Multiple sequence alignment - TraesCS5D01G162500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G162500 chr5D 100.000 4891 0 0 1 4891 253541772 253546662 0.000000e+00 9033.0
1 TraesCS5D01G162500 chr5D 100.000 3418 0 0 5228 8645 253546999 253550416 0.000000e+00 6312.0
2 TraesCS5D01G162500 chr5D 88.121 564 63 4 8083 8645 230014600 230014040 0.000000e+00 667.0
3 TraesCS5D01G162500 chr5D 86.789 598 70 8 8049 8645 484815083 484814494 0.000000e+00 658.0
4 TraesCS5D01G162500 chr5D 88.383 439 47 3 1 437 458530576 458530140 7.690000e-145 525.0
5 TraesCS5D01G162500 chr5B 94.868 3644 115 17 1265 4891 289031777 289028189 0.000000e+00 5627.0
6 TraesCS5D01G162500 chr5B 93.415 2840 127 26 5228 8041 289028156 289025351 0.000000e+00 4154.0
7 TraesCS5D01G162500 chr5B 94.505 1274 59 5 1 1267 289033158 289031889 0.000000e+00 1954.0
8 TraesCS5D01G162500 chr5A 96.274 2872 74 12 509 3373 336456008 336458853 0.000000e+00 4680.0
9 TraesCS5D01G162500 chr5A 94.279 2220 79 29 5228 7412 336460608 336462814 0.000000e+00 3352.0
10 TraesCS5D01G162500 chr5A 95.979 1542 49 6 3355 4891 336459042 336460575 0.000000e+00 2492.0
11 TraesCS5D01G162500 chr5A 93.704 1493 55 10 6470 7960 336461876 336463331 0.000000e+00 2200.0
12 TraesCS5D01G162500 chr5A 88.342 549 55 9 8101 8645 489841899 489841356 0.000000e+00 651.0
13 TraesCS5D01G162500 chr5A 96.226 53 1 1 7993 8044 336463442 336463494 1.550000e-12 86.1
14 TraesCS5D01G162500 chr3D 89.298 598 58 5 8049 8645 137019963 137020555 0.000000e+00 745.0
15 TraesCS5D01G162500 chr3D 87.383 428 47 7 13 437 110586491 110586914 1.300000e-132 484.0
16 TraesCS5D01G162500 chr3D 90.000 100 9 1 4379 4477 575234799 575234898 2.530000e-25 128.0
17 TraesCS5D01G162500 chr2D 88.707 549 56 5 8097 8645 131276168 131276710 0.000000e+00 665.0
18 TraesCS5D01G162500 chr2D 86.788 439 55 2 1 437 603038869 603038432 3.630000e-133 486.0
19 TraesCS5D01G162500 chr4D 87.852 568 65 4 8080 8645 449735657 449736222 0.000000e+00 664.0
20 TraesCS5D01G162500 chr4D 86.265 597 75 7 8049 8645 324234323 324233734 7.320000e-180 641.0
21 TraesCS5D01G162500 chr7D 87.676 568 62 4 8080 8645 594070827 594071388 0.000000e+00 654.0
22 TraesCS5D01G162500 chr7D 87.611 565 66 4 8083 8645 1105587 1105025 0.000000e+00 652.0
23 TraesCS5D01G162500 chr3A 87.906 554 58 6 3800 4351 44807779 44808325 2.030000e-180 643.0
24 TraesCS5D01G162500 chr3A 87.770 556 59 6 3800 4354 289019013 289018466 7.320000e-180 641.0
25 TraesCS5D01G162500 chrUn 87.770 556 59 6 3800 4354 288420446 288419899 7.320000e-180 641.0
26 TraesCS5D01G162500 chr4A 87.726 554 59 6 3800 4351 16552529 16551983 9.460000e-179 638.0
27 TraesCS5D01G162500 chr2A 87.703 553 60 5 3800 4351 57819100 57819645 9.460000e-179 638.0
28 TraesCS5D01G162500 chr1D 87.500 440 47 7 3 437 250734556 250734992 1.300000e-137 501.0
29 TraesCS5D01G162500 chr1D 86.788 439 53 5 1 437 58564338 58563903 1.300000e-132 484.0
30 TraesCS5D01G162500 chr6D 87.104 442 48 7 1 437 328617239 328617676 7.800000e-135 492.0
31 TraesCS5D01G162500 chr6D 86.927 436 48 8 2 432 146943292 146943723 1.690000e-131 481.0
32 TraesCS5D01G162500 chr6B 87.028 424 49 6 1 420 565219012 565218591 2.820000e-129 473.0
33 TraesCS5D01G162500 chr6B 87.329 292 33 4 3614 3904 244812160 244812448 1.800000e-86 331.0
34 TraesCS5D01G162500 chr6A 87.037 324 34 6 4029 4351 79708448 79708764 8.250000e-95 359.0
35 TraesCS5D01G162500 chr4B 87.687 268 25 7 3989 4255 347564239 347563979 1.090000e-78 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G162500 chr5D 253541772 253550416 8644 False 7672.500000 9033 100.000000 1 8645 2 chr5D.!!$F1 8644
1 TraesCS5D01G162500 chr5D 230014040 230014600 560 True 667.000000 667 88.121000 8083 8645 1 chr5D.!!$R1 562
