Multiple sequence alignment - TraesCS5D01G162400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G162400 chr5D 100.000 9957 0 0 1 9957 253387896 253377940 0.000000e+00 18388.0
1 TraesCS5D01G162400 chr5D 87.775 818 71 14 9164 9957 545413381 545412569 0.000000e+00 929.0
2 TraesCS5D01G162400 chr5B 92.984 7241 253 83 1538 8664 285834177 285827078 0.000000e+00 10322.0
3 TraesCS5D01G162400 chr5B 88.191 1067 53 31 51 1078 285835861 285834829 0.000000e+00 1205.0
4 TraesCS5D01G162400 chr5B 88.971 807 72 9 9164 9957 64364310 64363508 0.000000e+00 981.0
5 TraesCS5D01G162400 chr5B 86.882 465 47 10 981 1440 641695139 641695594 8.920000e-140 508.0
6 TraesCS5D01G162400 chr5B 90.437 366 18 8 8808 9165 285827017 285826661 5.450000e-127 466.0
7 TraesCS5D01G162400 chr5A 93.175 5905 199 59 1538 7359 335698170 335692387 0.000000e+00 8484.0
8 TraesCS5D01G162400 chr5A 90.260 1848 84 46 7395 9165 335692144 335690316 0.000000e+00 2327.0
9 TraesCS5D01G162400 chr5A 86.957 1012 77 28 197 1184 335706179 335705199 0.000000e+00 1086.0
10 TraesCS5D01G162400 chr5A 89.931 288 22 5 1158 1440 432739256 432738971 2.040000e-96 364.0
11 TraesCS5D01G162400 chr3D 90.617 746 60 4 9166 9901 188906065 188906810 0.000000e+00 981.0
12 TraesCS5D01G162400 chr3D 91.875 160 6 5 1188 1342 484481812 484481969 6.060000e-52 217.0
13 TraesCS5D01G162400 chr4B 88.738 808 75 11 9164 9957 647601477 647600672 0.000000e+00 974.0
14 TraesCS5D01G162400 chr4B 88.724 807 72 10 9164 9957 604552041 604552841 0.000000e+00 968.0
15 TraesCS5D01G162400 chr4B 83.203 256 11 14 1190 1440 420604451 420604223 1.310000e-48 206.0
16 TraesCS5D01G162400 chr3B 88.600 807 73 11 9164 9957 521662167 521661367 0.000000e+00 963.0
17 TraesCS5D01G162400 chr3B 87.742 465 43 8 981 1440 512038908 512039363 1.900000e-146 531.0
18 TraesCS5D01G162400 chr6B 88.104 807 77 12 9163 9957 678680276 678679477 0.000000e+00 941.0
19 TraesCS5D01G162400 chr7A 87.890 801 82 10 9164 9951 571381424 571382222 0.000000e+00 928.0
20 TraesCS5D01G162400 chr7A 85.806 465 52 9 981 1440 655764807 655765262 1.950000e-131 481.0
21 TraesCS5D01G162400 chr7A 89.474 133 12 1 1308 1440 498451059 498450929 6.190000e-37 167.0
22 TraesCS5D01G162400 chr7D 87.531 818 79 12 9162 9957 624920871 624921687 0.000000e+00 924.0
23 TraesCS5D01G162400 chr7D 88.298 470 41 9 976 1440 76201717 76202177 1.460000e-152 551.0
24 TraesCS5D01G162400 chr1B 87.957 465 42 8 981 1440 144660514 144660969 4.090000e-148 536.0
25 TraesCS5D01G162400 chr3A 85.591 465 53 8 981 1440 191042492 191042037 9.050000e-130 475.0
26 TraesCS5D01G162400 chr2D 91.875 160 6 5 1188 1342 374548579 374548422 6.060000e-52 217.0
27 TraesCS5D01G162400 chr2A 93.333 45 2 1 186 230 564042074 564042031 2.320000e-06 65.8
28 TraesCS5D01G162400 chr1D 92.683 41 2 1 11 50 35928390 35928350 3.880000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G162400 chr5D 253377940 253387896 9956 True 18388.000000 18388 100.000000 1 9957 1 chr5D.!!$R1 9956
1 TraesCS5D01G162400 chr5D 545412569 545413381 812 True 929.000000 929 87.775000 9164 9957 1 chr5D.!!$R2 793
2 TraesCS5D01G162400 chr5B 285826661 285835861 9200 True 3997.666667 10322 90.537333 51 9165 3 chr5B.!!$R2 9114
3 TraesCS5D01G162400 chr5B 64363508 64364310 802 True 981.000000 981 88.971000 9164 9957 1 chr5B.!!$R1 793
4 TraesCS5D01G162400 chr5A 335690316 335698170 7854 True 5405.500000 8484 91.717500 1538 9165 2 chr5A.!!$R3 7627
5 TraesCS5D01G162400 chr5A 335705199 335706179 980 True 1086.000000 1086 86.957000 197 1184 1 chr5A.!!$R1 987
6 TraesCS5D01G162400 chr3D 188906065 188906810 745 False 981.000000 981 90.617000 9166 9901 1 chr3D.!!$F1 735
7 TraesCS5D01G162400 chr4B 647600672 647601477 805 True 974.000000 974 88.738000 9164 9957 1 chr4B.!!$R2 793
8 TraesCS5D01G162400 chr4B 604552041 604552841 800 False 968.000000 968 88.724000 9164 9957 1 chr4B.!!$F1 793
9 TraesCS5D01G162400 chr3B 521661367 521662167 800 True 963.000000 963 88.600000 9164 9957 1 chr3B.!!$R1 793
10 TraesCS5D01G162400 chr6B 678679477 678680276 799 True 941.000000 941 88.104000 9163 9957 1 chr6B.!!$R1 794
11 TraesCS5D01G162400 chr7A 571381424 571382222 798 False 928.000000 928 87.890000 9164 9951 1 chr7A.!!$F1 787
12 TraesCS5D01G162400 chr7D 624920871 624921687 816 False 924.000000 924 87.531000 9162 9957 1 chr7D.!!$F2 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 524 0.039708 GGATACTAGCCCGTACGTGC 60.040 60.000 15.23 15.23 0.00 5.34 F
1663 2100 0.103937 GAGGAGGAGGAAGACGCATG 59.896 60.000 0.00 0.00 0.00 4.06 F
2369 2842 0.038744 AAATGCTAGTGCTGCTGGGT 59.961 50.000 0.00 0.00 40.48 4.51 F
2370 2843 0.679002 AATGCTAGTGCTGCTGGGTG 60.679 55.000 0.00 0.00 40.48 4.61 F
2826 3337 1.078848 CTTCAACCCCTCCTCTGCG 60.079 63.158 0.00 0.00 0.00 5.18 F
4168 4686 1.688197 GGTATGGGCCATGGAAATGTG 59.312 52.381 29.14 0.00 0.00 3.21 F
4899 5424 1.760029 TCCGTGCCATGCAAGAGTATA 59.240 47.619 3.56 0.00 41.47 1.47 F
5270 5823 0.773644 AGAGGGTGTCATGCTGGTTT 59.226 50.000 0.00 0.00 0.00 3.27 F
6096 6658 0.040058 TCCACCCATGCATTCTGCTT 59.960 50.000 0.00 0.00 45.31 3.91 F
6491 7053 4.202040 TGCCATGAAAGCGATGGATAAAAG 60.202 41.667 4.34 0.00 42.81 2.27 F
7249 7812 0.941463 CAGTCACAGGCGTGTCACTC 60.941 60.000 13.43 2.88 44.02 3.51 F
8173 8957 0.257328 TGGTCCTTGTGTTGCAGGAA 59.743 50.000 0.00 0.00 31.60 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2178 0.032813 ATCCAGCCAACCCAATGGAG 60.033 55.000 0.00 0.00 44.67 3.86 R
2533 3027 0.250727 TAAAGGCTGCAGCGGAAACT 60.251 50.000 31.19 19.59 43.26 2.66 R
3491 4007 0.698818 GGGGAAAGAAGAGAAGGGCA 59.301 55.000 0.00 0.00 0.00 5.36 R
4168 4686 4.320608 TGGTTTCAGCATGTTCTTTTCC 57.679 40.909 0.00 0.00 37.40 3.13 R
4725 5250 1.079543 CTGCGAGGAGGACCAACAG 60.080 63.158 0.00 0.00 38.94 3.16 R
5248 5801 1.271597 ACCAGCATGACACCCTCTTTC 60.272 52.381 0.00 0.00 39.69 2.62 R
5828 6389 2.600731 GATGACTGTCAGAACTCCACG 58.399 52.381 16.46 0.00 0.00 4.94 R
6231 6793 3.117701 TCAATGTTTTCTCCACCCTCACA 60.118 43.478 0.00 0.00 0.00 3.58 R
7249 7812 3.210227 GGACAAAACCCCAAAACAATGG 58.790 45.455 0.00 0.00 40.35 3.16 R
8173 8957 1.493022 TGGCCAGCTCCGGTAATAATT 59.507 47.619 0.00 0.00 0.00 1.40 R
8824 9660 0.453793 CGCCAGTTCCACACACAAAA 59.546 50.000 0.00 0.00 0.00 2.44 R
9462 10321 0.179137 CGACGACATGGCTAGCAAGA 60.179 55.000 18.24 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.195683 CCCCACCGCCTAATGCAT 59.804 61.111 0.00 0.00 41.33 3.96
18 19 2.195567 CCCCACCGCCTAATGCATG 61.196 63.158 0.00 0.00 41.33 4.06
19 20 1.152984 CCCACCGCCTAATGCATGA 60.153 57.895 0.00 0.00 41.33 3.07
20 21 0.538057 CCCACCGCCTAATGCATGAT 60.538 55.000 0.00 0.00 41.33 2.45
21 22 1.271325 CCCACCGCCTAATGCATGATA 60.271 52.381 0.00 0.00 41.33 2.15
22 23 2.618816 CCCACCGCCTAATGCATGATAT 60.619 50.000 0.00 0.00 41.33 1.63
23 24 2.421073 CCACCGCCTAATGCATGATATG 59.579 50.000 0.00 0.00 41.33 1.78
157 158 0.949397 CACGCCTCATGATTGATGGG 59.051 55.000 0.00 0.00 36.78 4.00
167 168 4.823442 TCATGATTGATGGGCAAGTCATAC 59.177 41.667 0.00 0.00 40.42 2.39
170 171 2.418368 TGATGGGCAAGTCATACCAC 57.582 50.000 0.00 0.00 35.52 4.16
182 183 5.331876 AGTCATACCACTGAAAGAGTAGC 57.668 43.478 0.00 0.00 37.43 3.58
186 187 1.068472 ACCACTGAAAGAGTAGCGTCG 60.068 52.381 0.00 0.00 37.43 5.12
193 194 4.806330 TGAAAGAGTAGCGTCGAAAAGAT 58.194 39.130 0.00 0.00 0.00 2.40
194 195 5.227908 TGAAAGAGTAGCGTCGAAAAGATT 58.772 37.500 0.00 0.00 0.00 2.40
249 250 9.050601 CCATGTCAAATCTAGATCTTAAACCTC 57.949 37.037 5.51 0.00 0.00 3.85
252 253 7.974501 TGTCAAATCTAGATCTTAAACCTCGTC 59.025 37.037 5.51 0.00 0.00 4.20
285 286 3.672767 TCGAAAGAAACCTAGGTGTCC 57.327 47.619 26.00 11.84 37.03 4.02
306 307 3.132160 CCAGCTATGCTCATTCACTCTG 58.868 50.000 0.00 0.00 36.40 3.35
310 311 3.244009 GCTATGCTCATTCACTCTGCCTA 60.244 47.826 0.00 0.00 0.00 3.93
392 393 4.847516 TCGAGATTGGCCGCGACG 62.848 66.667 8.23 0.10 33.69 5.12
469 470 2.173356 TGTCTCCTTCCCAAGCCATATG 59.827 50.000 0.00 0.00 0.00 1.78
497 501 2.224402 CCTGTAGCCAAGATAAGGGAGC 60.224 54.545 0.00 0.00 0.00 4.70
519 523 0.595095 GGGATACTAGCCCGTACGTG 59.405 60.000 15.21 3.42 35.50 4.49
520 524 0.039708 GGATACTAGCCCGTACGTGC 60.040 60.000 15.23 15.23 0.00 5.34
