6.490721 AGTCTCTCGAAGGTATTTATAGGGTG 59.509 42.308 0.00 0.00 0.00 4.61
682 683 6.264970 GTCTCTCGAAGGTATTTATAGGGTGT 59.735 42.308 0.00 0.00 0.00 4.16
683 684 6.264744 TCTCTCGAAGGTATTTATAGGGTGTG 59.735 42.308 0.00 0.00 0.00 3.82
684 685 5.895534 TCTCGAAGGTATTTATAGGGTGTGT 59.104 40.000 0.00 0.00 0.00 3.72
685 686 5.909477 TCGAAGGTATTTATAGGGTGTGTG 58.091 41.667 0.00 0.00 0.00 3.82
686 687 5.422970 TCGAAGGTATTTATAGGGTGTGTGT 59.577 40.000 0.00 0.00 0.00 3.72
687 688 6.070653 TCGAAGGTATTTATAGGGTGTGTGTT 60.071 38.462 0.00 0.00 0.00 3.32
688 689 6.257193 CGAAGGTATTTATAGGGTGTGTGTTC 59.743 42.308 0.00 0.00 0.00 3.18
689 690 6.630203 AGGTATTTATAGGGTGTGTGTTCA 57.370 37.500 0.00 0.00 0.00 3.18
690 691 7.208064 AGGTATTTATAGGGTGTGTGTTCAT 57.792 36.000 0.00 0.00 0.00 2.57
691 692 8.326765 AGGTATTTATAGGGTGTGTGTTCATA 57.673 34.615 0.00 0.00 0.00 2.15
692 693 8.774183 AGGTATTTATAGGGTGTGTGTTCATAA 58.226 33.333 0.00 0.00 0.00 1.90
693 694 9.398538 GGTATTTATAGGGTGTGTGTTCATAAA 57.601 33.333 0.00 0.00 0.00 1.40
696 697 8.927675 TTTATAGGGTGTGTGTTCATAAAAGT 57.072 30.769 0.00 0.00 0.00 2.66
697 698 6.817765 ATAGGGTGTGTGTTCATAAAAGTG 57.182 37.500 0.00 0.00 0.00 3.16
698 699 4.787551 AGGGTGTGTGTTCATAAAAGTGA 58.212 39.130 0.00 0.00 0.00 3.41
699 700 5.197451 AGGGTGTGTGTTCATAAAAGTGAA 58.803 37.500 0.00 0.00 35.84 3.18
700 701 5.833131 AGGGTGTGTGTTCATAAAAGTGAAT 59.167 36.000 0.00 0.00 39.99 2.57
701 702 5.920273 GGGTGTGTGTTCATAAAAGTGAATG 59.080 40.000 0.00 0.00 39.99 2.67
702 703 6.460953 GGGTGTGTGTTCATAAAAGTGAATGT 60.461 38.462 0.00 0.00 39.99 2.71
703 704 7.255312 GGGTGTGTGTTCATAAAAGTGAATGTA 60.255 37.037 0.00 0.00 39.99 2.29
704 705 8.296713 GGTGTGTGTTCATAAAAGTGAATGTAT 58.703 33.333 0.00 0.00 39.99 2.29
705 706 9.117145 GTGTGTGTTCATAAAAGTGAATGTATG 57.883 33.333 0.00 0.00 39.99 2.39
706 707 8.845227 TGTGTGTTCATAAAAGTGAATGTATGT 58.155 29.630 0.00 0.00 39.99 2.29
707 708 9.117145 GTGTGTTCATAAAAGTGAATGTATGTG 57.883 33.333 0.00 0.00 39.99 3.21
708 709 7.807433 TGTGTTCATAAAAGTGAATGTATGTGC 59.193 33.333 0.00 0.00 39.99 4.57
709 710 7.807433 GTGTTCATAAAAGTGAATGTATGTGCA 59.193 33.333 0.00 0.00 39.99 4.57
710 711 8.522003 TGTTCATAAAAGTGAATGTATGTGCAT 58.478 29.630 0.00 0.00 39.99 3.96
714 715 9.955208 CATAAAAGTGAATGTATGTGCATATGT 57.045 29.630 6.16 0.00 0.00 2.29
715 716 9.955208 ATAAAAGTGAATGTATGTGCATATGTG 57.045 29.630 6.16 0.00 0.00 3.21
716 717 7.395190 AAAGTGAATGTATGTGCATATGTGT 57.605 32.000 6.16 0.00 0.00 3.72
717 718 6.367686 AGTGAATGTATGTGCATATGTGTG 57.632 37.500 6.16 0.00 0.00 3.82
718 719 6.114767 AGTGAATGTATGTGCATATGTGTGA 58.885 36.000 6.16 0.00 0.00 3.58
719 720 6.259387 AGTGAATGTATGTGCATATGTGTGAG 59.741 38.462 6.16 0.00 0.00 3.51
720 721 5.528320 TGAATGTATGTGCATATGTGTGAGG 59.472 40.000 6.16 0.00 0.00 3.86
721 722 3.205338 TGTATGTGCATATGTGTGAGGC 58.795 45.455 6.16 0.00 0.00 4.70
722 723 2.723322 ATGTGCATATGTGTGAGGCT 57.277 45.000 4.29 0.00 0.00 4.58
723 724 2.028420 TGTGCATATGTGTGAGGCTC 57.972 50.000 7.79 7.79 0.00 4.70
724 725 1.556451 TGTGCATATGTGTGAGGCTCT 59.444 47.619 16.72 0.00 0.00 4.09
725 726 2.208431 GTGCATATGTGTGAGGCTCTC 58.792 52.381 16.72 12.99 0.00 3.20
726 727 1.139654 TGCATATGTGTGAGGCTCTCC 59.860 52.381 16.72 6.93 0.00 3.71
727 728 1.871408 GCATATGTGTGAGGCTCTCCG 60.871 57.143 16.72 0.00 37.47 4.63
728 729 1.410517 CATATGTGTGAGGCTCTCCGT 59.589 52.381 16.72 9.87 37.47 4.69
729 730 1.103803 TATGTGTGAGGCTCTCCGTC 58.896 55.000 16.72 6.35 37.47 4.79
730 731 1.608717 ATGTGTGAGGCTCTCCGTCC 61.609 60.000 16.72 1.46 37.47 4.79
731 732 3.062466 TGTGAGGCTCTCCGTCCG 61.062 66.667 16.72 0.00 37.47 4.79
732 733 3.063084 GTGAGGCTCTCCGTCCGT 61.063 66.667 16.72 0.00 37.47 4.69
733 734 3.062466 TGAGGCTCTCCGTCCGTG 61.062 66.667 16.72 0.00 37.47 4.94
734 735 4.500116 GAGGCTCTCCGTCCGTGC 62.500 72.222 7.40 0.00 37.47 5.34
736 737 4.803426 GGCTCTCCGTCCGTGCTG 62.803 72.222 0.00 0.00 0.00 4.41
737 738 4.057428 GCTCTCCGTCCGTGCTGT 62.057 66.667 0.00 0.00 0.00 4.40
738 739 2.179517 CTCTCCGTCCGTGCTGTC 59.820 66.667 0.00 0.00 0.00 3.51
739 740 2.282251 TCTCCGTCCGTGCTGTCT 60.282 61.111 0.00 0.00 0.00 3.41
740 741 1.002990 TCTCCGTCCGTGCTGTCTA 60.003 57.895 0.00 0.00 0.00 2.59
741 742 0.607217 TCTCCGTCCGTGCTGTCTAA 60.607 55.000 0.00 0.00 0.00 2.10
742 743 0.242825 CTCCGTCCGTGCTGTCTAAA 59.757 55.000 0.00 0.00 0.00 1.85
743 744 0.675083 TCCGTCCGTGCTGTCTAAAA 59.325 50.000 0.00 0.00 0.00 1.52
744 745 1.068895 TCCGTCCGTGCTGTCTAAAAA 59.931 47.619 0.00 0.00 0.00 1.94
819 820 3.533606 AAATGTCAGGTCTGGATCTCG 57.466 47.619 0.00 0.00 0.00 4.04
826 827 5.046591 TGTCAGGTCTGGATCTCGTTATTTT 60.047 40.000 0.00 0.00 0.00 1.82
1164 1534 4.748798 CTGCCCACCCTCCTCCCT 62.749 72.222 0.00 0.00 0.00 4.20
1170 1540 2.612115 ACCCTCCTCCCTTGCCTG 60.612 66.667 0.00 0.00 0.00 4.85
1473 1843 4.415332 GCCGTCGACGCCTTCTCA 62.415 66.667 31.73 0.00 38.18 3.27
1956 2326 7.094118 GGGTATAGTTGTCTGATAGATGGTCTC 60.094 44.444 0.00 0.00 0.00 3.36
1965 2335 2.550277 TAGATGGTCTCTTCCAGGCA 57.450 50.000 0.00 0.00 41.05 4.75
