Multiple sequence alignment - TraesCS5D01G165200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G165200 chr5D 100.000 6977 0 0 1 6977 256728608 256735584 0.000000e+00 12885.0
1 TraesCS5D01G165200 chr5D 86.878 1105 108 21 1668 2746 493828144 493827051 0.000000e+00 1203.0
2 TraesCS5D01G165200 chr5D 86.780 295 30 5 1238 1532 493828532 493828247 3.140000e-83 320.0
3 TraesCS5D01G165200 chr5B 95.600 2500 62 19 788 3246 290814062 290816554 0.000000e+00 3964.0
4 TraesCS5D01G165200 chr5B 94.379 1868 84 12 3343 5203 290816749 290818602 0.000000e+00 2848.0
5 TraesCS5D01G165200 chr5B 94.656 524 25 2 5236 5758 290818603 290819124 0.000000e+00 809.0
6 TraesCS5D01G165200 chr5B 98.265 461 6 2 5778 6236 290819201 290819661 0.000000e+00 806.0
7 TraesCS5D01G165200 chr5B 83.570 493 54 19 253 728 290813488 290813970 2.990000e-118 436.0
8 TraesCS5D01G165200 chr5B 90.038 261 20 4 6361 6615 69282636 69282896 4.030000e-87 333.0
9 TraesCS5D01G165200 chr5B 86.139 303 25 7 6648 6937 290819733 290820031 1.890000e-80 311.0
10 TraesCS5D01G165200 chr5B 93.333 75 3 1 3245 3319 290816678 290816750 7.400000e-20 110.0
11 TraesCS5D01G165200 chr5A 96.663 1918 56 7 2345 4259 341665370 341667282 0.000000e+00 3181.0
12 TraesCS5D01G165200 chr5A 93.170 1918 66 27 459 2326 341658221 341660123 0.000000e+00 2756.0
13 TraesCS5D01G165200 chr5A 96.426 1203 34 6 5086 6285 341668031 341669227 0.000000e+00 1975.0
14 TraesCS5D01G165200 chr5A 87.686 471 49 6 1 465 341657439 341657906 2.210000e-149 540.0
15 TraesCS5D01G165200 chr5A 92.830 265 16 3 4292 4555 341667280 341667542 1.420000e-101 381.0
16 TraesCS5D01G165200 chr5A 89.836 305 8 2 4716 5020 341667718 341667999 3.070000e-98 370.0
17 TraesCS5D01G165200 chr5A 86.751 317 20 11 6643 6942 341669262 341669573 4.030000e-87 333.0
18 TraesCS5D01G165200 chr5A 96.078 153 5 1 4529 4680 341667560 341667712 1.500000e-61 248.0
19 TraesCS5D01G165200 chr3D 87.423 978 86 19 1799 2749 548523760 548524727 0.000000e+00 1090.0
20 TraesCS5D01G165200 chr3D 89.969 648 55 8 2266 2910 523566898 523567538 0.000000e+00 828.0
21 TraesCS5D01G165200 chr3D 87.772 368 35 1 1159 1526 523565527 523565884 8.370000e-114 422.0
22 TraesCS5D01G165200 chr3D 80.000 305 16 19 1940 2231 523566632 523566904 4.300000e-42 183.0
23 TraesCS5D01G165200 chr3D 95.833 48 2 0 1738 1785 548523760 548523713 2.090000e-10 78.7
24 TraesCS5D01G165200 chr3D 82.857 70 8 4 213 279 96938915 96938983 7.560000e-05 60.2
25 TraesCS5D01G165200 chrUn 86.061 782 85 15 2367 3140 299168577 299169342 0.000000e+00 819.0
26 TraesCS5D01G165200 chrUn 85.470 585 64 11 1668 2233 326746210 326745628 2.170000e-164 590.0
27 TraesCS5D01G165200 chr7D 86.061 782 85 15 2367 3140 612452560 612451795 0.000000e+00 819.0
28 TraesCS5D01G165200 chr7D 85.714 784 86 17 2367 3140 13326734 13327501 0.000000e+00 804.0
29 TraesCS5D01G165200 chr7D 90.182 275 18 6 6348 6615 539382094 539381822 4.000000e-92 350.0
30 TraesCS5D01G165200 chr7D 90.458 262 19 3 6364 6619 478152835 478152574 2.410000e-89 340.0
31 TraesCS5D01G165200 chr6D 86.061 782 85 15 2367 3140 14174039 14174804 0.000000e+00 819.0
32 TraesCS5D01G165200 chr6D 85.951 783 84 16 2367 3140 54362575 54363340 0.000000e+00 813.0
33 TraesCS5D01G165200 chr6D 91.473 258 16 4 6364 6615 28048900 28048643 4.000000e-92 350.0
34 TraesCS5D01G165200 chr6D 91.440 257 16 4 6365 6615 251231695 251231951 1.440000e-91 348.0
35 TraesCS5D01G165200 chr6D 90.805 261 18 4 6361 6615 179949471 179949731 1.860000e-90 344.0
36 TraesCS5D01G165200 chr6D 91.753 194 14 1 2175 2368 14173766 14173957 1.150000e-67 268.0
37 TraesCS5D01G165200 chr6D 91.753 194 14 1 2175 2368 54362302 54362493 1.150000e-67 268.0
38 TraesCS5D01G165200 chr6D 91.753 194 14 1 2175 2368 414567656 414567847 1.150000e-67 268.0
39 TraesCS5D01G165200 chr4D 85.934 782 86 15 2367 3140 484189475 484188710 0.000000e+00 813.0
40 TraesCS5D01G165200 chr4D 91.753 194 14 1 2175 2368 484189748 484189557 1.150000e-67 268.0
41 TraesCS5D01G165200 chr1A 85.299 585 64 12 1668 2233 580534298 580534879 1.010000e-162 584.0
42 TraesCS5D01G165200 chr1A 85.299 585 65 11 1668 2233 580547602 580548184 1.010000e-162 584.0
43 TraesCS5D01G165200 chr1A 91.440 257 16 3 6365 6615 540723172 540722916 1.440000e-91 348.0
44 TraesCS5D01G165200 chr1A 90.789 76 7 0 1384 1459 580547369 580547444 1.240000e-17 102.0
45 TraesCS5D01G165200 chr1A 82.857 70 8 4 213 279 193167277 193167209 7.560000e-05 60.2
46 TraesCS5D01G165200 chr7B 84.014 563 71 10 977 1532 418193606 418194156 2.230000e-144 523.0
47 TraesCS5D01G165200 chr7B 82.819 454 67 10 5534 5985 418202937 418203381 5.070000e-106 396.0
48 TraesCS5D01G165200 chr7B 84.790 309 36 6 3610 3907 418202457 418202765 4.090000e-77 300.0
49 TraesCS5D01G165200 chr6A 91.188 261 17 4 6361 6615 588602120 588602380 4.000000e-92 350.0
50 TraesCS5D01G165200 chr6A 91.188 261 17 3 6361 6615 600261225 600260965 4.000000e-92 350.0
51 TraesCS5D01G165200 chr2B 92.268 194 13 1 2175 2368 657934093 657933902 2.480000e-69 274.0
52 TraesCS5D01G165200 chr3A 82.857 70 8 4 213 279 92174439 92174371 7.560000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G165200 chr5D 256728608 256735584 6976 False 12885.000000 12885 100.000000 1 6977 1 chr5D.!!$F1 6976
1 TraesCS5D01G165200 chr5D 493827051 493828532 1481 True 761.500000 1203 86.829000 1238 2746 2 chr5D.!!$R1 1508
2 TraesCS5D01G165200 chr5B 290813488 290820031 6543 False 1326.285714 3964 92.277429 253 6937 7 chr5B.!!$F2 6684
3 TraesCS5D01G165200 chr5A 341657439 341660123 2684 False 1648.000000 2756 90.428000 1 2326 2 chr5A.!!$F1 2325
4 TraesCS5D01G165200 chr5A 341665370 341669573 4203 False 1081.333333 3181 93.097333 2345 6942 6 chr5A.!!$F2 4597
5 TraesCS5D01G165200 chr3D 548523760 548524727 967 False 1090.000000 1090 87.423000 1799 2749 1 chr3D.!!$F2 950
6 TraesCS5D01G165200 chr3D 523565527 523567538 2011 False 477.666667 828 85.913667 1159 2910 3 chr3D.!!$F3 1751
7 TraesCS5D01G165200 chrUn 299168577 299169342 765 False 819.000000 819 86.061000 2367 3140 1 chrUn.!!$F1 773
8 TraesCS5D01G165200 chrUn 326745628 326746210 582 True 590.000000 590 85.470000 1668 2233 1 chrUn.!!$R1 565
9 TraesCS5D01G165200 chr7D 612451795 612452560 765 True 819.000000 819 86.061000 2367 3140 1 chr7D.!!$R3 773
10 TraesCS5D01G165200 chr7D 13326734 13327501 767 False 804.000000 804 85.714000 2367 3140 1 chr7D.!!$F1 773
11 TraesCS5D01G165200 chr6D 14173766 14174804 1038 False 543.500000 819 88.907000 2175 3140 2 chr6D.!!$F4 965
12 TraesCS5D01G165200 chr6D 54362302 54363340 1038 False 540.500000 813 88.852000 2175 3140 2 chr6D.!!$F5 965
13 TraesCS5D01G165200 chr4D 484188710 484189748 1038 True 540.500000 813 88.843500 2175 3140 2 chr4D.!!$R1 965
14 TraesCS5D01G165200 chr1A 580534298 580534879 581 False 584.000000 584 85.299000 1668 2233 1 chr1A.!!$F1 565
15 TraesCS5D01G165200 chr1A 580547369 580548184 815 False 343.000000 584 88.044000 1384 2233 2 chr1A.!!$F2 849