521 525 0.950116 GATACTAGCCCGTACGTGCT 59.050 55.000 27.57 27.57 41.57 4.40
773 789 4.577246 GCGCCGCTGTAGCTAGCT 62.577 66.667 23.12 23.12 41.51 3.32
774 790 3.031495 CGCCGCTGTAGCTAGCTA 58.969 61.111 20.67 20.67 41.51 3.32
775 791 1.081774 CGCCGCTGTAGCTAGCTAG 60.082 63.158 24.78 16.83 41.51 3.42
795 811 6.325286 AGCTAGCTACTCCTAGTTAATTTGCT 59.675 38.462 17.69 0.00 37.66 3.91
815 831 3.318006 CTGCCTCAGCTGCTCTGCT 62.318 63.158 9.47 0.00 45.18 4.24
827 843 1.143684 TGCTCTGCTTCCAACCTCTTT 59.856 47.619 0.00 0.00 0.00 2.52
828 844 1.538950 GCTCTGCTTCCAACCTCTTTG 59.461 52.381 0.00 0.00 34.63 2.77
829 845 2.811873 GCTCTGCTTCCAACCTCTTTGA 60.812 50.000 0.00 0.00 37.39 2.69
830 846 3.072944 CTCTGCTTCCAACCTCTTTGAG 58.927 50.000 0.00 0.00 37.39 3.02
831 847 1.538950 CTGCTTCCAACCTCTTTGAGC 59.461 52.381 0.00 0.00 37.39 4.26
832 848 1.133823 TGCTTCCAACCTCTTTGAGCA 60.134 47.619 0.00 0.00 40.81 4.26
833 849 1.538950 GCTTCCAACCTCTTTGAGCAG 59.461 52.381 0.00 0.00 35.85 4.24
850 868 1.204941 GCAGCCTTCTTCTTCCTCGTA 59.795 52.381 0.00 0.00 0.00 3.43
857 875 4.499019 CCTTCTTCTTCCTCGTAGCTGATC 60.499 50.000 0.00 0.00 0.00 2.92
870 900 1.779092 AGCTGATCCCAGTGCCAATAT 59.221 47.619 0.00 0.00 42.35 1.28
878 908 7.168219 TGATCCCAGTGCCAATATAGAAATAC 58.832 38.462 0.00 0.00 0.00 1.89
883 913 6.207417 CCAGTGCCAATATAGAAATACAAGGG 59.793 42.308 0.00 0.00 0.00 3.95
901 931 0.820871 GGGATGAAGAGCTGACGACT 59.179 55.000 0.00 0.00 0.00 4.18
902 932 1.205893 GGGATGAAGAGCTGACGACTT 59.794 52.381 0.00 0.00 0.00 3.01
903 933 2.427453 GGGATGAAGAGCTGACGACTTA 59.573 50.000 0.00 0.00 0.00 2.24
908 938 3.439476 TGAAGAGCTGACGACTTAGTACC 59.561 47.826 0.00 0.00 0.00 3.34
913 943 2.351157 GCTGACGACTTAGTACCACGTT 60.351 50.000 0.00 0.00 37.32 3.99
915 945 4.293415 CTGACGACTTAGTACCACGTTTT 58.707 43.478 0.00 0.00 37.32 2.43
934 964 1.445582 GGTTTCTCGGATCACGCGT 60.446 57.895 5.58 5.58 43.86 6.01
937 967 3.982372 TTCTCGGATCACGCGTGCC 62.982 63.158 33.63 27.03 43.86 5.01
952 982 0.743345 GTGCCGCTTTAAGGTCGGAT 60.743 55.000 19.36 0.00 45.53 4.18
953 983 0.461339 TGCCGCTTTAAGGTCGGATC 60.461 55.000 19.36 7.49 45.53 3.36
974 1005 1.396594 GAGGAAGGGGAGGGAAGGA 59.603 63.158 0.00 0.00 0.00 3.36
976 1007 1.083141 GGAAGGGGAGGGAAGGAGT 59.917 63.158 0.00 0.00 0.00 3.85
978 1009 1.498264 GAAGGGGAGGGAAGGAGTAC 58.502 60.000 0.00 0.00 0.00 2.73
979 1010 1.008571 GAAGGGGAGGGAAGGAGTACT 59.991 57.143 0.00 0.00 0.00 2.73
981 1012 0.691413 GGGGAGGGAAGGAGTACTGG 60.691 65.000 0.00 0.00 0.00 4.00
993 1028 2.329379 GAGTACTGGTGAAGCTTCGTG 58.671 52.381 21.11 12.81 0.00 4.35
1033 1075 1.747745 GCCCGCCGTAACCATTTCT 60.748 57.895 0.00 0.00 0.00 2.52
1059 1101 4.634883 GCTGCTTCATCATTCTTCTTCAGA 59.365 41.667 0.00 0.00 0.00 3.27
1078 1120 3.438434 CAGATTCTGAGTCGAGTGTCAGA 59.562 47.826 14.99 14.99 45.94 3.27
1082 1124 1.876799 CTGAGTCGAGTGTCAGACTGT 59.123 52.381 12.13 0.00 46.52 3.55
1106 1148 4.268884 CAGCTAGTCTAACTCAAATTCGGC 59.731 45.833 0.00 0.00 0.00 5.54
1108 1150 3.314541 AGTCTAACTCAAATTCGGCGT 57.685 42.857 6.85 0.00 0.00 5.68
1121 1163 1.793258 TCGGCGTCGGTAAATTTGAA 58.207 45.000 10.62 0.00 36.95 2.69
1123 1165 1.461897 CGGCGTCGGTAAATTTGAACT 59.538 47.619 0.00 0.00 0.00 3.01
1128 1181 3.424433 CGTCGGTAAATTTGAACTGAGGC 60.424 47.826 0.00 0.00 32.15 4.70
1138 1191 1.968493 TGAACTGAGGCCGTAGAACTT 59.032 47.619 15.08 0.68 0.00 2.66
1139 1192 2.288825 TGAACTGAGGCCGTAGAACTTG 60.289 50.000 15.08 0.00 0.00 3.16
1140 1193 0.608640 ACTGAGGCCGTAGAACTTGG 59.391 55.000 15.08 0.00 0.00 3.61
1144 1197 2.740826 GCCGTAGAACTTGGCGCA 60.741 61.111 10.83 0.00 39.30 6.09
1158 1212 2.758089 GCGCAGTTGCTCCCATGAG 61.758 63.158 0.30 0.00 41.84 2.90
1202 1622 7.826260 AATTTTGCATTGACCCTAAATTACG 57.174 32.000 0.00 0.00 29.26 3.18
1203 1623 5.968528 TTTGCATTGACCCTAAATTACGT 57.031 34.783 0.00 0.00 0.00 3.57
1204 1624 7.450124 TTTTGCATTGACCCTAAATTACGTA 57.550 32.000 0.00 0.00 0.00 3.57
1212 1637 6.799512 TGACCCTAAATTACGTACTAAGCTC 58.200 40.000 0.00 0.00 0.00 4.09
1227 1652 1.072159 GCTCAGGCTGTTCAGGTGT 59.928 57.895 15.27 0.00 35.22 4.16
1246 1671 2.032634 GCACGCGGTTGAGAATCCA 61.033 57.895 12.47 0.00 0.00 3.41
1247 1672 1.369091 GCACGCGGTTGAGAATCCAT 61.369 55.000 12.47 0.00 0.00 3.41
1248 1673 1.086696 CACGCGGTTGAGAATCCATT 58.913 50.000 12.47 0.00 0.00 3.16
1249 1674 1.086696 ACGCGGTTGAGAATCCATTG 58.913 50.000 12.47 0.00 0.00 2.82
1279 1704 0.244721 CACGATCACTCTCAGCCACA 59.755 55.000 0.00 0.00 0.00 4.17
1283 1708 2.164422 CGATCACTCTCAGCCACAAGTA 59.836 50.000 0.00 0.00 0.00 2.24
1284 1709 3.181482 CGATCACTCTCAGCCACAAGTAT 60.181 47.826 0.00 0.00 0.00 2.12
1285 1710 3.876274 TCACTCTCAGCCACAAGTATC 57.124 47.619 0.00 0.00 0.00 2.24
1286 1711 3.165071 TCACTCTCAGCCACAAGTATCA 58.835 45.455 0.00 0.00 0.00 2.15
1314 1739 9.025041 TCACTCTTCTGATTAGTATTTCAGTCA 57.975 33.333 9.33 0.00 40.22 3.41
1315 1740 9.081997 CACTCTTCTGATTAGTATTTCAGTCAC 57.918 37.037 9.33 0.00 40.22 3.67
1316 1741 7.971168 ACTCTTCTGATTAGTATTTCAGTCACG 59.029 37.037 9.33 0.00 40.22 4.35
1317 1742 7.258441 TCTTCTGATTAGTATTTCAGTCACGG 58.742 38.462 9.33 0.00 40.22 4.94
1318 1743 6.525578 TCTGATTAGTATTTCAGTCACGGT 57.474 37.500 9.33 0.00 40.22 4.83
1319 1744 6.330278 TCTGATTAGTATTTCAGTCACGGTG 58.670 40.000 0.56 0.56 40.22 4.94
1320 1745 6.032956 TGATTAGTATTTCAGTCACGGTGT 57.967 37.500 8.17 0.00 0.00 4.16
1327 1752 3.631145 TTCAGTCACGGTGTAGTGTAC 57.369 47.619 8.17 0.00 42.40 2.90
1342 1771 0.323629 TGTACCTACACAGCCTTGCC 59.676 55.000 0.00 0.00 0.00 4.52
1349 1778 0.179029 ACACAGCCTTGCCGTTAACT 60.179 50.000 3.71 0.00 0.00 2.24
1353 1782 2.000447 CAGCCTTGCCGTTAACTACTC 59.000 52.381 3.71 0.00 0.00 2.59
1363 1792 4.741342 CCGTTAACTACTCGGACTGAATT 58.259 43.478 3.71 0.00 46.05 2.17
1365 1794 6.324819 CCGTTAACTACTCGGACTGAATTAA 58.675 40.000 3.71 0.00 46.05 1.40
1366 1795 6.976925 CCGTTAACTACTCGGACTGAATTAAT 59.023 38.462 3.71 0.00 46.05 1.40
1367 1796 7.043590 CCGTTAACTACTCGGACTGAATTAATG 60.044 40.741 3.71 0.00 46.05 1.90
1368 1797 7.043590 CGTTAACTACTCGGACTGAATTAATGG 60.044 40.741 3.71 0.00 0.00 3.16
1369 1798 6.540438 AACTACTCGGACTGAATTAATGGA 57.460 37.500 0.00 0.00 0.00 3.41
1370 1799 6.732896 ACTACTCGGACTGAATTAATGGAT 57.267 37.500 0.00 0.00 0.00 3.41
1371 1800 7.125792 ACTACTCGGACTGAATTAATGGATT 57.874 36.000 0.00 0.00 0.00 3.01
1372 1801 6.986817 ACTACTCGGACTGAATTAATGGATTG 59.013 38.462 0.00 0.00 0.00 2.67
1373 1802 5.989477 ACTCGGACTGAATTAATGGATTGA 58.011 37.500 0.00 0.00 0.00 2.57
1374 1803 6.595682 ACTCGGACTGAATTAATGGATTGAT 58.404 36.000 0.00 0.00 0.00 2.57
1375 1804 7.735917 ACTCGGACTGAATTAATGGATTGATA 58.264 34.615 0.00 0.00 0.00 2.15
1376 1805 7.875041 ACTCGGACTGAATTAATGGATTGATAG 59.125 37.037 0.00 0.00 0.00 2.08
1377 1806 6.650807 TCGGACTGAATTAATGGATTGATAGC 59.349 38.462 0.00 0.00 0.00 2.97
1378 1807 6.128172 CGGACTGAATTAATGGATTGATAGCC 60.128 42.308 0.00 0.00 0.00 3.93
1379 1808 6.944862 GGACTGAATTAATGGATTGATAGCCT 59.055 38.462 0.00 0.00 0.00 4.58
1380 1809 7.449704 GGACTGAATTAATGGATTGATAGCCTT 59.550 37.037 0.00 0.00 0.00 4.35
1381 1810 8.174733 ACTGAATTAATGGATTGATAGCCTTG 57.825 34.615 0.00 0.00 0.00 3.61
1382 1811 7.781693 ACTGAATTAATGGATTGATAGCCTTGT 59.218 33.333 0.00 0.00 0.00 3.16
1383 1812 8.537728 TGAATTAATGGATTGATAGCCTTGTT 57.462 30.769 0.00 0.00 0.00 2.83
1384 1813 8.415553 TGAATTAATGGATTGATAGCCTTGTTG 58.584 33.333 0.00 0.00 0.00 3.33
1385 1814 7.902920 ATTAATGGATTGATAGCCTTGTTGT 57.097 32.000 0.00 0.00 0.00 3.32
1386 1815 8.995027 ATTAATGGATTGATAGCCTTGTTGTA 57.005 30.769 0.00 0.00 0.00 2.41
1387 1816 6.699575 AATGGATTGATAGCCTTGTTGTAC 57.300 37.500 0.00 0.00 0.00 2.90
1388 1817 4.523083 TGGATTGATAGCCTTGTTGTACC 58.477 43.478 0.00 0.00 0.00 3.34
1389 1818 4.227300 TGGATTGATAGCCTTGTTGTACCT 59.773 41.667 0.00 0.00 0.00 3.08
1390 1819 5.427157 TGGATTGATAGCCTTGTTGTACCTA 59.573 40.000 0.00 0.00 0.00 3.08
1391 1820 5.758784 GGATTGATAGCCTTGTTGTACCTAC 59.241 44.000 0.00 0.00 0.00 3.18
1392 1821 5.748670 TTGATAGCCTTGTTGTACCTACA 57.251 39.130 0.00 0.00 0.00 2.74
1393 1822 5.080969 TGATAGCCTTGTTGTACCTACAC 57.919 43.478 0.00 0.00 35.64 2.90