2079 2449 3.715097 GCAGAGGCTGGCAGGACT 61.715 66.667 17.64 4.13 36.96 3.85
2169 2539 0.240411 CACTGCTCAAGGCTTTCTGC 59.760 55.000 0.00 2.86 42.39 4.26
2176 2546 1.159285 CAAGGCTTTCTGCGATGTCA 58.841 50.000 0.00 0.00 44.05 3.58
2178 2548 0.322975 AGGCTTTCTGCGATGTCAGT 59.677 50.000 0.00 0.00 44.05 3.41
2189 2559 3.641436 TGCGATGTCAGTAACCTGGATAT 59.359 43.478 0.00 0.00 39.31 1.63
2231 2601 4.885907 AGAGATGTTGCAGAATAATGTGGG 59.114 41.667 0.00 0.00 0.00 4.61
2247 2617 1.150536 GGGCCTGGACTCAACAACA 59.849 57.895 0.84 0.00 0.00 3.33
2292 2662 4.569943 TGTGCAAGAAAGGACTCATAGAC 58.430 43.478 0.00 0.00 0.00 2.59
2404 2774 1.181741 CGGCAGGCTAGAGGATGCTA 61.182 60.000 0.00 0.00 38.71 3.49
2701 3071 6.099557 ACTTAAGGGAATCTCTCCTGATGAAG 59.900 42.308 7.53 0.00 44.68 3.02
2853 3223 9.206690 AGATCACTCTGTAGGATGAAGAAATTA 57.793 33.333 0.00 0.00 0.00 1.40
3123 3493 5.776716 AGAATTTGGAATTGATGTCACACCT 59.223 36.000 0.00 0.00 0.00 4.00
3621 3991 3.737559 AACATGCATTTACTCAGGGGA 57.262 42.857 0.00 0.00 0.00 4.81
3773 4143 5.871465 TTGCTTCGAGTAATGCATGTTTA 57.129 34.783 0.00 0.00 35.27 2.01
3774 4144 5.216566 TGCTTCGAGTAATGCATGTTTAC 57.783 39.130 0.00 0.00 0.00 2.01
3854 4224 8.470002 ACTGCCTTTGAATTTATTTACCATCTC 58.530 33.333 0.00 0.00 0.00 2.75
3858 4228 7.850982 CCTTTGAATTTATTTACCATCTCGTCG 59.149 37.037 0.00 0.00 0.00 5.12
3950 4320 6.420604 CCCTTGCTTGGTTATTTTATTATGCG 59.579 38.462 0.00 0.00 0.00 4.73
3987 4357 9.952188 ACTTACAATTAGCTTTCTTGTTTCTTC 57.048 29.630 11.84 0.00 35.00 2.87
4027 4398 0.250727 TCCCTTTCTGTTGGAAGCCG 60.251 55.000 0.00 0.00 35.16 5.52
4115 4487 3.804873 GCTAGACAGCTAATGTTGCTACC 59.195 47.826 0.00 0.00 44.17 3.18
4161 4533 4.789012 TCTCAAGCAATTTGAATGGTCC 57.211 40.909 0.00 0.00 44.84 4.46
4372 4745 7.233348 ACATAATGTCCTTGTCAACCTTTCAAT 59.767 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.877866 ACCGATCGGATGGAATAGACT 58.122 47.619 39.55 10.55 38.96 3.24
1 2 3.662247 AACCGATCGGATGGAATAGAC 57.338 47.619 39.55 0.00 38.96 2.59
2 3 4.682778 AAAACCGATCGGATGGAATAGA 57.317 40.909 39.55 0.00 38.96 1.98
21 22 6.875948 TGCTCTAGTCAATGCAACTAAAAA 57.124 33.333 0.00 0.00 32.12 1.94
22 23 6.623549 GCATGCTCTAGTCAATGCAACTAAAA 60.624 38.462 11.37 0.00 38.96 1.52
23 24 5.163723 GCATGCTCTAGTCAATGCAACTAAA 60.164 40.000 11.37 0.00 38.96 1.85
24 25 4.333649 GCATGCTCTAGTCAATGCAACTAA 59.666 41.667 11.37 0.00 38.96 2.24
25 26 3.873361 GCATGCTCTAGTCAATGCAACTA 59.127 43.478 11.37 0.00 38.96 2.24
26 27 2.681848 GCATGCTCTAGTCAATGCAACT 59.318 45.455 11.37 0.00 38.96 3.16
27 28 2.421073 TGCATGCTCTAGTCAATGCAAC 59.579 45.455 20.33 8.82 41.32 4.17
28 29 2.421073 GTGCATGCTCTAGTCAATGCAA 59.579 45.455 20.33 10.22 44.98 4.08
29 30 2.011947 GTGCATGCTCTAGTCAATGCA 58.988 47.619 20.33 18.49 41.91 3.96
30 31 2.286872 AGTGCATGCTCTAGTCAATGC 58.713 47.619 20.22 15.01 35.77 3.56
31 32 4.190001 AGAAGTGCATGCTCTAGTCAATG 58.810 43.478 21.70 0.00 0.00 2.82
32 33 4.484537 AGAAGTGCATGCTCTAGTCAAT 57.515 40.909 21.70 5.92 0.00 2.57
33 34 3.969287 AGAAGTGCATGCTCTAGTCAA 57.031 42.857 21.70 0.00 0.00 3.18
34 35 3.181496 CGTAGAAGTGCATGCTCTAGTCA 60.181 47.826 21.70 6.03 0.00 3.41
35 36 3.065510 TCGTAGAAGTGCATGCTCTAGTC 59.934 47.826 21.70 16.19 0.00 2.59
36 37 3.017442 TCGTAGAAGTGCATGCTCTAGT 58.983 45.455 21.70 14.24 0.00 2.57
37 38 3.367607 GTCGTAGAAGTGCATGCTCTAG 58.632 50.000 21.70 12.14 39.69 2.43
38 39 2.099263 GGTCGTAGAAGTGCATGCTCTA 59.901 50.000 21.70 15.62 39.69 2.43
39 40 1.134965 GGTCGTAGAAGTGCATGCTCT 60.135 52.381 20.33 18.23 39.69 4.09
40 41 1.281899 GGTCGTAGAAGTGCATGCTC 58.718 55.000 20.33 15.94 39.69 4.26
41 42 0.608130 TGGTCGTAGAAGTGCATGCT 59.392 50.000 20.33 0.00 39.69 3.79
42 43 0.721718 GTGGTCGTAGAAGTGCATGC 59.278 55.000 11.82 11.82 39.69 4.06
43 44 2.078849 TGTGGTCGTAGAAGTGCATG 57.921 50.000 0.00 0.00 39.69 4.06
44 45 2.831685 TTGTGGTCGTAGAAGTGCAT 57.168 45.000 0.00 0.00 39.69 3.96
45 46 2.412870 CATTGTGGTCGTAGAAGTGCA 58.587 47.619 0.00 0.00 39.69 4.57
46 47 1.128692 GCATTGTGGTCGTAGAAGTGC 59.871 52.381 0.00 0.00 39.69 4.40
47 48 1.732259 GGCATTGTGGTCGTAGAAGTG 59.268 52.381 0.00 0.00 39.69 3.16
48 49 1.346395 TGGCATTGTGGTCGTAGAAGT 59.654 47.619 0.00 0.00 39.69 3.01
49 50 2.093306 TGGCATTGTGGTCGTAGAAG 57.907 50.000 0.00 0.00 39.69 2.85
50 51 2.552599 TTGGCATTGTGGTCGTAGAA 57.447 45.000 0.00 0.00 39.69 2.10
51 52 2.355197 CATTGGCATTGTGGTCGTAGA 58.645 47.619 1.27 0.00 0.00 2.59
52 53 1.202177 GCATTGGCATTGTGGTCGTAG 60.202 52.381 10.72 0.00 40.72 3.51
53 54 0.808125 GCATTGGCATTGTGGTCGTA 59.192 50.000 10.72 0.00 40.72 3.43
54 55 1.586028 GCATTGGCATTGTGGTCGT 59.414 52.632 10.72 0.00 40.72 4.34
55 56 1.153784 GGCATTGGCATTGTGGTCG 60.154 57.895 10.72 0.00 43.71 4.79
56 57 1.218854 GGGCATTGGCATTGTGGTC 59.781 57.895 12.70 0.00 43.71 4.02
57 58 2.648143 CGGGCATTGGCATTGTGGT 61.648 57.895 12.70 0.00 43.71 4.16
58 59 2.184836 CGGGCATTGGCATTGTGG 59.815 61.111 12.70 0.00 43.71 4.17
59 60 2.509786 GCGGGCATTGGCATTGTG 60.510 61.111 12.70 1.50 43.71 3.33
60 61 3.773404 GGCGGGCATTGGCATTGT 61.773 61.111 12.70 0.00 43.71 2.71
