Multiple sequence alignment - TraesCS5D01G163000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G163000 chr5D 100.000 3965 0 0 2366 6330 254572917 254576881 0.000000e+00 7323.0
1 TraesCS5D01G163000 chr5D 100.000 2072 0 0 1 2072 254570552 254572623 0.000000e+00 3827.0
2 TraesCS5D01G163000 chr5D 93.386 1149 51 15 2366 3491 302437372 302436226 0.000000e+00 1677.0
3 TraesCS5D01G163000 chr5D 88.542 672 68 6 3671 4339 370717376 370718041 0.000000e+00 806.0
4 TraesCS5D01G163000 chr5D 81.051 723 119 12 3490 4205 170235824 170235113 1.660000e-155 560.0
5 TraesCS5D01G163000 chr5D 100.000 196 0 0 6632 6827 254577183 254577378 5.030000e-96 363.0
6 TraesCS5D01G163000 chr5D 91.724 145 11 1 1604 1747 228063168 228063024 4.180000e-47 200.0
7 TraesCS5D01G163000 chr5D 97.222 36 1 0 1 36 10492247 10492282 2.060000e-05 62.1
8 TraesCS5D01G163000 chr5D 97.222 36 1 0 1 36 431881164 431881199 2.060000e-05 62.1
9 TraesCS5D01G163000 chr5D 97.222 36 1 0 1 36 433531787 433531752 2.060000e-05 62.1
10 TraesCS5D01G163000 chr5D 100.000 29 0 0 4377 4405 328514030 328514058 3.000000e-03 54.7
11 TraesCS5D01G163000 chr5D 100.000 28 0 0 4371 4398 4056801 4056774 1.200000e-02 52.8
12 TraesCS5D01G163000 chr5B 94.262 1795 59 17 4548 6314 288305182 288303404 0.000000e+00 2704.0
13 TraesCS5D01G163000 chr5B 88.278 964 60 22 110 1036 288307284 288306337 0.000000e+00 1105.0
14 TraesCS5D01G163000 chr5B 89.175 582 53 9 1032 1605 288306303 288305724 0.000000e+00 717.0
15 TraesCS5D01G163000 chr5B 80.110 729 116 21 3490 4205 162103622 162102910 3.650000e-142 516.0
16 TraesCS5D01G163000 chr5B 87.244 439 45 6 3758 4185 439972641 439973079 2.210000e-134 490.0
17 TraesCS5D01G163000 chr5B 95.408 196 8 1 6632 6827 288303393 288303199 1.850000e-80 311.0
18 TraesCS5D01G163000 chr5B 94.375 160 7 1 4401 4560 288305727 288305570 1.900000e-60 244.0
19 TraesCS5D01G163000 chr5B 92.029 138 11 0 4202 4339 439985776 439985913 1.940000e-45 195.0
20 TraesCS5D01G163000 chr5B 100.000 37 0 0 160 196 288307196 288307160 1.230000e-07 69.4
21 TraesCS5D01G163000 chr5B 97.222 36 1 0 1744 1779 543283816 543283851 2.060000e-05 62.1
22 TraesCS5D01G163000 chr5B 89.796 49 1 3 1745 1792 548199148 548199193 7.390000e-05 60.2
23 TraesCS5D01G163000 chr5B 97.059 34 1 0 1746 1779 355237787 355237820 2.660000e-04 58.4
24 TraesCS5D01G163000 chr5B 94.737 38 1 1 1742 1779 512934345 512934309 2.660000e-04 58.4
25 TraesCS5D01G163000 chr5B 89.583 48 1 3 1746 1792 563694241 563694285 2.660000e-04 58.4
26 TraesCS5D01G163000 chr3A 92.938 1147 59 14 2366 3490 538019896 538021042 0.000000e+00 1650.0
27 TraesCS5D01G163000 chr3A 92.895 1126 65 14 2376 3491 24756798 24755678 0.000000e+00 1622.0
28 TraesCS5D01G163000 chr3A 89.933 149 12 2 1601 1747 726769131 726768984 9.040000e-44 189.0
29 TraesCS5D01G163000 chr2D 93.031 1148 49 10 2366 3489 34564042 34565182 0.000000e+00 1648.0
30 TraesCS5D01G163000 chr2D 82.796 837 122 19 3490 4318 577349343 577348521 0.000000e+00 728.0
31 TraesCS5D01G163000 chr2D 92.090 177 14 0 4163 4339 585521879 585521703 4.090000e-62 250.0
32 TraesCS5D01G163000 chr2D 90.541 148 12 1 1602 1747 498472995 498473142 1.940000e-45 195.0
33 TraesCS5D01G163000 chr5A 92.770 1148 58 13 2366 3491 502544097 502542953 0.000000e+00 1637.0
34 TraesCS5D01G163000 chr5A 92.026 928 22 23 160 1036 337831792 337832718 0.000000e+00 1256.0
35 TraesCS5D01G163000 chr5A 95.109 777 33 4 5145 5917 337834037 337834812 0.000000e+00 1219.0
36 TraesCS5D01G163000 chr5A 92.329 730 35 12 4401 5118 337833331 337834051 0.000000e+00 1018.0
37 TraesCS5D01G163000 chr5A 88.718 585 53 9 1032 1605 337832752 337833334 0.000000e+00 702.0
38 TraesCS5D01G163000 chr5A 87.912 455 52 3 3669 4121 473303661 473304114 3.620000e-147 532.0
39 TraesCS5D01G163000 chr5A 92.627 217 13 3 4124 4339 473305196 473305410 6.650000e-80 309.0
40 TraesCS5D01G163000 chr5A 93.750 80 5 0 86 165 337831685 337831764 3.340000e-23 121.0
41 TraesCS5D01G163000 chr4B 92.838 1131 74 5 2366 3491 18786999 18788127 0.000000e+00 1633.0
42 TraesCS5D01G163000 chr4B 91.096 146 11 1 1604 1747 28724304 28724159 5.400000e-46 196.0
43 TraesCS5D01G163000 chr6A 92.428 1149 51 12 2366 3490 35334424 35335560 0.000000e+00 1607.0
44 TraesCS5D01G163000 chr6A 91.096 146 11 1 1604 1747 442395716 442395571 5.400000e-46 196.0
45 TraesCS5D01G163000 chr3B 94.836 1007 45 6 2490 3490 75327204 75326199 0.000000e+00 1565.0
46 TraesCS5D01G163000 chr6D 92.056 1070 73 6 2430 3488 287456799 287457867 0.000000e+00 1495.0
47 TraesCS5D01G163000 chr6D 90.411 146 12 1 1604 1747 93646387 93646242 2.510000e-44 191.0
48 TraesCS5D01G163000 chr6D 97.222 36 1 0 1 36 57481289 57481324 2.060000e-05 62.1
49 TraesCS5D01G163000 chr6D 97.222 36 1 0 1 36 90093713 90093678 2.060000e-05 62.1
50 TraesCS5D01G163000 chr6D 97.222 36 1 0 1744 1779 322529290 322529325 2.060000e-05 62.1
51 TraesCS5D01G163000 chr2B 81.935 858 129 22 3490 4339 694480137 694479298 0.000000e+00 702.0
52 TraesCS5D01G163000 chr2B 81.198 835 135 19 3490 4316 722376898 722376078 0.000000e+00 652.0
53 TraesCS5D01G163000 chr2B 81.004 837 135 19 3490 4317 694428697 694427876 1.600000e-180 643.0
54 TraesCS5D01G163000 chr2B 80.645 837 139 20 3490 4317 694449300 694448478 1.620000e-175 627.0
55 TraesCS5D01G163000 chr2B 90.775 271 25 0 3483 3753 199768058 199768328 5.030000e-96 363.0
56 TraesCS5D01G163000 chr2B 90.541 148 12 1 1602 1747 585712492 585712639 1.940000e-45 195.0
57 TraesCS5D01G163000 chr2B 97.368 38 1 0 4370 4407 144647090 144647127 1.590000e-06 65.8
58 TraesCS5D01G163000 chr2B 97.143 35 1 0 1745 1779 707248522 707248556 7.390000e-05 60.2
59 TraesCS5D01G163000 chr2A 81.723 859 135 18 3490 4340 715430181 715429337 0.000000e+00 697.0
60 TraesCS5D01G163000 chr2A 77.778 369 48 19 3490 3854 543761325 543761663 5.400000e-46 196.0
61 TraesCS5D01G163000 chr2A 100.000 30 0 0 4375 4404 565317039 565317010 1.000000e-03 56.5
62 TraesCS5D01G163000 chr1B 90.066 151 14 1 1597 1747 67537608 67537459 1.940000e-45 195.0
63 TraesCS5D01G163000 chr1A 91.549 142 10 1 1608 1747 291255979 291255838 1.940000e-45 195.0
64 TraesCS5D01G163000 chrUn 97.222 36 1 0 1 36 112647902 112647937 2.060000e-05 62.1
65 TraesCS5D01G163000 chr7B 88.889 54 1 4 1741 1792 745235331 745235381 2.060000e-05 62.1
66 TraesCS5D01G163000 chr7B 100.000 31 0 0 1749 1779 41323428 41323398 2.660000e-04 58.4
67 TraesCS5D01G163000 chr4D 95.000 40 1 1 4370 4409 32940712 32940750 2.060000e-05 62.1
68 TraesCS5D01G163000 chr4D 97.222 36 1 0 1 36 413046271 413046306 2.060000e-05 62.1
69 TraesCS5D01G163000 chr3D 97.222 36 1 0 1 36 10705842 10705877 2.060000e-05 62.1
70 TraesCS5D01G163000 chr1D 97.222 36 1 0 1 36 463930740 463930705 2.060000e-05 62.1
71 TraesCS5D01G163000 chr1D 100.000 31 0 0 4370 4400 475925099 475925069 2.660000e-04 58.4
72 TraesCS5D01G163000 chr7D 97.143 35 1 0 4370 4404 69030823 69030857 7.390000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G163000 chr5D 254570552 254577378 6826 False 3837.666667 7323 100.0000 1 6827 3 chr5D.!!$F5 6826
1 TraesCS5D01G163000 chr5D 302436226 302437372 1146 True 1677.000000 1677 93.3860 2366 3491 1 chr5D.!!$R4 1125
2 TraesCS5D01G163000 chr5D 370717376 370718041 665 False 806.000000 806 88.5420 3671 4339 1 chr5D.!!$F3 668
3 TraesCS5D01G163000 chr5D 170235113 170235824 711 True 560.000000 560 81.0510 3490 4205 1 chr5D.!!$R2 715
4 TraesCS5D01G163000 chr5B 288303199 288307284 4085 True 858.400000 2704 93.5830 110 6827 6 chr5B.!!$R3 6717
5 TraesCS5D01G163000 chr5B 162102910 162103622 712 True 516.000000 516 80.1100 3490 4205 1 chr5B.!!$R1 715
6 TraesCS5D01G163000 chr3A 538019896 538021042 1146 False 1650.000000 1650 92.9380 2366 3490 1 chr3A.!!$F1 1124
7 TraesCS5D01G163000 chr3A 24755678 24756798 1120 True 1622.000000 1622 92.8950 2376 3491 1 chr3A.!!$R1 1115
8 TraesCS5D01G163000 chr2D 34564042 34565182 1140 False 1648.000000 1648 93.0310 2366 3489 1 chr2D.!!$F1 1123
9 TraesCS5D01G163000 chr2D 577348521 577349343 822 True 728.000000 728 82.7960 3490 4318 1 chr2D.!!$R1 828
10 TraesCS5D01G163000 chr5A 502542953 502544097 1144 True 1637.000000 1637 92.7700 2366 3491 1 chr5A.!!$R1 1125
11 TraesCS5D01G163000 chr5A 337831685 337834812 3127 False 863.200000 1256 92.3864 86 5917 5 chr5A.!!$F1 5831
12 TraesCS5D01G163000 chr5A 473303661 473305410 1749 False 420.500000 532 90.2695 3669 4339 2 chr5A.!!$F2 670
13 TraesCS5D01G163000 chr4B 18786999 18788127 1128 False 1633.000000 1633 92.8380 2366 3491 1 chr4B.!!$F1 1125
14 TraesCS5D01G163000 chr6A 35334424 35335560 1136 False 1607.000000 1607 92.4280 2366 3490 1 chr6A.!!$F1 1124
15 TraesCS5D01G163000 chr3B 75326199 75327204 1005 True 1565.000000 1565 94.8360 2490 3490 1 chr3B.!!$R1 1000