16 TraesCS5D01G165200 chr7B 418193606 418194156 550 False 523.000000 523 84.014000 977 1532 1 chr7B.!!$F1 555
17 TraesCS5D01G165200 chr7B 418202457 418203381 924 False 348.000000 396 83.804500 3610 5985 2 chr7B.!!$F2 2375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.108756 AGCCTCGACCGTTTTAGAGC 60.109 55.00 0.00 0.00 0.00 4.09 F
366 373 0.178973 TGGGCCTCGTGCTATAGCTA 60.179 55.00 24.61 9.27 42.66 3.32 F
528 858 0.250727 AAAAAGTCCAGCTGCCGCTA 60.251 50.00 8.66 0.00 46.99 4.26 F
947 1340 0.552367 ACCATCCCATCCCACCAGAA 60.552 55.00 0.00 0.00 0.00 3.02 F
1557 1985 1.257539 GTCGTTTCTCGTCATCGGTC 58.742 55.00 0.00 0.00 40.80 4.79 F
2116 2939 3.956199 AGGCATGCTGCTGTAACAAATAT 59.044 39.13 18.92 0.00 44.28 1.28 F
3557 4631 0.811281 GAAATCAGGCCGGGTGAAAG 59.189 55.00 2.18 0.00 0.00 2.62 F
4444 5531 0.035343 GCTACCCCAGTTCCTGAACC 60.035 60.00 6.41 0.00 42.06 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2160 0.318441 CTCGACCTGCCAGTCAAAGA 59.682 55.000 4.34 0.00 36.52 2.52 R
2164 2990 4.003648 AGATGAAAGAATGAACCGTGACC 58.996 43.478 0.00 0.00 0.00 4.02 R
2234 3076 7.337480 ACAATATCTCATGCTGCATGTTAAA 57.663 32.000 34.14 21.80 41.98 1.52 R
2645 3577 0.816825 CCATCTCAGCATCCAACCCG 60.817 60.000 0.00 0.00 0.00 5.28 R
3246 4320 1.083489 TGCGCCACTGCAGTATTTAC 58.917 50.000 21.20 8.98 40.62 2.01 R
3948 5033 2.537633 ACCCATGCAACTGGAATCAT 57.462 45.000 7.97 0.00 38.69 2.45 R
4694 5827 0.768221 TCTGCATGATACCCCCTCCC 60.768 60.000 0.00 0.00 0.00 4.30 R
6274 7492 0.753867 TGACGGCAGTAGGTTTGACA 59.246 50.000 0.00 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.105473 AGGAGCCAGAAACATCATTGAAATG 60.105 40.000 0.00 0.00 37.75 2.32
28 29 6.105397 AGCCAGAAACATCATTGAAATGTT 57.895 33.333 3.10 0.76 46.53 2.71
62 63 1.111116 TCGAACCCGACTTGTCTGGT 61.111 55.000 10.40 10.40 40.30 4.00
89 90 5.657302 ACAAGACTATGTCCCTACCACTAAG 59.343 44.000 0.00 0.00 32.18 2.18
100 101 4.406003 CCCTACCACTAAGCTACATTCAGT 59.594 45.833 0.00 0.00 0.00 3.41
102 103 5.812642 CCTACCACTAAGCTACATTCAGTTG 59.187 44.000 0.00 0.00 0.00 3.16
128 129 3.118665 AGGCCCAATTAAATCACACATGC 60.119 43.478 0.00 0.00 0.00 4.06
143 144 3.201290 CACATGCAAGAGGGAGTACATC 58.799 50.000 0.00 0.00 0.00 3.06
193 194 7.980742 AAAACCTTGTTAAACAATCGAAGAC 57.019 32.000 0.00 0.00 42.51 3.01
197 198 2.156117 TGTTAAACAATCGAAGACCGCG 59.844 45.455 0.00 0.00 42.51 6.46
218 219 0.108756 AGCCTCGACCGTTTTAGAGC 60.109 55.000 0.00 0.00 0.00 4.09
225 226 2.482721 CGACCGTTTTAGAGCATGGTTT 59.517 45.455 0.00 0.00 32.02 3.27
229 230 6.036300 CGACCGTTTTAGAGCATGGTTTATAA 59.964 38.462 0.00 0.00 32.02 0.98
243 244 7.917505 GCATGGTTTATAATATAGCCAGCAATC 59.082 37.037 10.03 0.00 0.00 2.67
246 247 7.121168 TGGTTTATAATATAGCCAGCAATCAGC 59.879 37.037 0.00 0.00 46.19 4.26
262 264 7.615582 GCAATCAGCTATAATAGTTGCCATA 57.384 36.000 0.00 0.00 41.15 2.74
334 340 2.835156 TGACGGACCCATCTTACAATCA 59.165 45.455 0.00 0.00 0.00 2.57
337 343 3.199946 ACGGACCCATCTTACAATCACAT 59.800 43.478 0.00 0.00 0.00 3.21
366 373 0.178973 TGGGCCTCGTGCTATAGCTA 60.179 55.000 24.61 9.27 42.66 3.32
400 407 5.409826 CCACAACTCGCTTTTATTCTCTCTT 59.590 40.000 0.00 0.00 0.00 2.85
408 415 6.929049 TCGCTTTTATTCTCTCTTCTTCAACA 59.071 34.615 0.00 0.00 0.00 3.33
411 418 9.392021 GCTTTTATTCTCTCTTCTTCAACAAAG 57.608 33.333 0.00 0.00 36.22 2.77
417 424 6.115446 TCTCTCTTCTTCAACAAAGCAAAGA 58.885 36.000 0.00 0.00 34.76 2.52
429 436 9.944376 TCAACAAAGCAAAGATATAGAAGTAGT 57.056 29.630 0.00 0.00 0.00 2.73
465 472 8.542497 TTTTGCTTACGTGATCTTATTGTACT 57.458 30.769 0.00 0.00 0.00 2.73
470 800 7.515371 GCTTACGTGATCTTATTGTACTTGCTC 60.515 40.741 0.00 0.00 0.00 4.26
528 858 0.250727 AAAAAGTCCAGCTGCCGCTA 60.251 50.000 8.66 0.00 46.99 4.26
642 982 0.745845 AGCATGAACCCAGCACGATC 60.746 55.000 0.00 0.00 0.00 3.69
753 1102 5.477291 TGAATCTACAAATACCGGGCAAAAA 59.523 36.000 6.32 0.00 0.00 1.94
796 1178 2.149578 CAGAAGTGGCTTTGACCTGAG 58.850 52.381 0.00 0.00 0.00 3.35
876 1260 2.289257 GGCTTACACACCGACCTTAAGT 60.289 50.000 0.97 0.00 0.00 2.24
920 1307 2.019951 CCGTCGTCAAGTTCACCCG 61.020 63.158 0.00 0.00 0.00 5.28
947 1340 0.552367 ACCATCCCATCCCACCAGAA 60.552 55.000 0.00 0.00 0.00 3.02
970 1363 1.872653 CGCTAAACCCTATTCCCGCTC 60.873 57.143 0.00 0.00 0.00 5.03
972 1365 1.766496 CTAAACCCTATTCCCGCTCCA 59.234 52.381 0.00 0.00 0.00 3.86
1101 1506 2.815647 CTGAAGAAGGACGCCCGC 60.816 66.667 0.00 0.00 37.58 6.13
1557 1985 1.257539 GTCGTTTCTCGTCATCGGTC 58.742 55.000 0.00 0.00 40.80 4.79
1652 2089 5.237127 CCTAATTCAGAATATCAAGCGCACA 59.763 40.000 11.47 0.00 0.00 4.57
1706 2160 7.281040 AGATGATCAATTGTTTGTGTGTTCT 57.719 32.000 5.13 0.00 34.32 3.01
2116 2939 3.956199 AGGCATGCTGCTGTAACAAATAT 59.044 39.130 18.92 0.00 44.28 1.28
2117 2940 5.132502 AGGCATGCTGCTGTAACAAATATA 58.867 37.500 18.92 0.00 44.28 0.86
2164 2990 6.743627 ACCACGTGCGTTGTTATTATTAAATG 59.256 34.615 10.91 0.00 0.00 2.32
2170 3008 6.962116 TGCGTTGTTATTATTAAATGGTCACG 59.038 34.615 0.00 0.00 0.00 4.35
2540 3470 4.220382 TGTTTAGCACAATCTCCCCAATTG 59.780 41.667 0.00 0.00 39.50 2.32
2645 3577 4.871993 CAGGCATCTGTGTGAGTTTATC 57.128 45.455 0.00 0.00 36.30 1.75
2718 3653 8.462811 GGAAGATTTGGAGGAAATAAGTCTTTC 58.537 37.037 0.00 0.00 34.18 2.62
2801 3738 9.797642 TGTGATATCATAGATGGCTTATTTGTT 57.202 29.630 9.02 0.00 0.00 2.83
2913 3850 8.691661 ACATTACTCCTTATTGTCTTGTGTTT 57.308 30.769 0.00 0.00 0.00 2.83
2998 3937 4.642429 AGAAAACCTTGAAGCTGACGTAT 58.358 39.130 0.00 0.00 0.00 3.06
3118 4067 5.482006 TCTCACAGTGTGATTGATGTTAGG 58.518 41.667 25.65 10.48 41.94 2.69
3132 4081 9.301897 GATTGATGTTAGGAATTTAATAGCCCT 57.698 33.333 0.00 0.00 0.00 5.19
3234 4183 9.959749 TTTGAAGTGGTTATATGTTCTTCAAAC 57.040 29.630 19.69 0.00 46.78 2.93
3299 4373 9.499479 TGAATTGGTGTTGTTATATTTTGCATT 57.501 25.926 0.00 0.00 0.00 3.56
3341 4415 7.642194 TGAAGTGTGTATCGACATTTTGTTTTC 59.358 33.333 0.00 0.00 38.04 2.29
3441 4515 2.416747 TGGCAGTCTTTTCTGACATCG 58.583 47.619 0.00 0.00 46.88 3.84
3443 4517 2.072298 GCAGTCTTTTCTGACATCGCT 58.928 47.619 0.00 0.00 39.27 4.93
3456 4530 4.002982 TGACATCGCTAGCAGAATTGTTT 58.997 39.130 16.45 0.00 0.00 2.83
3528 4602 6.494893 TGACATTTTGAAACGAGGGATTAG 57.505 37.500 0.00 0.00 0.00 1.73
3557 4631 0.811281 GAAATCAGGCCGGGTGAAAG 59.189 55.000 2.18 0.00 0.00 2.62
3720 4795 7.201767 GGCTTGTTAAGGAGAAGTACGTAGATA 60.202 40.741 0.00 0.00 31.52 1.98
4139 5225 6.311735 TGTAAGGAATTAAAGTTGCTTCCCT 58.688 36.000 0.00 0.00 39.86 4.20
4141 5227 6.747414 AAGGAATTAAAGTTGCTTCCCTTT 57.253 33.333 7.42 0.00 35.20 3.11
4142 5228 6.346477 AGGAATTAAAGTTGCTTCCCTTTC 57.654 37.500 7.42 0.00 38.32 2.62
4143 5229 6.077993 AGGAATTAAAGTTGCTTCCCTTTCT 58.922 36.000 7.42 0.00 38.32 2.52
4357 5444 9.938280 AAAAAGGAGCATTAATTAAGTTTACCC 57.062 29.630 3.94 1.09 0.00 3.69
4402 5489 4.680440 GCGGCATCATTTTTCCTAATTGGT 60.680 41.667 0.00 0.00 37.07 3.67
4444 5531 0.035343 GCTACCCCAGTTCCTGAACC 60.035 60.000 6.41 0.00 42.06 3.62
4466 5553 4.121317 CTGTGCTTTCTGGAATTTTGCAA 58.879 39.130 0.00 0.00 0.00 4.08