61 62 4.534141 GGGCGGGCATTGGCATTG 62.534 66.667 12.70 5.04 43.71 2.82
88 89 4.552365 ACGAGATGCATGGCCGGG 62.552 66.667 2.46 0.00 0.00 5.73
89 90 2.969238 GACGAGATGCATGGCCGG 60.969 66.667 2.46 0.00 0.00 6.13
90 91 3.333189 CGACGAGATGCATGGCCG 61.333 66.667 2.46 7.19 0.00 6.13
91 92 1.301244 ATCGACGAGATGCATGGCC 60.301 57.895 2.46 0.00 38.36 5.36
92 93 4.350620 ATCGACGAGATGCATGGC 57.649 55.556 2.46 0.00 38.36 4.40
99 100 1.141881 GGTGTGGCATCGACGAGAT 59.858 57.895 3.01 0.00 41.01 2.75
100 101 2.571757 GGTGTGGCATCGACGAGA 59.428 61.111 3.01 0.00 0.00 4.04
101 102 1.663379 TAGGGTGTGGCATCGACGAG 61.663 60.000 3.01 0.00 0.00 4.18
102 103 1.679641 TAGGGTGTGGCATCGACGA 60.680 57.895 0.00 0.00 0.00 4.20
103 104 1.518572 GTAGGGTGTGGCATCGACG 60.519 63.158 0.00 0.00 0.00 5.12
104 105 0.179108 GAGTAGGGTGTGGCATCGAC 60.179 60.000 0.00 0.00 0.00 4.20
105 106 1.327690 GGAGTAGGGTGTGGCATCGA 61.328 60.000 0.00 0.00 0.00 3.59
106 107 1.144057 GGAGTAGGGTGTGGCATCG 59.856 63.158 0.00 0.00 0.00 3.84
107 108 0.179000 CTGGAGTAGGGTGTGGCATC 59.821 60.000 0.00 0.00 0.00 3.91
108 109 0.547712 ACTGGAGTAGGGTGTGGCAT 60.548 55.000 0.00 0.00 0.00 4.40
109 110 1.152118 ACTGGAGTAGGGTGTGGCA 60.152 57.895 0.00 0.00 0.00 4.92
110 111 1.296715 CACTGGAGTAGGGTGTGGC 59.703 63.158 0.00 0.00 0.00 5.01
111 112 0.608640 GACACTGGAGTAGGGTGTGG 59.391 60.000 2.66 0.00 45.06 4.17
112 113 0.243907 CGACACTGGAGTAGGGTGTG 59.756 60.000 2.66 0.00 45.06 3.82
113 114 1.533469 GCGACACTGGAGTAGGGTGT 61.533 60.000 0.00 0.00 45.06 4.16
114 115 1.215647 GCGACACTGGAGTAGGGTG 59.784 63.158 0.00 0.00 45.06 4.61
116 117 2.490217 CGCGACACTGGAGTAGGG 59.510 66.667 0.00 0.00 35.29 3.53
117 118 2.202623 GCGCGACACTGGAGTAGG 60.203 66.667 12.10 0.00 0.00 3.18
118 119 2.202623 GGCGCGACACTGGAGTAG 60.203 66.667 12.10 0.00 0.00 2.57
119 120 3.755628 GGGCGCGACACTGGAGTA 61.756 66.667 17.00 0.00 0.00 2.59
133 134 4.632974 CTATGGCTCGGCAGGGGC 62.633 72.222 2.50 2.50 44.83 5.80
134 135 4.632974 GCTATGGCTCGGCAGGGG 62.633 72.222 0.00 0.00 35.22 4.79
135 136 3.188015 ATGCTATGGCTCGGCAGGG 62.188 63.158 1.68 0.00 39.38 4.45
136 137 1.670406 GATGCTATGGCTCGGCAGG 60.670 63.158 1.68 0.00 39.38 4.85
137 138 0.250209 AAGATGCTATGGCTCGGCAG 60.250 55.000 1.68 0.00 39.38 4.85
138 139 0.533531 CAAGATGCTATGGCTCGGCA 60.534 55.000 1.68 0.00 40.32 5.69
139 140 0.533755 ACAAGATGCTATGGCTCGGC 60.534 55.000 1.68 0.00 39.59 5.54
140 141 1.224075 CACAAGATGCTATGGCTCGG 58.776 55.000 1.68 0.00 39.59 4.63
166 167 3.612247 CTTCCTCCCTGGCGTGTGG 62.612 68.421 0.00 0.00 35.26 4.17
167 168 2.046892 CTTCCTCCCTGGCGTGTG 60.047 66.667 0.00 0.00 35.26 3.82
168 169 3.322466 CCTTCCTCCCTGGCGTGT 61.322 66.667 0.00 0.00 35.26 4.49
169 170 3.003173 TCCTTCCTCCCTGGCGTG 61.003 66.667 0.00 0.00 35.26 5.34
170 171 2.685380 CTCCTTCCTCCCTGGCGT 60.685 66.667 0.00 0.00 35.26 5.68
171 172 3.474570 CCTCCTTCCTCCCTGGCG 61.475 72.222 0.00 0.00 35.26 5.69
172 173 2.041265 TCCTCCTTCCTCCCTGGC 59.959 66.667 0.00 0.00 35.26 4.85
173 174 2.069430 GCTCCTCCTTCCTCCCTGG 61.069 68.421 0.00 0.00 37.10 4.45
174 175 2.069430 GGCTCCTCCTTCCTCCCTG 61.069 68.421 0.00 0.00 0.00 4.45
175 176 2.370633 GGCTCCTCCTTCCTCCCT 59.629 66.667 0.00 0.00 0.00 4.20
176 177 2.770475 GGGCTCCTCCTTCCTCCC 60.770 72.222 0.00 0.00 34.39 4.30
177 178 2.770475 GGGGCTCCTCCTTCCTCC 60.770 72.222 0.00 0.00 34.39 4.30
178 179 3.157949 CGGGGCTCCTCCTTCCTC 61.158 72.222 0.00 0.00 34.39 3.71
181 182 3.717294 TTGCGGGGCTCCTCCTTC 61.717 66.667 0.00 0.00 34.39 3.46
182 183 4.035102 GTTGCGGGGCTCCTCCTT 62.035 66.667 0.00 0.00 34.39 3.36
193 194 3.726517 CAGCTTCCACGGTTGCGG 61.727 66.667 0.00 0.00 0.00 5.69
194 195 4.389576 GCAGCTTCCACGGTTGCG 62.390 66.667 0.00 0.00 0.00 4.85
195 196 4.043200 GGCAGCTTCCACGGTTGC 62.043 66.667 0.00 0.00 0.00 4.17
196 197 3.726517 CGGCAGCTTCCACGGTTG 61.727 66.667 2.54 0.00 0.00 3.77
239 240 3.387225 GAACCCTAGCTCCCGCCAC 62.387 68.421 0.00 0.00 36.60 5.01
240 241 3.081409 GAACCCTAGCTCCCGCCA 61.081 66.667 0.00 0.00 36.60 5.69
241 242 4.222847 CGAACCCTAGCTCCCGCC 62.223 72.222 0.00 0.00 36.60 6.13
242 243 4.893601 GCGAACCCTAGCTCCCGC 62.894 72.222 0.00 0.00 35.91 6.13
243 244 4.222847 GGCGAACCCTAGCTCCCG 62.223 72.222 0.00 0.00 0.00 5.14
254 255 4.309950 AGTGGTGTCGGGGCGAAC 62.310 66.667 0.00 0.00 37.72 3.95
255 256 4.308458 CAGTGGTGTCGGGGCGAA 62.308 66.667 0.00 0.00 37.72 4.70
259 260 4.263572 TTGCCAGTGGTGTCGGGG 62.264 66.667 11.74 0.00 0.00 5.73
260 261 2.669569 CTTGCCAGTGGTGTCGGG 60.670 66.667 11.74 0.00 0.00 5.14
261 262 1.669115 CTCTTGCCAGTGGTGTCGG 60.669 63.158 11.74 0.00 0.00 4.79
262 263 1.069765 ACTCTTGCCAGTGGTGTCG 59.930 57.895 11.74 0.00 0.00 4.35
263 264 0.106708 TCACTCTTGCCAGTGGTGTC 59.893 55.000 11.74 0.00 43.59 3.67
264 265 0.179045 GTCACTCTTGCCAGTGGTGT 60.179 55.000 11.74 0.00 43.59 4.16
265 266 0.179048 TGTCACTCTTGCCAGTGGTG 60.179 55.000 11.74 0.00 43.59 4.17
266 267 0.179045 GTGTCACTCTTGCCAGTGGT 60.179 55.000 11.74 0.00 43.59 4.16
267 268 1.224069 CGTGTCACTCTTGCCAGTGG 61.224 60.000 4.20 4.20 43.59 4.00