2 TraesCS5D01G162500 chr5D 484814494 484815083 589 True 658.000000 658 86.789000 8049 8645 1 chr5D.!!$R3 596
3 TraesCS5D01G162500 chr5B 289025351 289033158 7807 True 3911.666667 5627 94.262667 1 8041 3 chr5B.!!$R1 8040
4 TraesCS5D01G162500 chr5A 336456008 336463494 7486 False 2562.020000 4680 95.292400 509 8044 5 chr5A.!!$F1 7535
5 TraesCS5D01G162500 chr5A 489841356 489841899 543 True 651.000000 651 88.342000 8101 8645 1 chr5A.!!$R1 544
6 TraesCS5D01G162500 chr3D 137019963 137020555 592 False 745.000000 745 89.298000 8049 8645 1 chr3D.!!$F2 596
7 TraesCS5D01G162500 chr2D 131276168 131276710 542 False 665.000000 665 88.707000 8097 8645 1 chr2D.!!$F1 548
8 TraesCS5D01G162500 chr4D 449735657 449736222 565 False 664.000000 664 87.852000 8080 8645 1 chr4D.!!$F1 565
9 TraesCS5D01G162500 chr4D 324233734 324234323 589 True 641.000000 641 86.265000 8049 8645 1 chr4D.!!$R1 596
10 TraesCS5D01G162500 chr7D 594070827 594071388 561 False 654.000000 654 87.676000 8080 8645 1 chr7D.!!$F1 565
11 TraesCS5D01G162500 chr7D 1105025 1105587 562 True 652.000000 652 87.611000 8083 8645 1 chr7D.!!$R1 562
12 TraesCS5D01G162500 chr3A 44807779 44808325 546 False 643.000000 643 87.906000 3800 4351 1 chr3A.!!$F1 551
13 TraesCS5D01G162500 chr3A 289018466 289019013 547 True 641.000000 641 87.770000 3800 4354 1 chr3A.!!$R1 554
14 TraesCS5D01G162500 chrUn 288419899 288420446 547 True 641.000000 641 87.770000 3800 4354 1 chrUn.!!$R1 554
15 TraesCS5D01G162500 chr4A 16551983 16552529 546 True 638.000000 638 87.726000 3800 4351 1 chr4A.!!$R1 551
16 TraesCS5D01G162500 chr2A 57819100 57819645 545 False 638.000000 638 87.703000 3800 4351 1 chr2A.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 792 0.468029 CACAGCACCAAACCCTTCCT 60.468 55.000 0.00 0.00 0.0 3.36 F
1534 1655 1.529438 TGTTTGTCGCGAAGATTGTCC 59.471 47.619 12.06 0.00 0.0 4.02 F
2659 2789 1.067283 CCCTACTATGATCAGGCTGCG 60.067 57.143 10.34 0.00 0.0 5.18 F
4236 4582 0.037232 GAAACTGAGTGCGCCCTAGT 60.037 55.000 4.18 0.87 0.0 2.57 F
4524 4870 0.671781 CACTGAGCTAGGCACACACC 60.672 60.000 0.00 0.00 0.0 4.16 F
6029 6377 1.140852 TCTGTCACACTCAAACAGGGG 59.859 52.381 2.26 0.00 40.6 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 2482 0.824759 CTTCCTCCAGTCCCCTAACG 59.175 60.0 0.00 0.00 0.00 3.18 R
2708 2838 1.603236 CTCCTGCTTCTCTGGCTCGT 61.603 60.0 0.00 0.00 34.13 4.18 R
4504 4850 0.034059 GTGTGTGCCTAGCTCAGTGT 59.966 55.0 0.00 0.00 32.70 3.55 R
5835 6182 1.198713 TCAGCTAAGAGGCCCTTCAG 58.801 55.0 9.46 7.54 36.34 3.02 R
6288 6636 0.538584 TCTTCATCAGCGGCACAGAT 59.461 50.0 1.45 0.00 0.00 2.90 R
7861 8245 0.035725 TGATCTGCCACAAGAGCTGG 60.036 55.0 0.00 0.00 33.68 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.070134 CAAGGAAGAGGACGTGGTTCA 59.930 52.381 0.00 0.00 0.00 3.18
31 32 2.744202 GACGTGGTTCAAGAAGATGCAT 59.256 45.455 0.00 0.00 0.00 3.96
33 34 2.730090 CGTGGTTCAAGAAGATGCATGC 60.730 50.000 11.82 11.82 0.00 4.06
70 71 2.227626 CGACGATGAGTGATCTATGGCT 59.772 50.000 0.00 0.00 0.00 4.75
104 105 2.430546 TTTTTGTATGCCGGCAAGTG 57.569 45.000 36.33 0.00 0.00 3.16
239 240 4.124910 CGACATTGTATGCCGGCT 57.875 55.556 29.70 15.76 32.29 5.52
262 263 2.270297 GACATGGTGCCGGCATGAAC 62.270 60.000 35.23 22.70 0.00 3.18
273 274 2.032634 GCATGAACTTCGGGCGACA 61.033 57.895 0.00 0.00 0.00 4.35
298 299 2.850439 CCGCTGGCATGATCTATGG 58.150 57.895 0.00 0.00 37.26 2.74
353 354 4.776322 TGGATCGCGGCTGTTGGG 62.776 66.667 6.13 0.00 0.00 4.12
365 366 3.712881 GTTGGGCGCACTGTCGAC 61.713 66.667 12.74 9.11 36.59 4.20
380 381 5.008217 CACTGTCGACCCAAATCTTAAACAA 59.992 40.000 14.12 0.00 0.00 2.83
382 383 4.517453 TGTCGACCCAAATCTTAAACAAGG 59.483 41.667 14.12 0.00 0.00 3.61
387 388 4.587262 ACCCAAATCTTAAACAAGGTGGAC 59.413 41.667 0.00 0.00 0.00 4.02