4467 5554 4.511527 TGTGCTTTCTGGAATTTTGCAAA 58.488 34.783 8.05 8.05 0.00 3.68
4507 5594 4.351874 AGGAATGACCATATTACCCACG 57.648 45.455 0.00 0.00 42.04 4.94
4555 5687 2.529632 TGATGTGTGCCACTCTAGTCT 58.470 47.619 0.00 0.00 35.11 3.24
4567 5699 6.210784 TGCCACTCTAGTCTGTAACTACATTT 59.789 38.462 0.00 0.00 39.55 2.32
4600 5732 8.698973 TGAGAATTAACCAAACAGGATACAAA 57.301 30.769 0.00 0.00 41.22 2.83
4640 5773 7.436673 TGTTTCAAAGTTTATCAAAATCGTGGG 59.563 33.333 0.00 0.00 0.00 4.61
4684 5817 7.725397 TGGAAGTTGAAAGCTATAATGGCATAT 59.275 33.333 0.00 0.00 0.00 1.78
4694 5827 7.370383 AGCTATAATGGCATATTTTGGAAACG 58.630 34.615 0.00 0.00 0.00 3.60
4705 5838 0.550638 TTGGAAACGGGAGGGGGTAT 60.551 55.000 0.00 0.00 0.00 2.73
4714 5847 0.398318 GGAGGGGGTATCATGCAGAC 59.602 60.000 0.00 0.00 0.00 3.51
4732 5865 4.214971 GCAGACATATGGCAGAACTATTGG 59.785 45.833 12.11 0.00 0.00 3.16
4780 5913 2.564771 TCTGCCTGACACTGTTTCTTG 58.435 47.619 0.00 0.00 0.00 3.02
4864 5997 2.099141 TCCAGTCGGATGCAGAAAAG 57.901 50.000 0.00 0.00 35.91 2.27
5048 6184 5.596361 TCAACCTTTTCATGAACCTTGCTTA 59.404 36.000 7.89 0.00 0.00 3.09
5071 6208 2.442126 AGCATGATGATGTCCAGATGGT 59.558 45.455 0.00 0.00 36.34 3.55
5284 6421 5.010719 CCTGACAAGTTTGTAGTCTAGGACA 59.989 44.000 0.00 0.00 42.43 4.02
5285 6422 6.295349 CCTGACAAGTTTGTAGTCTAGGACAT 60.295 42.308 0.00 0.00 42.43 3.06
5327 6464 7.398024 ACTGGTATATTGAAGCAAAGTTCTCT 58.602 34.615 0.00 0.00 0.00 3.10
5328 6465 7.335422 ACTGGTATATTGAAGCAAAGTTCTCTG 59.665 37.037 0.00 0.00 0.00 3.35
5406 6544 9.136323 GTTTCCTAGGTCCATCAATAATTCAAT 57.864 33.333 9.08 0.00 0.00 2.57
5485 6627 7.931275 AGACCTTAAACAAACACATTCTCTTC 58.069 34.615 0.00 0.00 0.00 2.87
5520 6662 6.643845 CATATGAAACTGTCTGCTATGTTCG 58.356 40.000 0.00 0.00 0.00 3.95
5522 6664 1.726853 AACTGTCTGCTATGTTCGGC 58.273 50.000 0.00 0.00 0.00 5.54
5913 7113 3.580458 AGAGAGTGGTTATGCTGTTCTGT 59.420 43.478 0.00 0.00 0.00 3.41
6101 7304 6.017026 TGTTCATTACGTTTGAGTTTATGGCA 60.017 34.615 0.00 0.00 0.00 4.92
6233 7436 1.235724 GGTCTGCTAGCCGTGTTTTT 58.764 50.000 13.29 0.00 0.00 1.94
6234 7437 1.069227 GGTCTGCTAGCCGTGTTTTTG 60.069 52.381 13.29 0.00 0.00 2.44
6235 7438 0.591170 TCTGCTAGCCGTGTTTTTGC 59.409 50.000 13.29 0.00 0.00 3.68
6236 7439 0.725784 CTGCTAGCCGTGTTTTTGCG 60.726 55.000 13.29 0.00 0.00 4.85
6237 7440 2.080636 GCTAGCCGTGTTTTTGCGC 61.081 57.895 2.29 0.00 0.00 6.09
6238 7441 1.792057 CTAGCCGTGTTTTTGCGCG 60.792 57.895 0.00 0.00 41.44 6.86
6239 7442 3.865502 TAGCCGTGTTTTTGCGCGC 62.866 57.895 27.26 27.26 40.57 6.86
6241 7444 3.385999 CCGTGTTTTTGCGCGCTG 61.386 61.111 33.29 10.92 40.57 5.18
6242 7445 2.351774 CGTGTTTTTGCGCGCTGA 60.352 55.556 33.29 18.28 35.59 4.26
6243 7446 1.725625 CGTGTTTTTGCGCGCTGAT 60.726 52.632 33.29 0.00 35.59 2.90
6244 7447 0.451957 CGTGTTTTTGCGCGCTGATA 60.452 50.000 33.29 9.09 35.59 2.15
6245 7448 0.974836 GTGTTTTTGCGCGCTGATAC 59.025 50.000 33.29 23.01 0.00 2.24
6272 7490 6.599437 CCGTCATTTTCGTTATTTGTCTCTT 58.401 36.000 0.00 0.00 0.00 2.85
6273 7491 7.622672 GCCGTCATTTTCGTTATTTGTCTCTTA 60.623 37.037 0.00 0.00 0.00 2.10
6274 7492 8.388103 CCGTCATTTTCGTTATTTGTCTCTTAT 58.612 33.333 0.00 0.00 0.00 1.73
6275 7493 9.199184 CGTCATTTTCGTTATTTGTCTCTTATG 57.801 33.333 0.00 0.00 0.00 1.90
6281 7499 9.872757 TTTCGTTATTTGTCTCTTATGTCAAAC 57.127 29.630 0.00 0.00 33.63 2.93
6282 7500 8.025243 TCGTTATTTGTCTCTTATGTCAAACC 57.975 34.615 0.00 0.00 33.63 3.27
6283 7501 7.876068 TCGTTATTTGTCTCTTATGTCAAACCT 59.124 33.333 0.00 0.00 33.63 3.50
6284 7502 9.146984 CGTTATTTGTCTCTTATGTCAAACCTA 57.853 33.333 0.00 0.00 33.63 3.08
6287 7505 7.962964 TTTGTCTCTTATGTCAAACCTACTG 57.037 36.000 0.00 0.00 0.00 2.74
6288 7506 5.479306 TGTCTCTTATGTCAAACCTACTGC 58.521 41.667 0.00 0.00 0.00 4.40
6289 7507 4.870991 GTCTCTTATGTCAAACCTACTGCC 59.129 45.833 0.00 0.00 0.00 4.85
6290 7508 3.857052 TCTTATGTCAAACCTACTGCCG 58.143 45.455 0.00 0.00 0.00 5.69
6291 7509 3.259876 TCTTATGTCAAACCTACTGCCGT 59.740 43.478 0.00 0.00 0.00 5.68
6292 7510 2.094762 ATGTCAAACCTACTGCCGTC 57.905 50.000 0.00 0.00 0.00 4.79
6293 7511 0.753867 TGTCAAACCTACTGCCGTCA 59.246 50.000 0.00 0.00 0.00 4.35
6294 7512 1.346395 TGTCAAACCTACTGCCGTCAT 59.654 47.619 0.00 0.00 0.00 3.06
6295 7513 2.224426 TGTCAAACCTACTGCCGTCATT 60.224 45.455 0.00 0.00 0.00 2.57
6296 7514 2.812011 GTCAAACCTACTGCCGTCATTT 59.188 45.455 0.00 0.00 0.00 2.32
6297 7515 3.252458 GTCAAACCTACTGCCGTCATTTT 59.748 43.478 0.00 0.00 0.00 1.82
6298 7516 3.886505 TCAAACCTACTGCCGTCATTTTT 59.113 39.130 0.00 0.00 0.00 1.94
6299 7517 3.915437 AACCTACTGCCGTCATTTTTG 57.085 42.857 0.00 0.00 0.00 2.44
6300 7518 2.858745 ACCTACTGCCGTCATTTTTGT 58.141 42.857 0.00 0.00 0.00 2.83
6301 7519 3.219281 ACCTACTGCCGTCATTTTTGTT 58.781 40.909 0.00 0.00 0.00 2.83
6302 7520 4.391155 ACCTACTGCCGTCATTTTTGTTA 58.609 39.130 0.00 0.00 0.00 2.41
6303 7521 5.007682 ACCTACTGCCGTCATTTTTGTTAT 58.992 37.500 0.00 0.00 0.00 1.89
6304 7522 5.475564 ACCTACTGCCGTCATTTTTGTTATT 59.524 36.000 0.00 0.00 0.00 1.40
6305 7523 6.015772 ACCTACTGCCGTCATTTTTGTTATTT 60.016 34.615 0.00 0.00 0.00 1.40
6306 7524 6.307800 CCTACTGCCGTCATTTTTGTTATTTG 59.692 38.462 0.00 0.00 0.00 2.32
6307 7525 5.596845 ACTGCCGTCATTTTTGTTATTTGT 58.403 33.333 0.00 0.00 0.00 2.83
6308 7526 5.689961 ACTGCCGTCATTTTTGTTATTTGTC 59.310 36.000 0.00 0.00 0.00 3.18
6309 7527 5.837437 TGCCGTCATTTTTGTTATTTGTCT 58.163 33.333 0.00 0.00 0.00 3.41
6310 7528 5.918011 TGCCGTCATTTTTGTTATTTGTCTC 59.082 36.000 0.00 0.00 0.00 3.36
6311 7529 6.149633 GCCGTCATTTTTGTTATTTGTCTCT 58.850 36.000 0.00 0.00 0.00 3.10
6312 7530 6.640907 GCCGTCATTTTTGTTATTTGTCTCTT 59.359 34.615 0.00 0.00 0.00 2.85
6313 7531 7.806014 GCCGTCATTTTTGTTATTTGTCTCTTA 59.194 33.333 0.00 0.00 0.00 2.10
6314 7532 9.840427 CCGTCATTTTTGTTATTTGTCTCTTAT 57.160 29.630 0.00 0.00 0.00 1.73
6334 7552 2.265367 TGTCAAACCTAGGGATGCAGA 58.735 47.619 14.81 0.00 0.00 4.26
6361 7579 2.109799 CCGCATCCATCCGAAGCT 59.890 61.111 0.00 0.00 32.91 3.74
6362 7580 1.112916 TCCGCATCCATCCGAAGCTA 61.113 55.000 0.00 0.00 32.91 3.32
6363 7581 0.249868 CCGCATCCATCCGAAGCTAA 60.250 55.000 0.00 0.00 32.91 3.09
6364 7582 1.143305 CGCATCCATCCGAAGCTAAG 58.857 55.000 0.00 0.00 32.91 2.18
6365 7583 1.517242 GCATCCATCCGAAGCTAAGG 58.483 55.000 1.17 1.17 32.34 2.69
6366 7584 1.517242 CATCCATCCGAAGCTAAGGC 58.483 55.000 2.69 0.00 39.06 4.35
6367 7585 0.398318 ATCCATCCGAAGCTAAGGCC 59.602 55.000 0.00 0.00 39.73 5.19
6368 7586 0.691078 TCCATCCGAAGCTAAGGCCT 60.691 55.000 0.00 0.00 39.73 5.19
6369 7587 0.250081 CCATCCGAAGCTAAGGCCTC 60.250 60.000 5.23 0.00 39.73 4.70
6370 7588 0.250081 CATCCGAAGCTAAGGCCTCC 60.250 60.000 5.23 0.00 39.73 4.30
6371 7589 0.399233 ATCCGAAGCTAAGGCCTCCT 60.399 55.000 5.23 0.00 39.73 3.69
6372 7590 0.617820 TCCGAAGCTAAGGCCTCCTT 60.618 55.000 5.23 9.52 46.63 3.36
6373 7591 0.253327 CCGAAGCTAAGGCCTCCTTT 59.747 55.000 5.23 0.00 41.69 3.11
6374 7592 1.373570 CGAAGCTAAGGCCTCCTTTG 58.626 55.000 5.23 9.55 41.69 2.77