268 269 1.835483 GCGTGTCACTCTTGCCAGTG 61.835 60.000 0.65 1.93 44.61 3.66
269 270 1.595382 GCGTGTCACTCTTGCCAGT 60.595 57.895 0.65 0.00 0.00 4.00
270 271 2.320587 GGCGTGTCACTCTTGCCAG 61.321 63.158 13.04 0.00 45.06 4.85
271 272 2.280797 GGCGTGTCACTCTTGCCA 60.281 61.111 13.04 0.00 45.06 4.92
272 273 3.050275 GGGCGTGTCACTCTTGCC 61.050 66.667 10.27 10.27 44.98 4.52
273 274 3.414700 CGGGCGTGTCACTCTTGC 61.415 66.667 0.65 0.00 0.00 4.01
274 275 1.284982 CTTCGGGCGTGTCACTCTTG 61.285 60.000 0.65 0.00 0.00 3.02
275 276 1.006102 CTTCGGGCGTGTCACTCTT 60.006 57.895 0.65 0.00 0.00 2.85
276 277 2.201022 ACTTCGGGCGTGTCACTCT 61.201 57.895 0.65 0.00 0.00 3.24
277 278 2.022129 CACTTCGGGCGTGTCACTC 61.022 63.158 0.65 0.00 0.00 3.51
278 279 1.816863 ATCACTTCGGGCGTGTCACT 61.817 55.000 0.65 0.00 34.14 3.41
279 280 0.949105 AATCACTTCGGGCGTGTCAC 60.949 55.000 0.00 0.00 34.14 3.67
280 281 0.250124 AAATCACTTCGGGCGTGTCA 60.250 50.000 0.00 0.00 34.14 3.58
281 282 0.872388 AAAATCACTTCGGGCGTGTC 59.128 50.000 0.00 0.00 34.14 3.67
282 283 0.591170 CAAAATCACTTCGGGCGTGT 59.409 50.000 0.00 0.00 34.14 4.49
283 284 0.871722 TCAAAATCACTTCGGGCGTG 59.128 50.000 0.00 0.00 0.00 5.34
284 285 1.821216 ATCAAAATCACTTCGGGCGT 58.179 45.000 0.00 0.00 0.00 5.68
285 286 2.287915 CCTATCAAAATCACTTCGGGCG 59.712 50.000 0.00 0.00 0.00 6.13
286 287 3.065371 CACCTATCAAAATCACTTCGGGC 59.935 47.826 0.00 0.00 0.00 6.13
287 288 4.261801 ACACCTATCAAAATCACTTCGGG 58.738 43.478 0.00 0.00 0.00 5.14
288 289 5.880054 AACACCTATCAAAATCACTTCGG 57.120 39.130 0.00 0.00 0.00 4.30
326 327 3.821421 AAACACCACGAGAGAAGTTCT 57.179 42.857 4.68 4.68 39.43 3.01
327 328 3.060473 CGAAAACACCACGAGAGAAGTTC 60.060 47.826 0.00 0.00 0.00 3.01
328 329 2.864343 CGAAAACACCACGAGAGAAGTT 59.136 45.455 0.00 0.00 0.00 2.66
329 330 2.159142 ACGAAAACACCACGAGAGAAGT 60.159 45.455 0.00 0.00 0.00 3.01
330 331 2.470821 ACGAAAACACCACGAGAGAAG 58.529 47.619 0.00 0.00 0.00 2.85
331 332 2.589798 ACGAAAACACCACGAGAGAA 57.410 45.000 0.00 0.00 0.00 2.87
332 333 3.928727 ATACGAAAACACCACGAGAGA 57.071 42.857 0.00 0.00 0.00 3.10
333 334 5.579718 AGATATACGAAAACACCACGAGAG 58.420 41.667 0.00 0.00 0.00 3.20
334 335 5.571784 AGATATACGAAAACACCACGAGA 57.428 39.130 0.00 0.00 0.00 4.04
335 336 6.722301 TCTAGATATACGAAAACACCACGAG 58.278 40.000 0.00 0.00 0.00 4.18
336 337 6.682423 TCTAGATATACGAAAACACCACGA 57.318 37.500 0.00 0.00 0.00 4.35
337 338 7.925703 ATTCTAGATATACGAAAACACCACG 57.074 36.000 0.00 0.00 0.00 4.94
338 339 9.309516 TGAATTCTAGATATACGAAAACACCAC 57.690 33.333 7.05 0.00 0.00 4.16
356 357 9.941325 ACACATGCCAAATAAAAATGAATTCTA 57.059 25.926 7.05 0.00 0.00 2.10
357 358 8.851541 ACACATGCCAAATAAAAATGAATTCT 57.148 26.923 7.05 0.00 0.00 2.40
358 359 7.899330 CGACACATGCCAAATAAAAATGAATTC 59.101 33.333 0.00 0.00 0.00 2.17
359 360 7.387397 ACGACACATGCCAAATAAAAATGAATT 59.613 29.630 0.00 0.00 0.00 2.17
360 361 6.873076 ACGACACATGCCAAATAAAAATGAAT 59.127 30.769 0.00 0.00 0.00 2.57
361 362 6.219473 ACGACACATGCCAAATAAAAATGAA 58.781 32.000 0.00 0.00 0.00 2.57
362 363 5.777802 ACGACACATGCCAAATAAAAATGA 58.222 33.333 0.00 0.00 0.00 2.57
363 364 6.298103 CAACGACACATGCCAAATAAAAATG 58.702 36.000 0.00 0.00 0.00 2.32
364 365 5.407995 CCAACGACACATGCCAAATAAAAAT 59.592 36.000 0.00 0.00 0.00 1.82
365 366 4.747108 CCAACGACACATGCCAAATAAAAA 59.253 37.500 0.00 0.00 0.00 1.94
366 367 4.202161 ACCAACGACACATGCCAAATAAAA 60.202 37.500 0.00 0.00 0.00 1.52
367 368 3.319405 ACCAACGACACATGCCAAATAAA 59.681 39.130 0.00 0.00 0.00 1.40
368 369 2.887783 ACCAACGACACATGCCAAATAA 59.112 40.909 0.00 0.00 0.00 1.40
369 370 2.227626 CACCAACGACACATGCCAAATA 59.772 45.455 0.00 0.00 0.00 1.40
370 371 1.000385 CACCAACGACACATGCCAAAT 60.000 47.619 0.00 0.00 0.00 2.32
371 372 0.383590 CACCAACGACACATGCCAAA 59.616 50.000 0.00 0.00 0.00 3.28
372 373 1.451337 CCACCAACGACACATGCCAA 61.451 55.000 0.00 0.00 0.00 4.52
373 374 1.896183 CCACCAACGACACATGCCA 60.896 57.895 0.00 0.00 0.00 4.92
374 375 1.452145 AACCACCAACGACACATGCC 61.452 55.000 0.00 0.00 0.00 4.40
375 376 0.317770 CAACCACCAACGACACATGC 60.318 55.000 0.00 0.00 0.00 4.06
376 377 0.317770 GCAACCACCAACGACACATG 60.318 55.000 0.00 0.00 0.00 3.21
377 378 1.452145 GGCAACCACCAACGACACAT 61.452 55.000 0.00 0.00 0.00 3.21
378 379 2.115911 GGCAACCACCAACGACACA 61.116 57.895 0.00 0.00 0.00 3.72
379 380 2.058829 CTGGCAACCACCAACGACAC 62.059 60.000 0.00 0.00 39.86 3.67
380 381 1.821759 CTGGCAACCACCAACGACA 60.822 57.895 0.00 0.00 39.86 4.35
381 382 0.889186 ATCTGGCAACCACCAACGAC 60.889 55.000 0.00 0.00 39.86 4.34
382 383 0.888736 CATCTGGCAACCACCAACGA 60.889 55.000 0.00 0.00 39.86 3.85
383 384 1.580942 CATCTGGCAACCACCAACG 59.419 57.895 0.00 0.00 39.86 4.10
384 385 0.539438 TCCATCTGGCAACCACCAAC 60.539 55.000 0.00 0.00 39.86 3.77
385 386 0.409092 ATCCATCTGGCAACCACCAA 59.591 50.000 0.00 0.00 39.86 3.67
386 387 0.409092 AATCCATCTGGCAACCACCA 59.591 50.000 0.00 0.00 38.29 4.17
387 388 1.560505 AAATCCATCTGGCAACCACC 58.439 50.000 0.00 0.00 34.44 4.61
388 389 3.683365 AAAAATCCATCTGGCAACCAC 57.317 42.857 0.00 0.00 34.44 4.16