16 TraesCS5D01G163000 chr6D 287456799 287457867 1068 False 1495.000000 1495 92.0560 2430 3488 1 chr6D.!!$F2 1058
17 TraesCS5D01G163000 chr2B 694479298 694480137 839 True 702.000000 702 81.9350 3490 4339 1 chr2B.!!$R3 849
18 TraesCS5D01G163000 chr2B 722376078 722376898 820 True 652.000000 652 81.1980 3490 4316 1 chr2B.!!$R4 826
19 TraesCS5D01G163000 chr2B 694427876 694428697 821 True 643.000000 643 81.0040 3490 4317 1 chr2B.!!$R1 827
20 TraesCS5D01G163000 chr2B 694448478 694449300 822 True 627.000000 627 80.6450 3490 4317 1 chr2B.!!$R2 827
21 TraesCS5D01G163000 chr2A 715429337 715430181 844 True 697.000000 697 81.7230 3490 4340 1 chr2A.!!$R2 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 320 0.250252 TGCTCCAACGCATCAAGTGA 60.250 50.000 0.00 0.00 34.44 3.41 F
1776 1926 0.037232 GCTCTCGCCCCGCTTTATAT 60.037 55.000 0.00 0.00 0.00 0.86 F
1814 1964 0.182061 ATGATCCGAGCTTGCCACAT 59.818 50.000 0.00 0.00 0.00 3.21 F
1824 1974 0.388134 CTTGCCACATGCTTGCACTC 60.388 55.000 4.10 0.00 42.00 3.51 F
1826 1976 0.824595 TGCCACATGCTTGCACTCTT 60.825 50.000 0.00 0.00 42.00 2.85 F
1827 1977 0.388134 GCCACATGCTTGCACTCTTG 60.388 55.000 0.00 0.00 36.87 3.02 F
3814 4048 0.810648 TAACCACGACGTCGCCTTAT 59.189 50.000 35.92 20.84 44.43 1.73 F
3880 4125 1.068250 GCTAGAGCAGGCTTACCCG 59.932 63.158 0.00 0.00 41.59 5.28 F
3923 4168 1.269936 ACGTAGTACAACAGGCCACAC 60.270 52.381 5.01 0.00 41.94 3.82 F
4322 5652 1.330655 ATCATCCCTCAACGGCGAGT 61.331 55.000 16.62 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 1945 0.182061 ATGTGGCAAGCTCGGATCAT 59.818 50.000 0.00 0.0 0.00 2.45 R
3650 3883 0.161870 GTCTCTTCGCGTTGACTTGC 59.838 55.000 5.77 0.0 0.00 4.01 R
3652 3885 0.309922 TCGTCTCTTCGCGTTGACTT 59.690 50.000 5.77 0.0 0.00 3.01 R
3658 3891 1.154450 CGACTTCGTCTCTTCGCGT 60.154 57.895 5.77 0.0 34.11 6.01 R
3814 4048 3.235481 TGGGCGTCGGTTCCTTCA 61.235 61.111 0.00 0.0 0.00 3.02 R
3850 4092 2.039462 TCTAGCTCTGCCAGGCCA 59.961 61.111 9.64 0.0 0.00 5.36 R
4939 6676 3.590182 CCCAAAAGGTAGGTTCCTTCCTA 59.410 47.826 15.58 0.0 45.79 2.94 R
5023 6760 5.261209 ACAAAATGACACTAGCAGCAAAA 57.739 34.783 0.00 0.0 0.00 2.44 R
5580 7322 6.263617 GGGTTACCTTGTTGTAAAATGTGAGA 59.736 38.462 0.00 0.0 32.81 3.27 R
6117 7886 4.137543 GACAGCCCCCAATATGAGTAAAG 58.862 47.826 0.00 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.600470 AACGGTTCGGTGTGACTTAA 57.400 45.000 0.00 0.00 0.00 1.85
21 22 2.600470 ACGGTTCGGTGTGACTTAAA 57.400 45.000 0.00 0.00 0.00 1.52
22 23 3.116079 ACGGTTCGGTGTGACTTAAAT 57.884 42.857 0.00 0.00 0.00 1.40
23 24 3.062042 ACGGTTCGGTGTGACTTAAATC 58.938 45.455 0.00 0.00 0.00 2.17
24 25 3.243975 ACGGTTCGGTGTGACTTAAATCT 60.244 43.478 0.00 0.00 0.00 2.40
25 26 3.122948 CGGTTCGGTGTGACTTAAATCTG 59.877 47.826 0.00 0.00 0.00 2.90
26 27 3.435671 GGTTCGGTGTGACTTAAATCTGG 59.564 47.826 0.00 0.00 0.00 3.86
27 28 4.312443 GTTCGGTGTGACTTAAATCTGGA 58.688 43.478 0.00 0.00 0.00 3.86
28 29 3.921677 TCGGTGTGACTTAAATCTGGAC 58.078 45.455 0.00 0.00 0.00 4.02
29 30 3.322541 TCGGTGTGACTTAAATCTGGACA 59.677 43.478 0.00 0.00 0.00 4.02
30 31 3.679980 CGGTGTGACTTAAATCTGGACAG 59.320 47.826 0.00 0.00 0.00 3.51
31 32 3.437049 GGTGTGACTTAAATCTGGACAGC 59.563 47.826 0.00 0.00 0.00 4.40
32 33 3.123621 GTGTGACTTAAATCTGGACAGCG 59.876 47.826 0.00 0.00 0.00 5.18
33 34 2.673368 GTGACTTAAATCTGGACAGCGG 59.327 50.000 0.00 0.00 0.00 5.52
34 35 2.280628 GACTTAAATCTGGACAGCGGG 58.719 52.381 0.00 0.00 0.00 6.13
35 36 1.628846 ACTTAAATCTGGACAGCGGGT 59.371 47.619 0.00 0.00 0.00 5.28
36 37 2.280628 CTTAAATCTGGACAGCGGGTC 58.719 52.381 3.28 3.28 46.20 4.46
43 44 4.459089 GACAGCGGGTCAGGGAGC 62.459 72.222 6.68 0.00 46.19 4.70
45 46 3.710722 CAGCGGGTCAGGGAGCTT 61.711 66.667 0.00 0.00 37.94 3.74
46 47 3.710722 AGCGGGTCAGGGAGCTTG 61.711 66.667 0.00 0.00 36.41 4.01
47 48 4.785453 GCGGGTCAGGGAGCTTGG 62.785 72.222 0.00 0.00 0.00 3.61
48 49 4.101448 CGGGTCAGGGAGCTTGGG 62.101 72.222 0.00 0.00 0.00 4.12
49 50 2.936032 GGGTCAGGGAGCTTGGGT 60.936 66.667 0.00 0.00 0.00 4.51
50 51 2.671682 GGTCAGGGAGCTTGGGTC 59.328 66.667 0.00 0.00 0.00 4.46
51 52 1.920835 GGTCAGGGAGCTTGGGTCT 60.921 63.158 0.00 0.00 0.00 3.85
52 53 1.599576 GTCAGGGAGCTTGGGTCTC 59.400 63.158 0.00 0.00 0.00 3.36
53 54 1.984570 TCAGGGAGCTTGGGTCTCG 60.985 63.158 0.00 0.00 35.47 4.04
54 55 3.394836 AGGGAGCTTGGGTCTCGC 61.395 66.667 0.00 0.00 41.93 5.03
55 56 4.821589 GGGAGCTTGGGTCTCGCG 62.822 72.222 0.00 0.00 34.58 5.87
56 57 4.821589 GGAGCTTGGGTCTCGCGG 62.822 72.222 6.13 0.00 0.00 6.46
72 73 4.537433 GGCCGGCTCTCGATTGCT 62.537 66.667 28.56 0.00 42.43 3.91
73 74 2.964389 GCCGGCTCTCGATTGCTC 60.964 66.667 22.15 0.00 42.43 4.26
74 75 2.656651 CCGGCTCTCGATTGCTCG 60.657 66.667 9.17 10.19 46.41 5.03
75 76 3.326210 CGGCTCTCGATTGCTCGC 61.326 66.667 9.17 0.00 44.65 5.03
76 77 2.202797 GGCTCTCGATTGCTCGCA 60.203 61.111 9.17 0.00 44.65 5.10
77 78 2.520904 GGCTCTCGATTGCTCGCAC 61.521 63.158 9.17 0.00 44.65 5.34
78 79 2.854214 GCTCTCGATTGCTCGCACG 61.854 63.158 0.00 0.00 44.65 5.34
79 80 1.515088 CTCTCGATTGCTCGCACGT 60.515 57.895 0.00 0.00 44.65 4.49
80 81 1.467556 CTCTCGATTGCTCGCACGTC 61.468 60.000 0.00 0.00 44.65 4.34
81 82 2.506217 TCGATTGCTCGCACGTCC 60.506 61.111 0.00 0.00 44.65 4.79
82 83 3.902063 CGATTGCTCGCACGTCCG 61.902 66.667 0.00 0.00 38.20 4.79
83 84 2.809601 GATTGCTCGCACGTCCGT 60.810 61.111 0.00 0.00 0.00 4.69
84 85 2.357034 ATTGCTCGCACGTCCGTT 60.357 55.556 0.00 0.00 0.00 4.44
96 97 3.855950 GCACGTCCGTTATATATGTAGCC 59.144 47.826 0.00 0.00 0.00 3.93
153 154 4.640771 AACCAGGTTCTTAATCTGCTGA 57.359 40.909 0.00 0.00 0.00 4.26
222 260 6.360681 CGTTTTCCTGACAATAAAGCAGAAAG 59.639 38.462 0.00 0.00 0.00 2.62
246 319 0.592637 TTGCTCCAACGCATCAAGTG 59.407 50.000 0.00 0.00 40.04 3.16
247 320 0.250252 TGCTCCAACGCATCAAGTGA 60.250 50.000 0.00 0.00 34.44 3.41
248 321 1.089920 GCTCCAACGCATCAAGTGAT 58.910 50.000 0.00 0.00 34.56 3.06
249 322 1.470098 GCTCCAACGCATCAAGTGATT 59.530 47.619 0.00 0.00 31.21 2.57
250 323 2.095059 GCTCCAACGCATCAAGTGATTT 60.095 45.455 0.00 0.00 31.21 2.17
261 334 5.163764 GCATCAAGTGATTTACATGTTCGGA 60.164 40.000 2.30 0.00 31.21 4.55
310 384 8.667076 AATAATTCAATAGGCTGGATTTTTGC 57.333 30.769 0.00 0.00 0.00 3.68
399 473 2.213499 AGAACAGACTTTGCTTGGACG 58.787 47.619 0.00 0.00 0.00 4.79
437 512 6.488006 TGCATATATTCTGCTTTCTCCTTTCC 59.512 38.462 10.29 0.00 40.34 3.13
565 659 2.363038 CAAATGGGCCGATCATGATGTT 59.637 45.455 14.30 0.00 0.00 2.71
868 962 8.162878 ACTTCATGCATGGATATAAAGAACAG 57.837 34.615 25.97 3.98 0.00 3.16
882 980 3.626028 AGAACAGGACGAACAAAATGC 57.374 42.857 0.00 0.00 0.00 3.56
900 998 2.167662 TGCGAACTGTCCACAGATCTA 58.832 47.619 13.75 1.05 46.59 1.98
904 1002 3.440522 CGAACTGTCCACAGATCTAGACA 59.559 47.826 13.75 17.00 46.59 3.41
1060 1198 3.795623 TCGTTCCTACCTTATGCTGAC 57.204 47.619 0.00 0.00 0.00 3.51
1067 1205 7.280205 CGTTCCTACCTTATGCTGACTATTTTT 59.720 37.037 0.00 0.00 0.00 1.94
1093 1235 2.184385 GCATTCGGCATTGAGTTCTG 57.816 50.000 0.00 0.00 43.97 3.02
1148 1294 8.607441 TGTAATAGCATGTTACTGAATGATCC 57.393 34.615 0.00 0.00 34.08 3.36
1152 1298 4.943705 AGCATGTTACTGAATGATCCGTTT 59.056 37.500 0.00 0.00 0.00 3.60
1154 1300 5.572211 CATGTTACTGAATGATCCGTTTGG 58.428 41.667 0.00 0.00 0.00 3.28
1189 1335 5.117592 GCAGGAATATATTTCAAATGCACGC 59.882 40.000 6.52 0.00 0.00 5.34
1218 1364 3.356290 ACCTCTTTACATGCCAATGGAC 58.644 45.455 2.05 0.00 38.19 4.02
1228 1374 1.203288 TGCCAATGGACCCCTTCAAAT 60.203 47.619 2.05 0.00 0.00 2.32
1229 1375 1.207811 GCCAATGGACCCCTTCAAATG 59.792 52.381 2.05 0.00 0.00 2.32
1230 1376 1.832998 CCAATGGACCCCTTCAAATGG 59.167 52.381 0.00 0.00 0.00 3.16
1258 1404 4.275443 CCAAAAGCTCTCATCTTCCTATGC 59.725 45.833 0.00 0.00 0.00 3.14
1349 1495 5.695851 AATAGAACTCTGCAGTGTTTTGG 57.304 39.130 29.10 9.13 32.63 3.28
1370 1516 8.706492 TTTGGGTCATATAGTTTAACTGTACG 57.294 34.615 8.00 0.00 0.00 3.67
1372 1518 5.693555 GGGTCATATAGTTTAACTGTACGCC 59.306 44.000 8.00 8.32 0.00 5.68
1375 1521 6.976925 GTCATATAGTTTAACTGTACGCCTGT 59.023 38.462 8.00 0.00 0.00 4.00
1383 1529 2.480845 ACTGTACGCCTGTTGTTCTTC 58.519 47.619 0.00 0.00 0.00 2.87
1444 1590 4.322080 TGAGAGGTAAATAGCATGACCG 57.678 45.455 0.00 0.00 37.04 4.79
1459 1605 3.907894 TGACCGTTTGGCTTTTATGTC 57.092 42.857 0.00 0.00 39.70 3.06
1461 1607 1.890489 ACCGTTTGGCTTTTATGTCCC 59.110 47.619 0.00 0.00 39.70 4.46
1465 1611 3.611530 CGTTTGGCTTTTATGTCCCTGTG 60.612 47.826 0.00 0.00 0.00 3.66
1468 1614 1.745653 GGCTTTTATGTCCCTGTGCTC 59.254 52.381 0.00 0.00 0.00 4.26
1470 1616 2.819608 GCTTTTATGTCCCTGTGCTCAA 59.180 45.455 0.00 0.00 0.00 3.02
1473 1619 3.788227 TTATGTCCCTGTGCTCAACTT 57.212 42.857 0.00 0.00 0.00 2.66
1475 1621 2.839486 TGTCCCTGTGCTCAACTTAG 57.161 50.000 0.00 0.00 0.00 2.18
1476 1622 2.047061 TGTCCCTGTGCTCAACTTAGT 58.953 47.619 0.00 0.00 0.00 2.24