1394 1823 4.528987 TGATAGCCTTGTTGTACCTACACA 59.471 41.667 0.00 0.00 35.64 3.72
1395 1824 3.849563 AGCCTTGTTGTACCTACACAA 57.150 42.857 0.00 0.00 35.64 3.33
1396 1825 3.740115 AGCCTTGTTGTACCTACACAAG 58.260 45.455 13.50 13.50 39.02 3.16
1397 1826 2.225727 GCCTTGTTGTACCTACACAAGC 59.774 50.000 14.43 7.64 40.22 4.01
1398 1827 3.740115 CCTTGTTGTACCTACACAAGCT 58.260 45.455 14.43 0.00 40.22 3.74
1399 1828 4.801581 GCCTTGTTGTACCTACACAAGCTA 60.802 45.833 14.43 0.00 40.22 3.32
1400 1829 4.929808 CCTTGTTGTACCTACACAAGCTAG 59.070 45.833 14.43 0.00 40.22 3.42
1401 1830 3.921677 TGTTGTACCTACACAAGCTAGC 58.078 45.455 6.62 6.62 39.02 3.42
1402 1831 3.576982 TGTTGTACCTACACAAGCTAGCT 59.423 43.478 12.68 12.68 39.02 3.32
1403 1832 3.868757 TGTACCTACACAAGCTAGCTG 57.131 47.619 20.16 14.74 0.00 4.24
1404 1833 2.094182 TGTACCTACACAAGCTAGCTGC 60.094 50.000 20.16 0.00 43.29 5.25
1405 1834 6.919728 TTGTACCTACACAAGCTAGCTGCG 62.920 50.000 20.16 15.28 40.54 5.18
1414 1843 3.436001 GCTAGCTGCGGACTAACAA 57.564 52.632 7.70 0.00 0.00 2.83
1415 1844 1.941325 GCTAGCTGCGGACTAACAAT 58.059 50.000 7.70 0.00 0.00 2.71
1416 1845 2.280628 GCTAGCTGCGGACTAACAATT 58.719 47.619 7.70 0.00 0.00 2.32
1417 1846 2.285488 GCTAGCTGCGGACTAACAATTC 59.715 50.000 7.70 0.00 0.00 2.17
1418 1847 1.359848 AGCTGCGGACTAACAATTCG 58.640 50.000 0.00 0.00 0.00 3.34
1419 1848 1.076332 GCTGCGGACTAACAATTCGT 58.924 50.000 0.00 0.00 0.00 3.85
1420 1849 1.201921 GCTGCGGACTAACAATTCGTG 60.202 52.381 0.00 0.00 0.00 4.35
1421 1850 0.793861 TGCGGACTAACAATTCGTGC 59.206 50.000 0.00 0.00 0.00 5.34
1422 1851 1.076332 GCGGACTAACAATTCGTGCT 58.924 50.000 0.00 0.00 0.00 4.40
1423 1852 1.201921 GCGGACTAACAATTCGTGCTG 60.202 52.381 0.00 0.00 0.00 4.41
1424 1853 2.333926 CGGACTAACAATTCGTGCTGA 58.666 47.619 0.00 0.00 0.00 4.26
1425 1854 2.734606 CGGACTAACAATTCGTGCTGAA 59.265 45.455 0.00 0.00 41.81 3.02
1439 1868 6.844696 TCGTGCTGAATTAATTGATCTACC 57.155 37.500 5.17 0.00 0.00 3.18
1440 1869 6.345298 TCGTGCTGAATTAATTGATCTACCA 58.655 36.000 5.17 0.00 0.00 3.25
1441 1870 6.821160 TCGTGCTGAATTAATTGATCTACCAA 59.179 34.615 5.17 0.00 0.00 3.67
1442 1871 7.498900 TCGTGCTGAATTAATTGATCTACCAAT 59.501 33.333 5.17 0.00 38.30 3.16
1443 1872 8.131100 CGTGCTGAATTAATTGATCTACCAATT 58.869 33.333 5.17 0.00 45.52 2.32
1444 1873 9.455847 GTGCTGAATTAATTGATCTACCAATTC 57.544 33.333 5.17 13.61 43.40 2.17
1445 1874 8.344831 TGCTGAATTAATTGATCTACCAATTCG 58.655 33.333 5.17 11.99 43.40 3.34
1446 1875 8.345565 GCTGAATTAATTGATCTACCAATTCGT 58.654 33.333 5.17 0.00 43.40 3.85
1447 1876 9.655769 CTGAATTAATTGATCTACCAATTCGTG 57.344 33.333 5.17 9.71 43.40 4.35
1448 1877 8.128582 TGAATTAATTGATCTACCAATTCGTGC 58.871 33.333 5.17 0.00 43.40 5.34
1449 1878 4.900635 AATTGATCTACCAATTCGTGCC 57.099 40.909 0.00 0.00 41.41 5.01
1450 1879 1.934589 TGATCTACCAATTCGTGCCG 58.065 50.000 0.00 0.00 0.00 5.69
1451 1880 1.217882 GATCTACCAATTCGTGCCGG 58.782 55.000 0.00 0.00 0.00 6.13
1452 1881 0.828022 ATCTACCAATTCGTGCCGGA 59.172 50.000 5.05 0.00 0.00 5.14
1453 1882 0.828022 TCTACCAATTCGTGCCGGAT 59.172 50.000 5.05 0.00 0.00 4.18
1454 1883 2.033372 TCTACCAATTCGTGCCGGATA 58.967 47.619 5.05 0.00 0.00 2.59
1455 1884 2.431419 TCTACCAATTCGTGCCGGATAA 59.569 45.455 5.05 0.00 0.00 1.75
1456 1885 2.116827 ACCAATTCGTGCCGGATAAA 57.883 45.000 5.05 0.00 0.00 1.40
1457 1886 2.438411 ACCAATTCGTGCCGGATAAAA 58.562 42.857 5.05 0.00 0.00 1.52
1458 1887 2.820787 ACCAATTCGTGCCGGATAAAAA 59.179 40.909 5.05 0.00 0.00 1.94
1479 1908 3.897141 AAAAGAGTAGAGCAGGCCTAC 57.103 47.619 3.98 0.00 37.38 3.18
1480 1909 2.838637 AAGAGTAGAGCAGGCCTACT 57.161 50.000 4.73 4.73 46.71 2.57
1481 1910 3.955524 AAGAGTAGAGCAGGCCTACTA 57.044 47.619 3.98 7.19 44.78 1.82
1482 1911 4.463050 AAGAGTAGAGCAGGCCTACTAT 57.537 45.455 3.98 4.74 44.78 2.12
1483 1912 3.761897 AGAGTAGAGCAGGCCTACTATG 58.238 50.000 10.56 0.00 44.78 2.23
1484 1913 2.230266 GAGTAGAGCAGGCCTACTATGC 59.770 54.545 10.56 9.02 44.78 3.14
1485 1914 1.964223 GTAGAGCAGGCCTACTATGCA 59.036 52.381 10.56 0.00 42.45 3.96
1486 1915 1.727062 AGAGCAGGCCTACTATGCAT 58.273 50.000 15.53 3.79 42.45 3.96
1487 1916 2.894731 AGAGCAGGCCTACTATGCATA 58.105 47.619 15.53 6.20 42.45 3.14
1488 1917 2.830923 AGAGCAGGCCTACTATGCATAG 59.169 50.000 28.38 28.38 42.45 2.23
1489 1918 2.564947 GAGCAGGCCTACTATGCATAGT 59.435 50.000 35.05 35.05 45.08 2.12
1490 1919 2.975489 AGCAGGCCTACTATGCATAGTT 59.025 45.455 37.12 23.51 43.06 2.24
1491 1920 3.392616 AGCAGGCCTACTATGCATAGTTT 59.607 43.478 37.12 20.50 43.06 2.66
1492 1921 4.593206 AGCAGGCCTACTATGCATAGTTTA 59.407 41.667 37.12 22.91 43.06 2.01
1493 1922 4.932200 GCAGGCCTACTATGCATAGTTTAG 59.068 45.833 37.12 28.99 43.06 1.85
1494 1923 5.511545 GCAGGCCTACTATGCATAGTTTAGT 60.512 44.000 37.12 21.66 43.06 2.24
1495 1924 5.928839 CAGGCCTACTATGCATAGTTTAGTG 59.071 44.000 37.12 24.81 43.06 2.74
1496 1925 5.012148 AGGCCTACTATGCATAGTTTAGTGG 59.988 44.000 37.12 28.77 43.06 4.00
1497 1926 4.691216 GCCTACTATGCATAGTTTAGTGGC 59.309 45.833 37.12 32.32 43.06 5.01
1498 1927 5.238583 CCTACTATGCATAGTTTAGTGGCC 58.761 45.833 37.12 0.00 43.06 5.36
1499 1928 5.012148 CCTACTATGCATAGTTTAGTGGCCT 59.988 44.000 37.12 15.92 43.06 5.19
1500 1929 5.373812 ACTATGCATAGTTTAGTGGCCTT 57.626 39.130 29.70 6.42 40.54 4.35
1501 1930 5.755849 ACTATGCATAGTTTAGTGGCCTTT 58.244 37.500 29.70 6.22 40.54 3.11
1502 1931 6.895782 ACTATGCATAGTTTAGTGGCCTTTA 58.104 36.000 29.70 0.00 40.54 1.85
1503 1932 7.518188 ACTATGCATAGTTTAGTGGCCTTTAT 58.482 34.615 29.70 5.19 40.54 1.40
1504 1933 6.639632 ATGCATAGTTTAGTGGCCTTTATG 57.360 37.500 3.32 3.21 0.00 1.90
1505 1934 5.505780 TGCATAGTTTAGTGGCCTTTATGT 58.494 37.500 3.32 0.00 0.00 2.29
1506 1935 5.356751 TGCATAGTTTAGTGGCCTTTATGTG 59.643 40.000 3.32 0.00 0.00 3.21
1507 1936 5.588648 GCATAGTTTAGTGGCCTTTATGTGA 59.411 40.000 3.32 0.00 0.00 3.58
1508 1937 6.238484 GCATAGTTTAGTGGCCTTTATGTGAG 60.238 42.308 3.32 0.00 0.00 3.51
1509 1938 5.242795 AGTTTAGTGGCCTTTATGTGAGT 57.757 39.130 3.32 0.00 0.00 3.41
1510 1939 5.631119 AGTTTAGTGGCCTTTATGTGAGTT 58.369 37.500 3.32 0.00 0.00 3.01
1511 1940 6.775708 AGTTTAGTGGCCTTTATGTGAGTTA 58.224 36.000 3.32 0.00 0.00 2.24
1512 1941 6.653740 AGTTTAGTGGCCTTTATGTGAGTTAC 59.346 38.462 3.32 0.00 0.00 2.50
1513 1942 4.634012 AGTGGCCTTTATGTGAGTTACA 57.366 40.909 3.32 0.00 44.87 2.41
1527 1956 7.827819 TGTGAGTTACATAGCAGAAATACAC 57.172 36.000 0.00 0.00 33.42 2.90
1528 1957 7.611770 TGTGAGTTACATAGCAGAAATACACT 58.388 34.615 0.00 0.00 33.42 3.55
1529 1958 8.094548 TGTGAGTTACATAGCAGAAATACACTT 58.905 33.333 0.00 0.00 33.42 3.16
1530 1959 8.383619 GTGAGTTACATAGCAGAAATACACTTG 58.616 37.037 0.00 0.00 0.00 3.16
1531 1960 7.549134 TGAGTTACATAGCAGAAATACACTTGG 59.451 37.037 0.00 0.00 0.00 3.61
1532 1961 6.823689 AGTTACATAGCAGAAATACACTTGGG 59.176 38.462 0.00 0.00 0.00 4.12
1533 1962 3.947834 ACATAGCAGAAATACACTTGGGC 59.052 43.478 0.00 0.00 0.00 5.36
1534 1963 2.584835 AGCAGAAATACACTTGGGCA 57.415 45.000 0.00 0.00 0.00 5.36
1535 1964 2.440409 AGCAGAAATACACTTGGGCAG 58.560 47.619 0.00 0.00 0.00 4.85
1536 1965 2.162681 GCAGAAATACACTTGGGCAGT 58.837 47.619 0.00 0.00 35.35 4.40
1547 1976 4.246458 CACTTGGGCAGTAACTAGAACTC 58.754 47.826 0.00 0.00 32.76 3.01
1567 1996 4.226427 TCAAGGAATGAGTGGATTCAGG 57.774 45.455 0.00 0.00 34.50 3.86
1573 2002 5.306678 AGGAATGAGTGGATTCAGGTAGATC 59.693 44.000 0.00 0.00 34.50 2.75
1640 2077 1.305633 CTGAGGCTGAGGGTGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
1641 2078 0.906756 CTGAGGCTGAGGGTGAGGAA 60.907 60.000 0.00 0.00 0.00 3.36
1652 2089 1.199615 GGTGAGGAAAGGAGGAGGAG 58.800 60.000 0.00 0.00 0.00 3.69
1656 2093 2.115427 GAGGAAAGGAGGAGGAGGAAG 58.885 57.143 0.00 0.00 0.00 3.46
1657 2094 1.725182 AGGAAAGGAGGAGGAGGAAGA 59.275 52.381 0.00 0.00 0.00 2.87
1658 2095 1.834896 GGAAAGGAGGAGGAGGAAGAC 59.165 57.143 0.00 0.00 0.00 3.01
1659 2096 1.478916 GAAAGGAGGAGGAGGAAGACG 59.521 57.143 0.00 0.00 0.00 4.18
1660 2097 0.973496 AAGGAGGAGGAGGAAGACGC 60.973 60.000 0.00 0.00 0.00 5.19
1661 2098 1.682684 GGAGGAGGAGGAAGACGCA 60.683 63.158 0.00 0.00 0.00 5.24
1662 2099 1.045911 GGAGGAGGAGGAAGACGCAT 61.046 60.000 0.00 0.00 0.00 4.73
1663 2100 0.103937 GAGGAGGAGGAAGACGCATG 59.896 60.000 0.00 0.00 0.00 4.06