440 441 9.744468 GTGAAAATTTAAGCCTACTCAAAAAGA 57.256 29.630 0.00 0.00 0.00 2.52
441 442 8.690840 CGTGAAAATTTAAGCCTACTCAAAAAG 58.309 33.333 0.00 0.00 0.00 2.27
442 443 8.407064 TCGTGAAAATTTAAGCCTACTCAAAAA 58.593 29.630 0.00 0.00 0.00 1.94
443 444 7.932335 TCGTGAAAATTTAAGCCTACTCAAAA 58.068 30.769 0.00 0.00 0.00 2.44
444 445 7.499321 TCGTGAAAATTTAAGCCTACTCAAA 57.501 32.000 0.00 0.00 0.00 2.69
445 446 7.361713 CCATCGTGAAAATTTAAGCCTACTCAA 60.362 37.037 0.00 0.00 0.00 3.02
446 447 6.093495 CCATCGTGAAAATTTAAGCCTACTCA 59.907 38.462 0.00 0.00 0.00 3.41
447 448 6.487103 CCATCGTGAAAATTTAAGCCTACTC 58.513 40.000 0.00 0.00 0.00 2.59
448 449 5.163652 GCCATCGTGAAAATTTAAGCCTACT 60.164 40.000 0.00 0.00 0.00 2.57
449 450 5.034797 GCCATCGTGAAAATTTAAGCCTAC 58.965 41.667 0.00 0.00 0.00 3.18
450 451 4.702612 TGCCATCGTGAAAATTTAAGCCTA 59.297 37.500 0.00 0.00 0.00 3.93
451 452 3.509575 TGCCATCGTGAAAATTTAAGCCT 59.490 39.130 0.00 0.00 0.00 4.58
452 453 3.843999 TGCCATCGTGAAAATTTAAGCC 58.156 40.909 0.00 0.00 0.00 4.35
453 454 4.201618 GCTTGCCATCGTGAAAATTTAAGC 60.202 41.667 0.00 0.00 0.00 3.09
454 455 4.922692 TGCTTGCCATCGTGAAAATTTAAG 59.077 37.500 0.00 0.00 0.00 1.85
455 456 4.876125 TGCTTGCCATCGTGAAAATTTAA 58.124 34.783 0.00 0.00 0.00 1.52
456 457 4.511617 TGCTTGCCATCGTGAAAATTTA 57.488 36.364 0.00 0.00 0.00 1.40
457 458 3.383620 TGCTTGCCATCGTGAAAATTT 57.616 38.095 0.00 0.00 0.00 1.82
458 459 3.056678 TCATGCTTGCCATCGTGAAAATT 60.057 39.130 0.00 0.00 29.71 1.82
459 460 2.492881 TCATGCTTGCCATCGTGAAAAT 59.507 40.909 0.00 0.00 29.71 1.82
460 461 1.885233 TCATGCTTGCCATCGTGAAAA 59.115 42.857 0.00 0.00 29.71 2.29
461 462 1.532523 TCATGCTTGCCATCGTGAAA 58.467 45.000 0.00 0.00 29.71 2.69
462 463 1.532523 TTCATGCTTGCCATCGTGAA 58.467 45.000 0.00 0.00 36.28 3.18
463 464 1.402613 CATTCATGCTTGCCATCGTGA 59.597 47.619 0.00 0.00 29.71 4.35
464 465 1.133598 ACATTCATGCTTGCCATCGTG 59.866 47.619 0.00 0.00 29.71 4.35
465 466 1.133598 CACATTCATGCTTGCCATCGT 59.866 47.619 0.00 0.00 29.71 3.73
466 467 1.402613 TCACATTCATGCTTGCCATCG 59.597 47.619 0.00 0.00 29.71 3.84
467 468 2.426024 ACTCACATTCATGCTTGCCATC 59.574 45.455 0.00 0.00 29.71 3.51
468 469 2.453521 ACTCACATTCATGCTTGCCAT 58.546 42.857 0.00 0.00 33.39 4.40
469 470 1.913778 ACTCACATTCATGCTTGCCA 58.086 45.000 0.00 0.00 0.00 4.92
470 471 4.439305 TTTACTCACATTCATGCTTGCC 57.561 40.909 0.00 0.00 0.00 4.52
471 472 8.638685 ATTTATTTACTCACATTCATGCTTGC 57.361 30.769 0.00 0.00 0.00 4.01
491 492 9.236006 GCTCCTACCATTCAATCACATATTTAT 57.764 33.333 0.00 0.00 0.00 1.40
492 493 8.217111 TGCTCCTACCATTCAATCACATATTTA 58.783 33.333 0.00 0.00 0.00 1.40
493 494 7.013655 GTGCTCCTACCATTCAATCACATATTT 59.986 37.037 0.00 0.00 0.00 1.40
494 495 6.488006 GTGCTCCTACCATTCAATCACATATT 59.512 38.462 0.00 0.00 0.00 1.28
495 496 6.000219 GTGCTCCTACCATTCAATCACATAT 59.000 40.000 0.00 0.00 0.00 1.78
496 497 5.104569 TGTGCTCCTACCATTCAATCACATA 60.105 40.000 0.00 0.00 0.00 2.29
497 498 4.202441 GTGCTCCTACCATTCAATCACAT 58.798 43.478 0.00 0.00 0.00 3.21
498 499 3.008923 TGTGCTCCTACCATTCAATCACA 59.991 43.478 0.00 0.00 0.00 3.58
499 500 3.609853 TGTGCTCCTACCATTCAATCAC 58.390 45.455 0.00 0.00 0.00 3.06
500 501 3.264193 ACTGTGCTCCTACCATTCAATCA 59.736 43.478 0.00 0.00 0.00 2.57
501 502 3.624861 CACTGTGCTCCTACCATTCAATC 59.375 47.826 0.00 0.00 0.00 2.67
502 503 3.264193 TCACTGTGCTCCTACCATTCAAT 59.736 43.478 2.12 0.00 0.00 2.57
503 504 2.637382 TCACTGTGCTCCTACCATTCAA 59.363 45.455 2.12 0.00 0.00 2.69
504 505 2.256306 TCACTGTGCTCCTACCATTCA 58.744 47.619 2.12 0.00 0.00 2.57
505 506 3.550437 ATCACTGTGCTCCTACCATTC 57.450 47.619 2.12 0.00 0.00 2.67
506 507 5.636903 AATATCACTGTGCTCCTACCATT 57.363 39.130 2.12 0.00 0.00 3.16
507 508 5.130975 TGAAATATCACTGTGCTCCTACCAT 59.869 40.000 2.12 0.00 0.00 3.55
508 509 4.469586 TGAAATATCACTGTGCTCCTACCA 59.530 41.667 2.12 0.00 0.00 3.25
509 510 5.023533 TGAAATATCACTGTGCTCCTACC 57.976 43.478 2.12 0.00 0.00 3.18
510 511 4.509600 GCTGAAATATCACTGTGCTCCTAC 59.490 45.833 2.12 0.00 0.00 3.18
511 512 4.406972 AGCTGAAATATCACTGTGCTCCTA 59.593 41.667 2.12 0.00 30.08 2.94
512 513 3.199508 AGCTGAAATATCACTGTGCTCCT 59.800 43.478 2.12 0.00 30.08 3.69
513 514 3.539604 AGCTGAAATATCACTGTGCTCC 58.460 45.455 2.12 0.00 30.08 4.70
514 515 4.033817 GTGAGCTGAAATATCACTGTGCTC 59.966 45.833 2.12 0.00 44.37 4.26
515 516 3.937706 GTGAGCTGAAATATCACTGTGCT 59.062 43.478 2.12 0.00 40.14 4.40
516 517 3.064545 GGTGAGCTGAAATATCACTGTGC 59.935 47.826 2.12 0.00 42.36 4.57
517 518 4.256110 TGGTGAGCTGAAATATCACTGTG 58.744 43.478 0.17 0.17 42.36 3.66
518 519 4.223700 TCTGGTGAGCTGAAATATCACTGT 59.776 41.667 0.00 0.00 42.36 3.55
519 520 4.569966 GTCTGGTGAGCTGAAATATCACTG 59.430 45.833 0.00 0.00 42.36 3.66
520 521 4.469227 AGTCTGGTGAGCTGAAATATCACT 59.531 41.667 0.00 0.00 42.36 3.41
521 522 4.764172 AGTCTGGTGAGCTGAAATATCAC 58.236 43.478 0.00 0.00 42.07 3.06
522 523 5.426689 AAGTCTGGTGAGCTGAAATATCA 57.573 39.130 0.00 0.00 0.00 2.15
523 524 7.550906 ACTTAAAGTCTGGTGAGCTGAAATATC 59.449 37.037 0.00 0.00 0.00 1.63