6375 7593 1.756430 GAAGCTAAGGCCTCCTTTGG 58.244 55.000 5.23 0.00 41.69 3.28
6376 7594 1.004862 GAAGCTAAGGCCTCCTTTGGT 59.995 52.381 5.23 4.81 45.57 3.67
6377 7595 1.076438 AGCTAAGGCCTCCTTTGGTT 58.924 50.000 5.23 0.00 42.36 3.67
6378 7596 1.429299 AGCTAAGGCCTCCTTTGGTTT 59.571 47.619 5.23 0.00 42.36 3.27
6379 7597 2.647802 AGCTAAGGCCTCCTTTGGTTTA 59.352 45.455 5.23 0.00 42.36 2.01
6380 7598 3.269643 AGCTAAGGCCTCCTTTGGTTTAT 59.730 43.478 5.23 0.00 42.36 1.40
6381 7599 4.477213 AGCTAAGGCCTCCTTTGGTTTATA 59.523 41.667 5.23 0.00 42.36 0.98
6382 7600 4.822350 GCTAAGGCCTCCTTTGGTTTATAG 59.178 45.833 5.23 0.00 41.69 1.31
6383 7601 3.953542 AGGCCTCCTTTGGTTTATAGG 57.046 47.619 0.00 0.00 0.00 2.57
6384 7602 3.470868 AGGCCTCCTTTGGTTTATAGGA 58.529 45.455 0.00 0.00 36.65 2.94
6385 7603 3.856206 AGGCCTCCTTTGGTTTATAGGAA 59.144 43.478 0.00 0.00 37.61 3.36
6386 7604 4.482398 AGGCCTCCTTTGGTTTATAGGAAT 59.518 41.667 0.00 0.00 37.61 3.01
6387 7605 4.827835 GGCCTCCTTTGGTTTATAGGAATC 59.172 45.833 0.00 0.00 37.61 2.52
6388 7606 5.399152 GGCCTCCTTTGGTTTATAGGAATCT 60.399 44.000 0.00 0.00 37.61 2.40
6389 7607 6.129874 GCCTCCTTTGGTTTATAGGAATCTT 58.870 40.000 0.00 0.00 37.61 2.40
6390 7608 6.039829 GCCTCCTTTGGTTTATAGGAATCTTG 59.960 42.308 0.00 0.00 37.61 3.02
6391 7609 7.119387 CCTCCTTTGGTTTATAGGAATCTTGT 58.881 38.462 0.00 0.00 37.61 3.16
6392 7610 8.272173 CCTCCTTTGGTTTATAGGAATCTTGTA 58.728 37.037 0.00 0.00 37.61 2.41
6393 7611 9.331282 CTCCTTTGGTTTATAGGAATCTTGTAG 57.669 37.037 0.00 0.00 37.61 2.74
6394 7612 8.272173 TCCTTTGGTTTATAGGAATCTTGTAGG 58.728 37.037 0.00 0.00 35.20 3.18
6395 7613 8.272173 CCTTTGGTTTATAGGAATCTTGTAGGA 58.728 37.037 0.00 0.00 0.00 2.94
6396 7614 9.681062 CTTTGGTTTATAGGAATCTTGTAGGAA 57.319 33.333 0.00 0.00 0.00 3.36
6406 7624 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
6407 7625 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
6411 7629 9.621239 ATCTTGTAGGAATTTCATAGGATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
6412 7630 9.621239 TCTTGTAGGAATTTCATAGGATAGGAT 57.379 33.333 0.00 0.00 28.27 3.24
6451 7669 8.472007 TTTTTAGAGCCTTTTGATTTGTAGGA 57.528 30.769 0.00 0.00 0.00 2.94
6452 7670 8.472007 TTTTAGAGCCTTTTGATTTGTAGGAA 57.528 30.769 0.00 0.00 0.00 3.36
6453 7671 8.650143 TTTAGAGCCTTTTGATTTGTAGGAAT 57.350 30.769 0.00 0.00 0.00 3.01
6454 7672 6.521151 AGAGCCTTTTGATTTGTAGGAATG 57.479 37.500 0.00 0.00 0.00 2.67
6455 7673 5.420104 AGAGCCTTTTGATTTGTAGGAATGG 59.580 40.000 0.00 0.00 0.00 3.16
6456 7674 5.332743 AGCCTTTTGATTTGTAGGAATGGA 58.667 37.500 0.00 0.00 0.00 3.41
6457 7675 5.779771 AGCCTTTTGATTTGTAGGAATGGAA 59.220 36.000 0.00 0.00 0.00 3.53
6458 7676 6.441604 AGCCTTTTGATTTGTAGGAATGGAAT 59.558 34.615 0.00 0.00 0.00 3.01
6459 7677 6.758416 GCCTTTTGATTTGTAGGAATGGAATC 59.242 38.462 0.00 0.00 0.00 2.52
6460 7678 7.267857 CCTTTTGATTTGTAGGAATGGAATCC 58.732 38.462 0.00 0.00 39.96 3.01
6472 7690 5.320277 GGAATGGAATCCTATTCCTGAAGG 58.680 45.833 23.95 0.00 45.66 3.46
6473 7691 5.073691 GGAATGGAATCCTATTCCTGAAGGA 59.926 44.000 23.95 0.17 45.66 3.36
6474 7692 6.410853 GGAATGGAATCCTATTCCTGAAGGAA 60.411 42.308 23.95 14.03 45.66 3.36
6532 7750 8.918202 AAACATTAGTCTAGACACAATGGAAA 57.082 30.769 32.24 15.26 38.86 3.13
6533 7751 8.918202 AACATTAGTCTAGACACAATGGAAAA 57.082 30.769 32.24 14.54 38.86 2.29
6534 7752 9.520515 AACATTAGTCTAGACACAATGGAAAAT 57.479 29.630 32.24 19.76 38.86 1.82
6535 7753 9.520515 ACATTAGTCTAGACACAATGGAAAATT 57.479 29.630 32.24 19.31 38.86 1.82
6547 7765 9.775854 ACACAATGGAAAATTTTTATGATGTGA 57.224 25.926 26.57 3.28 37.35 3.58
6557 7775 8.496707 AATTTTTATGATGTGAATCAAAGGGC 57.503 30.769 0.00 0.00 33.83 5.19
6558 7776 6.602410 TTTTATGATGTGAATCAAAGGGCA 57.398 33.333 0.00 0.00 33.83 5.36
6559 7777 6.795144 TTTATGATGTGAATCAAAGGGCAT 57.205 33.333 0.00 0.00 33.83 4.40
6560 7778 4.931661 ATGATGTGAATCAAAGGGCATC 57.068 40.909 4.45 4.45 33.83 3.91
6561 7779 3.972133 TGATGTGAATCAAAGGGCATCT 58.028 40.909 10.68 0.00 35.22 2.90
6562 7780 3.949754 TGATGTGAATCAAAGGGCATCTC 59.050 43.478 10.68 0.00 35.22 2.75
6563 7781 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
6564 7782 2.309755 TGTGAATCAAAGGGCATCTCCT 59.690 45.455 0.00 0.00 39.17 3.69
6573 7791 4.445557 AAGGGCATCTCCTTTCCTATTC 57.554 45.455 0.00 0.00 44.14 1.75
6574 7792 2.713708 AGGGCATCTCCTTTCCTATTCC 59.286 50.000 0.00 0.00 32.13 3.01
6575 7793 2.713708 GGGCATCTCCTTTCCTATTCCT 59.286 50.000 0.00 0.00 34.39 3.36
6576 7794 3.910627 GGGCATCTCCTTTCCTATTCCTA 59.089 47.826 0.00 0.00 34.39 2.94
6577 7795 4.263112 GGGCATCTCCTTTCCTATTCCTAC 60.263 50.000 0.00 0.00 34.39 3.18
6578 7796 4.595350 GGCATCTCCTTTCCTATTCCTACT 59.405 45.833 0.00 0.00 0.00 2.57
6579 7797 5.279758 GGCATCTCCTTTCCTATTCCTACTC 60.280 48.000 0.00 0.00 0.00 2.59
6580 7798 5.305644 GCATCTCCTTTCCTATTCCTACTCA 59.694 44.000 0.00 0.00 0.00 3.41
6581 7799 6.013812 GCATCTCCTTTCCTATTCCTACTCAT 60.014 42.308 0.00 0.00 0.00 2.90
6582 7800 7.179338 GCATCTCCTTTCCTATTCCTACTCATA 59.821 40.741 0.00 0.00 0.00 2.15
6583 7801 8.748412 CATCTCCTTTCCTATTCCTACTCATAG 58.252 40.741 0.00 0.00 0.00 2.23
6615 7833 9.941325 GAGATACATGTCATCTCATTTCCTATT 57.059 33.333 24.95 4.17 45.17 1.73
6616 7834 9.941325 AGATACATGTCATCTCATTTCCTATTC 57.059 33.333 0.00 0.00 0.00 1.75
6617 7835 9.160496 GATACATGTCATCTCATTTCCTATTCC 57.840 37.037 0.00 0.00 0.00 3.01
6618 7836 7.146715 ACATGTCATCTCATTTCCTATTCCT 57.853 36.000 0.00 0.00 0.00 3.36
6619 7837 8.267620 ACATGTCATCTCATTTCCTATTCCTA 57.732 34.615 0.00 0.00 0.00 2.94
6620 7838 8.153550 ACATGTCATCTCATTTCCTATTCCTAC 58.846 37.037 0.00 0.00 0.00 3.18
6621 7839 7.067496 TGTCATCTCATTTCCTATTCCTACC 57.933 40.000 0.00 0.00 0.00 3.18
6622 7840 6.615316 TGTCATCTCATTTCCTATTCCTACCA 59.385 38.462 0.00 0.00 0.00 3.25
6623 7841 7.293299 TGTCATCTCATTTCCTATTCCTACCAT 59.707 37.037 0.00 0.00 0.00 3.55
6624 7842 8.160106 GTCATCTCATTTCCTATTCCTACCATT 58.840 37.037 0.00 0.00 0.00 3.16
6625 7843 8.727149 TCATCTCATTTCCTATTCCTACCATTT 58.273 33.333 0.00 0.00 0.00 2.32
6626 7844 9.359653 CATCTCATTTCCTATTCCTACCATTTT 57.640 33.333 0.00 0.00 0.00 1.82
6627 7845 8.980481 TCTCATTTCCTATTCCTACCATTTTC 57.020 34.615 0.00 0.00 0.00 2.29
6628 7846 7.998964 TCTCATTTCCTATTCCTACCATTTTCC 59.001 37.037 0.00 0.00 0.00 3.13
6629 7847 7.882755 TCATTTCCTATTCCTACCATTTTCCT 58.117 34.615 0.00 0.00 0.00 3.36
6630 7848 7.779798 TCATTTCCTATTCCTACCATTTTCCTG 59.220 37.037 0.00 0.00 0.00 3.86
6631 7849 6.901615 TTCCTATTCCTACCATTTTCCTGA 57.098 37.500 0.00 0.00 0.00 3.86
6632 7850 6.901615 TCCTATTCCTACCATTTTCCTGAA 57.098 37.500 0.00 0.00 0.00 3.02
6633 7851 6.659824 TCCTATTCCTACCATTTTCCTGAAC 58.340 40.000 0.00 0.00 0.00 3.18
6634 7852 5.828328 CCTATTCCTACCATTTTCCTGAACC 59.172 44.000 0.00 0.00 0.00 3.62
6635 7853 4.733077 TTCCTACCATTTTCCTGAACCA 57.267 40.909 0.00 0.00 0.00 3.67
6636 7854 4.733077 TCCTACCATTTTCCTGAACCAA 57.267 40.909 0.00 0.00 0.00 3.67
6637 7855 5.068215 TCCTACCATTTTCCTGAACCAAA 57.932 39.130 0.00 0.00 0.00 3.28