1477 1623 3.236047 TGTCCCTGTGCTCAACTTAGTA 58.764 45.455 0.00 0.00 0.00 1.82
1478 1624 3.838317 TGTCCCTGTGCTCAACTTAGTAT 59.162 43.478 0.00 0.00 0.00 2.12
1479 1625 5.020795 TGTCCCTGTGCTCAACTTAGTATA 58.979 41.667 0.00 0.00 0.00 1.47
1480 1626 5.482526 TGTCCCTGTGCTCAACTTAGTATAA 59.517 40.000 0.00 0.00 0.00 0.98
1508 1657 2.149578 GCCTCTGCGCTGATTCATAAT 58.850 47.619 17.78 0.00 0.00 1.28
1513 1662 6.092670 GCCTCTGCGCTGATTCATAATTAATA 59.907 38.462 17.78 0.00 0.00 0.98
1514 1663 7.361201 GCCTCTGCGCTGATTCATAATTAATAA 60.361 37.037 17.78 0.00 0.00 1.40
1552 1702 4.763073 AGATGTGATCATATACCCATGCG 58.237 43.478 4.77 0.00 34.06 4.73
1553 1703 3.333029 TGTGATCATATACCCATGCGG 57.667 47.619 0.00 0.00 37.81 5.69
1560 1710 1.064003 TATACCCATGCGGCAATCCT 58.936 50.000 6.82 0.00 33.26 3.24
1573 1723 5.105146 TGCGGCAATCCTATTTTTATTTGGT 60.105 36.000 0.00 0.00 0.00 3.67
1590 1740 9.887406 TTTATTTGGTTTAACGCTAAAGAAGAG 57.113 29.630 0.00 0.00 0.00 2.85
1597 1747 2.846193 ACGCTAAAGAAGAGCAACCAA 58.154 42.857 0.00 0.00 40.09 3.67
1601 1751 5.472137 ACGCTAAAGAAGAGCAACCAAATAA 59.528 36.000 0.00 0.00 40.09 1.40
1602 1752 6.024049 CGCTAAAGAAGAGCAACCAAATAAG 58.976 40.000 0.00 0.00 40.09 1.73
1603 1753 6.348540 CGCTAAAGAAGAGCAACCAAATAAGT 60.349 38.462 0.00 0.00 40.09 2.24
1604 1754 7.148474 CGCTAAAGAAGAGCAACCAAATAAGTA 60.148 37.037 0.00 0.00 40.09 2.24
1605 1755 7.963465 GCTAAAGAAGAGCAACCAAATAAGTAC 59.037 37.037 0.00 0.00 39.84 2.73
1606 1756 6.819397 AAGAAGAGCAACCAAATAAGTACC 57.181 37.500 0.00 0.00 0.00 3.34
1607 1757 5.254115 AGAAGAGCAACCAAATAAGTACCC 58.746 41.667 0.00 0.00 0.00 3.69
1608 1758 3.964411 AGAGCAACCAAATAAGTACCCC 58.036 45.455 0.00 0.00 0.00 4.95
1609 1759 3.021695 GAGCAACCAAATAAGTACCCCC 58.978 50.000 0.00 0.00 0.00 5.40
1610 1760 2.652857 AGCAACCAAATAAGTACCCCCT 59.347 45.455 0.00 0.00 0.00 4.79
1611 1761 3.021695 GCAACCAAATAAGTACCCCCTC 58.978 50.000 0.00 0.00 0.00 4.30
1612 1762 3.628008 CAACCAAATAAGTACCCCCTCC 58.372 50.000 0.00 0.00 0.00 4.30
1613 1763 1.841919 ACCAAATAAGTACCCCCTCCG 59.158 52.381 0.00 0.00 0.00 4.63
1614 1764 1.841919 CCAAATAAGTACCCCCTCCGT 59.158 52.381 0.00 0.00 0.00 4.69
1615 1765 2.240414 CCAAATAAGTACCCCCTCCGTT 59.760 50.000 0.00 0.00 0.00 4.44
1616 1766 3.308617 CCAAATAAGTACCCCCTCCGTTT 60.309 47.826 0.00 0.00 0.00 3.60
1617 1767 3.920231 AATAAGTACCCCCTCCGTTTC 57.080 47.619 0.00 0.00 0.00 2.78
1618 1768 2.629017 TAAGTACCCCCTCCGTTTCT 57.371 50.000 0.00 0.00 0.00 2.52
1619 1769 2.629017 AAGTACCCCCTCCGTTTCTA 57.371 50.000 0.00 0.00 0.00 2.10
1620 1770 2.629017 AGTACCCCCTCCGTTTCTAA 57.371 50.000 0.00 0.00 0.00 2.10
1621 1771 2.906568 AGTACCCCCTCCGTTTCTAAA 58.093 47.619 0.00 0.00 0.00 1.85
1622 1772 3.457836 AGTACCCCCTCCGTTTCTAAAT 58.542 45.455 0.00 0.00 0.00 1.40
1623 1773 4.623863 AGTACCCCCTCCGTTTCTAAATA 58.376 43.478 0.00 0.00 0.00 1.40
1624 1774 5.222086 AGTACCCCCTCCGTTTCTAAATAT 58.778 41.667 0.00 0.00 0.00 1.28
1625 1775 6.384603 AGTACCCCCTCCGTTTCTAAATATA 58.615 40.000 0.00 0.00 0.00 0.86
1626 1776 6.845975 AGTACCCCCTCCGTTTCTAAATATAA 59.154 38.462 0.00 0.00 0.00 0.98
1627 1777 6.183810 ACCCCCTCCGTTTCTAAATATAAG 57.816 41.667 0.00 0.00 0.00 1.73
1628 1778 5.001874 CCCCCTCCGTTTCTAAATATAAGC 58.998 45.833 0.00 0.00 0.00 3.09
1629 1779 5.001874 CCCCTCCGTTTCTAAATATAAGCC 58.998 45.833 0.00 0.00 0.00 4.35
1630 1780 5.221864 CCCCTCCGTTTCTAAATATAAGCCT 60.222 44.000 0.00 0.00 0.00 4.58
1631 1781 6.296803 CCCTCCGTTTCTAAATATAAGCCTT 58.703 40.000 0.00 0.00 0.00 4.35
1632 1782 6.771267 CCCTCCGTTTCTAAATATAAGCCTTT 59.229 38.462 0.00 0.00 0.00 3.11
1633 1783 7.284716 CCCTCCGTTTCTAAATATAAGCCTTTT 59.715 37.037 0.00 0.00 0.00 2.27
1634 1784 8.683615 CCTCCGTTTCTAAATATAAGCCTTTTT 58.316 33.333 0.00 0.00 0.00 1.94
1660 1810 8.980143 AAAAATTTCAATAAGGACCACATACG 57.020 30.769 0.00 0.00 0.00 3.06
1661 1811 6.693315 AATTTCAATAAGGACCACATACGG 57.307 37.500 0.00 0.00 0.00 4.02
1662 1812 5.423704 TTTCAATAAGGACCACATACGGA 57.576 39.130 0.00 0.00 0.00 4.69
1663 1813 5.623956 TTCAATAAGGACCACATACGGAT 57.376 39.130 0.00 0.00 0.00 4.18
1664 1814 4.956085 TCAATAAGGACCACATACGGATG 58.044 43.478 5.94 5.94 39.16 3.51
1666 1816 5.599242 TCAATAAGGACCACATACGGATGTA 59.401 40.000 14.23 0.00 44.82 2.29
1667 1817 6.269077 TCAATAAGGACCACATACGGATGTAT 59.731 38.462 14.23 4.48 44.82 2.29
1668 1818 7.452189 TCAATAAGGACCACATACGGATGTATA 59.548 37.037 14.23 0.92 44.82 1.47
1669 1819 7.973048 ATAAGGACCACATACGGATGTATAT 57.027 36.000 14.23 1.16 44.82 0.86
1670 1820 9.483489 AATAAGGACCACATACGGATGTATATA 57.517 33.333 14.23 1.97 44.82 0.86
1671 1821 7.406031 AAGGACCACATACGGATGTATATAG 57.594 40.000 14.23 0.00 44.82 1.31
1672 1822 6.728411 AGGACCACATACGGATGTATATAGA 58.272 40.000 14.23 0.00 44.82 1.98
1673 1823 7.179966 AGGACCACATACGGATGTATATAGAA 58.820 38.462 14.23 0.00 44.82 2.10
1674 1824 7.339721 AGGACCACATACGGATGTATATAGAAG 59.660 40.741 14.23 0.00 44.82 2.85
1675 1825 7.122353 GGACCACATACGGATGTATATAGAAGT 59.878 40.741 14.23 1.09 44.82 3.01
1676 1826 9.170734 GACCACATACGGATGTATATAGAAGTA 57.829 37.037 14.23 0.00 44.82 2.24
1677 1827 9.696572 ACCACATACGGATGTATATAGAAGTAT 57.303 33.333 14.23 0.00 44.82 2.12
1704 1854 6.734104 AGAGTGTAGATTCATTCACTTTGC 57.266 37.500 8.84 0.00 40.53 3.68
1705 1855 6.471146 AGAGTGTAGATTCATTCACTTTGCT 58.529 36.000 8.84 0.00 40.53 3.91
1706 1856 6.593382 AGAGTGTAGATTCATTCACTTTGCTC 59.407 38.462 8.84 0.00 40.53 4.26
1707 1857 5.645497 AGTGTAGATTCATTCACTTTGCTCC 59.355 40.000 0.00 0.00 37.81 4.70
1708 1858 4.631377 TGTAGATTCATTCACTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1709 1859 3.679389 AGATTCATTCACTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1710 1860 4.832248 AGATTCATTCACTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1711 1861 5.431765 AGATTCATTCACTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1712 1862 4.944962 TTCATTCACTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1713 1863 3.937814 TCATTCACTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1714 1864 5.079689 TCATTCACTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1715 1865 5.109210 TCATTCACTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1716 1866 4.530710 TTCACTTTGCTCCGTATGTAGT 57.469 40.909 0.00 0.00 0.00 2.73
1717 1867 4.106029 TCACTTTGCTCCGTATGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
1718 1868 3.119245 TCACTTTGCTCCGTATGTAGTCC 60.119 47.826 0.00 0.00 0.00 3.85
1719 1869 2.829720 ACTTTGCTCCGTATGTAGTCCA 59.170 45.455 0.00 0.00 0.00 4.02
1720 1870 3.451178 ACTTTGCTCCGTATGTAGTCCAT 59.549 43.478 0.00 0.00 37.58 3.41
1721 1871 4.081087 ACTTTGCTCCGTATGTAGTCCATT 60.081 41.667 0.00 0.00 34.86 3.16
1722 1872 3.452755 TGCTCCGTATGTAGTCCATTG 57.547 47.619 0.00 0.00 34.86 2.82
1723 1873 2.102420 TGCTCCGTATGTAGTCCATTGG 59.898 50.000 0.00 0.00 34.86 3.16
1724 1874 2.364324 GCTCCGTATGTAGTCCATTGGA 59.636 50.000 0.00 0.00 36.22 3.53
1725 1875 3.181469 GCTCCGTATGTAGTCCATTGGAA 60.181 47.826 7.05 0.00 36.80 3.53
1726 1876 4.503296 GCTCCGTATGTAGTCCATTGGAAT 60.503 45.833 10.92 10.92 36.80 3.01
1727 1877 5.209818 TCCGTATGTAGTCCATTGGAATC 57.790 43.478 9.28 2.62 35.26 2.52
1728 1878 4.899457 TCCGTATGTAGTCCATTGGAATCT 59.101 41.667 9.28 5.01 35.26 2.40
1729 1879 5.010719 TCCGTATGTAGTCCATTGGAATCTC 59.989 44.000 9.28 5.25 35.26 2.75
1730 1880 5.011125 CCGTATGTAGTCCATTGGAATCTCT 59.989 44.000 9.28 3.90 34.86 3.10
1731 1881 6.208797 CCGTATGTAGTCCATTGGAATCTCTA 59.791 42.308 9.28 2.89 34.86 2.43
1732 1882 7.255836 CCGTATGTAGTCCATTGGAATCTCTAA 60.256 40.741 9.28 0.00 34.86 2.10
1733 1883 8.141909 CGTATGTAGTCCATTGGAATCTCTAAA 58.858 37.037 9.28 1.36 34.86 1.85
1734 1884 9.832445 GTATGTAGTCCATTGGAATCTCTAAAA 57.168 33.333 9.28 0.00 34.86 1.52
1736 1886 8.792830 TGTAGTCCATTGGAATCTCTAAAAAG 57.207 34.615 9.28 0.00 31.38 2.27
1737 1887 7.829211 TGTAGTCCATTGGAATCTCTAAAAAGG 59.171 37.037 9.28 0.00 31.38 3.11
1738 1888 5.654209 AGTCCATTGGAATCTCTAAAAAGGC 59.346 40.000 7.05 0.00 31.38 4.35
1739 1889 5.654209 GTCCATTGGAATCTCTAAAAAGGCT 59.346 40.000 7.05 0.00 31.38 4.58
1740 1890 6.153510 GTCCATTGGAATCTCTAAAAAGGCTT 59.846 38.462 7.05 0.00 31.38 4.35
1741 1891 7.339466 GTCCATTGGAATCTCTAAAAAGGCTTA 59.661 37.037 7.05 0.00 31.38 3.09
1742 1892 8.061304 TCCATTGGAATCTCTAAAAAGGCTTAT 58.939 33.333 1.94 0.00 0.00 1.73
1743 1893 9.354673 CCATTGGAATCTCTAAAAAGGCTTATA 57.645 33.333 0.00 0.00 0.00 0.98
1748 1898 9.684448 GGAATCTCTAAAAAGGCTTATATTTGC 57.316 33.333 0.00 0.00 0.00 3.68
1774 1924 2.109181 GCTCTCGCCCCGCTTTAT 59.891 61.111 0.00 0.00 0.00 1.40
1775 1925 1.366366 GCTCTCGCCCCGCTTTATA 59.634 57.895 0.00 0.00 0.00 0.98
1776 1926 0.037232 GCTCTCGCCCCGCTTTATAT 60.037 55.000 0.00 0.00 0.00 0.86
1777 1927 1.203994 GCTCTCGCCCCGCTTTATATA 59.796 52.381 0.00 0.00 0.00 0.86