524 525 7.398024 ACTTAAAGTCTGGTGAGCTGAAATAT 58.602 34.615 0.00 0.00 0.00 1.28
525 526 6.769512 ACTTAAAGTCTGGTGAGCTGAAATA 58.230 36.000 0.00 0.00 0.00 1.40
526 527 5.625150 ACTTAAAGTCTGGTGAGCTGAAAT 58.375 37.500 0.00 0.00 0.00 2.17
527 528 5.036117 ACTTAAAGTCTGGTGAGCTGAAA 57.964 39.130 0.00 0.00 0.00 2.69
528 529 4.689612 ACTTAAAGTCTGGTGAGCTGAA 57.310 40.909 0.00 0.00 0.00 3.02
529 530 4.345257 AGAACTTAAAGTCTGGTGAGCTGA 59.655 41.667 0.00 0.00 0.00 4.26
530 531 4.636249 AGAACTTAAAGTCTGGTGAGCTG 58.364 43.478 0.00 0.00 0.00 4.24
531 532 4.965200 AGAACTTAAAGTCTGGTGAGCT 57.035 40.909 0.00 0.00 0.00 4.09
532 533 7.387948 TCATTTAGAACTTAAAGTCTGGTGAGC 59.612 37.037 0.00 0.00 0.00 4.26
533 534 8.833231 TCATTTAGAACTTAAAGTCTGGTGAG 57.167 34.615 0.00 0.00 0.00 3.51
534 535 9.273016 CTTCATTTAGAACTTAAAGTCTGGTGA 57.727 33.333 0.00 0.00 31.61 4.02
535 536 9.057089 ACTTCATTTAGAACTTAAAGTCTGGTG 57.943 33.333 0.00 0.00 31.61 4.17
536 537 9.057089 CACTTCATTTAGAACTTAAAGTCTGGT 57.943 33.333 0.00 0.00 31.61 4.00
537 538 8.017946 GCACTTCATTTAGAACTTAAAGTCTGG 58.982 37.037 0.00 0.00 31.61 3.86
538 539 8.778358 AGCACTTCATTTAGAACTTAAAGTCTG 58.222 33.333 0.00 0.00 31.61 3.51
539 540 8.910351 AGCACTTCATTTAGAACTTAAAGTCT 57.090 30.769 0.00 0.00 31.61 3.24
540 541 7.952637 CGAGCACTTCATTTAGAACTTAAAGTC 59.047 37.037 0.00 0.00 31.61 3.01
541 542 7.441458 ACGAGCACTTCATTTAGAACTTAAAGT 59.559 33.333 0.00 0.00 31.61 2.66
542 543 7.797819 ACGAGCACTTCATTTAGAACTTAAAG 58.202 34.615 0.00 0.00 31.61 1.85
543 544 7.724305 ACGAGCACTTCATTTAGAACTTAAA 57.276 32.000 0.00 0.00 31.61 1.52
544 545 8.997621 ATACGAGCACTTCATTTAGAACTTAA 57.002 30.769 0.00 0.00 31.61 1.85
545 546 8.997621 AATACGAGCACTTCATTTAGAACTTA 57.002 30.769 0.00 0.00 31.61 2.24
546 547 7.907214 AATACGAGCACTTCATTTAGAACTT 57.093 32.000 0.00 0.00 31.61 2.66
547 548 7.907214 AAATACGAGCACTTCATTTAGAACT 57.093 32.000 0.00 0.00 31.61 3.01
548 549 8.950403 AAAAATACGAGCACTTCATTTAGAAC 57.050 30.769 0.00 0.00 31.61 3.01
549 550 8.999431 AGAAAAATACGAGCACTTCATTTAGAA 58.001 29.630 0.00 0.00 34.41 2.10
550 551 8.443160 CAGAAAAATACGAGCACTTCATTTAGA 58.557 33.333 0.00 0.00 0.00 2.10
551 552 8.443160 TCAGAAAAATACGAGCACTTCATTTAG 58.557 33.333 0.00 0.00 0.00 1.85
552 553 8.317891 TCAGAAAAATACGAGCACTTCATTTA 57.682 30.769 0.00 0.00 0.00 1.40
553 554 7.202016 TCAGAAAAATACGAGCACTTCATTT 57.798 32.000 0.00 0.00 0.00 2.32
554 555 6.801539 TCAGAAAAATACGAGCACTTCATT 57.198 33.333 0.00 0.00 0.00 2.57
555 556 6.801539 TTCAGAAAAATACGAGCACTTCAT 57.198 33.333 0.00 0.00 0.00 2.57
556 557 6.801539 ATTCAGAAAAATACGAGCACTTCA 57.198 33.333 0.00 0.00 0.00 3.02
557 558 9.774742 ATAAATTCAGAAAAATACGAGCACTTC 57.225 29.630 0.00 0.00 0.00 3.01
587 588 9.848710 GCCTTTATAGTAATCCTTAGAAGGTTT 57.151 33.333 8.17 8.70 46.54 3.27
588 589 8.148999 CGCCTTTATAGTAATCCTTAGAAGGTT 58.851 37.037 8.17 5.12 46.54 3.50
589 590 7.289549 ACGCCTTTATAGTAATCCTTAGAAGGT 59.710 37.037 8.17 0.00 46.54 3.50
591 592 8.578151 AGACGCCTTTATAGTAATCCTTAGAAG 58.422 37.037 0.00 0.00 0.00 2.85
592 593 8.358148 CAGACGCCTTTATAGTAATCCTTAGAA 58.642 37.037 0.00 0.00 0.00 2.10
593 594 7.504911 ACAGACGCCTTTATAGTAATCCTTAGA 59.495 37.037 0.00 0.00 0.00 2.10
594 595 7.595502 CACAGACGCCTTTATAGTAATCCTTAG 59.404 40.741 0.00 0.00 0.00 2.18
595 596 7.286087 TCACAGACGCCTTTATAGTAATCCTTA 59.714 37.037 0.00 0.00 0.00 2.69
596 597 6.097839 TCACAGACGCCTTTATAGTAATCCTT 59.902 38.462 0.00 0.00 0.00 3.36
597 598 5.597182 TCACAGACGCCTTTATAGTAATCCT 59.403 40.000 0.00 0.00 0.00 3.24
598 599 5.690857 GTCACAGACGCCTTTATAGTAATCC 59.309 44.000 0.00 0.00 0.00 3.01
599 600 6.270815 TGTCACAGACGCCTTTATAGTAATC 58.729 40.000 0.00 0.00 34.95 1.75
600 601 6.216801 TGTCACAGACGCCTTTATAGTAAT 57.783 37.500 0.00 0.00 34.95 1.89
601 602 5.648178 TGTCACAGACGCCTTTATAGTAA 57.352 39.130 0.00 0.00 34.95 2.24
602 603 5.648178 TTGTCACAGACGCCTTTATAGTA 57.352 39.130 0.00 0.00 34.95 1.82
603 604 4.530710 TTGTCACAGACGCCTTTATAGT 57.469 40.909 0.00 0.00 34.95 2.12
604 605 6.422776 AAATTGTCACAGACGCCTTTATAG 57.577 37.500 0.00 0.00 34.95 1.31
605 606 5.062934 CGAAATTGTCACAGACGCCTTTATA 59.937 40.000 0.00 0.00 34.95 0.98
606 607 4.142902 CGAAATTGTCACAGACGCCTTTAT 60.143 41.667 0.00 0.00 34.95 1.40
607 608 3.185594 CGAAATTGTCACAGACGCCTTTA 59.814 43.478 0.00 0.00 34.95 1.85
608 609 2.032030 CGAAATTGTCACAGACGCCTTT 60.032 45.455 0.00 0.00 34.95 3.11
609 610 1.531149 CGAAATTGTCACAGACGCCTT 59.469 47.619 0.00 0.00 34.95 4.35
610 611 1.148310 CGAAATTGTCACAGACGCCT 58.852 50.000 0.00 0.00 34.95 5.52
611 612 0.865769 ACGAAATTGTCACAGACGCC 59.134 50.000 0.00 0.00 34.95 5.68
612 613 1.525197 TGACGAAATTGTCACAGACGC 59.475 47.619 0.00 0.00 43.62 5.19
625 626 8.761497 CGGCTAATTATCTTAAGATTGACGAAA 58.239 33.333 22.60 10.45 36.05 3.46
626 627 7.924412 ACGGCTAATTATCTTAAGATTGACGAA 59.076 33.333 22.60 11.13 36.05 3.85
627 628 7.431249 ACGGCTAATTATCTTAAGATTGACGA 58.569 34.615 22.60 1.99 36.05 4.20
628 629 7.595502 AGACGGCTAATTATCTTAAGATTGACG 59.404 37.037 22.60 20.45 36.05 4.35