432 433 2.731027 CGGATAAAAGGCGGACAAAAGC 60.731 50.000 0.00 0.00 0.00 3.51
442 443 3.515286 GACAAAAGCGCCGCGTTGA 62.515 57.895 27.39 0.00 34.33 3.18
453 454 1.359848 CCGCGTTGAAGTTGCTCTAT 58.640 50.000 4.92 0.00 0.00 1.98
620 621 2.262423 ATTAAGATTGGAGCCGGAGC 57.738 50.000 5.05 0.00 40.32 4.70
661 662 2.047179 GTGCTCCCGTCCCACTTC 60.047 66.667 0.00 0.00 0.00 3.01
671 672 1.808891 CGTCCCACTTCTCCGTTTTGT 60.809 52.381 0.00 0.00 0.00 2.83
774 775 3.120041 CAAACCAATTCAAACCCGACAC 58.880 45.455 0.00 0.00 0.00 3.67
788 789 1.101049 CGACACAGCACCAAACCCTT 61.101 55.000 0.00 0.00 0.00 3.95
790 791 0.755327 ACACAGCACCAAACCCTTCC 60.755 55.000 0.00 0.00 0.00 3.46
791 792 0.468029 CACAGCACCAAACCCTTCCT 60.468 55.000 0.00 0.00 0.00 3.36
796 797 2.167729 ACCAAACCCTTCCTCCCCC 61.168 63.158 0.00 0.00 0.00 5.40
898 899 1.596260 CGAGGTACGAACGATCTGCTA 59.404 52.381 0.14 0.00 45.77 3.49
950 951 2.124653 TCCTCTCTCGTCGCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
1253 1260 4.538283 CGCGAGCGTCTCCGTCAT 62.538 66.667 0.00 0.00 36.15 3.06
1254 1261 2.202623 GCGAGCGTCTCCGTCATT 60.203 61.111 0.00 0.00 36.15 2.57
1274 1395 5.878116 TCATTCCAAAACCCTTGTAGTATCG 59.122 40.000 0.00 0.00 0.00 2.92
1399 1520 5.061064 CGTCTGTATGAAGCACTAGTGTTTC 59.939 44.000 33.36 33.36 46.55 2.78
1444 1565 6.492007 ACAGCAGCTTAATGATACATATGC 57.508 37.500 1.58 0.00 0.00 3.14
1534 1655 1.529438 TGTTTGTCGCGAAGATTGTCC 59.471 47.619 12.06 0.00 0.00 4.02
1615 1744 7.279981 TCAAGTAATTAGGATCACGAACAATGG 59.720 37.037 0.00 0.00 0.00 3.16
1647 1777 4.323945 CCAGTGGGCTGTAAACTTATGGTA 60.324 45.833 0.00 0.00 41.02 3.25
1662 1792 9.654919 AAACTTATGGTATGGGTATTTATTGCT 57.345 29.630 0.00 0.00 0.00 3.91
1835 1965 6.017440 TCTCCATTTAAACTGTTTCAACCTCG 60.017 38.462 9.38 0.00 0.00 4.63
1870 2000 6.482308 AGTTGTATGGCATTCGTCTAATTACC 59.518 38.462 4.78 0.00 0.00 2.85
2042 2172 2.684499 GGAAGGAGGAGGGGGCAAG 61.684 68.421 0.00 0.00 0.00 4.01
2057 2187 2.749621 GGGCAAGACACAGGTAATTCAG 59.250 50.000 0.00 0.00 0.00 3.02
2066 2196 5.300752 ACACAGGTAATTCAGAGTTCACAG 58.699 41.667 0.00 0.00 0.00 3.66
2067 2197 4.153117 CACAGGTAATTCAGAGTTCACAGC 59.847 45.833 0.00 0.00 0.00 4.40
2076 2206 4.014406 TCAGAGTTCACAGCTTACCGATA 58.986 43.478 0.00 0.00 0.00 2.92
2090 2220 5.465390 GCTTACCGATATTGTTGATGCACTA 59.535 40.000 0.00 0.00 0.00 2.74
2094 2224 6.521162 ACCGATATTGTTGATGCACTATGTA 58.479 36.000 0.00 0.00 0.00 2.29
2175 2305 1.818674 GGTGTTATTCCAAGGGCTGTG 59.181 52.381 0.00 0.00 0.00 3.66
2280 2410 5.424895 ACTCACTGATCTTTTAGCTCCAGAT 59.575 40.000 0.00 0.00 0.00 2.90
2352 2482 2.578480 AGATGGGAAGGGAGGAGTTTTC 59.422 50.000 0.00 0.00 0.00 2.29
2436 2566 3.374764 AGGTTCTGGCAAAAGGAAAACT 58.625 40.909 0.00 0.00 0.00 2.66
2448 2578 6.312672 GCAAAAGGAAAACTGCTGAAACTTTA 59.687 34.615 0.00 0.00 0.00 1.85
2616 2746 1.407258 GCTAGAGATGTGAGTTCCGCT 59.593 52.381 0.00 0.00 0.00 5.52
2658 2788 2.251818 TCCCTACTATGATCAGGCTGC 58.748 52.381 10.34 0.00 0.00 5.25
2659 2789 1.067283 CCCTACTATGATCAGGCTGCG 60.067 57.143 10.34 0.00 0.00 5.18
2660 2790 1.671261 CCTACTATGATCAGGCTGCGC 60.671 57.143 10.34 0.00 0.00 6.09
2708 2838 4.441495 CGCTGTTGTCATCTATTACAGGGA 60.441 45.833 10.19 0.00 46.50 4.20
2855 2985 3.972133 TGGAAATCTGCTCAATCATGGT 58.028 40.909 0.00 0.00 0.00 3.55
2885 3015 7.262772 CAATAAAATGCTGATCACCTGACATT 58.737 34.615 0.00 0.00 0.00 2.71
3023 3153 6.853720 TGAGACATTAAGCACACTAGACTAC 58.146 40.000 0.00 0.00 0.00 2.73
3063 3193 8.934023 AAATATCAAGAACAAACCAGAGGTTA 57.066 30.769 1.26 0.00 46.20 2.85
3117 3247 5.928976 TGACAAAGTCATCTTTCCTCTTGA 58.071 37.500 0.00 0.00 41.31 3.02
3128 3258 9.573166 TCATCTTTCCTCTTGAATAGTTGAAAA 57.427 29.630 0.00 0.00 31.67 2.29
3290 3420 4.930963 ACTTCATGAAAACACGATGCAAA 58.069 34.783 9.88 0.00 0.00 3.68
3291 3421 5.531634 ACTTCATGAAAACACGATGCAAAT 58.468 33.333 9.88 0.00 0.00 2.32