6638 7856 5.076873 TCCTACCATTTTCCTGAACCAAAG 58.923 41.667 0.00 0.00 0.00 2.77
6639 7857 4.832823 CCTACCATTTTCCTGAACCAAAGT 59.167 41.667 0.00 0.00 0.00 2.66
6640 7858 6.007703 CCTACCATTTTCCTGAACCAAAGTA 58.992 40.000 0.00 0.00 0.00 2.24
6641 7859 6.151144 CCTACCATTTTCCTGAACCAAAGTAG 59.849 42.308 0.00 0.00 0.00 2.57
6642 7860 4.832823 ACCATTTTCCTGAACCAAAGTAGG 59.167 41.667 0.00 0.00 0.00 3.18
6643 7861 4.321974 CCATTTTCCTGAACCAAAGTAGGC 60.322 45.833 0.00 0.00 0.00 3.93
6644 7862 2.579410 TTCCTGAACCAAAGTAGGCC 57.421 50.000 0.00 0.00 0.00 5.19
6645 7863 1.742308 TCCTGAACCAAAGTAGGCCT 58.258 50.000 11.78 11.78 0.00 5.19
6703 7921 8.440833 CCCAAAACGTTTTACATTTGTTTACAA 58.559 29.630 24.79 0.00 32.84 2.41
6721 7939 9.059260 TGTTTACAAAGGGAGTATTACTTCAAC 57.941 33.333 4.52 0.00 0.00 3.18
6777 7997 3.120199 CCTAACTGCAATGTGTCCTTTCG 60.120 47.826 0.00 0.00 0.00 3.46
6806 8026 5.856126 TCCAGTTTATTTACGACAGCAAG 57.144 39.130 0.00 0.00 0.00 4.01
6844 8064 6.254589 CGTCAAGAGAGTATTGAGACAAATCC 59.745 42.308 0.00 0.00 37.35 3.01
6861 8092 7.449704 AGACAAATCCTTGATAGCTTTGAAGTT 59.550 33.333 0.00 0.00 36.33 2.66
6866 8097 4.219288 CCTTGATAGCTTTGAAGTTTGGCT 59.781 41.667 0.00 0.00 37.08 4.75
6904 8136 4.018050 AGACAAATCTTTGATAGCAGGGGT 60.018 41.667 9.53 0.00 40.55 4.95
6927 8160 6.350194 GGTTATTTTGAGTGACATTTCTCCCC 60.350 42.308 0.00 0.00 0.00 4.81
6928 8161 3.874383 TTTGAGTGACATTTCTCCCCA 57.126 42.857 0.00 0.00 0.00 4.96
6943 8176 3.662759 TCCCCATTGGAGGTTTGATAC 57.337 47.619 3.62 0.00 38.61 2.24
6944 8177 2.922955 TCCCCATTGGAGGTTTGATACA 59.077 45.455 3.62 0.00 38.61 2.29
6945 8178 3.531397 TCCCCATTGGAGGTTTGATACAT 59.469 43.478 3.62 0.00 38.61 2.29
6946 8179 4.729370 TCCCCATTGGAGGTTTGATACATA 59.271 41.667 3.62 0.00 38.61 2.29
6947 8180 5.375354 TCCCCATTGGAGGTTTGATACATAT 59.625 40.000 3.62 0.00 38.61 1.78
6948 8181 5.711976 CCCCATTGGAGGTTTGATACATATC 59.288 44.000 3.62 0.00 35.39 1.63
6949 8182 6.306199 CCCATTGGAGGTTTGATACATATCA 58.694 40.000 3.62 0.00 40.69 2.15
6950 8183 6.207417 CCCATTGGAGGTTTGATACATATCAC 59.793 42.308 3.62 0.00 42.00 3.06
6951 8184 6.772233 CCATTGGAGGTTTGATACATATCACA 59.228 38.462 0.00 0.00 42.00 3.58
6952 8185 7.255242 CCATTGGAGGTTTGATACATATCACAC 60.255 40.741 8.93 8.93 42.00 3.82
6953 8186 6.306643 TGGAGGTTTGATACATATCACACA 57.693 37.500 16.24 2.98 42.32 3.72
6954 8187 6.112734 TGGAGGTTTGATACATATCACACAC 58.887 40.000 16.24 10.89 42.32 3.82
6955 8188 6.112734 GGAGGTTTGATACATATCACACACA 58.887 40.000 16.24 0.00 42.32 3.72
6956 8189 6.767902 GGAGGTTTGATACATATCACACACAT 59.232 38.462 16.24 6.33 42.32 3.21
6957 8190 7.283127 GGAGGTTTGATACATATCACACACATT 59.717 37.037 16.24 3.42 42.32 2.71
6958 8191 8.579850 AGGTTTGATACATATCACACACATTT 57.420 30.769 16.24 0.00 42.32 2.32
6959 8192 8.677300 AGGTTTGATACATATCACACACATTTC 58.323 33.333 16.24 2.75 42.32 2.17
6960 8193 8.677300 GGTTTGATACATATCACACACATTTCT 58.323 33.333 16.24 0.00 42.32 2.52
6961 8194 9.494479 GTTTGATACATATCACACACATTTCTG 57.506 33.333 11.56 0.00 42.00 3.02
6962 8195 7.790823 TGATACATATCACACACATTTCTGG 57.209 36.000 0.00 0.00 37.76 3.86
6963 8196 7.337938 TGATACATATCACACACATTTCTGGT 58.662 34.615 0.00 0.00 37.76 4.00
6964 8197 7.828717 TGATACATATCACACACATTTCTGGTT 59.171 33.333 0.00 0.00 37.76 3.67
6965 8198 6.500684 ACATATCACACACATTTCTGGTTC 57.499 37.500 0.00 0.00 0.00 3.62
6966 8199 6.003326 ACATATCACACACATTTCTGGTTCA 58.997 36.000 0.00 0.00 0.00 3.18
6967 8200 6.489700 ACATATCACACACATTTCTGGTTCAA 59.510 34.615 0.00 0.00 0.00 2.69
6968 8201 5.850557 ATCACACACATTTCTGGTTCAAA 57.149 34.783 0.00 0.00 0.00 2.69
6969 8202 5.247507 TCACACACATTTCTGGTTCAAAG 57.752 39.130 0.00 0.00 0.00 2.77
6970 8203 3.798337 CACACACATTTCTGGTTCAAAGC 59.202 43.478 0.00 0.00 0.00 3.51
6971 8204 3.044986 CACACATTTCTGGTTCAAAGCG 58.955 45.455 0.00 0.00 0.00 4.68
6972 8205 2.034558 ACACATTTCTGGTTCAAAGCGG 59.965 45.455 0.00 0.00 0.00 5.52
6973 8206 2.034558 CACATTTCTGGTTCAAAGCGGT 59.965 45.455 1.09 0.00 34.50 5.68
6974 8207 2.293399 ACATTTCTGGTTCAAAGCGGTC 59.707 45.455 0.00 0.00 34.50 4.79
6975 8208 2.341846 TTTCTGGTTCAAAGCGGTCT 57.658 45.000 0.00 0.00 34.50 3.85
6976 8209 3.478857 TTTCTGGTTCAAAGCGGTCTA 57.521 42.857 0.00 0.00 34.50 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.733620 ACATTTCAATGATGTTTCTGGCT 57.266 34.783 6.53 0.00 39.67 4.75
6 7 5.927689 TGAACATTTCAATGATGTTTCTGGC 59.072 36.000 6.53 0.00 45.11 4.85
7 8 7.949903 TTGAACATTTCAATGATGTTTCTGG 57.050 32.000 6.53 0.00 45.11 3.86
16 17 8.431815 CCCATGGGGTTTGAACATTTCAATGA 62.432 42.308 24.53 0.00 40.73 2.57
26 27 1.102978 CGATCCCATGGGGTTTGAAC 58.897 55.000 30.93 10.39 44.74 3.18
28 29 0.995803 TTCGATCCCATGGGGTTTGA 59.004 50.000 30.93 21.88 44.74 2.69
48 49 5.114736 TCTTGTGTACCAGACAAGTCGGG 62.115 52.174 18.74 16.25 46.94 5.14
51 52 4.323553 AGTCTTGTGTACCAGACAAGTC 57.676 45.455 18.74 15.00 46.94 3.01
62 63 4.708421 GTGGTAGGGACATAGTCTTGTGTA 59.292 45.833 0.00 0.00 32.47 2.90
89 90 3.198872 GGCCTAGACAACTGAATGTAGC 58.801 50.000 0.00 0.00 32.57 3.58
100 101 5.417580 GTGTGATTTAATTGGGCCTAGACAA 59.582 40.000 4.53 0.00 0.00 3.18
102 103 4.947388 TGTGTGATTTAATTGGGCCTAGAC 59.053 41.667 4.53 0.00 0.00 2.59
128 129 6.284459 GTTTGATAGGATGTACTCCCTCTTG 58.716 44.000 9.41 0.00 46.27 3.02
143 144 3.098555 GCGGGTGCGTTTGATAGG 58.901 61.111 0.00 0.00 0.00 2.57
173 174 4.708601 CGGTCTTCGATTGTTTAACAAGG 58.291 43.478 15.83 10.29 41.94 3.61
187 188 2.881352 GAGGCTTCGCGGTCTTCG 60.881 66.667 6.13 0.00 42.76 3.79
197 198 2.260481 CTCTAAAACGGTCGAGGCTTC 58.740 52.381 0.00 0.00 0.00 3.86
204 205 1.722011 ACCATGCTCTAAAACGGTCG 58.278 50.000 0.00 0.00 0.00 4.79
218 219 8.959548 TGATTGCTGGCTATATTATAAACCATG 58.040 33.333 5.86 0.00 0.00 3.66
337 343 1.053424 ACGAGGCCCAAGACACTTTA 58.947 50.000 0.00 0.00 0.00 1.85
348 354 0.528470 CTAGCTATAGCACGAGGCCC 59.472 60.000 26.07 0.00 46.50 5.80
352 358 7.024768 GGAATAAGAACTAGCTATAGCACGAG 58.975 42.308 26.07 20.22 45.16 4.18
366 373 4.273148 AGCGAGTTGTGGAATAAGAACT 57.727 40.909 0.00 0.00 0.00 3.01
400 407 9.507329 ACTTCTATATCTTTGCTTTGTTGAAGA 57.493 29.630 0.00 0.00 37.57 2.87
440 447 8.542497 AGTACAATAAGATCACGTAAGCAAAA 57.458 30.769 0.00 0.00 45.62 2.44
442 449 7.412563 GCAAGTACAATAAGATCACGTAAGCAA 60.413 37.037 0.00 0.00 45.62 3.91
449 456 6.647212 TTGAGCAAGTACAATAAGATCACG 57.353 37.500 0.00 0.00 0.00 4.35
461 468 8.854614 ATTGGGATTCTATATTGAGCAAGTAC 57.145 34.615 0.00 0.00 0.00 2.73
465 472 6.851318 TGGATTGGGATTCTATATTGAGCAA 58.149 36.000 0.00 0.00 0.00 3.91
470 800 5.125097 GCAGCTGGATTGGGATTCTATATTG 59.875 44.000 17.12 0.00 0.00 1.90
477 807 1.450531 CGGCAGCTGGATTGGGATTC 61.451 60.000 17.12 0.00 0.00 2.52
478 808 1.454479 CGGCAGCTGGATTGGGATT 60.454 57.895 17.12 0.00 0.00 3.01
642 982 1.845809 GCACTTGTCTTGCTCACGGG 61.846 60.000 0.00 0.00 37.00 5.28
753 1102 3.264450 CCTGGAAATGGTAGAAGGTGTCT 59.736 47.826 0.00 0.00 40.71 3.41
796 1178 1.334689 CCGGAAAGGAACGCAAAGAAC 60.335 52.381 0.00 0.00 45.00 3.01