629 630 8.819643 AGACGGCTAATTATCTTAAGATTGAC 57.180 34.615 22.60 9.75 36.05 3.18
630 631 8.638873 TGAGACGGCTAATTATCTTAAGATTGA 58.361 33.333 22.60 12.52 36.05 2.57
631 632 8.818141 TGAGACGGCTAATTATCTTAAGATTG 57.182 34.615 22.60 9.66 36.05 2.67
632 633 8.643324 ACTGAGACGGCTAATTATCTTAAGATT 58.357 33.333 22.60 8.97 36.05 2.40
633 634 8.184304 ACTGAGACGGCTAATTATCTTAAGAT 57.816 34.615 21.28 21.28 38.51 2.40
634 635 7.502895 AGACTGAGACGGCTAATTATCTTAAGA 59.497 37.037 7.82 7.82 0.00 2.10
635 636 7.653647 AGACTGAGACGGCTAATTATCTTAAG 58.346 38.462 0.00 0.00 0.00 1.85
636 637 7.502895 AGAGACTGAGACGGCTAATTATCTTAA 59.497 37.037 0.00 0.00 0.00 1.85
637 638 6.999272 AGAGACTGAGACGGCTAATTATCTTA 59.001 38.462 0.00 0.00 0.00 2.10
638 639 5.830991 AGAGACTGAGACGGCTAATTATCTT 59.169 40.000 0.00 0.00 0.00 2.40
639 640 5.381757 AGAGACTGAGACGGCTAATTATCT 58.618 41.667 0.00 0.00 0.00 1.98
640 641 5.615984 CGAGAGACTGAGACGGCTAATTATC 60.616 48.000 0.00 0.00 0.00 1.75
641 642 4.214545 CGAGAGACTGAGACGGCTAATTAT 59.785 45.833 0.00 0.00 0.00 1.28
642 643 3.560481 CGAGAGACTGAGACGGCTAATTA 59.440 47.826 0.00 0.00 0.00 1.40
643 644 2.356382 CGAGAGACTGAGACGGCTAATT 59.644 50.000 0.00 0.00 0.00 1.40
644 645 1.944024 CGAGAGACTGAGACGGCTAAT 59.056 52.381 0.00 0.00 0.00 1.73
645 646 1.066358 TCGAGAGACTGAGACGGCTAA 60.066 52.381 0.00 0.00 33.31 3.09
646 647 0.535797 TCGAGAGACTGAGACGGCTA 59.464 55.000 0.00 0.00 33.31 3.93
647 648 0.321741 TTCGAGAGACTGAGACGGCT 60.322 55.000 0.00 0.00 41.84 5.52
648 649 0.098025 CTTCGAGAGACTGAGACGGC 59.902 60.000 0.00 0.00 41.84 5.68
649 650 0.730265 CCTTCGAGAGACTGAGACGG 59.270 60.000 0.00 0.00 41.84 4.79
650 651 1.444836 ACCTTCGAGAGACTGAGACG 58.555 55.000 0.00 0.00 41.84 4.18
651 652 5.570234 AAATACCTTCGAGAGACTGAGAC 57.430 43.478 0.00 0.00 41.84 3.36
652 653 7.662258 CCTATAAATACCTTCGAGAGACTGAGA 59.338 40.741 0.00 0.00 41.84 3.27
653 654 7.094549 CCCTATAAATACCTTCGAGAGACTGAG 60.095 44.444 0.00 0.00 41.84 3.35
654 655 6.715718 CCCTATAAATACCTTCGAGAGACTGA 59.284 42.308 0.00 0.00 41.84 3.41
655 656 6.490721 ACCCTATAAATACCTTCGAGAGACTG 59.509 42.308 0.00 0.00 41.84 3.51
656 657 6.490721 CACCCTATAAATACCTTCGAGAGACT 59.509 42.308 0.00 0.00 41.84 3.24
657 658 6.264970 ACACCCTATAAATACCTTCGAGAGAC 59.735 42.308 0.00 0.00 41.84 3.36
658 659 6.264744 CACACCCTATAAATACCTTCGAGAGA 59.735 42.308 0.00 0.00 39.20 3.10
659 660 6.040616 ACACACCCTATAAATACCTTCGAGAG 59.959 42.308 0.00 0.00 0.00 3.20
660 661 5.895534 ACACACCCTATAAATACCTTCGAGA 59.104 40.000 0.00 0.00 0.00 4.04
661 662 5.983720 CACACACCCTATAAATACCTTCGAG 59.016 44.000 0.00 0.00 0.00 4.04
662 663 5.422970 ACACACACCCTATAAATACCTTCGA 59.577 40.000 0.00 0.00 0.00 3.71
663 664 5.667466 ACACACACCCTATAAATACCTTCG 58.333 41.667 0.00 0.00 0.00 3.79
664 665 7.107542 TGAACACACACCCTATAAATACCTTC 58.892 38.462 0.00 0.00 0.00 3.46
665 666 7.023171 TGAACACACACCCTATAAATACCTT 57.977 36.000 0.00 0.00 0.00 3.50
666 667 6.630203 TGAACACACACCCTATAAATACCT 57.370 37.500 0.00 0.00 0.00 3.08
667 668 8.967664 TTATGAACACACACCCTATAAATACC 57.032 34.615 0.00 0.00 0.00 2.73
670 671 9.528489 ACTTTTATGAACACACACCCTATAAAT 57.472 29.630 0.00 0.00 0.00 1.40
671 672 8.788806 CACTTTTATGAACACACACCCTATAAA 58.211 33.333 0.00 0.00 0.00 1.40
672 673 8.158132 TCACTTTTATGAACACACACCCTATAA 58.842 33.333 0.00 0.00 0.00 0.98
673 674 7.681679 TCACTTTTATGAACACACACCCTATA 58.318 34.615 0.00 0.00 0.00 1.31
674 675 6.539173 TCACTTTTATGAACACACACCCTAT 58.461 36.000 0.00 0.00 0.00 2.57
675 676 5.931294 TCACTTTTATGAACACACACCCTA 58.069 37.500 0.00 0.00 0.00 3.53
676 677 4.787551 TCACTTTTATGAACACACACCCT 58.212 39.130 0.00 0.00 0.00 4.34
677 678 5.508200 TTCACTTTTATGAACACACACCC 57.492 39.130 0.00 0.00 33.62 4.61
678 679 6.503524 ACATTCACTTTTATGAACACACACC 58.496 36.000 0.00 0.00 41.29 4.16
679 680 9.117145 CATACATTCACTTTTATGAACACACAC 57.883 33.333 0.00 0.00 41.29 3.82
680 681 8.845227 ACATACATTCACTTTTATGAACACACA 58.155 29.630 0.00 0.00 41.29 3.72
681 682 9.117145 CACATACATTCACTTTTATGAACACAC 57.883 33.333 0.00 0.00 41.29 3.82
682 683 7.807433 GCACATACATTCACTTTTATGAACACA 59.193 33.333 0.00 0.00 41.29 3.72
683 684 7.807433 TGCACATACATTCACTTTTATGAACAC 59.193 33.333 0.00 0.00 41.29 3.32
684 685 7.880105 TGCACATACATTCACTTTTATGAACA 58.120 30.769 0.00 0.00 41.29 3.18
685 686 8.915871 ATGCACATACATTCACTTTTATGAAC 57.084 30.769 0.00 0.00 41.29 3.18
688 689 9.955208 ACATATGCACATACATTCACTTTTATG 57.045 29.630 1.58 0.00 0.00 1.90
689 690 9.955208 CACATATGCACATACATTCACTTTTAT 57.045 29.630 1.58 0.00 0.00 1.40
690 691 8.955388 ACACATATGCACATACATTCACTTTTA 58.045 29.630 1.58 0.00 0.00 1.52
691 692 7.756272 CACACATATGCACATACATTCACTTTT 59.244 33.333 1.58 0.00 0.00 2.27
692 693 7.121020 TCACACATATGCACATACATTCACTTT 59.879 33.333 1.58 0.00 0.00 2.66
693 694 6.598850 TCACACATATGCACATACATTCACTT 59.401 34.615 1.58 0.00 0.00 3.16
694 695 6.114767 TCACACATATGCACATACATTCACT 58.885 36.000 1.58 0.00 0.00 3.41
695 696 6.362210 TCACACATATGCACATACATTCAC 57.638 37.500 1.58 0.00 0.00 3.18
696 697 5.528320 CCTCACACATATGCACATACATTCA 59.472 40.000 1.58 0.00 0.00 2.57