1664 2101 0.616111 AGGAGGAGGAAGACGCATGT 60.616 55.000 0.00 0.00 0.00 3.21
1665 2102 1.112113 GGAGGAGGAAGACGCATGTA 58.888 55.000 0.00 0.00 0.00 2.29
1666 2103 1.689273 GGAGGAGGAAGACGCATGTAT 59.311 52.381 0.00 0.00 0.00 2.29
1667 2104 2.546795 GGAGGAGGAAGACGCATGTATG 60.547 54.545 0.00 0.00 0.00 2.39
1668 2105 2.101582 GAGGAGGAAGACGCATGTATGT 59.898 50.000 0.00 0.00 0.00 2.29
1669 2106 2.159043 AGGAGGAAGACGCATGTATGTG 60.159 50.000 4.00 4.00 43.60 3.21
1670 2107 1.594862 GAGGAAGACGCATGTATGTGC 59.405 52.381 5.39 0.00 41.81 4.57
1671 2108 1.066215 AGGAAGACGCATGTATGTGCA 60.066 47.619 5.39 0.00 45.30 4.57
1672 2109 1.942657 GGAAGACGCATGTATGTGCAT 59.057 47.619 5.39 0.00 45.30 3.96
1673 2110 2.286595 GGAAGACGCATGTATGTGCATG 60.287 50.000 6.70 6.70 45.30 4.06
1674 2111 2.028420 AGACGCATGTATGTGCATGT 57.972 45.000 11.73 0.00 45.75 3.21
1678 2115 3.883631 CGCATGTATGTGCATGTGTAT 57.116 42.857 14.04 0.00 46.43 2.29
1679 2116 3.547601 CGCATGTATGTGCATGTGTATG 58.452 45.455 14.04 0.00 46.43 2.39
1680 2117 3.002553 CGCATGTATGTGCATGTGTATGT 59.997 43.478 14.04 0.00 46.43 2.29
1681 2118 4.284485 GCATGTATGTGCATGTGTATGTG 58.716 43.478 11.73 0.00 45.75 3.21
1682 2119 4.201940 GCATGTATGTGCATGTGTATGTGT 60.202 41.667 11.73 0.00 45.75 3.72
1683 2120 5.007528 GCATGTATGTGCATGTGTATGTGTA 59.992 40.000 11.73 0.00 45.75 2.90
1684 2121 6.293571 GCATGTATGTGCATGTGTATGTGTAT 60.294 38.462 11.73 0.00 45.75 2.29
1685 2122 6.601741 TGTATGTGCATGTGTATGTGTATG 57.398 37.500 0.00 0.00 36.65 2.39
1686 2123 6.112058 TGTATGTGCATGTGTATGTGTATGT 58.888 36.000 0.00 0.00 36.65 2.29
1687 2124 4.943142 TGTGCATGTGTATGTGTATGTG 57.057 40.909 0.00 0.00 36.65 3.21
1688 2125 4.322567 TGTGCATGTGTATGTGTATGTGT 58.677 39.130 0.00 0.00 36.65 3.72
1709 2146 0.250684 TGTGTATGTGTGGTGGCAGG 60.251 55.000 0.00 0.00 0.00 4.85
1719 2156 0.178975 TGGTGGCAGGAAATTCCGTT 60.179 50.000 6.35 0.00 42.75 4.44
1720 2157 0.526211 GGTGGCAGGAAATTCCGTTC 59.474 55.000 6.35 0.87 42.75 3.95
1721 2158 0.526211 GTGGCAGGAAATTCCGTTCC 59.474 55.000 6.35 9.43 46.48 3.62
1741 2178 1.267732 CGTGAATCGATCTTGCTTGCC 60.268 52.381 0.00 0.00 42.86 4.52
1766 2203 1.213619 TGGGTTGGCTGGATGGATGA 61.214 55.000 0.00 0.00 0.00 2.92
1768 2205 1.105759 GGTTGGCTGGATGGATGAGC 61.106 60.000 0.00 0.00 0.00 4.26
1771 2208 0.179001 TGGCTGGATGGATGAGCATG 60.179 55.000 0.00 0.00 34.20 4.06
1772 2209 0.109913 GGCTGGATGGATGAGCATGA 59.890 55.000 0.00 0.00 34.20 3.07
1773 2210 1.271982 GGCTGGATGGATGAGCATGAT 60.272 52.381 0.00 0.00 34.20 2.45
1774 2211 2.026542 GGCTGGATGGATGAGCATGATA 60.027 50.000 0.00 0.00 34.20 2.15
1775 2212 3.371702 GGCTGGATGGATGAGCATGATAT 60.372 47.826 0.00 0.00 34.20 1.63
1776 2213 4.270834 GCTGGATGGATGAGCATGATATT 58.729 43.478 0.00 0.00 32.70 1.28
1818 2263 0.474854 TTGGCCTGGAGTGTCCCTTA 60.475 55.000 3.32 0.00 35.03 2.69
1850 2295 3.129502 CGGCTGGTGGATGCAGTG 61.130 66.667 0.00 0.00 0.00 3.66
2041 2492 9.362151 ACTCTAGCTAGCTACAGAAAATATCTT 57.638 33.333 27.68 4.96 35.73 2.40
2230 2702 0.323629 TTTGGTTCTCGGGCCAGTAG 59.676 55.000 4.39 0.10 36.00 2.57
2237 2709 0.389391 CTCGGGCCAGTAGTATGTGG 59.611 60.000 4.39 0.00 36.85 4.17
2239 2711 0.828022 CGGGCCAGTAGTATGTGGAA 59.172 55.000 4.39 0.00 35.67 3.53
2243 2715 4.386711 GGGCCAGTAGTATGTGGAAATAC 58.613 47.826 4.39 0.00 35.67 1.89
2367 2840 0.376152 CGAAATGCTAGTGCTGCTGG 59.624 55.000 0.00 0.00 40.48 4.85
2368 2841 0.737219 GAAATGCTAGTGCTGCTGGG 59.263 55.000 0.00 0.00 40.48 4.45
2369 2842 0.038744 AAATGCTAGTGCTGCTGGGT 59.961 50.000 0.00 0.00 40.48 4.51
2370 2843 0.679002 AATGCTAGTGCTGCTGGGTG 60.679 55.000 0.00 0.00 40.48 4.61
2371 2844 3.130160 GCTAGTGCTGCTGGGTGC 61.130 66.667 0.00 0.00 43.25 5.01
2372 2845 2.667418 CTAGTGCTGCTGGGTGCT 59.333 61.111 0.00 0.00 43.37 4.40
2373 2846 1.744368 CTAGTGCTGCTGGGTGCTG 60.744 63.158 0.00 0.00 43.37 4.41
2446 2936 4.309933 TGCTACTGTGTCTGATTCAGTTG 58.690 43.478 17.76 16.66 41.66 3.16
2533 3027 7.307930 CGCAGCATCCTAAATGTATGATAAACA 60.308 37.037 0.00 0.00 0.00 2.83
2544 3038 3.764885 ATGATAAACAGTTTCCGCTGC 57.235 42.857 0.48 0.00 39.96 5.25
2571 3076 9.277783 AGCCTTTAGTTGTATGATATGATCAAC 57.722 33.333 0.00 8.40 43.50 3.18
2573 3078 8.712363 CCTTTAGTTGTATGATATGATCAACGG 58.288 37.037 0.00 4.64 43.50 4.44
2590 3095 1.765904 ACGGTTTTCAGGGGCAAAATT 59.234 42.857 0.00 0.00 0.00 1.82
2605 3110 6.148315 GGGGCAAAATTCTTCTTCAATTTCTG 59.852 38.462 0.00 0.00 33.24 3.02
2655 3160 3.887110 TCTTCCCCCTTTTTCTTTTCGAC 59.113 43.478 0.00 0.00 0.00 4.20
2670 3175 6.341316 TCTTTTCGACTTGCTAGCTTGATAT 58.659 36.000 17.23 0.00 0.00 1.63
2700 3208 5.890985 AGTATGCTACCTAGATAGCTGATGG 59.109 44.000 17.23 0.00 46.54 3.51
2823 3334 3.090504 GGTCTTCAACCCCTCCTCT 57.909 57.895 0.00 0.00 42.85 3.69
2826 3337 1.078848 CTTCAACCCCTCCTCTGCG 60.079 63.158 0.00 0.00 0.00 5.18
3233 3748 2.216881 TCAAATCCACCATCCATCCCT 58.783 47.619 0.00 0.00 0.00 4.20
3240 3755 3.012730 TCCACCATCCATCCCTTTCAATT 59.987 43.478 0.00 0.00 0.00 2.32
3245 3760 5.536161 ACCATCCATCCCTTTCAATTTATCG 59.464 40.000 0.00 0.00 0.00 2.92
3266 3781 3.458189 GTCCTTCACGAAATCGATGGAT 58.542 45.455 10.16 0.00 43.02 3.41
3309 3825 3.952508 TGCAGCCGCTTCCTCCAA 61.953 61.111 0.00 0.00 39.64 3.53
3517 4033 3.077484 TCTCTTCTTTCCCCTTGCATG 57.923 47.619 0.00 0.00 0.00 4.06
4104 4622 5.826737 AGGGTAGAATTTCAGCATCTCATTG 59.173 40.000 0.00 0.00 0.00 2.82
4168 4686 1.688197 GGTATGGGCCATGGAAATGTG 59.312 52.381 29.14 0.00 0.00 3.21
4204 4722 4.507710 TGAAACCAAGAGATGAAGATCCG 58.492 43.478 0.00 0.00 0.00 4.18
4571 5096 9.900710 TTACACATTTATTACGCAATTTCACTT 57.099 25.926 0.00 0.00 0.00 3.16
4612 5137 9.569122 TCTTTAGCAAGTTTTACCTCTTTGTAT 57.431 29.630 0.00 0.00 0.00 2.29
4630 5155 9.709495 TCTTTGTATATTAACGGTTACACAGTT 57.291 29.630 0.00 0.00 39.67 3.16
4725 5250 5.147162 CAAAAGACTTATGCGTCACTTTCC 58.853 41.667 0.00 0.00 36.38 3.13
4773 5298 2.248248 AGGTCCTGAAACTGATCGTGA 58.752 47.619 0.00 0.00 0.00 4.35
4899 5424 1.760029 TCCGTGCCATGCAAGAGTATA 59.240 47.619 3.56 0.00 41.47 1.47
5141 5694 8.008513 TCCAACTTACTCTATACAATGGAGTC 57.991 38.462 8.92 0.00 46.49 3.36
5147 5700 6.095432 ACTCTATACAATGGAGTCTGCATC 57.905 41.667 7.37 0.00 46.49 3.91
5248 5801 2.279120 GTCCGAGATGCTGCCGAG 60.279 66.667 0.00 0.00 0.00 4.63
5270 5823 0.773644 AGAGGGTGTCATGCTGGTTT 59.226 50.000 0.00 0.00 0.00 3.27
5542 6102 6.822667 ACATTCTATTCTGTCAAATGCACA 57.177 33.333 0.00 0.00 31.96 4.57
5544 6104 7.660112 ACATTCTATTCTGTCAAATGCACAAA 58.340 30.769 0.00 0.00 31.96 2.83
5739 6299 4.361451 AAATATTGACGAGGCTGCAAAG 57.639 40.909 0.50 0.00 0.00 2.77
5804 6364 9.679661 TTCCAGCACTTCATCAAATTAGTATAA 57.320 29.630 0.00 0.00 0.00 0.98
6020 6582 8.692710 AGTCACTGGATGAAACTATCGTTATAA 58.307 33.333 0.00 0.00 39.72 0.98
6096 6658 0.040058 TCCACCCATGCATTCTGCTT 59.960 50.000 0.00 0.00 45.31 3.91
6231 6793 6.152932 TCGTGTTACTTCTTCTGTAGGTTT 57.847 37.500 0.00 0.00 0.00 3.27
6491 7053 4.202040 TGCCATGAAAGCGATGGATAAAAG 60.202 41.667 4.34 0.00 42.81 2.27
6723 7286 6.140303 ACATTGTATGCATCATTTCAGGTC 57.860 37.500 0.19 0.00 0.00 3.85
6812 7375 5.236655 TGATGAGTAAGCTTGTCTAGTCG 57.763 43.478 9.86 0.00 0.00 4.18
7047 7610 5.036737 CGAGTGACATTTTTGTTTCTGCTT 58.963 37.500 0.00 0.00 0.00 3.91
7175 7738 5.821470 AGATGCAGTCAGGTCATAATTCAAG 59.179 40.000 0.00 0.00 0.00 3.02
7249 7812 0.941463 CAGTCACAGGCGTGTCACTC 60.941 60.000 13.43 2.88 44.02 3.51
7375 7938 5.536161 ACTTGAATACTTGCATTGTCAAGGT 59.464 36.000 20.71 10.42 45.72 3.50
7376 7939 6.714810 ACTTGAATACTTGCATTGTCAAGGTA 59.285 34.615 20.71 11.84 45.72 3.08
7377 7940 7.394359 ACTTGAATACTTGCATTGTCAAGGTAT 59.606 33.333 20.71 12.93 45.72 2.73
7378 7941 8.800370 TTGAATACTTGCATTGTCAAGGTATA 57.200 30.769 18.54 8.07 45.72 1.47
7379 7942 8.800370 TGAATACTTGCATTGTCAAGGTATAA 57.200 30.769 18.54 5.44 45.72 0.98
7380 7943 8.673711 TGAATACTTGCATTGTCAAGGTATAAC 58.326 33.333 18.54 12.98 45.72 1.89
7381 7944 5.897377 ACTTGCATTGTCAAGGTATAACC 57.103 39.130 18.54 0.00 45.72 2.85
7382 7945 4.705023 ACTTGCATTGTCAAGGTATAACCC 59.295 41.667 18.54 0.00 45.72 4.11
7383 7946 3.626930 TGCATTGTCAAGGTATAACCCC 58.373 45.455 0.00 0.00 39.75 4.95
7384 7947 2.956333 GCATTGTCAAGGTATAACCCCC 59.044 50.000 0.00 0.00 39.75 5.40