1778 1928 2.159085 GCTCTCGCCCCGCTTTATATAT 60.159 50.000 0.00 0.00 0.00 0.86
1779 1929 3.448686 CTCTCGCCCCGCTTTATATATG 58.551 50.000 0.00 0.00 0.00 1.78
1780 1930 2.829720 TCTCGCCCCGCTTTATATATGT 59.170 45.455 0.00 0.00 0.00 2.29
1781 1931 4.018490 TCTCGCCCCGCTTTATATATGTA 58.982 43.478 0.00 0.00 0.00 2.29
1782 1932 4.647853 TCTCGCCCCGCTTTATATATGTAT 59.352 41.667 0.00 0.00 0.00 2.29
1783 1933 5.829391 TCTCGCCCCGCTTTATATATGTATA 59.171 40.000 0.00 0.00 0.00 1.47
1784 1934 6.321945 TCTCGCCCCGCTTTATATATGTATAA 59.678 38.462 0.00 0.00 32.34 0.98
1785 1935 6.876155 TCGCCCCGCTTTATATATGTATAAA 58.124 36.000 12.46 12.46 39.34 1.40
1802 1952 7.368480 TGTATAAAGCAATGATCATGATCCG 57.632 36.000 28.61 19.13 37.02 4.18
1803 1953 7.160726 TGTATAAAGCAATGATCATGATCCGA 58.839 34.615 28.61 14.62 37.02 4.55
1804 1954 6.738832 ATAAAGCAATGATCATGATCCGAG 57.261 37.500 28.61 19.48 37.02 4.63
1805 1955 2.424557 AGCAATGATCATGATCCGAGC 58.575 47.619 28.61 26.19 37.02 5.03
1806 1956 2.038689 AGCAATGATCATGATCCGAGCT 59.961 45.455 28.61 27.59 37.02 4.09
1807 1957 2.812591 GCAATGATCATGATCCGAGCTT 59.187 45.455 28.61 13.67 37.02 3.74
1808 1958 3.365064 GCAATGATCATGATCCGAGCTTG 60.365 47.826 28.61 22.35 37.02 4.01
1809 1959 1.875009 TGATCATGATCCGAGCTTGC 58.125 50.000 28.61 5.85 37.02 4.01
1810 1960 1.155042 GATCATGATCCGAGCTTGCC 58.845 55.000 22.91 0.00 31.76 4.52
1811 1961 0.471191 ATCATGATCCGAGCTTGCCA 59.529 50.000 1.18 0.00 0.00 4.92
1812 1962 0.462581 TCATGATCCGAGCTTGCCAC 60.463 55.000 0.00 0.00 0.00 5.01
1813 1963 0.745486 CATGATCCGAGCTTGCCACA 60.745 55.000 0.00 0.00 0.00 4.17
1814 1964 0.182061 ATGATCCGAGCTTGCCACAT 59.818 50.000 0.00 0.00 0.00 3.21
1815 1965 0.745486 TGATCCGAGCTTGCCACATG 60.745 55.000 0.00 0.00 0.00 3.21
1816 1966 2.056481 GATCCGAGCTTGCCACATGC 62.056 60.000 0.00 0.00 41.77 4.06
1817 1967 2.547640 ATCCGAGCTTGCCACATGCT 62.548 55.000 7.60 7.60 45.32 3.79
1818 1968 2.338015 CCGAGCTTGCCACATGCTT 61.338 57.895 9.06 0.00 43.27 3.91
1819 1969 1.154093 CGAGCTTGCCACATGCTTG 60.154 57.895 9.06 8.47 43.27 4.01
1820 1970 1.445582 GAGCTTGCCACATGCTTGC 60.446 57.895 9.06 0.00 43.27 4.01
1821 1971 2.149803 GAGCTTGCCACATGCTTGCA 62.150 55.000 9.06 0.00 43.27 4.08
1822 1972 2.025418 GCTTGCCACATGCTTGCAC 61.025 57.895 4.10 0.00 42.00 4.57
1823 1973 1.663739 CTTGCCACATGCTTGCACT 59.336 52.632 4.10 0.00 42.00 4.40
1824 1974 0.388134 CTTGCCACATGCTTGCACTC 60.388 55.000 4.10 0.00 42.00 3.51
1825 1975 0.824595 TTGCCACATGCTTGCACTCT 60.825 50.000 4.10 0.00 42.00 3.24
1826 1976 0.824595 TGCCACATGCTTGCACTCTT 60.825 50.000 0.00 0.00 42.00 2.85
1827 1977 0.388134 GCCACATGCTTGCACTCTTG 60.388 55.000 0.00 0.00 36.87 3.02
1828 1978 0.956633 CCACATGCTTGCACTCTTGT 59.043 50.000 0.00 0.00 0.00 3.16
1829 1979 2.153645 CCACATGCTTGCACTCTTGTA 58.846 47.619 0.00 0.00 0.00 2.41
1830 1980 2.553602 CCACATGCTTGCACTCTTGTAA 59.446 45.455 0.00 0.00 0.00 2.41
1831 1981 3.558505 CACATGCTTGCACTCTTGTAAC 58.441 45.455 0.00 0.00 0.00 2.50
1832 1982 3.251729 CACATGCTTGCACTCTTGTAACT 59.748 43.478 0.00 0.00 0.00 2.24
1833 1983 4.452114 CACATGCTTGCACTCTTGTAACTA 59.548 41.667 0.00 0.00 0.00 2.24
1834 1984 5.122869 CACATGCTTGCACTCTTGTAACTAT 59.877 40.000 0.00 0.00 0.00 2.12
1835 1985 6.313658 CACATGCTTGCACTCTTGTAACTATA 59.686 38.462 0.00 0.00 0.00 1.31
1836 1986 6.536582 ACATGCTTGCACTCTTGTAACTATAG 59.463 38.462 0.00 0.00 0.00 1.31
1837 1987 5.419542 TGCTTGCACTCTTGTAACTATAGG 58.580 41.667 4.43 0.00 0.00 2.57
1838 1988 5.186992 TGCTTGCACTCTTGTAACTATAGGA 59.813 40.000 4.43 0.00 0.00 2.94
1839 1989 6.127054 TGCTTGCACTCTTGTAACTATAGGAT 60.127 38.462 4.43 0.00 0.00 3.24
1840 1990 6.422400 GCTTGCACTCTTGTAACTATAGGATC 59.578 42.308 4.43 0.00 0.00 3.36
1841 1991 7.418337 TTGCACTCTTGTAACTATAGGATCA 57.582 36.000 4.43 0.00 0.00 2.92
1842 1992 7.043961 TGCACTCTTGTAACTATAGGATCAG 57.956 40.000 4.43 0.00 0.00 2.90
1843 1993 6.607600 TGCACTCTTGTAACTATAGGATCAGT 59.392 38.462 4.43 0.00 0.00 3.41
1844 1994 6.920758 GCACTCTTGTAACTATAGGATCAGTG 59.079 42.308 4.43 7.63 0.00 3.66
1845 1995 7.429633 CACTCTTGTAACTATAGGATCAGTGG 58.570 42.308 4.43 0.00 0.00 4.00
1846 1996 6.041069 ACTCTTGTAACTATAGGATCAGTGGC 59.959 42.308 4.43 0.00 0.00 5.01
1847 1997 6.136857 TCTTGTAACTATAGGATCAGTGGCT 58.863 40.000 4.43 0.00 0.00 4.75
1848 1998 6.265649 TCTTGTAACTATAGGATCAGTGGCTC 59.734 42.308 4.43 0.00 0.00 4.70
1849 1999 5.706447 TGTAACTATAGGATCAGTGGCTCT 58.294 41.667 4.43 0.00 0.00 4.09
1850 2000 5.770663 TGTAACTATAGGATCAGTGGCTCTC 59.229 44.000 4.43 0.00 0.00 3.20
1851 2001 4.461450 ACTATAGGATCAGTGGCTCTCA 57.539 45.455 4.43 0.00 0.00 3.27
1852 2002 4.148838 ACTATAGGATCAGTGGCTCTCAC 58.851 47.826 4.43 0.00 46.39 3.51
1859 2009 4.459089 GTGGCTCTCACGGCTCCC 62.459 72.222 0.00 0.00 36.56 4.30
1863 2013 3.775654 CTCTCACGGCTCCCCCAC 61.776 72.222 0.00 0.00 0.00 4.61
1868 2018 4.798682 ACGGCTCCCCCACCCTAG 62.799 72.222 0.00 0.00 0.00 3.02
1952 2102 3.541713 CCGCTAGCCCTCCCTGAC 61.542 72.222 9.66 0.00 0.00 3.51
1953 2103 3.541713 CGCTAGCCCTCCCTGACC 61.542 72.222 9.66 0.00 0.00 4.02
1954 2104 3.164977 GCTAGCCCTCCCTGACCC 61.165 72.222 2.29 0.00 0.00 4.46
1955 2105 2.446802 CTAGCCCTCCCTGACCCC 60.447 72.222 0.00 0.00 0.00 4.95
1956 2106 4.475444 TAGCCCTCCCTGACCCCG 62.475 72.222 0.00 0.00 0.00 5.73
1960 2110 4.715130 CCTCCCTGACCCCGTCCA 62.715 72.222 0.00 0.00 0.00 4.02
1961 2111 3.391382 CTCCCTGACCCCGTCCAC 61.391 72.222 0.00 0.00 0.00 4.02
1964 2114 3.391382 CCTGACCCCGTCCACCTC 61.391 72.222 0.00 0.00 0.00 3.85
1965 2115 3.391382 CTGACCCCGTCCACCTCC 61.391 72.222 0.00 0.00 0.00 4.30
1967 2117 4.716977 GACCCCGTCCACCTCCCT 62.717 72.222 0.00 0.00 0.00 4.20
1968 2118 4.265507 ACCCCGTCCACCTCCCTT 62.266 66.667 0.00 0.00 0.00 3.95
1969 2119 3.400054 CCCCGTCCACCTCCCTTC 61.400 72.222 0.00 0.00 0.00 3.46
1970 2120 3.400054 CCCGTCCACCTCCCTTCC 61.400 72.222 0.00 0.00 0.00 3.46
1971 2121 3.400054 CCGTCCACCTCCCTTCCC 61.400 72.222 0.00 0.00 0.00 3.97
1972 2122 3.400054 CGTCCACCTCCCTTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
1973 2123 3.015753 GTCCACCTCCCTTCCCCC 61.016 72.222 0.00 0.00 0.00 5.40
1997 2147 3.834799 CCTCCCGCTCCACCGTAC 61.835 72.222 0.00 0.00 0.00 3.67
1998 2148 3.834799 CTCCCGCTCCACCGTACC 61.835 72.222 0.00 0.00 0.00 3.34
2026 2176 3.827898 CTCCCCGAGCGAGGTGAC 61.828 72.222 0.00 0.00 0.00 3.67
2063 2213 4.748798 CTCCCCAGCACCTCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
2064 2214 4.741239 TCCCCAGCACCTCCCCTC 62.741 72.222 0.00 0.00 0.00 4.30
2068 2218 4.748798 CAGCACCTCCCCTCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
2069 2219 3.960313 AGCACCTCCCCTCCCCTT 61.960 66.667 0.00 0.00 0.00 3.95
2070 2220 3.412408 GCACCTCCCCTCCCCTTC 61.412 72.222 0.00 0.00 0.00 3.46
2071 2221 2.456840 CACCTCCCCTCCCCTTCT 59.543 66.667 0.00 0.00 0.00 2.85
2469 2619 2.671070 CGTGGCTCCTTGGATGGT 59.329 61.111 0.00 0.00 0.00 3.55
2928 3147 4.704833 TGTTGCTGCCGCCTCTCC 62.705 66.667 0.00 0.00 34.43 3.71
2994 3214 2.443952 TGAGACGGCGATGGGGAT 60.444 61.111 16.62 0.00 0.00 3.85
3160 3383 4.388499 TTCCTGAAGGGCGTCGGC 62.388 66.667 10.88 10.88 38.90 5.54
3347 3570 3.363673 GGGTCTTCATCGTTTTCGTTGAC 60.364 47.826 1.75 0.00 46.87 3.18
3461 3686 4.153475 GCTGTATCGAAGTTGGTTGCTTTA 59.847 41.667 0.00 0.00 0.00 1.85
3472 3697 9.353999 GAAGTTGGTTGCTTTATAATACAAAGG 57.646 33.333 3.08 0.00 34.28 3.11
3529 3757 1.156736 AGCAAGCCATACAACACGAC 58.843 50.000 0.00 0.00 0.00 4.34
3530 3758 0.871722 GCAAGCCATACAACACGACA 59.128 50.000 0.00 0.00 0.00 4.35
3567 3795 2.505819 ACAAGGCTAGATACAAGGGTGG 59.494 50.000 0.00 0.00 0.00 4.61
3571 3799 4.567857 AGGCTAGATACAAGGGTGGTAAT 58.432 43.478 0.00 0.00 0.00 1.89
3573 3801 4.065789 GCTAGATACAAGGGTGGTAATGC 58.934 47.826 0.00 0.00 0.00 3.56
3594 3825 2.032426 CACAACTACACAACCCCGAAAC 59.968 50.000 0.00 0.00 0.00 2.78
3616 3847 2.361119 ACTCGAAGCACACTACACAAGA 59.639 45.455 0.00 0.00 0.00 3.02
3618 3849 3.120792 TCGAAGCACACTACACAAGAAC 58.879 45.455 0.00 0.00 0.00 3.01
3619 3850 2.221055 CGAAGCACACTACACAAGAACC 59.779 50.000 0.00 0.00 0.00 3.62
3642 3875 1.027255 TGGAGTCTTCGGAGCTCTCG 61.027 60.000 14.64 15.31 0.00 4.04
3650 3883 1.021920 TCGGAGCTCTCGACTGTGAG 61.022 60.000 19.22 0.00 38.47 3.51
3658 3891 1.681264 TCTCGACTGTGAGCAAGTCAA 59.319 47.619 4.62 0.00 36.74 3.18
3814 4048 0.810648 TAACCACGACGTCGCCTTAT 59.189 50.000 35.92 20.84 44.43 1.73
3834 4070 3.819877 AAGGAACCGACGCCCACAC 62.820 63.158 0.00 0.00 0.00 3.82
3835 4071 4.612412 GGAACCGACGCCCACACA 62.612 66.667 0.00 0.00 0.00 3.72
3836 4072 2.589442 GAACCGACGCCCACACAA 60.589 61.111 0.00 0.00 0.00 3.33
3864 4108 4.711949 CGTTGGCCTGGCAGAGCT 62.712 66.667 22.05 0.00 0.00 4.09
3880 4125 1.068250 GCTAGAGCAGGCTTACCCG 59.932 63.158 0.00 0.00 41.59 5.28
3923 4168 1.269936 ACGTAGTACAACAGGCCACAC 60.270 52.381 5.01 0.00 41.94 3.82