3292 3422 5.630680 ACTTCATGAAAACACGATGCAAATC 59.369 36.000 9.88 0.00 0.00 2.17
3293 3423 5.118642 TCATGAAAACACGATGCAAATCA 57.881 34.783 0.00 0.00 0.00 2.57
3294 3424 5.712004 TCATGAAAACACGATGCAAATCAT 58.288 33.333 0.00 0.00 38.32 2.45
3295 3425 5.573669 TCATGAAAACACGATGCAAATCATG 59.426 36.000 0.00 0.00 42.50 3.07
3322 3452 9.177608 CAACCATCTCTTCTTTAAACCATATGA 57.822 33.333 3.65 0.00 0.00 2.15
3556 3896 4.202245 TCTAAGGTTCCAATTCCAGTCG 57.798 45.455 0.00 0.00 0.00 4.18
3567 3907 0.389817 TTCCAGTCGCTTGATCACCG 60.390 55.000 0.00 1.24 0.00 4.94
3578 3918 3.431856 CTTGATCACCGCACAAATCATG 58.568 45.455 0.00 0.00 0.00 3.07
4169 4513 4.391216 GCCTATGGAATGACTGAATGATCG 59.609 45.833 0.00 0.00 0.00 3.69
4236 4582 0.037232 GAAACTGAGTGCGCCCTAGT 60.037 55.000 4.18 0.87 0.00 2.57
4504 4850 7.392393 TGCCTATACTATACATACGAAGCTCAA 59.608 37.037 0.00 0.00 0.00 3.02
4524 4870 0.671781 CACTGAGCTAGGCACACACC 60.672 60.000 0.00 0.00 0.00 4.16
4608 4954 8.717717 TCTTCATGGAGGAAGTTCATTACATAT 58.282 33.333 0.00 0.00 43.72 1.78
4628 4974 2.315176 TGCAAAGGCCAACACTGTAAT 58.685 42.857 5.01 0.00 40.13 1.89
4714 5060 8.266473 TCCTTTATTTCACTAGCCCGTTATTTA 58.734 33.333 0.00 0.00 0.00 1.40
4715 5061 9.063615 CCTTTATTTCACTAGCCCGTTATTTAT 57.936 33.333 0.00 0.00 0.00 1.40
4720 5066 6.474140 TCACTAGCCCGTTATTTATCTTCA 57.526 37.500 0.00 0.00 0.00 3.02
4772 5118 4.098914 TGCTTACCCATCTGTGTTTTCT 57.901 40.909 0.00 0.00 0.00 2.52
4778 5124 5.675684 ACCCATCTGTGTTTTCTGTTTTT 57.324 34.783 0.00 0.00 0.00 1.94
4827 5173 4.996976 AAGCTCACACGCTTCGAT 57.003 50.000 0.00 0.00 46.68 3.59
4850 5196 4.081972 TCTGAGCTGGAGAATACAACAGAC 60.082 45.833 0.00 0.00 32.86 3.51
5390 5737 4.263018 TCTCAACTCACTCAAGACATGG 57.737 45.455 0.00 0.00 0.00 3.66
5419 5766 6.936335 TCTTGCATAGAAACATCTCAACTTCA 59.064 34.615 0.00 0.00 0.00 3.02
5520 5867 2.668457 CGCACAAAGACATGTCTCTACC 59.332 50.000 28.01 14.30 39.39 3.18
5622 5969 6.365970 AAGAGAGCTTCAGTTCAAGGATTA 57.634 37.500 0.00 0.00 0.00 1.75
5644 5991 3.119245 ACAGAATTGCATGGCTTTGCTAG 60.119 43.478 12.87 0.00 43.18 3.42
5667 6014 2.489722 GAGCTCAACCTCAAATCCCAAC 59.510 50.000 9.40 0.00 0.00 3.77
5715 6062 2.385013 TAGCGCACACACATCTGATT 57.615 45.000 11.47 0.00 0.00 2.57
5835 6182 4.072131 TCTTATTTGGTTCCTGCAGTGTC 58.928 43.478 13.81 1.87 0.00 3.67
5954 6301 1.670811 CATGAGGTTTACCACGATGCC 59.329 52.381 1.13 0.00 38.89 4.40
5995 6343 8.420222 TCCAAATGTTCACTTGTGATTACAATT 58.580 29.630 3.22 7.41 45.16 2.32
6029 6377 1.140852 TCTGTCACACTCAAACAGGGG 59.859 52.381 2.26 0.00 40.60 4.79
6235 6583 8.822652 AAATTCTGCACTAAAGATTTCTTTGG 57.177 30.769 14.34 13.67 45.01 3.28
6378 6726 8.518430 TGCTAGAAAGAAAAATATGGTATGCA 57.482 30.769 0.00 0.00 0.00 3.96
6398 6746 7.611213 ATGCACATTCTACTTTGTTAGTACC 57.389 36.000 0.00 0.00 38.33 3.34
6408 6756 4.574828 ACTTTGTTAGTACCAGCACACTTG 59.425 41.667 0.00 0.00 34.56 3.16
6409 6757 3.830744 TGTTAGTACCAGCACACTTGT 57.169 42.857 0.00 0.00 0.00 3.16
6474 6853 1.447317 AACCTTGTGCTCGCACTTGG 61.447 55.000 21.14 21.84 46.30 3.61
6475 6854 1.597854 CCTTGTGCTCGCACTTGGA 60.598 57.895 21.14 0.00 46.30 3.53
6520 6899 6.048732 TGATGTGTGTTATATGTGGTCACT 57.951 37.500 2.66 0.00 0.00 3.41
6521 6900 6.472016 TGATGTGTGTTATATGTGGTCACTT 58.528 36.000 2.66 0.00 0.00 3.16
6535 6914 3.064931 GGTCACTTTTCACTAGGTTCGG 58.935 50.000 0.00 0.00 0.00 4.30
6657 7036 0.325296 TGGGAAGCCTACGTGGAGAT 60.325 55.000 0.00 0.00 38.35 2.75
6667 7046 3.379372 CCTACGTGGAGATAACCGAAGAA 59.621 47.826 0.00 0.00 38.35 2.52
6725 7104 3.947910 AATGTTGCTTGGTGGAGAATG 57.052 42.857 0.00 0.00 0.00 2.67
6822 7203 3.011566 TCTCCAGCAAAACAAGGACAA 57.988 42.857 0.00 0.00 0.00 3.18
6924 7305 8.730680 GTTCAGTCATCAGGTAATTACAATTGT 58.269 33.333 16.68 16.68 0.00 2.71