7433 8208 5.125900 TCCCTTTGATTACATCACAGCATTG 59.874 40.000 0.00 0.00 39.39 2.82
7569 8344 4.202441 AGAGCTGGCATAATACAAGTTGG 58.798 43.478 7.96 0.00 0.00 3.77
7602 8377 6.598064 ACTGCTTATAAGGTGTCATGTTTACC 59.402 38.462 14.28 7.42 34.68 2.85
8173 8957 0.257328 TGGTCCTTGTGTTGCAGGAA 59.743 50.000 0.00 0.00 31.60 3.36
8261 9045 7.602644 TCCACTAACTATGCAGTTTCTTTGTAG 59.397 37.037 0.00 0.00 42.51 2.74
8269 9061 6.160664 TGCAGTTTCTTTGTAGTTATACGC 57.839 37.500 0.00 0.00 34.39 4.42
8291 9084 8.492673 ACGCTAATTCTAATGAAGTCATTTGA 57.507 30.769 11.58 11.97 43.48 2.69
8361 9154 3.137544 TCAGAGGTAAAACCAGGCAAAGA 59.862 43.478 0.00 0.00 41.95 2.52
8407 9200 1.592669 ATCAGATTTCCCGCGAGCG 60.593 57.895 8.23 10.86 39.44 5.03
8435 9230 4.034858 GGTACGGTAATTTAGAAAGCAGCC 59.965 45.833 0.00 0.00 0.00 4.85
8495 9292 3.126073 GACACGGAAAGTTTACTCGGTT 58.874 45.455 0.00 0.00 0.00 4.44
8496 9293 2.867975 ACACGGAAAGTTTACTCGGTTG 59.132 45.455 0.00 0.00 0.00 3.77
8498 9295 3.060070 CACGGAAAGTTTACTCGGTTGTC 60.060 47.826 0.00 0.00 0.00 3.18
8668 9475 2.168054 GGCACGGTAATGAACGCTT 58.832 52.632 0.00 0.00 0.00 4.68
8670 9477 1.733360 GGCACGGTAATGAACGCTTAA 59.267 47.619 0.00 0.00 0.00 1.85
8671 9478 2.222953 GGCACGGTAATGAACGCTTAAG 60.223 50.000 0.00 0.00 0.00 1.85
8674 9481 2.277084 CGGTAATGAACGCTTAAGCCT 58.723 47.619 21.53 9.13 37.91 4.58
8675 9482 3.119029 ACGGTAATGAACGCTTAAGCCTA 60.119 43.478 21.53 6.02 37.91 3.93
8676 9483 3.489785 CGGTAATGAACGCTTAAGCCTAG 59.510 47.826 21.53 10.36 37.91 3.02
8680 9497 3.160777 TGAACGCTTAAGCCTAGCTAC 57.839 47.619 21.53 7.09 38.25 3.58
8684 9501 2.622470 ACGCTTAAGCCTAGCTACCTAC 59.378 50.000 21.53 0.00 38.25 3.18
8704 9535 5.360714 CCTACCAATACCAAGCATTTGTGAT 59.639 40.000 0.00 0.00 32.21 3.06
8711 9542 5.382618 ACCAAGCATTTGTGATCTTCTTC 57.617 39.130 0.00 0.00 32.21 2.87
8718 9549 8.804912 AGCATTTGTGATCTTCTTCTAAAGAT 57.195 30.769 0.00 0.00 46.23 2.40
8726 9557 8.619546 GTGATCTTCTTCTAAAGATGAAATGGG 58.380 37.037 3.98 0.34 44.16 4.00
8727 9558 8.551440 TGATCTTCTTCTAAAGATGAAATGGGA 58.449 33.333 3.98 4.61 44.16 4.37
8731 9562 6.778821 TCTTCTAAAGATGAAATGGGACACA 58.221 36.000 0.00 0.00 34.35 3.72
8733 9564 7.256655 TCTTCTAAAGATGAAATGGGACACAGA 60.257 37.037 0.00 0.00 34.35 3.41
8744 9575 3.760738 TGGGACACAGATGTTTTATGCA 58.239 40.909 0.00 0.00 39.95 3.96
8749 9580 5.801947 GGACACAGATGTTTTATGCATGTTC 59.198 40.000 10.16 0.00 39.95 3.18
8783 9614 7.428282 AAACCAAAAACGAAATTTGTTCAGT 57.572 28.000 0.00 0.00 36.31 3.41
8784 9615 6.641176 ACCAAAAACGAAATTTGTTCAGTC 57.359 33.333 0.00 0.00 36.31 3.51
8786 9617 6.871492 ACCAAAAACGAAATTTGTTCAGTCTT 59.129 30.769 0.00 0.00 36.31 3.01
8787 9618 8.030106 ACCAAAAACGAAATTTGTTCAGTCTTA 58.970 29.630 0.00 0.00 36.31 2.10
8812 9648 8.409358 AATTAGCTAGCTAAATAATGGTTGGG 57.591 34.615 34.45 0.00 41.21 4.12
8813 9649 5.388599 AGCTAGCTAAATAATGGTTGGGT 57.611 39.130 17.69 0.00 0.00 4.51
8814 9650 5.133221 AGCTAGCTAAATAATGGTTGGGTG 58.867 41.667 17.69 0.00 0.00 4.61
8815 9651 5.104109 AGCTAGCTAAATAATGGTTGGGTGA 60.104 40.000 17.69 0.00 0.00 4.02
8816 9652 5.008712 GCTAGCTAAATAATGGTTGGGTGAC 59.991 44.000 7.70 0.00 0.00 3.67
8817 9653 5.193099 AGCTAAATAATGGTTGGGTGACT 57.807 39.130 0.00 0.00 0.00 3.41
8818 9654 4.949856 AGCTAAATAATGGTTGGGTGACTG 59.050 41.667 0.00 0.00 0.00 3.51
8819 9655 4.947388 GCTAAATAATGGTTGGGTGACTGA 59.053 41.667 0.00 0.00 0.00 3.41
8822 9658 6.933514 AAATAATGGTTGGGTGACTGATTT 57.066 33.333 0.00 0.00 0.00 2.17
8823 9659 5.920193 ATAATGGTTGGGTGACTGATTTG 57.080 39.130 0.00 0.00 0.00 2.32
8824 9660 2.746279 TGGTTGGGTGACTGATTTGT 57.254 45.000 0.00 0.00 0.00 2.83
8835 9671 4.562394 GTGACTGATTTGTTTTGTGTGTGG 59.438 41.667 0.00 0.00 0.00 4.17
8895 9731 1.554042 CTGTTTTCGGACGACGTGGG 61.554 60.000 4.58 0.00 44.69 4.61
8921 9757 2.613660 AATGGGCGATGCTGCTGCTA 62.614 55.000 17.00 3.79 40.48 3.49
8924 9760 3.634072 GCGATGCTGCTGCTACCG 61.634 66.667 17.00 16.28 40.48 4.02
8925 9761 3.634072 CGATGCTGCTGCTACCGC 61.634 66.667 17.00 0.00 40.48 5.68
8926 9762 2.202987 GATGCTGCTGCTACCGCT 60.203 61.111 17.00 0.00 40.48 5.52
9007 9843 1.334869 CCAAAGATGTATCTTGGCCGC 59.665 52.381 7.82 0.00 45.83 6.53
9032 9868 1.387756 GCTCAATCATGCGTGTTTTGC 59.612 47.619 5.68 7.17 0.00 3.68
9034 9870 2.659757 CTCAATCATGCGTGTTTTGCTG 59.340 45.455 5.68 4.84 0.00 4.41
9044 9892 2.222774 CGTGTTTTGCTGGCTGTTTTTG 60.223 45.455 0.00 0.00 0.00 2.44
9055 9903 2.032924 GGCTGTTTTTGCTGTTCGTACT 59.967 45.455 0.00 0.00 0.00 2.73
9074 9922 2.501723 ACTCGTACTTAGGACGGTAGGA 59.498 50.000 17.50 0.00 40.70 2.94
9227 10078 8.251721 ACAGAAATACTAGATAAAGCACGACTT 58.748 33.333 0.00 0.00 41.70 3.01
9272 10124 4.409570 CATGCGATTTGACAAAGAGAAGG 58.590 43.478 6.77 0.00 0.00 3.46
9279 10131 7.584987 CGATTTGACAAAGAGAAGGTAAACAT 58.415 34.615 6.77 0.00 0.00 2.71
9332 10184 9.199645 ACATATCTAGAGCAGACAATATAGCAT 57.800 33.333 0.00 0.00 35.62 3.79
9354 10206 7.532571 GCATGTTGCATATATGAAATAGAGCA 58.467 34.615 17.10 6.53 44.26 4.26
9462 10321 2.052047 CTGGACTTGGGGTCGGTGTT 62.052 60.000 0.00 0.00 45.35 3.32
9468 10327 1.990160 TTGGGGTCGGTGTTCTTGCT 61.990 55.000 0.00 0.00 0.00 3.91
9483 10342 0.245266 TTGCTAGCCATGTCGTCGAA 59.755 50.000 13.29 0.00 0.00 3.71
9517 10385 1.859427 CGGGGAAGAAGTCGTCGTCA 61.859 60.000 4.37 0.00 36.54 4.35
9522 10396 2.740981 GGAAGAAGTCGTCGTCAGAGTA 59.259 50.000 4.37 0.00 36.54 2.59
9582 10456 2.287103 GCGCTCCCTAAAAACCTTATCG 59.713 50.000 0.00 0.00 0.00 2.92
9596 10470 1.893801 CTTATCGCCCTTCTCCCGTAT 59.106 52.381 0.00 0.00 0.00 3.06
9682 10556 2.763448 GGATGAGGAAGACAGCAGTAGT 59.237 50.000 0.00 0.00 0.00 2.73
9720 10598 2.492484 GTGGCGAGAGGAAGAAGAAGTA 59.508 50.000 0.00 0.00 0.00 2.24
9744 10625 2.653726 GTGCATCTCTCTGAGAGGAGA 58.346 52.381 29.09 14.70 42.19 3.71
9828 10711 0.033090 GGGAGACGAAACGAACAGGT 59.967 55.000 0.00 0.00 0.00 4.00
9835 10718 1.797025 GAAACGAACAGGTAGCAGCT 58.203 50.000 0.00 0.00 0.00 4.24
9842 10727 0.912486 ACAGGTAGCAGCTAAAGGGG 59.088 55.000 2.87 0.00 0.00 4.79
9895 10784 1.640917 AACTTTCCAGCTCCCGAGTA 58.359 50.000 0.00 0.00 0.00 2.59
9910 10799 3.633986 CCCGAGTAACCTTTCGTATACCT 59.366 47.826 0.00 0.00 35.14 3.08
9938 10828 5.405269 GTGTGTGGCAAAAATTTAGACATCC 59.595 40.000 2.78 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 3.445805 TGTGACCATCTGCGTCTGTATTA 59.554 43.478 0.00 0.00 0.00 0.98
84 85 2.032550 GTGTATGCATGTGACCATCTGC 59.967 50.000 10.16 0.00 0.00 4.26
157 158 4.319177 ACTCTTTCAGTGGTATGACTTGC 58.681 43.478 0.00 0.00 32.26 4.01
167 168 1.199327 TCGACGCTACTCTTTCAGTGG 59.801 52.381 0.00 0.00 36.43 4.00
170 171 4.227538 TCTTTTCGACGCTACTCTTTCAG 58.772 43.478 0.00 0.00 0.00 3.02
182 183 9.541724 TCTGAATTTATTTCAATCTTTTCGACG 57.458 29.630 0.00 0.00 43.64 5.12
249 250 0.109458 TCGATGGAACTTGACCGACG 60.109 55.000 0.00 0.00 0.00 5.12
252 253 2.683968 TCTTTCGATGGAACTTGACCG 58.316 47.619 0.00 0.00 0.00 4.79
280 281 2.216898 GAATGAGCATAGCTGGGACAC 58.783 52.381 0.00 0.00 39.88 3.67
281 282 1.839354 TGAATGAGCATAGCTGGGACA 59.161 47.619 0.00 0.00 39.88 4.02
285 286 3.132160 CAGAGTGAATGAGCATAGCTGG 58.868 50.000 0.00 0.00 39.88 4.85
306 307 0.861837 CGACCGATGCAAGAATAGGC 59.138 55.000 0.00 0.00 0.00 3.93
310 311 0.249120 TGGTCGACCGATGCAAGAAT 59.751 50.000 28.70 0.00 39.43 2.40
392 393 1.059942 CGCTTTGTTTTGGCGGATTC 58.940 50.000 0.00 0.00 44.32 2.52
469 470 1.204146 TCTTGGCTACAGGTGGATCC 58.796 55.000 4.20 4.20 0.00 3.36
497 501 0.595095 GTACGGGCTAGTATCCCACG 59.405 60.000 9.73 0.00 44.11 4.94
519 523 0.601558 TTCCAGTCTGTCCACGTAGC 59.398 55.000 0.00 0.00 0.00 3.58
520 524 1.067776 GGTTCCAGTCTGTCCACGTAG 60.068 57.143 0.00 0.00 0.00 3.51
521 525 0.963962 GGTTCCAGTCTGTCCACGTA 59.036 55.000 0.00 0.00 0.00 3.57
552 556 3.507009 GAGGGAGACGACGACGGG 61.507 72.222 12.58 0.00 44.46 5.28
636 642 0.181350 CGGAGGGAGGAAGGAATTGG 59.819 60.000 0.00 0.00 0.00 3.16
770 786 6.325286 AGCAAATTAACTAGGAGTAGCTAGCT 59.675 38.462 23.12 23.12 0.00 3.32
773 789 6.098409 AGCAGCAAATTAACTAGGAGTAGCTA 59.902 38.462 0.00 0.00 0.00 3.32
774 790 5.104735 AGCAGCAAATTAACTAGGAGTAGCT 60.105 40.000 0.00 0.00 0.00 3.32