3935 4180 2.598099 CCACACATGCCTGCCACA 60.598 61.111 0.00 0.00 0.00 4.17
4005 4250 4.912395 GCACCCAGGCAACACCCA 62.912 66.667 0.00 0.00 40.58 4.51
4066 4313 4.123545 GGCCGCCACCCTGGTATT 62.124 66.667 3.91 0.00 40.46 1.89
4076 4323 1.971357 ACCCTGGTATTCATAGCTCCG 59.029 52.381 0.00 0.00 0.00 4.63
4127 5453 5.244626 CCAAGATGACAAAAGAGATGGGTTT 59.755 40.000 0.00 0.00 0.00 3.27
4264 5594 2.942796 TAGCACACCGCCACCAGAG 61.943 63.158 0.00 0.00 44.04 3.35
4320 5650 1.441729 GATCATCCCTCAACGGCGA 59.558 57.895 16.62 0.00 0.00 5.54
4322 5652 1.330655 ATCATCCCTCAACGGCGAGT 61.331 55.000 16.62 0.00 0.00 4.18
4339 5669 2.548920 CGAGTGAAGCTGGGAAAAGTCT 60.549 50.000 0.00 0.00 0.00 3.24
4340 5670 3.481453 GAGTGAAGCTGGGAAAAGTCTT 58.519 45.455 0.00 0.00 0.00 3.01
4341 5671 4.642429 GAGTGAAGCTGGGAAAAGTCTTA 58.358 43.478 0.00 0.00 0.00 2.10
4342 5672 5.248380 AGTGAAGCTGGGAAAAGTCTTAT 57.752 39.130 0.00 0.00 0.00 1.73
4343 5673 6.374417 AGTGAAGCTGGGAAAAGTCTTATA 57.626 37.500 0.00 0.00 0.00 0.98
4344 5674 6.963322 AGTGAAGCTGGGAAAAGTCTTATAT 58.037 36.000 0.00 0.00 0.00 0.86
4345 5675 7.406104 AGTGAAGCTGGGAAAAGTCTTATATT 58.594 34.615 0.00 0.00 0.00 1.28
4346 5676 7.890655 AGTGAAGCTGGGAAAAGTCTTATATTT 59.109 33.333 0.00 0.00 0.00 1.40
4347 5677 9.174166 GTGAAGCTGGGAAAAGTCTTATATTTA 57.826 33.333 0.00 0.00 0.00 1.40
4348 5678 9.396022 TGAAGCTGGGAAAAGTCTTATATTTAG 57.604 33.333 0.00 0.00 0.00 1.85
4349 5679 8.753497 AAGCTGGGAAAAGTCTTATATTTAGG 57.247 34.615 0.00 0.00 0.00 2.69
4350 5680 8.102484 AGCTGGGAAAAGTCTTATATTTAGGA 57.898 34.615 0.00 0.00 0.00 2.94
4351 5681 8.557450 AGCTGGGAAAAGTCTTATATTTAGGAA 58.443 33.333 0.00 0.00 0.00 3.36
4352 5682 9.355916 GCTGGGAAAAGTCTTATATTTAGGAAT 57.644 33.333 0.00 0.00 0.00 3.01
4354 5684 9.640952 TGGGAAAAGTCTTATATTTAGGAATGG 57.359 33.333 0.00 0.00 0.00 3.16
4355 5685 9.862149 GGGAAAAGTCTTATATTTAGGAATGGA 57.138 33.333 0.00 0.00 0.00 3.41
4370 5700 8.783660 TTAGGAATGGAGAGTATAAGATGTGT 57.216 34.615 0.00 0.00 0.00 3.72
4371 5701 7.682787 AGGAATGGAGAGTATAAGATGTGTT 57.317 36.000 0.00 0.00 0.00 3.32
4372 5702 8.783660 AGGAATGGAGAGTATAAGATGTGTTA 57.216 34.615 0.00 0.00 0.00 2.41
4373 5703 8.865090 AGGAATGGAGAGTATAAGATGTGTTAG 58.135 37.037 0.00 0.00 0.00 2.34
4374 5704 8.861086 GGAATGGAGAGTATAAGATGTGTTAGA 58.139 37.037 0.00 0.00 0.00 2.10
4377 5707 8.589701 TGGAGAGTATAAGATGTGTTAGAACA 57.410 34.615 0.00 0.00 36.38 3.18
4378 5708 9.201989 TGGAGAGTATAAGATGTGTTAGAACAT 57.798 33.333 0.00 0.00 43.47 2.71
4391 5721 8.710835 TGTGTTAGAACATCTTATATTTGCGA 57.289 30.769 0.00 0.00 41.59 5.10
4392 5722 9.157104 TGTGTTAGAACATCTTATATTTGCGAA 57.843 29.630 0.00 0.00 41.59 4.70
4393 5723 9.422196 GTGTTAGAACATCTTATATTTGCGAAC 57.578 33.333 0.00 0.00 41.59 3.95
4394 5724 8.325282 TGTTAGAACATCTTATATTTGCGAACG 58.675 33.333 0.00 0.00 33.17 3.95
4395 5725 6.287107 AGAACATCTTATATTTGCGAACGG 57.713 37.500 0.00 0.00 0.00 4.44
4396 5726 6.046593 AGAACATCTTATATTTGCGAACGGA 58.953 36.000 0.00 0.00 0.00 4.69
4397 5727 5.907197 ACATCTTATATTTGCGAACGGAG 57.093 39.130 0.00 0.00 0.00 4.63
4398 5728 4.750098 ACATCTTATATTTGCGAACGGAGG 59.250 41.667 0.00 0.00 0.00 4.30
4399 5729 3.724374 TCTTATATTTGCGAACGGAGGG 58.276 45.455 0.00 0.00 0.00 4.30
4419 5749 4.019141 AGGGAGTATCATAGAGTAGGGACG 60.019 50.000 0.00 0.00 36.25 4.79
4422 5752 5.587043 GGAGTATCATAGAGTAGGGACGATG 59.413 48.000 0.00 0.00 36.25 3.84
4424 5754 6.411376 AGTATCATAGAGTAGGGACGATGAG 58.589 44.000 0.00 0.00 31.70 2.90
4431 5761 2.686915 AGTAGGGACGATGAGTTAACGG 59.313 50.000 0.00 0.00 0.00 4.44
4432 5762 1.843368 AGGGACGATGAGTTAACGGA 58.157 50.000 0.00 0.00 0.00 4.69
4435 5765 3.197116 AGGGACGATGAGTTAACGGATTT 59.803 43.478 0.00 0.00 0.00 2.17
4436 5766 3.937079 GGGACGATGAGTTAACGGATTTT 59.063 43.478 0.00 0.00 0.00 1.82
4560 5890 7.792374 ATTAGCAATCTAAATGATGTCGTGT 57.208 32.000 0.00 0.00 38.21 4.49
4574 6304 3.064207 TGTCGTGTCTGATTGCTTTACC 58.936 45.455 0.00 0.00 0.00 2.85
4583 6313 5.412904 GTCTGATTGCTTTACCTACTTTGCT 59.587 40.000 0.00 0.00 0.00 3.91
4603 6333 6.104146 TGCTAGTGTTTGTGGTATGTTCTA 57.896 37.500 0.00 0.00 0.00 2.10
4605 6335 7.842982 TGCTAGTGTTTGTGGTATGTTCTATA 58.157 34.615 0.00 0.00 0.00 1.31
4769 6506 7.227910 GGCATTTTTCATGATTATTGGCAGATT 59.772 33.333 14.06 0.00 0.00 2.40
4788 6525 7.067494 GGCAGATTTAGGTGATTTGTAGATGTT 59.933 37.037 0.00 0.00 0.00 2.71
4939 6676 1.528586 GCTATCGCGTTGATGCTTCAT 59.471 47.619 5.77 0.00 37.99 2.57
5080 6817 7.663081 AGAACTTTTTGAGATCTACAATCTGCA 59.337 33.333 0.00 0.00 35.91 4.41
5553 7295 6.893020 ACTGGTAATCCTGAAGTATTTCCT 57.107 37.500 0.00 0.00 36.65 3.36
5566 7308 9.696917 CTGAAGTATTTCCTTAAATTGCTTGTT 57.303 29.630 0.00 0.00 36.67 2.83
5894 7637 1.838077 GCAGTGGGTATAAGGTGACCT 59.162 52.381 0.00 0.00 35.91 3.85
6040 7784 3.294038 AGCATTGGATAGCAAGCTTCT 57.706 42.857 0.00 0.00 0.00 2.85
6058 7802 9.346725 CAAGCTTCTATTTTTCTTGTTGTATCC 57.653 33.333 0.00 0.00 31.99 2.59
6091 7835 8.720586 GCAAATTTTGTGTTTAAATTCACGTTC 58.279 29.630 10.65 0.00 34.91 3.95
6111 7855 9.194716 CACGTTCTACATGTAAATAACAATTCG 57.805 33.333 18.26 10.69 42.70 3.34
6160 7929 4.745125 GTCTCTTCAACAGATTGTTCACGA 59.255 41.667 0.00 0.00 38.77 4.35
6165 7934 5.530519 TCAACAGATTGTTCACGATAAGC 57.469 39.130 0.00 0.00 38.77 3.09
6191 7960 7.148423 CGATTCATGTGTTTCACTATGGAGAAA 60.148 37.037 0.00 0.00 35.11 2.52
6308 8077 2.671963 GACAAACCCGGTCCCTGC 60.672 66.667 0.00 0.00 0.00 4.85
6695 8464 7.787904 TCATACACTTATCTAGCCCCTCTAAAA 59.212 37.037 0.00 0.00 0.00 1.52
6705 8474 7.354312 TCTAGCCCCTCTAAAATTTGCTTTAT 58.646 34.615 2.71 0.00 0.00 1.40
6719 8488 0.737219 CTTTATGCTCTGCCACTGCC 59.263 55.000 0.00 0.00 36.33 4.85
6741 8510 1.523758 CACCTAAGCAGTTGTGACCC 58.476 55.000 0.00 0.00 0.00 4.46
6766 8535 5.581085 AGAGGAACAAAGTCGTATGTAATGC 59.419 40.000 0.00 0.00 0.00 3.56
6817 8586 2.807967 TCTGATTGCAGTTCAGAAACCG 59.192 45.455 22.23 3.92 44.94 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.600470 TTTAAGTCACACCGAACCGT 57.400 45.000 0.00 0.00 0.00 4.83
3 4 3.122948 CAGATTTAAGTCACACCGAACCG 59.877 47.826 0.44 0.00 0.00 4.44
5 6 4.151867 GTCCAGATTTAAGTCACACCGAAC 59.848 45.833 0.44 0.00 0.00 3.95
6 7 4.202274 TGTCCAGATTTAAGTCACACCGAA 60.202 41.667 0.44 0.00 0.00 4.30
7 8 3.322541 TGTCCAGATTTAAGTCACACCGA 59.677 43.478 0.44 0.00 0.00 4.69
8 9 3.659786 TGTCCAGATTTAAGTCACACCG 58.340 45.455 0.44 0.00 0.00 4.94
9 10 3.437049 GCTGTCCAGATTTAAGTCACACC 59.563 47.826 0.44 0.00 0.00 4.16
10 11 3.123621 CGCTGTCCAGATTTAAGTCACAC 59.876 47.826 0.44 0.00 0.00 3.82
11 12 3.325870 CGCTGTCCAGATTTAAGTCACA 58.674 45.455 0.44 0.00 0.00 3.58
12 13 2.673368 CCGCTGTCCAGATTTAAGTCAC 59.327 50.000 0.44 0.00 0.00 3.67
13 14 2.354704 CCCGCTGTCCAGATTTAAGTCA 60.355 50.000 0.44 0.00 0.00 3.41
14 15 2.280628 CCCGCTGTCCAGATTTAAGTC 58.719 52.381 0.00 0.00 0.00 3.01
15 16 1.628846 ACCCGCTGTCCAGATTTAAGT 59.371 47.619 0.00 0.00 0.00 2.24
16 17 2.280628 GACCCGCTGTCCAGATTTAAG 58.719 52.381 0.00 0.00 38.09 1.85
17 18 1.626321 TGACCCGCTGTCCAGATTTAA 59.374 47.619 0.00 0.00 43.78 1.52
18 19 1.207089 CTGACCCGCTGTCCAGATTTA 59.793 52.381 0.00 0.00 43.78 1.40
19 20 0.036010 CTGACCCGCTGTCCAGATTT 60.036 55.000 0.00 0.00 43.78 2.17
20 21 1.599047 CTGACCCGCTGTCCAGATT 59.401 57.895 0.00 0.00 43.78 2.40
21 22 2.362369 CCTGACCCGCTGTCCAGAT 61.362 63.158 0.00 0.00 43.78 2.90
22 23 2.997315 CCTGACCCGCTGTCCAGA 60.997 66.667 0.00 0.00 43.78 3.86
23 24 4.087892 CCCTGACCCGCTGTCCAG 62.088 72.222 1.37 0.00 43.78 3.86
24 25 4.631740 TCCCTGACCCGCTGTCCA 62.632 66.667 1.37 0.00 43.78 4.02
25 26 3.775654 CTCCCTGACCCGCTGTCC 61.776 72.222 1.37 0.00 43.78 4.02
26 27 4.459089 GCTCCCTGACCCGCTGTC 62.459 72.222 0.00 0.00 44.72 3.51
28 29 3.710722 AAGCTCCCTGACCCGCTG 61.711 66.667 0.00 0.00 32.22 5.18
29 30 3.710722 CAAGCTCCCTGACCCGCT 61.711 66.667 0.00 0.00 0.00 5.52
30 31 4.785453 CCAAGCTCCCTGACCCGC 62.785 72.222 0.00 0.00 0.00 6.13
31 32 4.101448 CCCAAGCTCCCTGACCCG 62.101 72.222 0.00 0.00 0.00 5.28
32 33 2.936032 ACCCAAGCTCCCTGACCC 60.936 66.667 0.00 0.00 0.00 4.46
33 34 1.904990 GAGACCCAAGCTCCCTGACC 61.905 65.000 0.00 0.00 0.00 4.02
34 35 1.599576 GAGACCCAAGCTCCCTGAC 59.400 63.158 0.00 0.00 0.00 3.51
35 36 1.984570 CGAGACCCAAGCTCCCTGA 60.985 63.158 0.00 0.00 0.00 3.86
36 37 2.581354 CGAGACCCAAGCTCCCTG 59.419 66.667 0.00 0.00 0.00 4.45
37 38 3.394836 GCGAGACCCAAGCTCCCT 61.395 66.667 0.00 0.00 0.00 4.20
38 39 4.821589 CGCGAGACCCAAGCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
39 40 4.821589 CCGCGAGACCCAAGCTCC 62.822 72.222 8.23 0.00 0.00 4.70
55 56 4.537433 AGCAATCGAGAGCCGGCC 62.537 66.667 26.15 15.34 39.14 6.13
56 57 2.964389 GAGCAATCGAGAGCCGGC 60.964 66.667 21.89 21.89 39.14 6.13
57 58 2.656651 CGAGCAATCGAGAGCCGG 60.657 66.667 0.00 0.00 39.14 6.13