6925 7306 8.862325 TCAGTCATCAGGTAATTACAATTGTT 57.138 30.769 17.78 0.92 0.00 2.83
6954 7335 9.566432 ACTGATTAGTTTGAAGATGAGAAAACT 57.434 29.630 5.15 5.15 43.38 2.66
7071 7452 8.986847 ACTGCTCTTGAAGATAATGATATTTCG 58.013 33.333 0.00 0.00 0.00 3.46
7199 7581 5.378230 TGCCAGATTCACTAAGATTGGAT 57.622 39.130 0.00 0.00 0.00 3.41
7204 7586 5.050499 CAGATTCACTAAGATTGGATCGTGC 60.050 44.000 0.00 0.00 34.53 5.34
7234 7616 4.336713 CGAGACTGTGAGACCTATCATCAA 59.663 45.833 0.00 0.00 0.00 2.57
7247 7629 2.453983 TCATCAACGCATCACAGACA 57.546 45.000 0.00 0.00 0.00 3.41
7338 7720 1.203376 TGGGGGATGACTACAAGGTGA 60.203 52.381 0.00 0.00 0.00 4.02
7357 7739 6.259893 AGGTGAGCATATATATCAGTCTGGT 58.740 40.000 0.00 0.00 0.00 4.00
7440 7822 7.330208 TCTCTGTTTTATTACTTAACGCAGGTC 59.670 37.037 0.00 0.00 0.00 3.85
7566 7948 1.355043 AGGGACAGTAGAACTCCGTCT 59.645 52.381 0.00 0.00 0.00 4.18
7623 8005 3.118482 TGGCAATTGAGATGGAGAGAGTC 60.118 47.826 10.34 0.00 0.00 3.36
7656 8038 4.202419 ACAATTAACTAGACACAGGGCACA 60.202 41.667 0.00 0.00 0.00 4.57
7810 8194 3.452474 CTGTAGCACTTCTGTATCCTGC 58.548 50.000 0.00 0.00 0.00 4.85
7882 8266 0.689055 AGCTCTTGTGGCAGATCACA 59.311 50.000 0.00 0.00 44.81 3.58
7904 8288 5.418840 ACAGTGAATAATTTTCTCGCCCAAT 59.581 36.000 0.00 0.00 0.00 3.16
7939 8323 2.568623 AGCGGTCTTCCAAGAAACAT 57.431 45.000 0.00 0.00 36.68 2.71
7972 8356 4.699257 ACTGAAAGCTTTTGGATCTGCTAG 59.301 41.667 14.05 0.00 37.60 3.42
7975 8359 5.948162 TGAAAGCTTTTGGATCTGCTAGATT 59.052 36.000 14.05 0.00 34.53 2.40
8041 8503 4.572389 CCACACGATCTAGCTGCTTTAAAT 59.428 41.667 7.79 0.00 0.00 1.40
8042 8504 5.753438 CCACACGATCTAGCTGCTTTAAATA 59.247 40.000 7.79 0.00 0.00 1.40
8043 8505 6.292381 CCACACGATCTAGCTGCTTTAAATAC 60.292 42.308 7.79 0.00 0.00 1.89
8044 8506 5.459107 ACACGATCTAGCTGCTTTAAATACG 59.541 40.000 7.79 7.92 0.00 3.06
8045 8507 4.444720 ACGATCTAGCTGCTTTAAATACGC 59.555 41.667 7.79 0.00 0.00 4.42
8046 8508 4.444388 CGATCTAGCTGCTTTAAATACGCA 59.556 41.667 7.79 1.25 0.00 5.24
8047 8509 5.051039 CGATCTAGCTGCTTTAAATACGCAA 60.051 40.000 7.79 0.00 32.66 4.85
8076 8538 2.139917 GTGTGGCACGAAGTAACATGA 58.860 47.619 13.77 0.00 41.61 3.07
8078 8540 3.188460 GTGTGGCACGAAGTAACATGATT 59.812 43.478 13.77 0.00 41.61 2.57
8095 8557 7.566760 ACATGATTCAAACGCCTTCATTATA 57.433 32.000 0.00 0.00 0.00 0.98
8302 8767 2.514803 AGTTGCCAGGATGTTTACACC 58.485 47.619 0.00 0.00 0.00 4.16
8306 8771 2.038689 TGCCAGGATGTTTACACCGTAA 59.961 45.455 0.00 0.00 0.00 3.18
8382 8848 4.098914 TGGCAATTCCAGTACTTTGACT 57.901 40.909 11.27 0.00 40.72 3.41
8385 8851 6.953101 TGGCAATTCCAGTACTTTGACTATA 58.047 36.000 11.27 0.00 40.72 1.31
8419 8886 7.670009 TTTTGTATGAGCCATGGAAATTTTG 57.330 32.000 18.40 0.00 0.00 2.44
8424 8891 4.151121 TGAGCCATGGAAATTTTGAGTGA 58.849 39.130 18.40 0.00 0.00 3.41
8429 8896 5.702209 GCCATGGAAATTTTGAGTGAATGTT 59.298 36.000 18.40 0.00 0.00 2.71
8431 8898 7.255208 GCCATGGAAATTTTGAGTGAATGTTTT 60.255 33.333 18.40 0.00 0.00 2.43
8443 8910 8.674263 TGAGTGAATGTTTTATGGCAATTTTT 57.326 26.923 0.00 0.00 0.00 1.94
8583 9053 3.942539 CATGGCAATTCATGTGCAATG 57.057 42.857 9.14 9.14 44.72 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.814280 TCTTCTTGAACCACGTCCTC 57.186 50.000 0.00 0.00 0.00 3.71
11 12 2.254546 TGCATCTTCTTGAACCACGT 57.745 45.000 0.00 0.00 0.00 4.49
20 21 1.674441 CATGTCGGCATGCATCTTCTT 59.326 47.619 18.32 0.61 44.87 2.52
31 32 1.291184 CGAACTTGAGCATGTCGGCA 61.291 55.000 0.00 0.00 35.83 5.69
33 34 0.716108 GTCGAACTTGAGCATGTCGG 59.284 55.000 0.00 0.00 0.00 4.79
70 71 1.971167 AAAAAGGATGGCGCTCGCA 60.971 52.632 16.36 0.00 44.11 5.10
110 111 1.825191 ATCACGGCCATGGTCATGC 60.825 57.895 18.31 0.00 37.49 4.06
125 126 4.794439 CGCTCGACCACGCCATCA 62.794 66.667 0.00 0.00 39.58 3.07