832 1214 3.702048 GCCCAGCCCGTCTGTGTA 61.702 66.667 1.99 0.00 41.25 2.90
876 1260 1.209504 CCTCGATGGACTGGGCTTAAA 59.790 52.381 0.00 0.00 38.35 1.52
920 1307 1.152881 GATGGGATGGTGGTGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
947 1340 1.134610 CGGGAATAGGGTTTAGCGTGT 60.135 52.381 0.00 0.00 0.00 4.49
1172 1595 2.126228 CGTAGTTGGCCGCGAAGA 60.126 61.111 8.23 0.00 0.00 2.87
1652 2089 8.922676 CACACTATAACAGAAATTGTAACGAGT 58.077 33.333 0.00 0.00 39.73 4.18
1706 2160 0.318441 CTCGACCTGCCAGTCAAAGA 59.682 55.000 4.34 0.00 36.52 2.52
2116 2939 6.042777 GTGCTAGACATAACAGAACATGCTA 58.957 40.000 0.00 0.00 0.00 3.49
2117 2940 4.872691 GTGCTAGACATAACAGAACATGCT 59.127 41.667 0.00 0.00 0.00 3.79
2164 2990 4.003648 AGATGAAAGAATGAACCGTGACC 58.996 43.478 0.00 0.00 0.00 4.02
2170 3008 9.267084 GGAGATACTAAGATGAAAGAATGAACC 57.733 37.037 0.00 0.00 0.00 3.62
2233 3075 7.948357 ACAATATCTCATGCTGCATGTTAAAT 58.052 30.769 34.14 24.92 41.98 1.40
2234 3076 7.337480 ACAATATCTCATGCTGCATGTTAAA 57.663 32.000 34.14 21.80 41.98 1.52
2381 3306 7.994911 TCTCTAAATTTCTGCATGTGTATCCAT 59.005 33.333 0.00 0.00 0.00 3.41
2645 3577 0.816825 CCATCTCAGCATCCAACCCG 60.817 60.000 0.00 0.00 0.00 5.28
2998 3937 5.191727 TCAGCATTTTAATCCCTTCCTCA 57.808 39.130 0.00 0.00 0.00 3.86
3237 4186 7.170828 CGCCACTGCAGTATTTACTATTATTCA 59.829 37.037 21.20 0.00 37.32 2.57
3246 4320 1.083489 TGCGCCACTGCAGTATTTAC 58.917 50.000 21.20 8.98 40.62 2.01
3301 4375 9.959749 GATACACACTTCAAATTGGTAGAAAAA 57.040 29.630 0.00 0.00 0.00 1.94
3341 4415 4.201910 CCGGTTGGTAGATAGCATTTGTTG 60.202 45.833 0.00 0.00 33.26 3.33
3489 4563 2.703416 TGTCAAGCACATCCACTGATC 58.297 47.619 0.00 0.00 0.00 2.92
3528 4602 3.217599 GGCCTGATTTCCGAAGAAAAC 57.782 47.619 0.00 0.00 44.91 2.43
3549 4623 2.757980 TAACCGCCAGCCTTTCACCC 62.758 60.000 0.00 0.00 0.00 4.61
3720 4795 6.916387 GTGATACAGTTACATACGTGCAGTAT 59.084 38.462 0.00 0.00 46.37 2.12
3948 5033 2.537633 ACCCATGCAACTGGAATCAT 57.462 45.000 7.97 0.00 38.69 2.45
4115 5201 6.311735 AGGGAAGCAACTTTAATTCCTTACA 58.688 36.000 3.10 0.00 40.87 2.41
4118 5204 6.554982 AGAAAGGGAAGCAACTTTAATTCCTT 59.445 34.615 3.10 0.00 40.87 3.36
4139 5225 8.851541 ACAAAGGAAACGGTAACATATAGAAA 57.148 30.769 0.00 0.00 0.00 2.52
4141 5227 8.723311 CAAACAAAGGAAACGGTAACATATAGA 58.277 33.333 0.00 0.00 0.00 1.98
4142 5228 7.483691 GCAAACAAAGGAAACGGTAACATATAG 59.516 37.037 0.00 0.00 0.00 1.31
4143 5229 7.040617 TGCAAACAAAGGAAACGGTAACATATA 60.041 33.333 0.00 0.00 0.00 0.86
4265 5352 7.044181 TGGATTTGTTTTTGTTATGCTGACAA 58.956 30.769 0.00 0.00 35.36 3.18
4357 5444 5.003778 CGCAAGAAACTCAACAGTTGAAAAG 59.996 40.000 16.85 8.27 42.45 2.27
4444 5531 3.719924 TGCAAAATTCCAGAAAGCACAG 58.280 40.909 0.00 0.00 0.00 3.66
4467 5554 5.836024 TCCTAGATGTGTACTGGGTTTTT 57.164 39.130 0.00 0.00 37.31 1.94
4476 5563 9.640963 GTAATATGGTCATTCCTAGATGTGTAC 57.359 37.037 0.00 0.00 37.07 2.90
4507 5594 6.475402 CCAACAAGAACAAGTAACCAATGAAC 59.525 38.462 0.00 0.00 0.00 3.18
4640 5773 5.068723 ACTTCCATTCCAAATGCATCTGATC 59.931 40.000 0.28 0.00 0.00 2.92
4684 5817 1.154221 CCCCCTCCCGTTTCCAAAA 59.846 57.895 0.00 0.00 0.00 2.44
4687 5820 0.984432 GATACCCCCTCCCGTTTCCA 60.984 60.000 0.00 0.00 0.00 3.53
4694 5827 0.768221 TCTGCATGATACCCCCTCCC 60.768 60.000 0.00 0.00 0.00 4.30
4705 5838 3.118149 AGTTCTGCCATATGTCTGCATGA 60.118 43.478 0.00 3.98 36.58 3.07
4714 5847 6.997655 TCTAGTCCAATAGTTCTGCCATATG 58.002 40.000 0.00 0.00 0.00 1.78
4732 5865 2.243810 CCCTGCTCTACCCATCTAGTC 58.756 57.143 0.00 0.00 0.00 2.59
4813 5946 7.437713 TCCACAATAGAACATCACTCCTATT 57.562 36.000 0.00 0.00 33.51 1.73
4864 5997 2.814280 TGTCGACCCAGAGAAACTTC 57.186 50.000 14.12 0.00 0.00 3.01
5048 6184 3.477530 CATCTGGACATCATCATGCTGT 58.522 45.455 0.00 0.00 32.57 4.40
5055 6191 4.283363 AGCATACCATCTGGACATCATC 57.717 45.455 2.55 0.00 38.94 2.92
5056 6192 4.719026 AAGCATACCATCTGGACATCAT 57.281 40.909 2.55 0.00 38.94 2.45
5057 6193 4.201657 CAAAGCATACCATCTGGACATCA 58.798 43.478 2.55 0.00 38.94 3.07
5058 6194 4.202441 ACAAAGCATACCATCTGGACATC 58.798 43.478 2.55 0.00 38.94 3.06
5059 6195 4.240881 ACAAAGCATACCATCTGGACAT 57.759 40.909 2.55 0.00 38.94 3.06
5060 6196 3.719268 ACAAAGCATACCATCTGGACA 57.281 42.857 2.55 0.00 38.94 4.02
5061 6197 5.428253 TCTTACAAAGCATACCATCTGGAC 58.572 41.667 2.55 0.00 38.94 4.02
5062 6198 5.425217 TCTCTTACAAAGCATACCATCTGGA 59.575 40.000 2.55 0.00 38.94 3.86
5063 6199 5.674525 TCTCTTACAAAGCATACCATCTGG 58.325 41.667 0.00 0.00 42.17 3.86
5071 6208 8.956426 CAAAACCCTAATCTCTTACAAAGCATA 58.044 33.333 0.00 0.00 0.00 3.14
5327 6464 4.709886 TGTTAGCTATCAGTGGAAGTAGCA 59.290 41.667 15.20 5.09 41.44 3.49
5328 6465 5.263968 TGTTAGCTATCAGTGGAAGTAGC 57.736 43.478 0.15 8.66 39.77 3.58
5421 6559 5.525012 GGGAGATTTTTGCTTCAATATTGGC 59.475 40.000 15.36 11.92 0.00 4.52
5422 6560 6.642430 TGGGAGATTTTTGCTTCAATATTGG 58.358 36.000 15.36 1.65 0.00 3.16
5423 6561 8.202137 AGATGGGAGATTTTTGCTTCAATATTG 58.798 33.333 9.29 9.29 0.00 1.90
5424 6562 8.202137 CAGATGGGAGATTTTTGCTTCAATATT 58.798 33.333 0.00 0.00 0.00 1.28
5485 6627 4.142182 ACAGTTTCATATGCAAAATCCCCG 60.142 41.667 0.00 0.00 0.00 5.73
5913 7113 0.770499 TCCTGATGTTGTTGAGGGCA 59.230 50.000 0.00 0.00 0.00 5.36
6101 7304 1.031571 CGGTGCTACACATTGGCCAT 61.032 55.000 6.09 0.00 35.86 4.40
6235 7438 3.323136 GACGGCAGTATCAGCGCG 61.323 66.667 0.00 0.00 33.79 6.86
6236 7439 1.154205 AATGACGGCAGTATCAGCGC 61.154 55.000 0.00 0.00 0.00 5.92
6237 7440 1.290203 AAATGACGGCAGTATCAGCG 58.710 50.000 0.00 0.00 0.00 5.18
6238 7441 2.285834 CGAAAATGACGGCAGTATCAGC 60.286 50.000 0.00 0.00 0.00 4.26
6239 7442 2.930040 ACGAAAATGACGGCAGTATCAG 59.070 45.455 0.00 0.00 34.93 2.90
6240 7443 2.967362 ACGAAAATGACGGCAGTATCA 58.033 42.857 0.00 0.00 34.93 2.15
6241 7444 5.652744 ATAACGAAAATGACGGCAGTATC 57.347 39.130 0.00 0.00 34.93 2.24
6242 7445 6.128117 ACAAATAACGAAAATGACGGCAGTAT 60.128 34.615 0.00 0.00 34.93 2.12
6243 7446 5.179742 ACAAATAACGAAAATGACGGCAGTA 59.820 36.000 0.00 0.00 34.93 2.74
6244 7447 4.023536 ACAAATAACGAAAATGACGGCAGT 60.024 37.500 0.00 0.00 34.93 4.40
6245 7448 4.472286 ACAAATAACGAAAATGACGGCAG 58.528 39.130 0.00 0.00 34.93 4.85
6272 7490 2.563620 TGACGGCAGTAGGTTTGACATA 59.436 45.455 0.00 0.00 0.00 2.29
6273 7491 1.346395 TGACGGCAGTAGGTTTGACAT 59.654 47.619 0.00 0.00 0.00 3.06
6274 7492 0.753867 TGACGGCAGTAGGTTTGACA 59.246 50.000 0.00 0.00 0.00 3.58
6275 7493 2.094762 ATGACGGCAGTAGGTTTGAC 57.905 50.000 0.00 0.00 0.00 3.18
6276 7494 2.851263 AATGACGGCAGTAGGTTTGA 57.149 45.000 0.00 0.00 0.00 2.69
6277 7495 3.915437 AAAATGACGGCAGTAGGTTTG 57.085 42.857 0.00 0.00 0.00 2.93
6278 7496 3.634910 ACAAAAATGACGGCAGTAGGTTT 59.365 39.130 0.00 0.00 0.00 3.27
6279 7497 3.219281 ACAAAAATGACGGCAGTAGGTT 58.781 40.909 0.00 0.00 0.00 3.50
6280 7498 2.858745 ACAAAAATGACGGCAGTAGGT 58.141 42.857 0.00 0.00 0.00 3.08
6281 7499 3.915437 AACAAAAATGACGGCAGTAGG 57.085 42.857 0.00 0.00 0.00 3.18