58 59 3.326210 GCGAGCAATCGAGAGCCG 61.326 66.667 8.11 11.62 40.25 5.52
59 60 2.202797 TGCGAGCAATCGAGAGCC 60.203 61.111 8.11 0.55 34.64 4.70
60 61 2.854214 CGTGCGAGCAATCGAGAGC 61.854 63.158 0.00 3.85 34.64 4.09
61 62 1.467556 GACGTGCGAGCAATCGAGAG 61.468 60.000 13.61 0.00 34.64 3.20
62 63 1.514228 GACGTGCGAGCAATCGAGA 60.514 57.895 13.61 0.00 34.64 4.04
63 64 2.508891 GGACGTGCGAGCAATCGAG 61.509 63.158 13.61 0.94 34.64 4.04
64 65 2.506217 GGACGTGCGAGCAATCGA 60.506 61.111 13.61 0.00 34.64 3.59
65 66 3.902063 CGGACGTGCGAGCAATCG 61.902 66.667 26.18 2.81 0.00 3.34
66 67 1.074319 TAACGGACGTGCGAGCAATC 61.074 55.000 36.06 0.63 0.00 2.67
67 68 0.459585 ATAACGGACGTGCGAGCAAT 60.460 50.000 36.06 18.51 0.00 3.56
68 69 0.170784 TATAACGGACGTGCGAGCAA 59.829 50.000 36.06 17.10 0.00 3.91
69 70 0.382873 ATATAACGGACGTGCGAGCA 59.617 50.000 36.06 19.28 0.00 4.26
70 71 2.320805 TATATAACGGACGTGCGAGC 57.679 50.000 36.06 0.00 0.00 5.03
71 72 3.818387 ACATATATAACGGACGTGCGAG 58.182 45.455 36.06 15.36 0.00 5.03
72 73 3.902261 ACATATATAACGGACGTGCGA 57.098 42.857 36.06 15.41 0.00 5.10
73 74 3.541130 GCTACATATATAACGGACGTGCG 59.459 47.826 28.33 28.33 0.00 5.34
74 75 3.855950 GGCTACATATATAACGGACGTGC 59.144 47.826 0.00 0.00 0.00 5.34
75 76 4.093514 CGGCTACATATATAACGGACGTG 58.906 47.826 0.00 0.00 0.00 4.49
76 77 4.002982 TCGGCTACATATATAACGGACGT 58.997 43.478 0.00 0.00 0.00 4.34
77 78 4.604843 TCGGCTACATATATAACGGACG 57.395 45.455 0.00 0.00 0.00 4.79
78 79 5.007039 TCGATCGGCTACATATATAACGGAC 59.993 44.000 16.41 0.00 0.00 4.79
79 80 5.118286 TCGATCGGCTACATATATAACGGA 58.882 41.667 16.41 0.00 0.00 4.69
80 81 5.413969 TCGATCGGCTACATATATAACGG 57.586 43.478 16.41 0.00 0.00 4.44
81 82 6.656003 TGATCGATCGGCTACATATATAACG 58.344 40.000 20.03 0.00 0.00 3.18
82 83 8.343366 TCTTGATCGATCGGCTACATATATAAC 58.657 37.037 20.03 0.00 0.00 1.89
83 84 8.446599 TCTTGATCGATCGGCTACATATATAA 57.553 34.615 20.03 3.71 0.00 0.98
84 85 8.622948 ATCTTGATCGATCGGCTACATATATA 57.377 34.615 20.03 0.00 0.00 0.86
96 97 3.650070 TGGAGGAATCTTGATCGATCG 57.350 47.619 20.03 9.36 0.00 3.69
153 154 7.626890 AGATGGGAGAAGAATATGTATAGGCAT 59.373 37.037 0.00 0.00 0.00 4.40
197 235 5.356882 TCTGCTTTATTGTCAGGAAAACG 57.643 39.130 0.00 0.00 0.00 3.60
222 260 2.721231 TGCGTTGGAGCAAAGTGC 59.279 55.556 0.00 0.00 45.06 4.40
246 319 5.968387 AGACGAATCCGAACATGTAAATC 57.032 39.130 0.00 0.00 39.50 2.17
247 320 6.594159 AGAAAGACGAATCCGAACATGTAAAT 59.406 34.615 0.00 0.00 39.50 1.40
248 321 5.929992 AGAAAGACGAATCCGAACATGTAAA 59.070 36.000 0.00 0.00 39.50 2.01
249 322 5.347635 CAGAAAGACGAATCCGAACATGTAA 59.652 40.000 0.00 0.00 39.50 2.41
250 323 4.862574 CAGAAAGACGAATCCGAACATGTA 59.137 41.667 0.00 0.00 39.50 2.29
261 334 2.808543 GTGCAGGTTCAGAAAGACGAAT 59.191 45.455 0.00 0.00 0.00 3.34
332 406 2.837532 AAATGTGTCCCCATTTGTGC 57.162 45.000 0.00 0.00 42.04 4.57
388 462 2.203337 AGCAGGCGTCCAAGCAAA 60.203 55.556 12.89 0.00 39.27 3.68
399 473 5.415077 AGAATATATGCAAGAATCAGCAGGC 59.585 40.000 6.55 0.00 44.94 4.85
437 512 2.301870 TCACACCCTACTGTAGCCTTTG 59.698 50.000 9.35 5.69 0.00 2.77
466 543 0.655733 AAACTGTTGGTCGTTGCTCG 59.344 50.000 0.00 0.00 41.41 5.03
493 570 1.484240 AGATAAGACCTGGAGCTGCAC 59.516 52.381 2.72 0.00 0.00 4.57
494 571 1.871418 AGATAAGACCTGGAGCTGCA 58.129 50.000 7.99 7.99 0.00 4.41
495 572 2.998316 AAGATAAGACCTGGAGCTGC 57.002 50.000 0.00 0.00 0.00 5.25
565 659 4.938226 TGTCAATGAACGTGTGGCATATAA 59.062 37.500 0.00 0.00 0.00 0.98
765 859 8.431910 AGTTTGAACTACCTACCTCAATTAGA 57.568 34.615 0.00 0.00 37.52 2.10
868 962 2.286772 ACAGTTCGCATTTTGTTCGTCC 60.287 45.455 0.00 0.00 0.00 4.79
882 980 3.440522 TGTCTAGATCTGTGGACAGTTCG 59.559 47.826 17.84 0.00 43.75 3.95
900 998 7.627298 AAGAGCGGTCGTTATATATATGTCT 57.373 36.000 9.28 0.00 0.00 3.41
1078 1220 6.112734 ACATAAATACAGAACTCAATGCCGA 58.887 36.000 0.00 0.00 0.00 5.54
1127 1273 5.858381 ACGGATCATTCAGTAACATGCTAT 58.142 37.500 0.00 0.00 0.00 2.97
1148 1294 2.543430 CCTGCAACCAATTTTCCAAACG 59.457 45.455 0.00 0.00 0.00 3.60
1152 1298 7.673641 ATATATTCCTGCAACCAATTTTCCA 57.326 32.000 0.00 0.00 0.00 3.53
1154 1300 9.598517 TGAAATATATTCCTGCAACCAATTTTC 57.401 29.630 0.00 0.00 0.00 2.29
1189 1335 3.065371 GGCATGTAAAGAGGTTCAATCCG 59.935 47.826 0.00 0.00 0.00 4.18
1218 1364 0.897863 TGGTTCGCCATTTGAAGGGG 60.898 55.000 0.00 0.00 43.56 4.79
1229 1375 1.131315 GATGAGAGCTTTTGGTTCGCC 59.869 52.381 0.00 0.00 37.92 5.54
1230 1376 2.079925 AGATGAGAGCTTTTGGTTCGC 58.920 47.619 0.00 0.00 0.00 4.70
1318 1464 5.048434 ACTGCAGAGTTCTATTTTTCTTGGC 60.048 40.000 23.35 0.00 0.00 4.52
1323 1469 7.168135 CCAAAACACTGCAGAGTTCTATTTTTC 59.832 37.037 26.44 0.00 0.00 2.29
1325 1471 6.461509 CCCAAAACACTGCAGAGTTCTATTTT 60.462 38.462 26.44 15.45 0.00 1.82
1326 1472 5.010012 CCCAAAACACTGCAGAGTTCTATTT 59.990 40.000 26.44 15.77 0.00 1.40
1349 1495 6.420008 CAGGCGTACAGTTAAACTATATGACC 59.580 42.308 0.00 0.00 21.70 4.02
1370 1516 6.759497 ACAAATATAGGAAGAACAACAGGC 57.241 37.500 0.00 0.00 0.00 4.85
1383 1529 7.805163 TCCATGGCATATCCTACAAATATAGG 58.195 38.462 6.96 0.00 42.91 2.57
1444 1590 3.860754 GCACAGGGACATAAAAGCCAAAC 60.861 47.826 0.00 0.00 0.00 2.93
1459 1605 7.681939 TTTTTATACTAAGTTGAGCACAGGG 57.318 36.000 0.00 0.00 0.00 4.45
1527 1676 6.149973 CGCATGGGTATATGATCACATCTTTT 59.850 38.462 0.00 0.00 37.87 2.27
1528 1677 5.645067 CGCATGGGTATATGATCACATCTTT 59.355 40.000 0.00 0.00 37.87 2.52
1529 1678 5.181009 CGCATGGGTATATGATCACATCTT 58.819 41.667 0.00 0.00 37.87 2.40
1530 1679 4.383444 CCGCATGGGTATATGATCACATCT 60.383 45.833 9.14 0.00 37.87 2.90
1531 1680 3.873361 CCGCATGGGTATATGATCACATC 59.127 47.826 9.14 0.00 37.87 3.06
1573 1723 4.817464 TGGTTGCTCTTCTTTAGCGTTAAA 59.183 37.500 4.34 4.34 43.11 1.52
1578 1728 3.896648 TTTGGTTGCTCTTCTTTAGCG 57.103 42.857 0.00 0.00 43.11 4.26
1590 1740 3.021695 GAGGGGGTACTTATTTGGTTGC 58.978 50.000 0.00 0.00 0.00 4.17
1597 1747 3.457836 AGAAACGGAGGGGGTACTTATT 58.542 45.455 0.00 0.00 0.00 1.40
1601 1751 2.629017 TTAGAAACGGAGGGGGTACT 57.371 50.000 0.00 0.00 0.00 2.73
1602 1752 3.920231 ATTTAGAAACGGAGGGGGTAC 57.080 47.619 0.00 0.00 0.00 3.34
1603 1753 6.239686 GCTTATATTTAGAAACGGAGGGGGTA 60.240 42.308 0.00 0.00 0.00 3.69
1604 1754 5.455755 GCTTATATTTAGAAACGGAGGGGGT 60.456 44.000 0.00 0.00 0.00 4.95
1605 1755 5.001874 GCTTATATTTAGAAACGGAGGGGG 58.998 45.833 0.00 0.00 0.00 5.40
1606 1756 5.001874 GGCTTATATTTAGAAACGGAGGGG 58.998 45.833 0.00 0.00 0.00 4.79
1607 1757 5.866207 AGGCTTATATTTAGAAACGGAGGG 58.134 41.667 0.00 0.00 0.00 4.30
1608 1758 7.803279 AAAGGCTTATATTTAGAAACGGAGG 57.197 36.000 0.00 0.00 0.00 4.30
1635 1785 8.032451 CCGTATGTGGTCCTTATTGAAATTTTT 58.968 33.333 0.00 0.00 0.00 1.94
1636 1786 7.394923 TCCGTATGTGGTCCTTATTGAAATTTT 59.605 33.333 0.00 0.00 0.00 1.82
1637 1787 6.887545 TCCGTATGTGGTCCTTATTGAAATTT 59.112 34.615 0.00 0.00 0.00 1.82
1638 1788 6.419791 TCCGTATGTGGTCCTTATTGAAATT 58.580 36.000 0.00 0.00 0.00 1.82
1639 1789 5.996644 TCCGTATGTGGTCCTTATTGAAAT 58.003 37.500 0.00 0.00 0.00 2.17
1640 1790 5.423704 TCCGTATGTGGTCCTTATTGAAA 57.576 39.130 0.00 0.00 0.00 2.69
1641 1791 5.104693 ACATCCGTATGTGGTCCTTATTGAA 60.105 40.000 0.00 0.00 44.79 2.69
1642 1792 4.407621 ACATCCGTATGTGGTCCTTATTGA 59.592 41.667 0.00 0.00 44.79 2.57
1643 1793 4.703897 ACATCCGTATGTGGTCCTTATTG 58.296 43.478 0.00 0.00 44.79 1.90
1644 1794 6.681729 ATACATCCGTATGTGGTCCTTATT 57.318 37.500 3.56 0.00 45.99 1.40
1645 1795 7.973048 ATATACATCCGTATGTGGTCCTTAT 57.027 36.000 3.56 0.00 45.99 1.73
1646 1796 8.330993 TCTATATACATCCGTATGTGGTCCTTA 58.669 37.037 3.56 0.00 45.99 2.69
1647 1797 7.179966 TCTATATACATCCGTATGTGGTCCTT 58.820 38.462 3.56 0.00 45.99 3.36
1648 1798 6.728411 TCTATATACATCCGTATGTGGTCCT 58.272 40.000 3.56 0.00 45.99 3.85
1649 1799 7.122353 ACTTCTATATACATCCGTATGTGGTCC 59.878 40.741 3.56 0.00 45.99 4.46
1650 1800 8.053026 ACTTCTATATACATCCGTATGTGGTC 57.947 38.462 3.56 0.00 45.99 4.02
1651 1801 9.696572 ATACTTCTATATACATCCGTATGTGGT 57.303 33.333 3.56 0.00 45.99 4.16
1678 1828 8.721478 GCAAAGTGAATGAATCTACACTCTAAA 58.279 33.333 0.00 0.00 41.73 1.85
1679 1829 8.097038 AGCAAAGTGAATGAATCTACACTCTAA 58.903 33.333 0.00 0.00 41.73 2.10
1680 1830 7.615403 AGCAAAGTGAATGAATCTACACTCTA 58.385 34.615 0.00 0.00 41.73 2.43
1681 1831 6.471146 AGCAAAGTGAATGAATCTACACTCT 58.529 36.000 0.00 0.00 41.73 3.24
1682 1832 6.183360 GGAGCAAAGTGAATGAATCTACACTC 60.183 42.308 0.00 0.00 41.73 3.51
1683 1833 5.645497 GGAGCAAAGTGAATGAATCTACACT 59.355 40.000 0.00 0.00 43.92 3.55
1684 1834 5.446473 CGGAGCAAAGTGAATGAATCTACAC 60.446 44.000 0.00 0.00 0.00 2.90