148 149 1.862201 CACATGCCAGCACACAAAAAG 59.138 47.619 0.00 0.00 0.00 2.27
262 263 3.197790 CCATGCTGTCGCCCGAAG 61.198 66.667 0.00 0.00 34.43 3.79
298 299 2.549064 ATTTGAAAAAGGCCCACAGC 57.451 45.000 0.00 0.00 42.60 4.40
300 301 3.944015 CACAAATTTGAAAAAGGCCCACA 59.056 39.130 24.64 0.00 0.00 4.17
302 303 3.944015 CACACAAATTTGAAAAAGGCCCA 59.056 39.130 24.64 0.00 0.00 5.36
304 305 3.545822 CGCACACAAATTTGAAAAAGGCC 60.546 43.478 24.64 0.00 0.00 5.19
313 314 3.010624 TCATGTCCGCACACAAATTTG 57.989 42.857 16.67 16.67 34.48 2.32
353 354 2.240612 GATTTGGGTCGACAGTGCGC 62.241 60.000 18.91 0.00 0.00 6.09
365 366 4.320935 CGTCCACCTTGTTTAAGATTTGGG 60.321 45.833 0.00 0.00 35.92 4.12
398 399 1.020333 TTATCCGTTTGGTTCGGCCG 61.020 55.000 22.12 22.12 46.49 6.13
405 406 1.170442 CCGCCTTTTATCCGTTTGGT 58.830 50.000 0.00 0.00 36.30 3.67
411 412 2.731027 GCTTTTGTCCGCCTTTTATCCG 60.731 50.000 0.00 0.00 0.00 4.18
432 433 3.911155 GAGCAACTTCAACGCGGCG 62.911 63.158 22.36 22.36 0.00 6.46
438 439 7.195839 AGAAAGTTCATAGAGCAACTTCAAC 57.804 36.000 0.00 0.00 41.09 3.18
442 443 8.470002 ACAAAAAGAAAGTTCATAGAGCAACTT 58.530 29.630 0.00 0.00 43.28 2.66
627 628 3.103911 CGTTGAGGTCGTGCGGAC 61.104 66.667 0.00 0.00 45.31 4.79
678 679 2.483188 GGAGGGAGCCGTTATACAACAG 60.483 54.545 0.00 0.00 34.05 3.16
774 775 0.895559 GGAGGAAGGGTTTGGTGCTG 60.896 60.000 0.00 0.00 0.00 4.41
898 899 2.042537 TGGATCGGAGCAGAGCCT 60.043 61.111 11.40 0.00 46.20 4.58
950 951 6.509418 TTTTGGAATCAGAATAGGGAAACG 57.491 37.500 0.00 0.00 0.00 3.60
1253 1260 5.231702 ACGATACTACAAGGGTTTTGGAA 57.768 39.130 0.00 0.00 0.00 3.53
1254 1261 4.895668 ACGATACTACAAGGGTTTTGGA 57.104 40.909 0.00 0.00 0.00 3.53
1274 1395 5.063438 TGAACAACGAGCAATAAGAGCATAC 59.937 40.000 0.00 0.00 0.00 2.39
1399 1520 5.221224 TGTTGTCACTTGGGCAATAAAGAAG 60.221 40.000 0.00 0.00 0.00 2.85
1444 1565 2.549754 GCCAGATGTATCCACCAATTCG 59.450 50.000 0.00 0.00 0.00 3.34
1504 1625 1.334960 CGCGACAAACAGAAATTGGCT 60.335 47.619 0.00 0.00 33.49 4.75
1505 1626 1.052287 CGCGACAAACAGAAATTGGC 58.948 50.000 0.00 0.00 32.27 4.52
1564 1693 2.930950 AGCAAAGACAGTAGCAACCAA 58.069 42.857 0.00 0.00 0.00 3.67
1647 1777 5.711976 GCCTACATCAGCAATAAATACCCAT 59.288 40.000 0.00 0.00 0.00 4.00
1835 1965 5.567138 ATGCCATACAACTTGAAGTAAGC 57.433 39.130 0.00 0.00 40.16 3.09
1870 2000 7.095229 CGAACACCTACATTCATATGTAATGGG 60.095 40.741 21.51 17.80 44.44 4.00
2042 2172 5.297547 TGTGAACTCTGAATTACCTGTGTC 58.702 41.667 0.00 0.00 0.00 3.67
2057 2187 5.109903 ACAATATCGGTAAGCTGTGAACTC 58.890 41.667 0.00 0.00 0.00 3.01
2066 2196 4.273480 AGTGCATCAACAATATCGGTAAGC 59.727 41.667 0.00 0.00 0.00 3.09
2067 2197 5.991328 AGTGCATCAACAATATCGGTAAG 57.009 39.130 0.00 0.00 0.00 2.34
2076 2206 5.368145 ACGGATACATAGTGCATCAACAAT 58.632 37.500 0.00 0.00 0.00 2.71
2280 2410 9.376075 GATTTGTCATCTGAGAATTTAGACTCA 57.624 33.333 0.00 0.00 40.22 3.41
2352 2482 0.824759 CTTCCTCCAGTCCCCTAACG 59.175 60.000 0.00 0.00 0.00 3.18
2436 2566 4.397730 TGCTTGTTGAGTAAAGTTTCAGCA 59.602 37.500 0.00 0.00 33.57 4.41
2448 2578 3.131396 CCGACTACTTTGCTTGTTGAGT 58.869 45.455 0.00 0.00 0.00 3.41
2616 2746 3.922171 ACAAAAGTGAAATGCCCCAAA 57.078 38.095 0.00 0.00 0.00 3.28
2660 2790 1.888215 ATATCGCACAGCCTCAATGG 58.112 50.000 0.00 0.00 39.35 3.16
2661 2791 3.657634 AGTATATCGCACAGCCTCAATG 58.342 45.455 0.00 0.00 0.00 2.82
2662 2792 4.342862 AAGTATATCGCACAGCCTCAAT 57.657 40.909 0.00 0.00 0.00 2.57
2663 2793 3.819564 AAGTATATCGCACAGCCTCAA 57.180 42.857 0.00 0.00 0.00 3.02
2664 2794 3.304458 CGTAAGTATATCGCACAGCCTCA 60.304 47.826 0.00 0.00 0.00 3.86
2665 2795 3.235195 CGTAAGTATATCGCACAGCCTC 58.765 50.000 0.00 0.00 0.00 4.70
2666 2796 3.284323 CGTAAGTATATCGCACAGCCT 57.716 47.619 0.00 0.00 0.00 4.58
2708 2838 1.603236 CTCCTGCTTCTCTGGCTCGT 61.603 60.000 0.00 0.00 34.13 4.18