697 698 5.561532 GCCTCACACATATGCACATACATTC 60.562 44.000 1.58 0.00 0.00 2.67
698 699 4.276678 GCCTCACACATATGCACATACATT 59.723 41.667 1.58 0.00 0.00 2.71
699 700 3.817084 GCCTCACACATATGCACATACAT 59.183 43.478 1.58 0.00 0.00 2.29
700 701 3.118298 AGCCTCACACATATGCACATACA 60.118 43.478 1.58 0.00 0.00 2.29
701 702 3.470709 AGCCTCACACATATGCACATAC 58.529 45.455 1.58 0.00 0.00 2.39
702 703 3.389002 AGAGCCTCACACATATGCACATA 59.611 43.478 1.58 0.00 0.00 2.29
703 704 2.172082 AGAGCCTCACACATATGCACAT 59.828 45.455 1.58 0.00 0.00 3.21
704 705 1.556451 AGAGCCTCACACATATGCACA 59.444 47.619 1.58 0.00 0.00 4.57
705 706 2.208431 GAGAGCCTCACACATATGCAC 58.792 52.381 1.58 0.00 0.00 4.57
706 707 1.139654 GGAGAGCCTCACACATATGCA 59.860 52.381 1.58 0.00 31.08 3.96
707 708 1.871408 CGGAGAGCCTCACACATATGC 60.871 57.143 1.58 0.00 31.08 3.14
708 709 1.410517 ACGGAGAGCCTCACACATATG 59.589 52.381 0.00 0.00 31.08 1.78
709 710 1.683917 GACGGAGAGCCTCACACATAT 59.316 52.381 0.00 0.00 31.08 1.78
710 711 1.103803 GACGGAGAGCCTCACACATA 58.896 55.000 0.00 0.00 31.08 2.29
711 712 1.608717 GGACGGAGAGCCTCACACAT 61.609 60.000 0.00 0.00 31.08 3.21
712 713 2.276116 GGACGGAGAGCCTCACACA 61.276 63.158 0.00 0.00 31.08 3.72
713 714 2.574399 GGACGGAGAGCCTCACAC 59.426 66.667 0.00 0.00 31.08 3.82
714 715 3.062466 CGGACGGAGAGCCTCACA 61.062 66.667 0.00 0.00 31.08 3.58
715 716 3.063084 ACGGACGGAGAGCCTCAC 61.063 66.667 0.00 0.00 31.08 3.51
716 717 3.062466 CACGGACGGAGAGCCTCA 61.062 66.667 0.00 0.00 31.08 3.86
717 718 4.500116 GCACGGACGGAGAGCCTC 62.500 72.222 0.00 0.00 0.00 4.70
719 720 4.803426 CAGCACGGACGGAGAGCC 62.803 72.222 0.00 0.00 0.00 4.70
720 721 3.973267 GACAGCACGGACGGAGAGC 62.973 68.421 0.00 0.00 0.00 4.09
721 722 1.025113 TAGACAGCACGGACGGAGAG 61.025 60.000 0.00 0.00 0.00 3.20
722 723 0.607217 TTAGACAGCACGGACGGAGA 60.607 55.000 0.00 0.00 0.00 3.71
723 724 0.242825 TTTAGACAGCACGGACGGAG 59.757 55.000 0.00 0.00 0.00 4.63
724 725 0.675083 TTTTAGACAGCACGGACGGA 59.325 50.000 0.00 0.00 0.00 4.69
725 726 1.504359 TTTTTAGACAGCACGGACGG 58.496 50.000 0.00 0.00 0.00 4.79
743 744 3.689161 TGATTCCGATGACGCTCATTTTT 59.311 39.130 2.70 0.00 37.20 1.94
744 745 3.063997 GTGATTCCGATGACGCTCATTTT 59.936 43.478 2.70 0.00 37.20 1.82
745 746 2.609459 GTGATTCCGATGACGCTCATTT 59.391 45.455 2.70 0.00 37.20 2.32
746 747 2.205074 GTGATTCCGATGACGCTCATT 58.795 47.619 2.70 0.00 37.20 2.57
747 748 1.858091 GTGATTCCGATGACGCTCAT 58.142 50.000 0.91 0.91 40.34 2.90
748 749 0.525455 CGTGATTCCGATGACGCTCA 60.525 55.000 0.00 0.00 36.17 4.26
749 750 0.248498 TCGTGATTCCGATGACGCTC 60.248 55.000 0.00 0.00 41.72 5.03
793 794 7.466455 CGAGATCCAGACCTGACATTTTTAATG 60.466 40.741 0.00 0.00 0.00 1.90
819 820 7.042992 CCTTTTCCTTTCCACGTTGAAAATAAC 60.043 37.037 14.85 0.00 35.21 1.89
826 827 3.284793 TCCTTTTCCTTTCCACGTTGA 57.715 42.857 0.00 0.00 0.00 3.18
1056 1059 0.901827 ATGCGGTGTGAGTGTGGATA 59.098 50.000 0.00 0.00 0.00 2.59
1164 1534 1.984570 CGAGAGGAGGGACAGGCAA 60.985 63.158 0.00 0.00 0.00 4.52
1407 1777 3.764049 GTGACGAGTGCCGCGAAC 61.764 66.667 8.23 5.60 43.32 3.95
1473 1843 3.066190 TCGAAGTCGCCCATCCGT 61.066 61.111 0.00 0.00 39.60 4.69
1572 1942 1.993370 GCGCTGACCATCCGATTATAC 59.007 52.381 0.00 0.00 0.00 1.47
1815 2185 1.667756 GCGTTGTATGTGACCTCGTCA 60.668 52.381 0.00 0.00 40.50 4.35
1956 2326 3.868200 AAACCGGCCTGCCTGGAAG 62.868 63.158 20.69 0.00 38.35 3.46
1965 2335 2.677228 CCCTCATCAAACCGGCCT 59.323 61.111 0.00 0.00 0.00 5.19
2079 2449 4.033009 TGAGTAATGAGAAGGCATCCTCA 58.967 43.478 0.00 0.00 42.78 3.86
2176 2546 3.643792 GACTGAGCCATATCCAGGTTACT 59.356 47.826 0.00 0.00 32.52 2.24
2178 2548 3.653164 TGACTGAGCCATATCCAGGTTA 58.347 45.455 0.00 0.00 32.52 2.85
2189 2559 1.375908 GACCGCAATGACTGAGCCA 60.376 57.895 0.00 0.00 0.00 4.75
2231 2601 0.663153 GTGTGTTGTTGAGTCCAGGC 59.337 55.000 0.00 0.00 0.00 4.85
2247 2617 7.443272 CACAGTCCACATATCATGATATTGTGT 59.557 37.037 30.63 23.69 34.06 3.72
2292 2662 1.000385 TGAAAAACCTGCATTGCCTCG 60.000 47.619 6.12 0.00 0.00 4.63
2701 3071 6.708054 CCATCAATTAGAGTCCCATAAGTGAC 59.292 42.308 3.72 0.00 38.39 3.67
2853 3223 1.267806 CAGAGGTTGATTGCTTGCGTT 59.732 47.619 0.00 0.00 0.00 4.84
3003 3373 1.001633 GGGTTTGAGCTAACGGAGTCA 59.998 52.381 0.00 0.00 45.00 3.41
3123 3493 0.033366 TAAGAAGAGCACAGCACGCA 59.967 50.000 0.00 0.00 0.00 5.24
3621 3991 5.221303 ACAGTGCAAATGTATCACAGCTTTT 60.221 36.000 4.06 0.00 47.00 2.27
3754 4124 7.060600 TCAAGTAAACATGCATTACTCGAAG 57.939 36.000 19.26 12.43 41.49 3.79
3854 4224 3.936902 TTTTTCACTTCCAGAACGACG 57.063 42.857 0.00 0.00 0.00 5.12
3858 4228 4.746611 CAGCCAATTTTTCACTTCCAGAAC 59.253 41.667 0.00 0.00 0.00 3.01
3950 4320 1.425412 ATTGTAAGTGTCGTGCGGTC 58.575 50.000 0.00 0.00 0.00 4.79
3987 4357 4.153117 GGATACTGCAGTTCAACACAGAAG 59.847 45.833 27.06 0.16 34.25 2.85
4161 4533 8.801715 TTTGCTAAGTTGCTTTCTTCTTATTG 57.198 30.769 0.00 0.00 0.00 1.90
4213 4586 3.763057 AGGCAAATAAAACTCCCGACTT 58.237 40.909 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.