1685 1835 4.631377 CGGAGCAAAGTGAATGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1686 1836 4.631813 ACGGAGCAAAGTGAATGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1687 1837 4.832248 ACGGAGCAAAGTGAATGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1688 1838 3.679389 ACGGAGCAAAGTGAATGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1689 1839 5.065218 ACATACGGAGCAAAGTGAATGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1690 1840 4.943705 ACATACGGAGCAAAGTGAATGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1691 1841 4.323417 ACATACGGAGCAAAGTGAATGAA 58.677 39.130 0.00 0.00 0.00 2.57
1692 1842 3.937814 ACATACGGAGCAAAGTGAATGA 58.062 40.909 0.00 0.00 0.00 2.57
1693 1843 4.870426 ACTACATACGGAGCAAAGTGAATG 59.130 41.667 0.00 0.00 0.00 2.67
1694 1844 5.086104 ACTACATACGGAGCAAAGTGAAT 57.914 39.130 0.00 0.00 0.00 2.57
1695 1845 4.491676 GACTACATACGGAGCAAAGTGAA 58.508 43.478 0.00 0.00 0.00 3.18
1696 1846 3.119245 GGACTACATACGGAGCAAAGTGA 60.119 47.826 0.00 0.00 0.00 3.41
1697 1847 3.187700 GGACTACATACGGAGCAAAGTG 58.812 50.000 0.00 0.00 0.00 3.16
1698 1848 2.829720 TGGACTACATACGGAGCAAAGT 59.170 45.455 0.00 0.00 0.00 2.66
1699 1849 3.520290 TGGACTACATACGGAGCAAAG 57.480 47.619 0.00 0.00 0.00 2.77
1700 1850 4.188462 CAATGGACTACATACGGAGCAAA 58.812 43.478 0.00 0.00 39.40 3.68
1701 1851 3.431626 CCAATGGACTACATACGGAGCAA 60.432 47.826 0.00 0.00 39.40 3.91
1702 1852 2.102420 CCAATGGACTACATACGGAGCA 59.898 50.000 0.00 0.00 39.40 4.26
1703 1853 2.364324 TCCAATGGACTACATACGGAGC 59.636 50.000 0.00 0.00 39.40 4.70
1704 1854 4.665833 TTCCAATGGACTACATACGGAG 57.334 45.455 0.00 0.00 40.44 4.63
1705 1855 4.899457 AGATTCCAATGGACTACATACGGA 59.101 41.667 0.00 0.00 39.40 4.69
1706 1856 5.011125 AGAGATTCCAATGGACTACATACGG 59.989 44.000 0.00 0.00 39.40 4.02
1707 1857 6.090483 AGAGATTCCAATGGACTACATACG 57.910 41.667 0.00 0.00 39.40 3.06
1708 1858 9.832445 TTTTAGAGATTCCAATGGACTACATAC 57.168 33.333 0.00 0.00 39.40 2.39
1710 1860 9.401058 CTTTTTAGAGATTCCAATGGACTACAT 57.599 33.333 0.00 0.00 43.07 2.29
1711 1861 7.829211 CCTTTTTAGAGATTCCAATGGACTACA 59.171 37.037 0.00 0.00 0.00 2.74
1712 1862 7.201741 GCCTTTTTAGAGATTCCAATGGACTAC 60.202 40.741 0.00 0.00 0.00 2.73
1713 1863 6.828785 GCCTTTTTAGAGATTCCAATGGACTA 59.171 38.462 0.00 0.00 0.00 2.59
1714 1864 5.654209 GCCTTTTTAGAGATTCCAATGGACT 59.346 40.000 0.00 0.00 0.00 3.85
1715 1865 5.654209 AGCCTTTTTAGAGATTCCAATGGAC 59.346 40.000 0.00 0.00 0.00 4.02
1716 1866 5.831103 AGCCTTTTTAGAGATTCCAATGGA 58.169 37.500 0.00 0.00 0.00 3.41
1717 1867 6.535963 AAGCCTTTTTAGAGATTCCAATGG 57.464 37.500 0.00 0.00 0.00 3.16
1722 1872 9.684448 GCAAATATAAGCCTTTTTAGAGATTCC 57.316 33.333 0.00 0.00 0.00 3.01
1758 1908 3.119101 ACATATATAAAGCGGGGCGAGAG 60.119 47.826 0.00 0.00 0.00 3.20
1759 1909 2.829720 ACATATATAAAGCGGGGCGAGA 59.170 45.455 0.00 0.00 0.00 4.04
1760 1910 3.247006 ACATATATAAAGCGGGGCGAG 57.753 47.619 0.00 0.00 0.00 5.03
1761 1911 6.468333 TTATACATATATAAAGCGGGGCGA 57.532 37.500 0.00 0.00 31.56 5.54
1762 1912 7.173863 CTTTATACATATATAAAGCGGGGCG 57.826 40.000 9.90 0.00 46.69 6.13
1776 1926 9.101655 CGGATCATGATCATTGCTTTATACATA 57.898 33.333 31.49 0.00 39.54 2.29
1777 1927 7.825761 TCGGATCATGATCATTGCTTTATACAT 59.174 33.333 31.49 0.00 39.54 2.29
1778 1928 7.160726 TCGGATCATGATCATTGCTTTATACA 58.839 34.615 31.49 5.17 39.54 2.29
1779 1929 7.601073 TCGGATCATGATCATTGCTTTATAC 57.399 36.000 31.49 12.53 39.54 1.47
1780 1930 6.314648 GCTCGGATCATGATCATTGCTTTATA 59.685 38.462 31.49 7.84 39.54 0.98
1781 1931 5.123502 GCTCGGATCATGATCATTGCTTTAT 59.876 40.000 31.49 0.00 39.54 1.40
1782 1932 4.453478 GCTCGGATCATGATCATTGCTTTA 59.547 41.667 31.49 10.42 39.54 1.85
1783 1933 3.252701 GCTCGGATCATGATCATTGCTTT 59.747 43.478 31.49 0.00 39.54 3.51
1784 1934 2.812591 GCTCGGATCATGATCATTGCTT 59.187 45.455 31.49 0.00 39.54 3.91
1785 1935 2.038689 AGCTCGGATCATGATCATTGCT 59.961 45.455 31.49 29.27 39.54 3.91
1786 1936 2.424557 AGCTCGGATCATGATCATTGC 58.575 47.619 31.49 27.95 39.54 3.56
1787 1937 3.365064 GCAAGCTCGGATCATGATCATTG 60.365 47.826 31.49 25.13 39.54 2.82
1788 1938 2.812591 GCAAGCTCGGATCATGATCATT 59.187 45.455 31.49 17.03 39.54 2.57
1789 1939 2.424557 GCAAGCTCGGATCATGATCAT 58.575 47.619 31.49 1.18 39.54 2.45
1790 1940 1.541889 GGCAAGCTCGGATCATGATCA 60.542 52.381 31.49 15.20 39.54 2.92
1791 1941 1.155042 GGCAAGCTCGGATCATGATC 58.845 55.000 24.90 24.90 37.11 2.92
1792 1942 0.471191 TGGCAAGCTCGGATCATGAT 59.529 50.000 8.25 8.25 0.00 2.45
1793 1943 0.462581 GTGGCAAGCTCGGATCATGA 60.463 55.000 0.00 0.00 0.00 3.07
1794 1944 0.745486 TGTGGCAAGCTCGGATCATG 60.745 55.000 0.00 0.00 0.00 3.07
1795 1945 0.182061 ATGTGGCAAGCTCGGATCAT 59.818 50.000 0.00 0.00 0.00 2.45
1796 1946 0.745486 CATGTGGCAAGCTCGGATCA 60.745 55.000 0.00 0.00 0.00 2.92
1797 1947 2.020131 CATGTGGCAAGCTCGGATC 58.980 57.895 0.00 0.00 0.00 3.36
1798 1948 2.117156 GCATGTGGCAAGCTCGGAT 61.117 57.895 0.00 0.00 43.97 4.18
1799 1949 2.747460 GCATGTGGCAAGCTCGGA 60.747 61.111 0.00 0.00 43.97 4.55
1808 1958 0.388134 CAAGAGTGCAAGCATGTGGC 60.388 55.000 0.00 0.00 45.30 5.01
1809 1959 0.956633 ACAAGAGTGCAAGCATGTGG 59.043 50.000 0.00 0.00 0.00 4.17
1810 1960 3.251729 AGTTACAAGAGTGCAAGCATGTG 59.748 43.478 8.76 3.40 0.00 3.21
1811 1961 3.480470 AGTTACAAGAGTGCAAGCATGT 58.520 40.909 0.00 1.03 0.00 3.21
1812 1962 5.808042 ATAGTTACAAGAGTGCAAGCATG 57.192 39.130 0.00 0.00 0.00 4.06
1813 1963 6.051717 CCTATAGTTACAAGAGTGCAAGCAT 58.948 40.000 0.00 0.00 0.00 3.79
1814 1964 5.186992 TCCTATAGTTACAAGAGTGCAAGCA 59.813 40.000 0.00 0.00 0.00 3.91
1815 1965 5.661458 TCCTATAGTTACAAGAGTGCAAGC 58.339 41.667 0.00 0.00 0.00 4.01
1816 1966 7.492524 TGATCCTATAGTTACAAGAGTGCAAG 58.507 38.462 0.00 0.00 0.00 4.01
1817 1967 7.124298 ACTGATCCTATAGTTACAAGAGTGCAA 59.876 37.037 0.00 0.00 0.00 4.08
1818 1968 6.607600 ACTGATCCTATAGTTACAAGAGTGCA 59.392 38.462 0.00 0.00 0.00 4.57
1819 1969 6.920758 CACTGATCCTATAGTTACAAGAGTGC 59.079 42.308 0.00 0.00 0.00 4.40
1820 1970 7.429633 CCACTGATCCTATAGTTACAAGAGTG 58.570 42.308 0.00 0.00 0.00 3.51
1821 1971 6.041069 GCCACTGATCCTATAGTTACAAGAGT 59.959 42.308 0.00 0.00 0.00 3.24
1822 1972 6.266558 AGCCACTGATCCTATAGTTACAAGAG 59.733 42.308 0.00 0.00 0.00 2.85
1823 1973 6.136857 AGCCACTGATCCTATAGTTACAAGA 58.863 40.000 0.00 0.00 0.00 3.02
1824 1974 6.266558 AGAGCCACTGATCCTATAGTTACAAG 59.733 42.308 0.00 0.00 0.00 3.16
1825 1975 6.136857 AGAGCCACTGATCCTATAGTTACAA 58.863 40.000 0.00 0.00 0.00 2.41
1826 1976 5.706447 AGAGCCACTGATCCTATAGTTACA 58.294 41.667 0.00 0.00 0.00 2.41
1827 1977 5.770663 TGAGAGCCACTGATCCTATAGTTAC 59.229 44.000 0.00 0.00 0.00 2.50
1828 1978 5.770663 GTGAGAGCCACTGATCCTATAGTTA 59.229 44.000 0.00 0.00 42.44 2.24
1829 1979 4.586841 GTGAGAGCCACTGATCCTATAGTT 59.413 45.833 0.00 0.00 42.44 2.24
1830 1980 4.148838 GTGAGAGCCACTGATCCTATAGT 58.851 47.826 0.00 0.00 42.44 2.12
1831 1981 3.190327 CGTGAGAGCCACTGATCCTATAG 59.810 52.174 0.00 0.00 43.53 1.31
1832 1982 3.149981 CGTGAGAGCCACTGATCCTATA 58.850 50.000 0.00 0.00 43.53 1.31
1833 1983 1.959985 CGTGAGAGCCACTGATCCTAT 59.040 52.381 0.00 0.00 43.53 2.57
1834 1984 1.393603 CGTGAGAGCCACTGATCCTA 58.606 55.000 0.00 0.00 43.53 2.94
1835 1985 1.326213 CCGTGAGAGCCACTGATCCT 61.326 60.000 0.00 0.00 43.53 3.24
1836 1986 1.142748 CCGTGAGAGCCACTGATCC 59.857 63.158 0.00 0.00 43.53 3.36
1837 1987 1.520342 GCCGTGAGAGCCACTGATC 60.520 63.158 0.00 0.00 43.53 2.92
1838 1988 1.954362 GAGCCGTGAGAGCCACTGAT 61.954 60.000 0.00 0.00 43.53 2.90
1839 1989 2.601666 AGCCGTGAGAGCCACTGA 60.602 61.111 0.00 0.00 43.53 3.41
1840 1990 2.125753 GAGCCGTGAGAGCCACTG 60.126 66.667 0.00 0.00 43.53 3.66
1841 1991 3.386237 GGAGCCGTGAGAGCCACT 61.386 66.667 0.00 0.00 43.53 4.00
1842 1992 4.459089 GGGAGCCGTGAGAGCCAC 62.459 72.222 0.00 0.00 42.30 5.01
1846 1996 3.775654 GTGGGGGAGCCGTGAGAG 61.776 72.222 0.00 0.00 0.00 3.20
1935 2085 3.541713 GTCAGGGAGGGCTAGCGG 61.542 72.222 9.00 0.00 0.00 5.52
1936 2086 3.541713 GGTCAGGGAGGGCTAGCG 61.542 72.222 9.00 0.00 0.00 4.26
1937 2087 3.164977 GGGTCAGGGAGGGCTAGC 61.165 72.222 6.04 6.04 0.00 3.42
1938 2088 2.446802 GGGGTCAGGGAGGGCTAG 60.447 72.222 0.00 0.00 0.00 3.42
1939 2089 4.475444 CGGGGTCAGGGAGGGCTA 62.475 72.222 0.00 0.00 0.00 3.93
1943 2093 4.715130 TGGACGGGGTCAGGGAGG 62.715 72.222 0.00 0.00 33.68 4.30
1944 2094 3.391382 GTGGACGGGGTCAGGGAG 61.391 72.222 0.00 0.00 33.68 4.30
1947 2097 3.391382 GAGGTGGACGGGGTCAGG 61.391 72.222 0.00 0.00 33.68 3.86
1948 2098 3.391382 GGAGGTGGACGGGGTCAG 61.391 72.222 0.00 0.00 33.68 3.51
1950 2100 4.716977 AGGGAGGTGGACGGGGTC 62.717 72.222 0.00 0.00 0.00 4.46
1951 2101 4.265507 AAGGGAGGTGGACGGGGT 62.266 66.667 0.00 0.00 0.00 4.95
1952 2102 3.400054 GAAGGGAGGTGGACGGGG 61.400 72.222 0.00 0.00 0.00 5.73
1953 2103 3.400054 GGAAGGGAGGTGGACGGG 61.400 72.222 0.00 0.00 0.00 5.28
1954 2104 3.400054 GGGAAGGGAGGTGGACGG 61.400 72.222 0.00 0.00 0.00 4.79
1955 2105 3.400054 GGGGAAGGGAGGTGGACG 61.400 72.222 0.00 0.00 0.00 4.79