2855 2985 6.095300 CAGGTGATCAGCATTTTATTGGTGTA 59.905 38.462 25.71 0.00 43.74 2.90
2885 3015 2.899976 TCTCTGCGTGACAAAACAGAA 58.100 42.857 5.22 0.00 38.61 3.02
3023 3153 2.788172 TATTTTTGGCACGGTGCGCG 62.788 55.000 25.24 0.00 46.21 6.86
3063 3193 9.384764 GAATTAGTTTAACAGATACAAGAGCCT 57.615 33.333 0.00 0.00 0.00 4.58
3128 3258 8.145767 CCTGGAAAATCATGTGCACATAATTAT 58.854 33.333 30.92 18.44 34.26 1.28
3290 3420 7.363268 GGTTTAAAGAAGAGATGGTTGCATGAT 60.363 37.037 0.00 0.00 0.00 2.45
3291 3421 6.071952 GGTTTAAAGAAGAGATGGTTGCATGA 60.072 38.462 0.00 0.00 0.00 3.07
3292 3422 6.095377 GGTTTAAAGAAGAGATGGTTGCATG 58.905 40.000 0.00 0.00 0.00 4.06
3293 3423 5.774690 TGGTTTAAAGAAGAGATGGTTGCAT 59.225 36.000 0.00 0.00 0.00 3.96
3294 3424 5.136828 TGGTTTAAAGAAGAGATGGTTGCA 58.863 37.500 0.00 0.00 0.00 4.08
3295 3425 5.705609 TGGTTTAAAGAAGAGATGGTTGC 57.294 39.130 0.00 0.00 0.00 4.17
3296 3426 9.177608 TCATATGGTTTAAAGAAGAGATGGTTG 57.822 33.333 2.13 0.00 0.00 3.77
3297 3427 9.927081 ATCATATGGTTTAAAGAAGAGATGGTT 57.073 29.630 2.13 0.00 0.00 3.67
3298 3428 9.347240 CATCATATGGTTTAAAGAAGAGATGGT 57.653 33.333 2.13 0.00 0.00 3.55
3366 3496 9.130661 CCCCTCATAATTATGAAACATTACACA 57.869 33.333 24.61 3.01 41.72 3.72
3538 3878 1.073923 AGCGACTGGAATTGGAACCTT 59.926 47.619 0.00 0.00 0.00 3.50
3556 3896 1.199789 TGATTTGTGCGGTGATCAAGC 59.800 47.619 15.25 15.25 0.00 4.01
3567 3907 5.910637 ACATGTGTTTTCATGATTTGTGC 57.089 34.783 12.58 0.00 45.41 4.57
3578 3918 5.102313 GGCCTAGCATTTACATGTGTTTTC 58.898 41.667 9.11 0.00 32.28 2.29
3730 4072 6.476378 ACAGTTCTGCCATAGATAAACAAGT 58.524 36.000 0.00 0.00 34.80 3.16
4236 4582 7.014711 CCTGCATATACTTCTCTTCAAGGACTA 59.985 40.741 0.00 0.00 0.00 2.59
4504 4850 0.034059 GTGTGTGCCTAGCTCAGTGT 59.966 55.000 0.00 0.00 32.70 3.55
4514 4860 2.046892 GAGATGCGGTGTGTGCCT 60.047 61.111 0.00 0.00 0.00 4.75
4524 4870 5.440234 ACAGTGTAGTATAAGGAGATGCG 57.560 43.478 0.00 0.00 0.00 4.73
4608 4954 1.769026 TTACAGTGTTGGCCTTTGCA 58.231 45.000 3.32 0.00 40.13 4.08
4628 4974 0.823356 GGCTGCAGTTTGTTCCCAGA 60.823 55.000 16.64 0.00 0.00 3.86
4714 5060 6.684613 GCCACCAATGCAAATATCTTGAAGAT 60.685 38.462 12.86 12.86 38.70 2.40
4715 5061 5.394443 GCCACCAATGCAAATATCTTGAAGA 60.394 40.000 0.00 0.00 0.00 2.87
4720 5066 6.407299 CCTTTAGCCACCAATGCAAATATCTT 60.407 38.462 0.00 0.00 0.00 2.40
4827 5173 4.081972 GTCTGTTGTATTCTCCAGCTCAGA 60.082 45.833 0.00 0.00 0.00 3.27
4850 5196 7.496529 TTTTGAAAATAGCCCAGATAGATCG 57.503 36.000 0.00 0.00 0.00 3.69
5307 5654 5.640147 TCTTGCCCTTCCTTTCTGAAAATA 58.360 37.500 4.18 0.00 0.00 1.40
5374 5721 6.805016 AAGATATCCATGTCTTGAGTGAGT 57.195 37.500 0.00 0.00 36.96 3.41
5390 5737 9.270640 AGTTGAGATGTTTCTATGCAAGATATC 57.729 33.333 0.00 0.00 33.05 1.63
5499 5846 2.668457 GGTAGAGACATGTCTTTGTGCG 59.332 50.000 28.46 0.00 40.61 5.34
5539 5886 5.957774 ACCTATGGAAGTTTGCAATGGTTAT 59.042 36.000 0.00 0.00 35.76 1.89
5622 5969 2.088950 GCAAAGCCATGCAATTCTGT 57.911 45.000 6.46 0.00 45.70 3.41
5644 5991 2.087646 GGGATTTGAGGTTGAGCTCAC 58.912 52.381 18.03 11.66 0.00 3.51
5715 6062 6.620877 ATGAAGTGTACTTACATCCTCCAA 57.379 37.500 0.00 0.00 38.63 3.53
5835 6182 1.198713 TCAGCTAAGAGGCCCTTCAG 58.801 55.000 9.46 7.54 36.34 3.02
5995 6343 8.735315 TGAGTGTGACAGAATTTCTTAAAACAA 58.265 29.630 0.00 0.00 0.00 2.83
6029 6377 4.727507 TCTCTCCACATTTCTAGTGAGC 57.272 45.455 0.00 0.00 39.30 4.26
6137 6485 2.241160 TGCTTTTGATGTGATGCCTGT 58.759 42.857 0.00 0.00 0.00 4.00
6224 6572 8.650143 TGCCTAATAAACTTCCAAAGAAATCT 57.350 30.769 0.00 0.00 0.00 2.40
6288 6636 0.538584 TCTTCATCAGCGGCACAGAT 59.461 50.000 1.45 0.00 0.00 2.90
6378 6726 6.649557 GTGCTGGTACTAACAAAGTAGAATGT 59.350 38.462 0.00 0.00 41.42 2.71
6488 6867 9.117145 CACATATAACACACATCAACAAGTTTC 57.883 33.333 0.00 0.00 0.00 2.78