6282 7500 6.861055 ACAAATAACAAAAATGACGGCAGTAG 59.139 34.615 0.00 0.00 0.00 2.57
6283 7501 6.740110 ACAAATAACAAAAATGACGGCAGTA 58.260 32.000 0.00 0.00 0.00 2.74
6284 7502 5.596845 ACAAATAACAAAAATGACGGCAGT 58.403 33.333 0.00 0.00 0.00 4.40
6285 7503 5.920273 AGACAAATAACAAAAATGACGGCAG 59.080 36.000 0.00 0.00 0.00 4.85
6286 7504 5.837437 AGACAAATAACAAAAATGACGGCA 58.163 33.333 0.00 0.00 0.00 5.69
6287 7505 6.149633 AGAGACAAATAACAAAAATGACGGC 58.850 36.000 0.00 0.00 0.00 5.68
6288 7506 9.840427 ATAAGAGACAAATAACAAAAATGACGG 57.160 29.630 0.00 0.00 0.00 4.79
6296 7514 9.959749 GGTTTGACATAAGAGACAAATAACAAA 57.040 29.630 0.00 0.00 35.31 2.83
6297 7515 9.349713 AGGTTTGACATAAGAGACAAATAACAA 57.650 29.630 0.00 0.00 35.31 2.83
6298 7516 8.918202 AGGTTTGACATAAGAGACAAATAACA 57.082 30.769 0.00 0.00 35.31 2.41
6300 7518 9.667107 CCTAGGTTTGACATAAGAGACAAATAA 57.333 33.333 0.00 0.00 35.31 1.40
6301 7519 8.265055 CCCTAGGTTTGACATAAGAGACAAATA 58.735 37.037 8.29 0.00 35.31 1.40
6302 7520 7.037586 TCCCTAGGTTTGACATAAGAGACAAAT 60.038 37.037 8.29 0.00 35.31 2.32
6303 7521 6.271391 TCCCTAGGTTTGACATAAGAGACAAA 59.729 38.462 8.29 0.00 0.00 2.83
6304 7522 5.783360 TCCCTAGGTTTGACATAAGAGACAA 59.217 40.000 8.29 0.00 0.00 3.18
6305 7523 5.338632 TCCCTAGGTTTGACATAAGAGACA 58.661 41.667 8.29 0.00 0.00 3.41
6306 7524 5.934402 TCCCTAGGTTTGACATAAGAGAC 57.066 43.478 8.29 0.00 0.00 3.36
6307 7525 5.163301 GCATCCCTAGGTTTGACATAAGAGA 60.163 44.000 8.29 0.00 0.00 3.10
6308 7526 5.059833 GCATCCCTAGGTTTGACATAAGAG 58.940 45.833 8.29 0.00 0.00 2.85
6309 7527 4.473196 TGCATCCCTAGGTTTGACATAAGA 59.527 41.667 8.29 0.00 0.00 2.10
6310 7528 4.780815 TGCATCCCTAGGTTTGACATAAG 58.219 43.478 8.29 0.00 0.00 1.73
6311 7529 4.473196 TCTGCATCCCTAGGTTTGACATAA 59.527 41.667 8.29 0.00 0.00 1.90
6312 7530 4.037222 TCTGCATCCCTAGGTTTGACATA 58.963 43.478 8.29 0.00 0.00 2.29
6313 7531 2.846206 TCTGCATCCCTAGGTTTGACAT 59.154 45.455 8.29 0.00 0.00 3.06
6314 7532 2.027192 GTCTGCATCCCTAGGTTTGACA 60.027 50.000 8.29 6.59 0.00 3.58
6361 7579 5.041015 TCCTATAAACCAAAGGAGGCCTTA 58.959 41.667 6.77 0.00 43.92 2.69
6363 7581 3.470868 TCCTATAAACCAAAGGAGGCCT 58.529 45.455 3.86 3.86 34.46 5.19
6364 7582 3.945640 TCCTATAAACCAAAGGAGGCC 57.054 47.619 0.00 0.00 34.46 5.19
6365 7583 5.696030 AGATTCCTATAAACCAAAGGAGGC 58.304 41.667 0.00 0.00 40.43 4.70
6366 7584 7.119387 ACAAGATTCCTATAAACCAAAGGAGG 58.881 38.462 0.00 0.00 40.43 4.30
6367 7585 9.331282 CTACAAGATTCCTATAAACCAAAGGAG 57.669 37.037 0.00 0.00 40.43 3.69
6368 7586 8.272173 CCTACAAGATTCCTATAAACCAAAGGA 58.728 37.037 0.00 0.00 37.64 3.36
6369 7587 8.272173 TCCTACAAGATTCCTATAAACCAAAGG 58.728 37.037 0.00 0.00 0.00 3.11
6370 7588 9.681062 TTCCTACAAGATTCCTATAAACCAAAG 57.319 33.333 0.00 0.00 0.00 2.77
6380 7598 9.447279 TCCTATGAAATTCCTACAAGATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
6381 7599 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
6385 7603 9.621239 TCCTATCCTATGAAATTCCTACAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
6386 7604 9.621239 ATCCTATCCTATGAAATTCCTACAAGA 57.379 33.333 0.00 0.00 0.00 3.02
6426 7644 8.472007 TCCTACAAATCAAAAGGCTCTAAAAA 57.528 30.769 0.00 0.00 0.00 1.94
6427 7645 8.472007 TTCCTACAAATCAAAAGGCTCTAAAA 57.528 30.769 0.00 0.00 0.00 1.52
6428 7646 8.522830 CATTCCTACAAATCAAAAGGCTCTAAA 58.477 33.333 0.00 0.00 0.00 1.85
6429 7647 7.122650 CCATTCCTACAAATCAAAAGGCTCTAA 59.877 37.037 0.00 0.00 0.00 2.10
6430 7648 6.603201 CCATTCCTACAAATCAAAAGGCTCTA 59.397 38.462 0.00 0.00 0.00 2.43
6431 7649 5.420104 CCATTCCTACAAATCAAAAGGCTCT 59.580 40.000 0.00 0.00 0.00 4.09
6432 7650 5.418840 TCCATTCCTACAAATCAAAAGGCTC 59.581 40.000 0.00 0.00 0.00 4.70
6433 7651 5.332743 TCCATTCCTACAAATCAAAAGGCT 58.667 37.500 0.00 0.00 0.00 4.58
6434 7652 5.659440 TCCATTCCTACAAATCAAAAGGC 57.341 39.130 0.00 0.00 0.00 4.35
6435 7653 7.124750 AGGATTCCATTCCTACAAATCAAAAGG 59.875 37.037 5.29 0.00 44.50 3.11
6436 7654 8.071177 AGGATTCCATTCCTACAAATCAAAAG 57.929 34.615 5.29 0.00 44.50 2.27
6450 7668 6.192970 TCCTTCAGGAATAGGATTCCATTC 57.807 41.667 18.17 11.30 42.18 2.67
6464 7682 7.182749 TGAAGGATAGAAAGAATTCCTTCAGGA 59.817 37.037 22.78 6.96 43.73 3.86
6465 7683 7.341805 TGAAGGATAGAAAGAATTCCTTCAGG 58.658 38.462 22.78 0.00 36.12 3.86
6466 7684 8.977267 ATGAAGGATAGAAAGAATTCCTTCAG 57.023 34.615 27.50 0.00 36.12 3.02
6507 7725 8.918202 TTTCCATTGTGTCTAGACTAATGTTT 57.082 30.769 30.06 12.12 36.16 2.83
6508 7726 8.918202 TTTTCCATTGTGTCTAGACTAATGTT 57.082 30.769 30.06 12.36 36.16 2.71
6509 7727 9.520515 AATTTTCCATTGTGTCTAGACTAATGT 57.479 29.630 30.06 19.38 36.16 2.71
6521 7739 9.775854 TCACATCATAAAAATTTTCCATTGTGT 57.224 25.926 20.91 13.31 33.26 3.72
6531 7749 8.949177 GCCCTTTGATTCACATCATAAAAATTT 58.051 29.630 0.00 0.00 39.28 1.82
6532 7750 8.102047 TGCCCTTTGATTCACATCATAAAAATT 58.898 29.630 0.00 0.00 39.28 1.82
6533 7751 7.622713 TGCCCTTTGATTCACATCATAAAAAT 58.377 30.769 0.00 0.00 39.28 1.82
6534 7752 7.002250 TGCCCTTTGATTCACATCATAAAAA 57.998 32.000 0.00 0.00 39.28 1.94
6535 7753 6.602410 TGCCCTTTGATTCACATCATAAAA 57.398 33.333 0.00 0.00 39.28 1.52
6536 7754 6.608405 AGATGCCCTTTGATTCACATCATAAA 59.392 34.615 13.54 0.00 39.28 1.40
6537 7755 6.131264 AGATGCCCTTTGATTCACATCATAA 58.869 36.000 13.54 0.00 39.28 1.90
6538 7756 5.698104 AGATGCCCTTTGATTCACATCATA 58.302 37.500 13.54 0.00 39.28 2.15
6539 7757 4.543689 AGATGCCCTTTGATTCACATCAT 58.456 39.130 13.54 2.83 39.28 2.45
6540 7758 3.949754 GAGATGCCCTTTGATTCACATCA 59.050 43.478 13.54 0.00 37.67 3.07
6541 7759 3.317430 GGAGATGCCCTTTGATTCACATC 59.683 47.826 6.23 6.23 35.31 3.06
6542 7760 3.053095 AGGAGATGCCCTTTGATTCACAT 60.053 43.478 0.00 0.00 37.37 3.21
6543 7761 2.309755 AGGAGATGCCCTTTGATTCACA 59.690 45.455 0.00 0.00 37.37 3.58
6544 7762 3.010200 AGGAGATGCCCTTTGATTCAC 57.990 47.619 0.00 0.00 37.37 3.18
6545 7763 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
6553 7771 2.713708 GGAATAGGAAAGGAGATGCCCT 59.286 50.000 0.00 0.00 38.42 5.19
6554 7772 2.713708 AGGAATAGGAAAGGAGATGCCC 59.286 50.000 0.00 0.00 37.37 5.36
6555 7773 4.595350 AGTAGGAATAGGAAAGGAGATGCC 59.405 45.833 0.00 0.00 0.00 4.40
6556 7774 5.305644 TGAGTAGGAATAGGAAAGGAGATGC 59.694 44.000 0.00 0.00 0.00 3.91
6557 7775 6.985653 TGAGTAGGAATAGGAAAGGAGATG 57.014 41.667 0.00 0.00 0.00 2.90
6558 7776 8.893563 CTATGAGTAGGAATAGGAAAGGAGAT 57.106 38.462 0.00 0.00 0.00 2.75
6573 7791 7.395772 ACATGTATCTCACATCCTATGAGTAGG 59.604 40.741 0.00 0.00 44.99 3.18
6574 7792 8.347004 ACATGTATCTCACATCCTATGAGTAG 57.653 38.462 0.00 0.00 44.99 2.57
6575 7793 7.944554 TGACATGTATCTCACATCCTATGAGTA 59.055 37.037 0.00 0.00 44.99 2.59
6576 7794 6.779539 TGACATGTATCTCACATCCTATGAGT 59.220 38.462 0.00 0.00 44.99 3.41
6577 7795 7.224522 TGACATGTATCTCACATCCTATGAG 57.775 40.000 0.00 0.00 44.99 2.90
6578 7796 7.673082 AGATGACATGTATCTCACATCCTATGA 59.327 37.037 15.57 0.00 44.99 2.15
6579 7797 7.838884 AGATGACATGTATCTCACATCCTATG 58.161 38.462 15.57 0.00 44.99 2.23