775 791 5.007136 CAGCAGCAAATTAACTAGGAGTAGC 59.993 44.000 0.00 0.00 0.00 3.58
776 792 5.007136 GCAGCAGCAAATTAACTAGGAGTAG 59.993 44.000 0.00 0.00 41.58 2.57
779 795 3.065925 GGCAGCAGCAAATTAACTAGGAG 59.934 47.826 2.65 0.00 44.61 3.69
780 796 3.016736 GGCAGCAGCAAATTAACTAGGA 58.983 45.455 2.65 0.00 44.61 2.94
781 797 3.019564 AGGCAGCAGCAAATTAACTAGG 58.980 45.455 2.65 0.00 44.61 3.02
815 831 1.609208 GCTGCTCAAAGAGGTTGGAA 58.391 50.000 0.00 0.00 37.85 3.53
827 843 1.277557 GAGGAAGAAGAAGGCTGCTCA 59.722 52.381 0.00 0.00 0.00 4.26
828 844 1.738700 CGAGGAAGAAGAAGGCTGCTC 60.739 57.143 0.00 0.00 0.00 4.26
829 845 0.248843 CGAGGAAGAAGAAGGCTGCT 59.751 55.000 0.00 0.00 0.00 4.24
830 846 0.036858 ACGAGGAAGAAGAAGGCTGC 60.037 55.000 0.00 0.00 0.00 5.25
831 847 2.737039 GCTACGAGGAAGAAGAAGGCTG 60.737 54.545 0.00 0.00 0.00 4.85
832 848 1.478916 GCTACGAGGAAGAAGAAGGCT 59.521 52.381 0.00 0.00 0.00 4.58
833 849 1.478916 AGCTACGAGGAAGAAGAAGGC 59.521 52.381 0.00 0.00 0.00 4.35
850 868 1.216064 TATTGGCACTGGGATCAGCT 58.784 50.000 0.00 0.00 44.59 4.24
857 875 6.207417 CCTTGTATTTCTATATTGGCACTGGG 59.793 42.308 0.00 0.00 0.00 4.45
870 900 5.667626 AGCTCTTCATCCCCTTGTATTTCTA 59.332 40.000 0.00 0.00 0.00 2.10
878 908 1.741732 CGTCAGCTCTTCATCCCCTTG 60.742 57.143 0.00 0.00 0.00 3.61
883 913 2.663826 AAGTCGTCAGCTCTTCATCC 57.336 50.000 0.00 0.00 0.00 3.51
908 938 2.546368 TGATCCGAGAAACCAAAACGTG 59.454 45.455 0.00 0.00 0.00 4.49
913 943 1.153353 GCGTGATCCGAGAAACCAAA 58.847 50.000 7.64 0.00 39.56 3.28
915 945 1.445410 CGCGTGATCCGAGAAACCA 60.445 57.895 0.00 0.00 38.82 3.67
934 964 0.461339 GATCCGACCTTAAAGCGGCA 60.461 55.000 1.45 0.00 44.45 5.69
937 967 2.987752 GGGATCCGACCTTAAAGCG 58.012 57.895 5.45 0.00 0.00 4.68
953 983 3.635869 TTCCCTCCCCTTCCTCGGG 62.636 68.421 0.00 0.00 44.27 5.14
958 989 0.342313 TACTCCTTCCCTCCCCTTCC 59.658 60.000 0.00 0.00 0.00 3.46
963 994 0.042881 ACCAGTACTCCTTCCCTCCC 59.957 60.000 0.00 0.00 0.00 4.30
974 1005 1.605712 GCACGAAGCTTCACCAGTACT 60.606 52.381 25.47 0.00 41.15 2.73
976 1007 3.210857 GCACGAAGCTTCACCAGTA 57.789 52.632 25.47 0.00 41.15 2.74
993 1028 0.449388 CTTTGGAAGCCATCGTCAGC 59.551 55.000 0.00 0.00 31.53 4.26
1033 1075 4.217836 AGAAGAATGATGAAGCAGCAGA 57.782 40.909 0.00 0.00 31.88 4.26
1059 1101 3.190327 CAGTCTGACACTCGACTCAGAAT 59.810 47.826 10.88 9.60 43.54 2.40
1078 1120 6.597832 ATTTGAGTTAGACTAGCTGACAGT 57.402 37.500 3.26 0.00 35.68 3.55
1082 1124 5.651530 CCGAATTTGAGTTAGACTAGCTGA 58.348 41.667 3.26 0.00 0.00 4.26
1095 1137 1.352114 TTACCGACGCCGAATTTGAG 58.648 50.000 0.00 0.00 38.22 3.02
1098 1140 3.188873 TCAAATTTACCGACGCCGAATTT 59.811 39.130 0.00 0.00 38.22 1.82
1106 1148 3.424433 GCCTCAGTTCAAATTTACCGACG 60.424 47.826 0.00 0.00 0.00 5.12
1108 1150 3.078837 GGCCTCAGTTCAAATTTACCGA 58.921 45.455 0.00 0.00 0.00 4.69
1121 1163 0.608640 CCAAGTTCTACGGCCTCAGT 59.391 55.000 0.00 0.00 0.00 3.41
1123 1165 1.295423 GCCAAGTTCTACGGCCTCA 59.705 57.895 0.00 0.00 40.07 3.86
1128 1181 0.949105 AACTGCGCCAAGTTCTACGG 60.949 55.000 4.18 0.00 35.44 4.02
1144 1197 5.700402 ATAAACTACTCATGGGAGCAACT 57.300 39.130 0.00 0.00 45.42 3.16
1187 1607 7.093814 TGAGCTTAGTACGTAATTTAGGGTCAA 60.094 37.037 17.03 7.66 30.21 3.18
1212 1637 1.526686 TGCACACCTGAACAGCCTG 60.527 57.895 0.00 0.00 0.00 4.85
1221 1646 4.312231 CAACCGCGTGCACACCTG 62.312 66.667 18.64 6.03 0.00 4.00
1227 1652 2.032634 GGATTCTCAACCGCGTGCA 61.033 57.895 4.92 0.00 0.00 4.57
1246 1671 3.935203 GTGATCGTGGTGAGTGAATCAAT 59.065 43.478 0.00 0.00 40.43 2.57
1247 1672 3.006859 AGTGATCGTGGTGAGTGAATCAA 59.993 43.478 0.00 0.00 40.43 2.57
1248 1673 2.562738 AGTGATCGTGGTGAGTGAATCA 59.437 45.455 0.00 0.00 34.79 2.57
1249 1674 3.119316 AGAGTGATCGTGGTGAGTGAATC 60.119 47.826 0.00 0.00 0.00 2.52
1253 1678 1.541588 TGAGAGTGATCGTGGTGAGTG 59.458 52.381 0.00 0.00 0.00 3.51
1259 1684 0.459237 GTGGCTGAGAGTGATCGTGG 60.459 60.000 0.00 0.00 0.00 4.94
1261 1686 0.969149 TTGTGGCTGAGAGTGATCGT 59.031 50.000 0.00 0.00 0.00 3.73
1306 1731 3.243501 GGTACACTACACCGTGACTGAAA 60.244 47.826 5.28 0.00 38.27 2.69
1308 1733 1.881973 GGTACACTACACCGTGACTGA 59.118 52.381 5.28 0.00 38.27 3.41
1309 1734 1.884579 AGGTACACTACACCGTGACTG 59.115 52.381 5.28 0.00 41.21 3.51
1310 1735 2.283145 AGGTACACTACACCGTGACT 57.717 50.000 5.28 0.00 41.21 3.41
1342 1771 7.043590 CCATTAATTCAGTCCGAGTAGTTAACG 60.044 40.741 0.00 0.00 0.00 3.18
1349 1778 7.119709 TCAATCCATTAATTCAGTCCGAGTA 57.880 36.000 0.00 0.00 0.00 2.59
1353 1782 6.128172 GGCTATCAATCCATTAATTCAGTCCG 60.128 42.308 0.00 0.00 0.00 4.79
1363 1792 6.770785 GGTACAACAAGGCTATCAATCCATTA 59.229 38.462 0.00 0.00 0.00 1.90
1365 1794 5.103940 AGGTACAACAAGGCTATCAATCCAT 60.104 40.000 0.00 0.00 0.00 3.41
1366 1795 4.227300 AGGTACAACAAGGCTATCAATCCA 59.773 41.667 0.00 0.00 0.00 3.41
1367 1796 4.781934 AGGTACAACAAGGCTATCAATCC 58.218 43.478 0.00 0.00 0.00 3.01
1368 1797 6.258068 GTGTAGGTACAACAAGGCTATCAATC 59.742 42.308 2.19 0.00 38.04 2.67
1369 1798 6.113411 GTGTAGGTACAACAAGGCTATCAAT 58.887 40.000 2.19 0.00 38.04 2.57
1370 1799 5.012251 TGTGTAGGTACAACAAGGCTATCAA 59.988 40.000 2.19 0.00 38.04 2.57
1371 1800 4.528987 TGTGTAGGTACAACAAGGCTATCA 59.471 41.667 2.19 0.00 38.04 2.15
1372 1801 5.080969 TGTGTAGGTACAACAAGGCTATC 57.919 43.478 2.19 0.00 38.04 2.08
1373 1802 5.488341 CTTGTGTAGGTACAACAAGGCTAT 58.512 41.667 16.27 0.00 39.21 2.97
1374 1803 4.801581 GCTTGTGTAGGTACAACAAGGCTA 60.802 45.833 21.43 1.83 40.92 3.93
1375 1804 3.740115 CTTGTGTAGGTACAACAAGGCT 58.260 45.455 16.27 0.00 39.21 4.58
1376 1805 2.225727 GCTTGTGTAGGTACAACAAGGC 59.774 50.000 21.43 13.73 40.92 4.35
1377 1806 3.740115 AGCTTGTGTAGGTACAACAAGG 58.260 45.455 21.43 9.75 40.92 3.61
1378 1807 4.389077 GCTAGCTTGTGTAGGTACAACAAG 59.611 45.833 7.70 18.30 42.03 3.16
1379 1808 4.039973 AGCTAGCTTGTGTAGGTACAACAA 59.960 41.667 12.68 2.99 38.04 2.83
1380 1809 3.576982 AGCTAGCTTGTGTAGGTACAACA 59.423 43.478 12.68 0.00 38.04 3.33
1381 1810 3.927142 CAGCTAGCTTGTGTAGGTACAAC 59.073 47.826 16.46 0.00 38.04 3.32
1382 1811 3.616560 GCAGCTAGCTTGTGTAGGTACAA 60.617 47.826 16.46 0.00 41.15 2.41
1383 1812 2.094182 GCAGCTAGCTTGTGTAGGTACA 60.094 50.000 16.46 0.00 41.15 2.90
1384 1813 2.541556 GCAGCTAGCTTGTGTAGGTAC 58.458 52.381 16.46 0.00 41.15 3.34
1385 1814 1.134367 CGCAGCTAGCTTGTGTAGGTA 59.866 52.381 16.46 0.00 42.61 3.08
1386 1815 0.108615 CGCAGCTAGCTTGTGTAGGT 60.109 55.000 16.46 0.00 42.61 3.08
1387 1816 0.807667 CCGCAGCTAGCTTGTGTAGG 60.808 60.000 16.46 9.28 42.61 3.18
1388 1817 0.173481 TCCGCAGCTAGCTTGTGTAG 59.827 55.000 16.46 3.53 42.61 2.74
1389 1818 0.108804 GTCCGCAGCTAGCTTGTGTA 60.109 55.000 16.46 1.69 42.61 2.90
1390 1819 1.374758 GTCCGCAGCTAGCTTGTGT 60.375 57.895 16.46 0.00 42.61 3.72
1391 1820 0.173481 TAGTCCGCAGCTAGCTTGTG 59.827 55.000 16.46 16.30 42.61 3.33
1392 1821 0.895530 TTAGTCCGCAGCTAGCTTGT 59.104 50.000 16.46 0.00 42.61 3.16
1393 1822 1.281899 GTTAGTCCGCAGCTAGCTTG 58.718 55.000 16.46 10.74 42.61 4.01
1394 1823 0.895530 TGTTAGTCCGCAGCTAGCTT 59.104 50.000 16.46 1.38 42.61 3.74
1395 1824 0.895530 TTGTTAGTCCGCAGCTAGCT 59.104 50.000 12.68 12.68 42.61 3.32
1396 1825 1.941325 ATTGTTAGTCCGCAGCTAGC 58.059 50.000 6.62 6.62 40.87 3.42
1397 1826 2.535984 CGAATTGTTAGTCCGCAGCTAG 59.464 50.000 0.00 0.00 0.00 3.42
1398 1827 2.094390 ACGAATTGTTAGTCCGCAGCTA 60.094 45.455 0.00 0.00 0.00 3.32
1399 1828 1.337823 ACGAATTGTTAGTCCGCAGCT 60.338 47.619 0.00 0.00 0.00 4.24
1400 1829 1.076332 ACGAATTGTTAGTCCGCAGC 58.924 50.000 0.00 0.00 0.00 5.25
1401 1830 1.201921 GCACGAATTGTTAGTCCGCAG 60.202 52.381 0.00 0.00 0.00 5.18
1402 1831 0.793861 GCACGAATTGTTAGTCCGCA 59.206 50.000 0.00 0.00 0.00 5.69
1403 1832 1.076332 AGCACGAATTGTTAGTCCGC 58.924 50.000 0.00 0.00 0.00 5.54
1404 1833 2.333926 TCAGCACGAATTGTTAGTCCG 58.666 47.619 0.00 0.00 0.00 4.79
1405 1834 4.946784 ATTCAGCACGAATTGTTAGTCC 57.053 40.909 0.00 0.00 41.83 3.85
1414 1843 7.498900 TGGTAGATCAATTAATTCAGCACGAAT 59.501 33.333 0.00 0.00 46.70 3.34
1415 1844 6.821160 TGGTAGATCAATTAATTCAGCACGAA 59.179 34.615 0.00 0.00 38.22 3.85
1416 1845 6.345298 TGGTAGATCAATTAATTCAGCACGA 58.655 36.000 0.00 0.00 0.00 4.35
1417 1846 6.603237 TGGTAGATCAATTAATTCAGCACG 57.397 37.500 0.00 0.00 0.00 5.34