6520 6899 3.325425 TGTCATCCCGAACCTAGTGAAAA 59.675 43.478 0.00 0.00 0.00 2.29
6521 6900 2.901192 TGTCATCCCGAACCTAGTGAAA 59.099 45.455 0.00 0.00 0.00 2.69
6535 6914 1.336125 GCAAGGCTGCTTATGTCATCC 59.664 52.381 0.00 0.00 45.74 3.51
6657 7036 4.637276 TCTGTGAAATGCTTCTTCGGTTA 58.363 39.130 0.00 0.00 32.33 2.85
6667 7046 6.318144 CAGAGGATATGTTTCTGTGAAATGCT 59.682 38.462 0.00 0.00 34.92 3.79
6725 7104 2.808543 CAGAAACTTACCACTGCTGGAC 59.191 50.000 0.00 0.00 40.55 4.02
6790 7171 5.661503 TTTGCTGGAGAATGGGGAATATA 57.338 39.130 0.00 0.00 0.00 0.86
6924 7305 9.996554 TTCTCATCTTCAAACTAATCAGTGTAA 57.003 29.630 0.00 0.00 34.36 2.41
6925 7306 9.996554 TTTCTCATCTTCAAACTAATCAGTGTA 57.003 29.630 0.00 0.00 34.36 2.90
7199 7581 2.100410 GTCTCGCAGATCGCACGA 59.900 61.111 9.58 8.49 42.60 4.35
7204 7586 0.729690 TCTCACAGTCTCGCAGATCG 59.270 55.000 0.00 0.00 40.15 3.69
7211 7593 3.879892 TGATGATAGGTCTCACAGTCTCG 59.120 47.826 0.00 0.00 0.00 4.04
7234 7616 0.250038 AAGCTGTGTCTGTGATGCGT 60.250 50.000 0.00 0.00 0.00 5.24
7247 7629 2.301346 CTTTGAAGGTCACCAAGCTGT 58.699 47.619 0.00 0.00 35.40 4.40
7338 7720 4.098654 GGCGACCAGACTGATATATATGCT 59.901 45.833 3.32 0.00 0.00 3.79
7357 7739 4.321601 CCCAATTGATAAACAAACTGGCGA 60.322 41.667 7.12 0.00 40.85 5.54
7566 7948 2.129607 GCGTTTCCAGTCACGAGTTTA 58.870 47.619 0.00 0.00 38.76 2.01
7623 8005 7.093902 TGTGTCTAGTTAATTGTAGTGAGAGGG 60.094 40.741 0.00 0.00 0.00 4.30
7656 8038 9.520204 CAACATCTCAAGAACATGTAAAAGTTT 57.480 29.630 0.00 0.00 30.37 2.66
7802 8186 1.668419 ACTTCGCAATGGCAGGATAC 58.332 50.000 0.00 0.00 41.24 2.24
7803 8187 2.016318 CAACTTCGCAATGGCAGGATA 58.984 47.619 0.00 0.00 41.24 2.59
7810 8194 3.866883 AATTACCCAACTTCGCAATGG 57.133 42.857 0.00 0.00 0.00 3.16
7856 8240 3.060615 CCACAAGAGCTGGCTGGC 61.061 66.667 0.00 0.00 0.00 4.85
7861 8245 0.035725 TGATCTGCCACAAGAGCTGG 60.036 55.000 0.00 0.00 33.68 4.85
7862 8246 1.085091 GTGATCTGCCACAAGAGCTG 58.915 55.000 0.00 0.00 37.04 4.24
7882 8266 5.652014 TGATTGGGCGAGAAAATTATTCACT 59.348 36.000 0.00 0.00 0.00 3.41
7904 8288 2.066262 CCGCTTCTTCGTTTAGCTTGA 58.934 47.619 0.00 0.00 32.80 3.02
7933 8317 5.403466 GCTTTCAGTTGATGACCAATGTTTC 59.597 40.000 0.00 0.00 37.77 2.78
7939 8323 5.350633 CAAAAGCTTTCAGTTGATGACCAA 58.649 37.500 13.10 0.00 37.77 3.67
8041 8503 2.663520 CACGTGTGGGCTTGCGTA 60.664 61.111 7.58 0.00 35.71 4.42
8042 8504 4.849310 ACACGTGTGGGCTTGCGT 62.849 61.111 22.71 0.00 38.14 5.24
8043 8505 4.312231 CACACGTGTGGGCTTGCG 62.312 66.667 35.65 12.08 42.10 4.85
8069 8531 5.895636 ATGAAGGCGTTTGAATCATGTTA 57.104 34.783 0.00 0.00 30.00 2.41
8095 8557 8.918961 TCTGTTTTGACGTGACAAAATAAATT 57.081 26.923 15.58 0.00 46.44 1.82
8099 8561 7.129622 GTCATCTGTTTTGACGTGACAAAATA 58.870 34.615 15.58 12.76 46.44 1.40
8106 8568 4.376146 TGATGTCATCTGTTTTGACGTGA 58.624 39.130 13.90 0.00 45.14 4.35
8276 8740 4.871933 AAACATCCTGGCAACTTTTAGG 57.128 40.909 0.00 0.00 37.61 2.69
8290 8755 5.866335 TGACAATTACGGTGTAAACATCC 57.134 39.130 0.00 0.00 0.00 3.51
8333 8799 8.405531 GCTCTATAAACTAAAATTGCCACATGA 58.594 33.333 0.00 0.00 0.00 3.07
8412 8879 8.674263 TGCCATAAAACATTCACTCAAAATTT 57.326 26.923 0.00 0.00 0.00 1.82
8419 8886 8.558700 ACAAAAATTGCCATAAAACATTCACTC 58.441 29.630 0.00 0.00 0.00 3.51
8429 8896 9.342308 TGAACCATAAACAAAAATTGCCATAAA 57.658 25.926 0.00 0.00 0.00 1.40
8431 8898 8.944029 CATGAACCATAAACAAAAATTGCCATA 58.056 29.630 0.00 0.00 0.00 2.74
8443 8910 4.406456 AGACTTGCCATGAACCATAAACA 58.594 39.130 0.00 0.00 0.00 2.83
8540 9010 7.809546 TGGTGTTTACACTGAAATTGTCATA 57.190 32.000 12.32 0.00 45.73 2.15
8548 9018 3.291584 TGCCATGGTGTTTACACTGAAA 58.708 40.909 14.67 0.00 45.73 2.69
8583 9053 2.028476 GGGGTTAAAAGTTGCCATGTCC 60.028 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.