1956 2106 3.015753 GGGGGAAGGGAGGTGGAC 61.016 72.222 0.00 0.00 0.00 4.02
1980 2130 3.834799 GTACGGTGGAGCGGGAGG 61.835 72.222 3.00 0.00 0.00 4.30
1981 2131 3.834799 GGTACGGTGGAGCGGGAG 61.835 72.222 3.00 0.00 0.00 4.30
2009 2159 3.827898 GTCACCTCGCTCGGGGAG 61.828 72.222 15.97 7.28 37.09 4.30
2046 2196 4.748798 AGGGGAGGTGCTGGGGAG 62.749 72.222 0.00 0.00 0.00 4.30
2047 2197 4.741239 GAGGGGAGGTGCTGGGGA 62.741 72.222 0.00 0.00 0.00 4.81
2051 2201 4.748798 AGGGGAGGGGAGGTGCTG 62.749 72.222 0.00 0.00 0.00 4.41
2052 2202 3.952799 GAAGGGGAGGGGAGGTGCT 62.953 68.421 0.00 0.00 0.00 4.40
2053 2203 3.412408 GAAGGGGAGGGGAGGTGC 61.412 72.222 0.00 0.00 0.00 5.01
2054 2204 2.456840 AGAAGGGGAGGGGAGGTG 59.543 66.667 0.00 0.00 0.00 4.00
2929 3148 1.078848 CAGAGAAGGCAACCGGGAG 60.079 63.158 6.32 0.00 37.17 4.30
3229 3452 3.701604 GAAGGACTGCGACGCCGAT 62.702 63.158 18.69 1.81 38.22 4.18
3347 3570 0.724453 CAAATGCGAACAACGACGGG 60.724 55.000 0.00 0.00 45.77 5.28
3507 3735 2.621055 TCGTGTTGTATGGCTTGCTTTT 59.379 40.909 0.00 0.00 0.00 2.27
3511 3739 0.871722 TGTCGTGTTGTATGGCTTGC 59.128 50.000 0.00 0.00 0.00 4.01
3529 3757 1.226267 GTGTGCGTGTGTTGTGGTG 60.226 57.895 0.00 0.00 0.00 4.17
3530 3758 1.237954 TTGTGTGCGTGTGTTGTGGT 61.238 50.000 0.00 0.00 0.00 4.16
3567 3795 3.057806 GGGGTTGTGTAGTTGTGCATTAC 60.058 47.826 0.00 0.00 0.00 1.89
3571 3799 0.816018 CGGGGTTGTGTAGTTGTGCA 60.816 55.000 0.00 0.00 0.00 4.57
3573 3801 1.956297 TTCGGGGTTGTGTAGTTGTG 58.044 50.000 0.00 0.00 0.00 3.33
3594 3825 2.134201 TGTGTAGTGTGCTTCGAGTG 57.866 50.000 0.00 0.00 0.00 3.51
3616 3847 1.004918 CCGAAGACTCCAAGCGGTT 60.005 57.895 0.00 0.00 37.35 4.44
3618 3849 1.153745 CTCCGAAGACTCCAAGCGG 60.154 63.158 0.00 0.00 43.11 5.52
3619 3850 1.807573 GCTCCGAAGACTCCAAGCG 60.808 63.158 0.00 0.00 0.00 4.68
3628 3861 0.321741 ACAGTCGAGAGCTCCGAAGA 60.322 55.000 23.06 10.49 37.81 2.87
3642 3875 0.233332 GCGTTGACTTGCTCACAGTC 59.767 55.000 0.00 0.00 0.00 3.51
3650 3883 0.161870 GTCTCTTCGCGTTGACTTGC 59.838 55.000 5.77 0.00 0.00 4.01
3652 3885 0.309922 TCGTCTCTTCGCGTTGACTT 59.690 50.000 5.77 0.00 0.00 3.01
3658 3891 1.154450 CGACTTCGTCTCTTCGCGT 60.154 57.895 5.77 0.00 34.11 6.01
3746 3979 4.344104 GGAAACCTTGATCCTTGGATCAA 58.656 43.478 31.22 31.22 45.88 2.57
3814 4048 3.235481 TGGGCGTCGGTTCCTTCA 61.235 61.111 0.00 0.00 0.00 3.02
3850 4092 2.039462 TCTAGCTCTGCCAGGCCA 59.961 61.111 9.64 0.00 0.00 5.36
3880 4125 2.359230 AGGAGAAGTGCTTGCCGC 60.359 61.111 0.00 0.00 39.77 6.53
3923 4168 2.652530 GTTGGTGTGGCAGGCATG 59.347 61.111 0.00 0.00 0.00 4.06
3933 4178 4.922026 GGTCGGTGGCGTTGGTGT 62.922 66.667 0.00 0.00 0.00 4.16
4264 5594 2.190578 CATCGTCCTTGCCTCCCC 59.809 66.667 0.00 0.00 0.00 4.81
4320 5650 3.584733 AAGACTTTTCCCAGCTTCACT 57.415 42.857 0.00 0.00 0.00 3.41
4322 5652 9.396022 CTAAATATAAGACTTTTCCCAGCTTCA 57.604 33.333 0.00 0.00 0.00 3.02
4344 5674 9.213777 ACACATCTTATACTCTCCATTCCTAAA 57.786 33.333 0.00 0.00 0.00 1.85
4345 5675 8.783660 ACACATCTTATACTCTCCATTCCTAA 57.216 34.615 0.00 0.00 0.00 2.69
4346 5676 8.783660 AACACATCTTATACTCTCCATTCCTA 57.216 34.615 0.00 0.00 0.00 2.94
4347 5677 7.682787 AACACATCTTATACTCTCCATTCCT 57.317 36.000 0.00 0.00 0.00 3.36
4348 5678 8.861086 TCTAACACATCTTATACTCTCCATTCC 58.139 37.037 0.00 0.00 0.00 3.01
4351 5681 9.201989 TGTTCTAACACATCTTATACTCTCCAT 57.798 33.333 0.00 0.00 33.17 3.41
4352 5682 8.589701 TGTTCTAACACATCTTATACTCTCCA 57.410 34.615 0.00 0.00 33.17 3.86
4353 5683 9.685828 GATGTTCTAACACATCTTATACTCTCC 57.314 37.037 6.57 0.00 46.64 3.71
4365 5695 9.325198 TCGCAAATATAAGATGTTCTAACACAT 57.675 29.630 0.00 0.00 42.51 3.21
4366 5696 8.710835 TCGCAAATATAAGATGTTCTAACACA 57.289 30.769 0.00 0.00 42.51 3.72
4367 5697 9.422196 GTTCGCAAATATAAGATGTTCTAACAC 57.578 33.333 0.00 0.00 42.51 3.32
4368 5698 8.325282 CGTTCGCAAATATAAGATGTTCTAACA 58.675 33.333 0.00 0.00 44.06 2.41
4369 5699 7.792508 CCGTTCGCAAATATAAGATGTTCTAAC 59.207 37.037 0.00 0.00 0.00 2.34
4370 5700 7.707464 TCCGTTCGCAAATATAAGATGTTCTAA 59.293 33.333 0.00 0.00 0.00 2.10
4371 5701 7.204604 TCCGTTCGCAAATATAAGATGTTCTA 58.795 34.615 0.00 0.00 0.00 2.10
4372 5702 6.046593 TCCGTTCGCAAATATAAGATGTTCT 58.953 36.000 0.00 0.00 0.00 3.01
4373 5703 6.281848 TCCGTTCGCAAATATAAGATGTTC 57.718 37.500 0.00 0.00 0.00 3.18
4374 5704 5.236478 CCTCCGTTCGCAAATATAAGATGTT 59.764 40.000 0.00 0.00 0.00 2.71
4375 5705 4.750098 CCTCCGTTCGCAAATATAAGATGT 59.250 41.667 0.00 0.00 0.00 3.06
4376 5706 4.152402 CCCTCCGTTCGCAAATATAAGATG 59.848 45.833 0.00 0.00 0.00 2.90
4377 5707 4.039973 TCCCTCCGTTCGCAAATATAAGAT 59.960 41.667 0.00 0.00 0.00 2.40
4378 5708 3.385433 TCCCTCCGTTCGCAAATATAAGA 59.615 43.478 0.00 0.00 0.00 2.10
4379 5709 3.724374 TCCCTCCGTTCGCAAATATAAG 58.276 45.455 0.00 0.00 0.00 1.73
4380 5710 3.133362 ACTCCCTCCGTTCGCAAATATAA 59.867 43.478 0.00 0.00 0.00 0.98
4381 5711 2.696707 ACTCCCTCCGTTCGCAAATATA 59.303 45.455 0.00 0.00 0.00 0.86
4382 5712 1.485066 ACTCCCTCCGTTCGCAAATAT 59.515 47.619 0.00 0.00 0.00 1.28
4383 5713 0.899720 ACTCCCTCCGTTCGCAAATA 59.100 50.000 0.00 0.00 0.00 1.40
4384 5714 0.899720 TACTCCCTCCGTTCGCAAAT 59.100 50.000 0.00 0.00 0.00 2.32
4385 5715 0.899720 ATACTCCCTCCGTTCGCAAA 59.100 50.000 0.00 0.00 0.00 3.68
4386 5716 0.458669 GATACTCCCTCCGTTCGCAA 59.541 55.000 0.00 0.00 0.00 4.85
4387 5717 0.681887 TGATACTCCCTCCGTTCGCA 60.682 55.000 0.00 0.00 0.00 5.10
4388 5718 0.674534 ATGATACTCCCTCCGTTCGC 59.325 55.000 0.00 0.00 0.00 4.70
4389 5719 3.409570 TCTATGATACTCCCTCCGTTCG 58.590 50.000 0.00 0.00 0.00 3.95
4390 5720 4.400120 ACTCTATGATACTCCCTCCGTTC 58.600 47.826 0.00 0.00 0.00 3.95
4391 5721 4.456662 ACTCTATGATACTCCCTCCGTT 57.543 45.455 0.00 0.00 0.00 4.44
4392 5722 4.019141 CCTACTCTATGATACTCCCTCCGT 60.019 50.000 0.00 0.00 0.00 4.69
4393 5723 4.519213 CCTACTCTATGATACTCCCTCCG 58.481 52.174 0.00 0.00 0.00 4.63
4394 5724 4.540906 TCCCTACTCTATGATACTCCCTCC 59.459 50.000 0.00 0.00 0.00 4.30
4395 5725 5.503002 GTCCCTACTCTATGATACTCCCTC 58.497 50.000 0.00 0.00 0.00 4.30
4396 5726 4.019141 CGTCCCTACTCTATGATACTCCCT 60.019 50.000 0.00 0.00 0.00 4.20
4397 5727 4.019501 TCGTCCCTACTCTATGATACTCCC 60.020 50.000 0.00 0.00 0.00 4.30
4398 5728 5.163281 TCGTCCCTACTCTATGATACTCC 57.837 47.826 0.00 0.00 0.00 3.85
4399 5729 6.408035 TCATCGTCCCTACTCTATGATACTC 58.592 44.000 0.00 0.00 0.00 2.59
4466 5796 1.508088 CACCGCAAATCCAGCCTTC 59.492 57.895 0.00 0.00 0.00 3.46
4560 5890 5.560724 AGCAAAGTAGGTAAAGCAATCAGA 58.439 37.500 0.00 0.00 0.00 3.27
4574 6304 6.426937 ACATACCACAAACACTAGCAAAGTAG 59.573 38.462 0.00 0.00 35.76 2.57
4722 6459 7.509141 TGCCAGTCATTGTATAAACATATGG 57.491 36.000 7.80 0.00 34.97 2.74
4735 6472 6.978343 AATCATGAAAAATGCCAGTCATTG 57.022 33.333 0.00 0.00 44.23 2.82
4742 6479 5.742063 TGCCAATAATCATGAAAAATGCCA 58.258 33.333 0.00 0.00 0.00 4.92
4830 6567 6.005198 AGGGGAACACGTCATTAAATTTACA 58.995 36.000 0.00 0.00 0.00 2.41
4831 6568 6.149807 TGAGGGGAACACGTCATTAAATTTAC 59.850 38.462 0.00 0.00 31.05 2.01
4837 6574 3.992943 ATGAGGGGAACACGTCATTAA 57.007 42.857 6.45 0.00 41.63 1.40
4840 6577 4.899457 TCTATAATGAGGGGAACACGTCAT 59.101 41.667 6.45 6.45 44.99 3.06
4842 6579 4.583489 TCTCTATAATGAGGGGAACACGTC 59.417 45.833 0.00 0.00 34.98 4.34
4844 6581 5.531122 TTCTCTATAATGAGGGGAACACG 57.469 43.478 0.00 0.00 34.98 4.49
4845 6582 7.125792 TCTTTCTCTATAATGAGGGGAACAC 57.874 40.000 0.00 0.00 34.98 3.32
4939 6676 3.590182 CCCAAAAGGTAGGTTCCTTCCTA 59.410 47.826 15.58 0.00 45.79 2.94
5023 6760 5.261209 ACAAAATGACACTAGCAGCAAAA 57.739 34.783 0.00 0.00 0.00 2.44
5058 6795 6.404074 GGGTGCAGATTGTAGATCTCAAAAAG 60.404 42.308 0.00 0.17 0.00 2.27
5580 7322 6.263617 GGGTTACCTTGTTGTAAAATGTGAGA 59.736 38.462 0.00 0.00 32.81 3.27
6073 7817 7.921787 ACATGTAGAACGTGAATTTAAACACA 58.078 30.769 0.00 1.94 37.29 3.72
6087 7831 7.900864 TGCGAATTGTTATTTACATGTAGAACG 59.099 33.333 5.56 3.60 36.44 3.95
6111 7855 5.660460 CCCCCAATATGAGTAAAGTTTTGC 58.340 41.667 0.00 0.00 0.00 3.68
6117 7886 4.137543 GACAGCCCCCAATATGAGTAAAG 58.862 47.826 0.00 0.00 0.00 1.85
6160 7929 7.254898 CCATAGTGAAACACATGAATCGCTTAT 60.255 37.037 0.00 0.00 41.43 1.73
6165 7934 5.812127 TCTCCATAGTGAAACACATGAATCG 59.188 40.000 0.00 0.00 41.43 3.34
6646 8415 9.664332 ATGACATAGAAAAGATATGGTGATAGC 57.336 33.333 0.00 0.00 35.37 2.97
6678 8447 6.515512 AGCAAATTTTAGAGGGGCTAGATA 57.484 37.500 0.00 0.00 0.00 1.98
6683 8452 5.395657 GCATAAAGCAAATTTTAGAGGGGCT 60.396 40.000 0.00 0.00 44.79 5.19
6695 8464 6.698999 GCAGTGGCAGAGCATAAAGCAAAT 62.699 45.833 6.24 0.00 42.95 2.32
6719 8488 0.400213 TCACAACTGCTTAGGTGGGG 59.600 55.000 0.00 0.00 32.29 4.96
6741 8510 6.455646 GCATTACATACGACTTTGTTCCTCTG 60.456 42.308 0.00 0.00 0.00 3.35
6766 8535 6.037786 TGTGGAACTACCTCTATTGTTCAG 57.962 41.667 0.00 0.00 40.12 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.