1418 1847 9.455847 GAATTGGTAGATCAATTAATTCAGCAC 57.544 33.333 14.98 0.00 44.48 4.40
1419 1848 8.344831 CGAATTGGTAGATCAATTAATTCAGCA 58.655 33.333 17.70 0.00 44.48 4.41
1420 1849 8.345565 ACGAATTGGTAGATCAATTAATTCAGC 58.654 33.333 17.70 0.00 44.48 4.26
1421 1850 9.655769 CACGAATTGGTAGATCAATTAATTCAG 57.344 33.333 17.70 14.21 44.48 3.02
1422 1851 8.128582 GCACGAATTGGTAGATCAATTAATTCA 58.871 33.333 17.70 0.00 44.48 2.57
1423 1852 7.591426 GGCACGAATTGGTAGATCAATTAATTC 59.409 37.037 0.75 5.62 44.48 2.17
1424 1853 7.425606 GGCACGAATTGGTAGATCAATTAATT 58.574 34.615 0.75 0.00 44.48 1.40
1425 1854 6.970484 GGCACGAATTGGTAGATCAATTAAT 58.030 36.000 0.75 0.00 44.48 1.40
1426 1855 6.371809 GGCACGAATTGGTAGATCAATTAA 57.628 37.500 0.75 0.00 44.48 1.40
1428 1857 4.900635 GGCACGAATTGGTAGATCAATT 57.099 40.909 0.31 0.31 46.36 2.32
1458 1887 3.841255 AGTAGGCCTGCTCTACTCTTTTT 59.159 43.478 18.88 0.00 42.47 1.94
1459 1888 3.445987 AGTAGGCCTGCTCTACTCTTTT 58.554 45.455 18.88 0.00 42.47 2.27
1460 1889 3.108847 AGTAGGCCTGCTCTACTCTTT 57.891 47.619 18.88 0.00 42.47 2.52
1461 1890 2.838637 AGTAGGCCTGCTCTACTCTT 57.161 50.000 18.88 0.00 42.47 2.85
1462 1891 3.761897 CATAGTAGGCCTGCTCTACTCT 58.238 50.000 28.05 5.62 44.25 3.24
1463 1892 2.230266 GCATAGTAGGCCTGCTCTACTC 59.770 54.545 28.05 9.41 44.25 2.59
1464 1893 2.243810 GCATAGTAGGCCTGCTCTACT 58.756 52.381 28.05 18.24 46.27 2.57
1465 1894 1.964223 TGCATAGTAGGCCTGCTCTAC 59.036 52.381 28.05 17.05 37.84 2.59
1466 1895 2.381752 TGCATAGTAGGCCTGCTCTA 57.618 50.000 28.05 19.44 36.84 2.43
1467 1896 1.727062 ATGCATAGTAGGCCTGCTCT 58.273 50.000 28.05 15.31 36.84 4.09
1468 1897 2.564947 ACTATGCATAGTAGGCCTGCTC 59.435 50.000 33.00 13.75 41.55 4.26
1469 1898 2.614259 ACTATGCATAGTAGGCCTGCT 58.386 47.619 33.00 27.35 41.55 4.24
1470 1899 3.409026 AACTATGCATAGTAGGCCTGC 57.591 47.619 33.81 15.82 42.47 4.85
1471 1900 5.928839 CACTAAACTATGCATAGTAGGCCTG 59.071 44.000 33.81 21.94 42.47 4.85
1472 1901 5.012148 CCACTAAACTATGCATAGTAGGCCT 59.988 44.000 33.81 18.77 42.47 5.19
1473 1902 5.238583 CCACTAAACTATGCATAGTAGGCC 58.761 45.833 33.81 0.00 42.47 5.19
1474 1903 4.691216 GCCACTAAACTATGCATAGTAGGC 59.309 45.833 33.81 31.50 42.47 3.93
1475 1904 5.012148 AGGCCACTAAACTATGCATAGTAGG 59.988 44.000 33.81 27.80 42.47 3.18
1476 1905 6.102897 AGGCCACTAAACTATGCATAGTAG 57.897 41.667 33.81 29.11 42.47 2.57
1477 1906 6.494666 AAGGCCACTAAACTATGCATAGTA 57.505 37.500 33.81 21.11 42.47 1.82
1478 1907 5.373812 AAGGCCACTAAACTATGCATAGT 57.626 39.130 29.70 29.70 45.04 2.12
1479 1908 7.445402 ACATAAAGGCCACTAAACTATGCATAG 59.555 37.037 28.38 28.38 36.46 2.23
1480 1909 7.228507 CACATAAAGGCCACTAAACTATGCATA 59.771 37.037 5.01 6.20 0.00 3.14
1481 1910 6.039717 CACATAAAGGCCACTAAACTATGCAT 59.960 38.462 5.01 3.79 0.00 3.96
1482 1911 5.356751 CACATAAAGGCCACTAAACTATGCA 59.643 40.000 5.01 0.00 0.00 3.96
1483 1912 5.588648 TCACATAAAGGCCACTAAACTATGC 59.411 40.000 5.01 0.00 0.00 3.14
1484 1913 6.823689 ACTCACATAAAGGCCACTAAACTATG 59.176 38.462 5.01 3.57 0.00 2.23
1485 1914 6.958767 ACTCACATAAAGGCCACTAAACTAT 58.041 36.000 5.01 0.00 0.00 2.12
1486 1915 6.368779 ACTCACATAAAGGCCACTAAACTA 57.631 37.500 5.01 0.00 0.00 2.24
1487 1916 5.242795 ACTCACATAAAGGCCACTAAACT 57.757 39.130 5.01 0.00 0.00 2.66
1488 1917 5.959618 AACTCACATAAAGGCCACTAAAC 57.040 39.130 5.01 0.00 0.00 2.01
1489 1918 6.535540 TGTAACTCACATAAAGGCCACTAAA 58.464 36.000 5.01 0.00 30.04 1.85
1490 1919 6.116711 TGTAACTCACATAAAGGCCACTAA 57.883 37.500 5.01 0.00 30.04 2.24
1491 1920 5.748670 TGTAACTCACATAAAGGCCACTA 57.251 39.130 5.01 0.00 30.04 2.74
1492 1921 4.634012 TGTAACTCACATAAAGGCCACT 57.366 40.909 5.01 0.00 30.04 4.00
1493 1922 5.007724 GCTATGTAACTCACATAAAGGCCAC 59.992 44.000 5.01 0.00 46.92 5.01
1494 1923 5.123227 GCTATGTAACTCACATAAAGGCCA 58.877 41.667 5.01 0.00 46.92 5.36
1495 1924 5.123227 TGCTATGTAACTCACATAAAGGCC 58.877 41.667 0.00 0.00 46.92 5.19
1496 1925 6.049149 TCTGCTATGTAACTCACATAAAGGC 58.951 40.000 0.00 0.89 46.92 4.35
1497 1926 8.492673 TTTCTGCTATGTAACTCACATAAAGG 57.507 34.615 0.00 0.00 46.92 3.11
1501 1930 9.529325 GTGTATTTCTGCTATGTAACTCACATA 57.471 33.333 0.00 0.00 46.34 2.29
1503 1932 7.611770 AGTGTATTTCTGCTATGTAACTCACA 58.388 34.615 0.00 0.00 42.69 3.58
1504 1933 8.383619 CAAGTGTATTTCTGCTATGTAACTCAC 58.616 37.037 0.00 0.00 0.00 3.51
1505 1934 7.549134 CCAAGTGTATTTCTGCTATGTAACTCA 59.451 37.037 0.00 0.00 0.00 3.41
1506 1935 7.011482 CCCAAGTGTATTTCTGCTATGTAACTC 59.989 40.741 0.00 0.00 0.00 3.01
1507 1936 6.823689 CCCAAGTGTATTTCTGCTATGTAACT 59.176 38.462 0.00 0.00 0.00 2.24
1508 1937 6.458342 GCCCAAGTGTATTTCTGCTATGTAAC 60.458 42.308 0.00 0.00 0.00 2.50
1509 1938 5.588648 GCCCAAGTGTATTTCTGCTATGTAA 59.411 40.000 0.00 0.00 0.00 2.41
1510 1939 5.123227 GCCCAAGTGTATTTCTGCTATGTA 58.877 41.667 0.00 0.00 0.00 2.29
1511 1940 3.947834 GCCCAAGTGTATTTCTGCTATGT 59.052 43.478 0.00 0.00 0.00 2.29
1512 1941 3.947196 TGCCCAAGTGTATTTCTGCTATG 59.053 43.478 0.00 0.00 0.00 2.23
1513 1942 4.202441 CTGCCCAAGTGTATTTCTGCTAT 58.798 43.478 0.00 0.00 0.00 2.97
1514 1943 3.009033 ACTGCCCAAGTGTATTTCTGCTA 59.991 43.478 0.00 0.00 37.88 3.49
1515 1944 2.224867 ACTGCCCAAGTGTATTTCTGCT 60.225 45.455 0.00 0.00 37.88 4.24
1516 1945 2.162681 ACTGCCCAAGTGTATTTCTGC 58.837 47.619 0.00 0.00 37.88 4.26
1517 1946 5.003804 AGTTACTGCCCAAGTGTATTTCTG 58.996 41.667 0.00 0.00 40.26 3.02
1518 1947 5.242795 AGTTACTGCCCAAGTGTATTTCT 57.757 39.130 0.00 0.00 40.26 2.52
1519 1948 6.403878 TCTAGTTACTGCCCAAGTGTATTTC 58.596 40.000 0.00 0.00 40.26 2.17
1520 1949 6.368779 TCTAGTTACTGCCCAAGTGTATTT 57.631 37.500 0.00 0.00 40.26 1.40
1521 1950 6.013639 AGTTCTAGTTACTGCCCAAGTGTATT 60.014 38.462 0.00 0.00 40.26 1.89
1522 1951 5.484290 AGTTCTAGTTACTGCCCAAGTGTAT 59.516 40.000 0.00 0.00 40.26 2.29
1523 1952 4.836736 AGTTCTAGTTACTGCCCAAGTGTA 59.163 41.667 0.00 0.00 40.26 2.90
1524 1953 3.646637 AGTTCTAGTTACTGCCCAAGTGT 59.353 43.478 0.00 0.00 40.26 3.55
1525 1954 4.246458 GAGTTCTAGTTACTGCCCAAGTG 58.754 47.826 0.00 0.00 40.26 3.16
1526 1955 3.901844 TGAGTTCTAGTTACTGCCCAAGT 59.098 43.478 0.00 0.00 43.40 3.16
1527 1956 4.537135 TGAGTTCTAGTTACTGCCCAAG 57.463 45.455 0.00 0.00 0.00 3.61
1528 1957 4.262894 CCTTGAGTTCTAGTTACTGCCCAA 60.263 45.833 0.00 3.79 0.00 4.12
1529 1958 3.260884 CCTTGAGTTCTAGTTACTGCCCA 59.739 47.826 0.00 0.00 0.00 5.36
1530 1959 3.514309 TCCTTGAGTTCTAGTTACTGCCC 59.486 47.826 0.00 0.00 0.00 5.36
1531 1960 4.803098 TCCTTGAGTTCTAGTTACTGCC 57.197 45.455 0.00 0.00 0.00 4.85
1532 1961 6.398918 TCATTCCTTGAGTTCTAGTTACTGC 58.601 40.000 0.00 0.00 0.00 4.40
1547 1976 3.960571 ACCTGAATCCACTCATTCCTTG 58.039 45.455 0.00 0.00 32.51 3.61
1557 1986 4.487714 TGGTTGATCTACCTGAATCCAC 57.512 45.455 23.96 0.00 39.04 4.02
1560 1989 6.127897 CCACTTTTGGTTGATCTACCTGAATC 60.128 42.308 23.96 0.71 38.23 2.52
1567 1996 5.863935 GCATTTCCACTTTTGGTTGATCTAC 59.136 40.000 0.00 0.00 44.35 2.59
1573 2002 3.937706 TGTTGCATTTCCACTTTTGGTTG 59.062 39.130 0.00 0.00 44.35 3.77
1640 2077 1.562783 CGTCTTCCTCCTCCTCCTTT 58.437 55.000 0.00 0.00 0.00 3.11
1641 2078 0.973496 GCGTCTTCCTCCTCCTCCTT 60.973 60.000 0.00 0.00 0.00 3.36
1661 2098 6.767423 ACATACACATACACATGCACATACAT 59.233 34.615 0.00 0.00 35.39 2.29
1662 2099 6.036953 CACATACACATACACATGCACATACA 59.963 38.462 0.00 0.00 35.39 2.29
1663 2100 6.037062 ACACATACACATACACATGCACATAC 59.963 38.462 0.00 0.00 35.39 2.39
1664 2101 6.112058 ACACATACACATACACATGCACATA 58.888 36.000 0.00 0.00 35.39 2.29
1665 2102 4.943093 ACACATACACATACACATGCACAT 59.057 37.500 0.00 0.00 35.39 3.21
1666 2103 4.322567 ACACATACACATACACATGCACA 58.677 39.130 0.00 0.00 35.39 4.57
1667 2104 4.944962 ACACATACACATACACATGCAC 57.055 40.909 0.00 0.00 35.39 4.57
1668 2105 6.036953 CACATACACATACACATACACATGCA 59.963 38.462 0.00 0.00 35.39 3.96
1669 2106 6.037062 ACACATACACATACACATACACATGC 59.963 38.462 0.00 0.00 35.39 4.06
1670 2107 7.538303 ACACATACACATACACATACACATG 57.462 36.000 0.00 0.00 38.21 3.21
1671 2108 9.260002 CATACACATACACATACACATACACAT 57.740 33.333 0.00 0.00 0.00 3.21
1672 2109 8.254508 ACATACACATACACATACACATACACA 58.745 33.333 0.00 0.00 0.00 3.72