6580 7798 8.065473 GAGATGACATGTATCTCACATCCTAT 57.935 38.462 24.95 9.87 44.99 2.57
6581 7799 7.459795 GAGATGACATGTATCTCACATCCTA 57.540 40.000 24.95 0.00 44.99 2.94
6582 7800 6.343716 GAGATGACATGTATCTCACATCCT 57.656 41.667 24.95 13.10 44.99 3.24
6589 7807 9.941325 AATAGGAAATGAGATGACATGTATCTC 57.059 33.333 24.04 24.04 46.82 2.75
6590 7808 9.941325 GAATAGGAAATGAGATGACATGTATCT 57.059 33.333 14.05 14.05 37.59 1.98
6591 7809 9.160496 GGAATAGGAAATGAGATGACATGTATC 57.840 37.037 0.00 2.87 0.00 2.24
6592 7810 8.888419 AGGAATAGGAAATGAGATGACATGTAT 58.112 33.333 0.00 0.00 0.00 2.29
6593 7811 8.267620 AGGAATAGGAAATGAGATGACATGTA 57.732 34.615 0.00 0.00 0.00 2.29
6594 7812 7.146715 AGGAATAGGAAATGAGATGACATGT 57.853 36.000 0.00 0.00 0.00 3.21
6595 7813 7.605691 GGTAGGAATAGGAAATGAGATGACATG 59.394 40.741 0.00 0.00 0.00 3.21
6596 7814 7.293299 TGGTAGGAATAGGAAATGAGATGACAT 59.707 37.037 0.00 0.00 0.00 3.06
6597 7815 6.615316 TGGTAGGAATAGGAAATGAGATGACA 59.385 38.462 0.00 0.00 0.00 3.58
6598 7816 7.067496 TGGTAGGAATAGGAAATGAGATGAC 57.933 40.000 0.00 0.00 0.00 3.06
6599 7817 7.878621 ATGGTAGGAATAGGAAATGAGATGA 57.121 36.000 0.00 0.00 0.00 2.92
6600 7818 8.930846 AAATGGTAGGAATAGGAAATGAGATG 57.069 34.615 0.00 0.00 0.00 2.90
6601 7819 9.579932 GAAAATGGTAGGAATAGGAAATGAGAT 57.420 33.333 0.00 0.00 0.00 2.75
6602 7820 7.998964 GGAAAATGGTAGGAATAGGAAATGAGA 59.001 37.037 0.00 0.00 0.00 3.27
6603 7821 8.001292 AGGAAAATGGTAGGAATAGGAAATGAG 58.999 37.037 0.00 0.00 0.00 2.90
6604 7822 7.779798 CAGGAAAATGGTAGGAATAGGAAATGA 59.220 37.037 0.00 0.00 0.00 2.57
6605 7823 7.779798 TCAGGAAAATGGTAGGAATAGGAAATG 59.220 37.037 0.00 0.00 0.00 2.32
6606 7824 7.882755 TCAGGAAAATGGTAGGAATAGGAAAT 58.117 34.615 0.00 0.00 0.00 2.17
6607 7825 7.278724 TCAGGAAAATGGTAGGAATAGGAAA 57.721 36.000 0.00 0.00 0.00 3.13
6608 7826 6.901615 TCAGGAAAATGGTAGGAATAGGAA 57.098 37.500 0.00 0.00 0.00 3.36
6609 7827 6.353602 GGTTCAGGAAAATGGTAGGAATAGGA 60.354 42.308 0.00 0.00 0.00 2.94
6610 7828 5.828328 GGTTCAGGAAAATGGTAGGAATAGG 59.172 44.000 0.00 0.00 0.00 2.57
6611 7829 6.423182 TGGTTCAGGAAAATGGTAGGAATAG 58.577 40.000 0.00 0.00 0.00 1.73
6612 7830 6.395780 TGGTTCAGGAAAATGGTAGGAATA 57.604 37.500 0.00 0.00 0.00 1.75
6613 7831 5.269554 TGGTTCAGGAAAATGGTAGGAAT 57.730 39.130 0.00 0.00 0.00 3.01
6614 7832 4.733077 TGGTTCAGGAAAATGGTAGGAA 57.267 40.909 0.00 0.00 0.00 3.36
6615 7833 4.733077 TTGGTTCAGGAAAATGGTAGGA 57.267 40.909 0.00 0.00 0.00 2.94
6616 7834 4.832823 ACTTTGGTTCAGGAAAATGGTAGG 59.167 41.667 0.00 0.00 0.00 3.18
6617 7835 6.151144 CCTACTTTGGTTCAGGAAAATGGTAG 59.849 42.308 0.00 0.00 0.00 3.18
6618 7836 6.007703 CCTACTTTGGTTCAGGAAAATGGTA 58.992 40.000 0.00 0.00 0.00 3.25
6619 7837 4.832823 CCTACTTTGGTTCAGGAAAATGGT 59.167 41.667 0.00 0.00 0.00 3.55
6620 7838 4.321974 GCCTACTTTGGTTCAGGAAAATGG 60.322 45.833 0.00 0.00 0.00 3.16
6621 7839 4.321974 GGCCTACTTTGGTTCAGGAAAATG 60.322 45.833 0.00 0.00 0.00 2.32
6622 7840 3.832490 GGCCTACTTTGGTTCAGGAAAAT 59.168 43.478 0.00 0.00 0.00 1.82
6623 7841 3.117284 AGGCCTACTTTGGTTCAGGAAAA 60.117 43.478 1.29 0.00 0.00 2.29
6624 7842 2.445525 AGGCCTACTTTGGTTCAGGAAA 59.554 45.455 1.29 0.00 0.00 3.13
6625 7843 2.062636 AGGCCTACTTTGGTTCAGGAA 58.937 47.619 1.29 0.00 0.00 3.36
6626 7844 1.742308 AGGCCTACTTTGGTTCAGGA 58.258 50.000 1.29 0.00 0.00 3.86
6627 7845 3.713826 TTAGGCCTACTTTGGTTCAGG 57.286 47.619 13.46 0.00 0.00 3.86
6628 7846 6.389906 CATTTTTAGGCCTACTTTGGTTCAG 58.610 40.000 13.46 0.00 0.00 3.02
6629 7847 5.279256 GCATTTTTAGGCCTACTTTGGTTCA 60.279 40.000 13.46 0.00 0.00 3.18
6630 7848 5.168569 GCATTTTTAGGCCTACTTTGGTTC 58.831 41.667 13.46 0.00 0.00 3.62
6631 7849 4.591072 TGCATTTTTAGGCCTACTTTGGTT 59.409 37.500 13.46 0.00 0.00 3.67
6632 7850 4.156477 TGCATTTTTAGGCCTACTTTGGT 58.844 39.130 13.46 0.00 0.00 3.67
6633 7851 4.799564 TGCATTTTTAGGCCTACTTTGG 57.200 40.909 13.46 3.72 0.00 3.28
6634 7852 8.947055 ATTATTGCATTTTTAGGCCTACTTTG 57.053 30.769 13.46 9.22 0.00 2.77
6635 7853 8.757877 TGATTATTGCATTTTTAGGCCTACTTT 58.242 29.630 13.46 0.00 0.00 2.66
6636 7854 8.305046 TGATTATTGCATTTTTAGGCCTACTT 57.695 30.769 13.46 0.00 0.00 2.24
6637 7855 7.896383 TGATTATTGCATTTTTAGGCCTACT 57.104 32.000 13.46 0.00 0.00 2.57
6640 7858 8.927411 AGTAATGATTATTGCATTTTTAGGCCT 58.073 29.630 11.78 11.78 37.22 5.19
6641 7859 9.196552 GAGTAATGATTATTGCATTTTTAGGCC 57.803 33.333 0.00 0.00 37.22 5.19
6642 7860 9.971922 AGAGTAATGATTATTGCATTTTTAGGC 57.028 29.630 1.35 0.00 37.22 3.93
6677 7895 7.960793 TGTAAACAAATGTAAAACGTTTTGGG 58.039 30.769 31.26 17.41 35.31 4.12
6703 7921 7.565680 CACCATAGTTGAAGTAATACTCCCTT 58.434 38.462 0.00 0.00 0.00 3.95
6721 7939 3.007723 ACATGATGAGCCTAGCACCATAG 59.992 47.826 0.00 0.00 0.00 2.23
6725 7943 1.590932 CACATGATGAGCCTAGCACC 58.409 55.000 0.00 0.00 0.00 5.01
6753 7971 1.073763 AGGACACATTGCAGTTAGGCA 59.926 47.619 0.00 0.00 43.19 4.75
6754 7972 1.826385 AGGACACATTGCAGTTAGGC 58.174 50.000 0.00 0.00 0.00 3.93
6755 7973 3.120199 CGAAAGGACACATTGCAGTTAGG 60.120 47.826 0.00 0.00 0.00 2.69
6777 7997 3.866910 TCGTAAATAAACTGGATCCACGC 59.133 43.478 11.44 0.00 0.00 5.34
6806 8026 3.994392 TCTCTTGACGCCACACTTATTTC 59.006 43.478 0.00 0.00 0.00 2.17
6844 8064 5.382618 AGCCAAACTTCAAAGCTATCAAG 57.617 39.130 0.00 0.00 30.46 3.02
6861 8092 5.012046 TGTCTCAATACTCTCTTGAAGCCAA 59.988 40.000 0.00 0.00 32.53 4.52
6866 8097 9.784531 AAAGATTTGTCTCAATACTCTCTTGAA 57.215 29.630 0.00 0.00 32.53 2.69
6904 8136 6.310941 TGGGGAGAAATGTCACTCAAAATAA 58.689 36.000 0.00 0.00 35.17 1.40
6927 8160 7.282901 TGTGTGATATGTATCAAACCTCCAATG 59.717 37.037 16.78 0.00 45.92 2.82
6928 8161 7.283127 GTGTGTGATATGTATCAAACCTCCAAT 59.717 37.037 16.78 0.00 45.92 3.16
6938 8171 7.337938 ACCAGAAATGTGTGTGATATGTATCA 58.662 34.615 0.00 0.00 40.19 2.15
6942 8175 6.003326 TGAACCAGAAATGTGTGTGATATGT 58.997 36.000 0.00 0.00 0.00 2.29
6943 8176 6.499234 TGAACCAGAAATGTGTGTGATATG 57.501 37.500 0.00 0.00 0.00 1.78
6944 8177 7.523293 TTTGAACCAGAAATGTGTGTGATAT 57.477 32.000 0.00 0.00 0.00 1.63
6945 8178 6.514870 GCTTTGAACCAGAAATGTGTGTGATA 60.515 38.462 0.00 0.00 0.00 2.15
6946 8179 5.737063 GCTTTGAACCAGAAATGTGTGTGAT 60.737 40.000 0.00 0.00 0.00 3.06
6947 8180 4.439974 GCTTTGAACCAGAAATGTGTGTGA 60.440 41.667 0.00 0.00 0.00 3.58
6948 8181 3.798337 GCTTTGAACCAGAAATGTGTGTG 59.202 43.478 0.00 0.00 0.00 3.82
6949 8182 3.489059 CGCTTTGAACCAGAAATGTGTGT 60.489 43.478 0.00 0.00 0.00 3.72
6950 8183 3.044986 CGCTTTGAACCAGAAATGTGTG 58.955 45.455 0.00 0.00 0.00 3.82
6951 8184 2.034558 CCGCTTTGAACCAGAAATGTGT 59.965 45.455 0.00 0.00 0.00 3.72
6952 8185 2.034558 ACCGCTTTGAACCAGAAATGTG 59.965 45.455 0.00 0.00 0.00 3.21
6953 8186 2.293399 GACCGCTTTGAACCAGAAATGT 59.707 45.455 0.00 0.00 0.00 2.71
6954 8187 2.554032 AGACCGCTTTGAACCAGAAATG 59.446 45.455 0.00 0.00 0.00 2.32
6955 8188 2.863809 AGACCGCTTTGAACCAGAAAT 58.136 42.857 0.00 0.00 0.00 2.17
6956 8189 2.341846 AGACCGCTTTGAACCAGAAA 57.658 45.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.