1673 2110 8.539674 CACATACACATACACATACACATACAC 58.460 37.037 0.00 0.00 0.00 2.90
1674 2111 8.254508 ACACATACACATACACATACACATACA 58.745 33.333 0.00 0.00 0.00 2.29
1675 2112 8.539674 CACACATACACATACACATACACATAC 58.460 37.037 0.00 0.00 0.00 2.39
1676 2113 7.708752 CCACACATACACATACACATACACATA 59.291 37.037 0.00 0.00 0.00 2.29
1677 2114 6.538381 CCACACATACACATACACATACACAT 59.462 38.462 0.00 0.00 0.00 3.21
1678 2115 5.872070 CCACACATACACATACACATACACA 59.128 40.000 0.00 0.00 0.00 3.72
1679 2116 5.872617 ACCACACATACACATACACATACAC 59.127 40.000 0.00 0.00 0.00 2.90
1680 2117 5.872070 CACCACACATACACATACACATACA 59.128 40.000 0.00 0.00 0.00 2.29
1681 2118 5.293324 CCACCACACATACACATACACATAC 59.707 44.000 0.00 0.00 0.00 2.39
1682 2119 5.423886 CCACCACACATACACATACACATA 58.576 41.667 0.00 0.00 0.00 2.29
1683 2120 4.260985 CCACCACACATACACATACACAT 58.739 43.478 0.00 0.00 0.00 3.21
1684 2121 3.669536 CCACCACACATACACATACACA 58.330 45.455 0.00 0.00 0.00 3.72
1685 2122 2.418628 GCCACCACACATACACATACAC 59.581 50.000 0.00 0.00 0.00 2.90
1686 2123 2.039084 TGCCACCACACATACACATACA 59.961 45.455 0.00 0.00 0.00 2.29
1687 2124 2.677836 CTGCCACCACACATACACATAC 59.322 50.000 0.00 0.00 0.00 2.39
1688 2125 2.355615 CCTGCCACCACACATACACATA 60.356 50.000 0.00 0.00 0.00 2.29
1719 2156 2.270923 CAAGCAAGATCGATTCACGGA 58.729 47.619 0.00 0.00 42.82 4.69
1720 2157 1.267732 GCAAGCAAGATCGATTCACGG 60.268 52.381 0.00 0.00 42.82 4.94
1721 2158 1.267732 GGCAAGCAAGATCGATTCACG 60.268 52.381 0.00 0.00 44.09 4.35
1741 2178 0.032813 ATCCAGCCAACCCAATGGAG 60.033 55.000 0.00 0.00 44.67 3.86
1766 2203 5.071384 TCTCATCCACACAGAATATCATGCT 59.929 40.000 0.00 0.00 0.00 3.79
1768 2205 6.285990 TGTCTCATCCACACAGAATATCATG 58.714 40.000 0.00 0.00 0.00 3.07
1771 2208 5.069648 TCCTGTCTCATCCACACAGAATATC 59.930 44.000 0.00 0.00 40.07 1.63
1772 2209 4.964897 TCCTGTCTCATCCACACAGAATAT 59.035 41.667 0.00 0.00 40.07 1.28
1773 2210 4.160439 GTCCTGTCTCATCCACACAGAATA 59.840 45.833 0.00 0.00 40.07 1.75
1774 2211 3.055530 GTCCTGTCTCATCCACACAGAAT 60.056 47.826 0.00 0.00 40.07 2.40
1775 2212 2.300152 GTCCTGTCTCATCCACACAGAA 59.700 50.000 0.00 0.00 40.07 3.02
1776 2213 1.895798 GTCCTGTCTCATCCACACAGA 59.104 52.381 0.00 0.00 40.07 3.41
1850 2295 2.289320 TGAAGAGAGGAGAAAGCACAGC 60.289 50.000 0.00 0.00 0.00 4.40
2011 2462 3.472652 TCTGTAGCTAGCTAGAGTGAGC 58.527 50.000 35.15 19.64 39.85 4.26
2041 2492 1.767036 CCCATCCCAGTGGTTGACA 59.233 57.895 8.74 0.00 37.57 3.58
2237 2709 7.923888 TGTCGTACTACATACTGGAGTATTTC 58.076 38.462 2.70 0.00 44.86 2.17
2239 2711 6.485984 CCTGTCGTACTACATACTGGAGTATT 59.514 42.308 0.06 0.00 44.86 1.89
2243 2715 3.003482 GCCTGTCGTACTACATACTGGAG 59.997 52.174 14.23 0.00 34.00 3.86
2421 2911 3.329386 TGAATCAGACACAGTAGCAAGC 58.671 45.455 0.00 0.00 0.00 4.01
2446 2936 2.614057 CGTGGGCTTCTGAATTATCACC 59.386 50.000 0.00 0.00 0.00 4.02
2533 3027 0.250727 TAAAGGCTGCAGCGGAAACT 60.251 50.000 31.19 19.59 43.26 2.66
2544 3038 8.837788 TGATCATATCATACAACTAAAGGCTG 57.162 34.615 0.00 0.00 33.59 4.85
2571 3076 2.037121 AGAATTTTGCCCCTGAAAACCG 59.963 45.455 0.00 0.00 0.00 4.44
2573 3078 4.960938 AGAAGAATTTTGCCCCTGAAAAC 58.039 39.130 0.00 0.00 0.00 2.43
2590 3095 6.205464 AGCAATTCGACAGAAATTGAAGAAGA 59.795 34.615 10.26 0.00 40.15 2.87
2605 3110 3.372206 ACATGTCAAGCTAGCAATTCGAC 59.628 43.478 18.83 14.80 0.00 4.20
2632 3137 4.340097 GTCGAAAAGAAAAAGGGGGAAGAA 59.660 41.667 0.00 0.00 0.00 2.52
2634 3139 3.889538 AGTCGAAAAGAAAAAGGGGGAAG 59.110 43.478 0.00 0.00 0.00 3.46
2637 3142 3.798889 GCAAGTCGAAAAGAAAAAGGGGG 60.799 47.826 0.00 0.00 0.00 5.40
2655 3160 6.095432 ACTCCACTATATCAAGCTAGCAAG 57.905 41.667 18.83 8.87 0.00 4.01
2670 3175 6.416415 GCTATCTAGGTAGCATACTCCACTA 58.584 44.000 26.83 0.00 45.03 2.74
2700 3208 0.889186 CTGCCACCACCACCACTTAC 60.889 60.000 0.00 0.00 0.00 2.34
3245 3760 2.888594 TCCATCGATTTCGTGAAGGAC 58.111 47.619 0.00 0.00 40.80 3.85
3254 3769 4.741676 GCCACATTCAAATCCATCGATTTC 59.258 41.667 0.00 0.00 45.08 2.17
3266 3781 4.689812 GCACATACAATTGCCACATTCAAA 59.310 37.500 5.05 0.00 32.21 2.69
3491 4007 0.698818 GGGGAAAGAAGAGAAGGGCA 59.301 55.000 0.00 0.00 0.00 5.36
3517 4033 7.316640 AGATATATGTCTAATTCGTGGCACTC 58.683 38.462 16.72 0.16 0.00 3.51
3745 4262 7.885297 TGTTTTTCTCTTCAATATGGAACCAG 58.115 34.615 0.00 0.00 0.00 4.00
4104 4622 5.627499 TGAATAAGACAACAGGAACATGC 57.373 39.130 0.00 0.00 0.00 4.06
4168 4686 4.320608 TGGTTTCAGCATGTTCTTTTCC 57.679 40.909 0.00 0.00 37.40 3.13
4204 4722 5.871524 TCTTTCATCATCACTGTCAAGTAGC 59.128 40.000 0.00 0.00 33.79 3.58
4336 4854 8.854614 ATCTTACAATAGGATTATCTGGCAAC 57.145 34.615 0.00 0.00 0.00 4.17
4494 5019 4.764050 TCCCAATATTTCTTCACGGCTA 57.236 40.909 0.00 0.00 0.00 3.93
4571 5096 6.832520 TGCTAAAGATTAGAAAACCATGCA 57.167 33.333 0.00 0.00 0.00 3.96
4725 5250 1.079543 CTGCGAGGAGGACCAACAG 60.080 63.158 0.00 0.00 38.94 3.16
4773 5298 6.995091 GGCATCTCTAATTTTCCTCACTGTAT 59.005 38.462 0.00 0.00 0.00 2.29
4899 5424 6.588756 CAGCAGTATTGAACAGAAATTGCATT 59.411 34.615 0.00 0.00 0.00 3.56
5147 5700 9.582431 AGTCAAAATTGATGCATCTCAAATTAG 57.418 29.630 26.32 17.71 38.55 1.73
5248 5801 1.271597 ACCAGCATGACACCCTCTTTC 60.272 52.381 0.00 0.00 39.69 2.62
5512 6072 6.951256 TTGACAGAATAGAATGTTGACTCG 57.049 37.500 0.00 0.00 0.00 4.18
5564 6124 8.987890 AGAAAATTGCCATAACATGTTTTGTAC 58.012 29.630 22.32 16.11 37.68 2.90
5615 6175 2.488153 GTGGTCAAGTTGGCTTATCCAC 59.512 50.000 7.52 10.34 46.55 4.02
5739 6299 4.706962 ACCAAATTAGCATCTGGAAGTTCC 59.293 41.667 15.50 15.50 36.96 3.62
5828 6389 2.600731 GATGACTGTCAGAACTCCACG 58.399 52.381 16.46 0.00 0.00 4.94
5887 6448 4.873259 GGCTTTGGCAAAACTACTTTTGAA 59.127 37.500 14.43 0.00 46.43 2.69
5978 6540 6.209192 TCCAGTGACTTTAAAATGACATGCAT 59.791 34.615 0.00 0.00 39.43 3.96
6020 6582 5.243954 GGCACCCAAATCTCTAGTTTCTTTT 59.756 40.000 0.00 0.00 0.00 2.27
6096 6658 8.375506 ACTGTTCTGTAATGGACTGAATTCTTA 58.624 33.333 7.05 0.00 44.76 2.10
6231 6793 3.117701 TCAATGTTTTCTCCACCCTCACA 60.118 43.478 0.00 0.00 0.00 3.58
6764 7327 8.256611 AGATGATTACACATGAACAAGTACAC 57.743 34.615 0.00 0.00 0.00 2.90
6812 7375 7.625828 ACTTGGACCTATGTTAAATGTTAGC 57.374 36.000 0.00 0.00 0.00 3.09
7052 7615 7.870509 ACATATATGTGTCTTTGTCTGCAAT 57.129 32.000 17.60 0.00 40.03 3.56
7175 7738 8.704234 CGACCAGATCTAAGAATAATAAACAGC 58.296 37.037 0.00 0.00 0.00 4.40
7249 7812 3.210227 GGACAAAACCCCAAAACAATGG 58.790 45.455 0.00 0.00 40.35 3.16
7388 7951 4.832823 GGAGTTTCATTGGTATATTGGGGG 59.167 45.833 0.00 0.00 0.00 5.40
7389 7952 4.832823 GGGAGTTTCATTGGTATATTGGGG 59.167 45.833 0.00 0.00 0.00 4.96
7390 7953 5.705400 AGGGAGTTTCATTGGTATATTGGG 58.295 41.667 0.00 0.00 0.00 4.12
7391 7954 7.341769 TCAAAGGGAGTTTCATTGGTATATTGG 59.658 37.037 0.00 0.00 0.00 3.16
7392 7955 8.292444 TCAAAGGGAGTTTCATTGGTATATTG 57.708 34.615 0.00 0.00 0.00 1.90
7393 7956 9.492730 AATCAAAGGGAGTTTCATTGGTATATT 57.507 29.630 0.00 0.00 0.00 1.28
7433 8208 5.852282 AGGTGGACATAATTGCCATTAAC 57.148 39.130 0.00 0.00 33.54 2.01
7489 8264 4.083537 CCTTACAGAAAATACGCTGCAACA 60.084 41.667 0.00 0.00 35.57 3.33
7490 8265 4.403453 CCTTACAGAAAATACGCTGCAAC 58.597 43.478 0.00 0.00 35.57 4.17
7498 8273 7.599171 TGCTTTTAAGGCCTTACAGAAAATAC 58.401 34.615 25.13 17.31 0.00 1.89
7564 8339 7.092399 ACCTTATAAGCAGTAGAAATCCCAACT 60.092 37.037 6.99 0.00 0.00 3.16
7569 8344 7.272978 TGACACCTTATAAGCAGTAGAAATCC 58.727 38.462 6.99 0.00 0.00 3.01
7817 8592 9.106286 CAGCAATACATAAAAACTATATGCGTG 57.894 33.333 0.00 0.00 34.75 5.34
7819 8594 7.271223 GCCAGCAATACATAAAAACTATATGCG 59.729 37.037 0.00 0.00 34.75 4.73
8173 8957 1.493022 TGGCCAGCTCCGGTAATAATT 59.507 47.619 0.00 0.00 0.00 1.40
8283 9075 4.583489 AGAATCCCTGCATCATCAAATGAC 59.417 41.667 0.00 0.00 43.01 3.06
8291 9084 3.947612 ACAGAAGAATCCCTGCATCAT 57.052 42.857 0.00 0.00 33.90 2.45
8361 9154 2.890945 GTGTAGGATGTTGGCAAAGGTT 59.109 45.455 0.00 0.00 0.00 3.50
8407 9200 6.697019 TGCTTTCTAAATTACCGTACCGATAC 59.303 38.462 0.00 0.00 0.00 2.24
8424 9218 5.013495 AGGAATATATGCTGGCTGCTTTCTA 59.987 40.000 17.45 7.17 43.37 2.10
8432 9226 9.624373 CAGAAAATATAGGAATATATGCTGGCT 57.376 33.333 0.00 0.00 0.00 4.75
8495 9292 4.314440 GCTCAGCACCCACGGACA 62.314 66.667 0.00 0.00 0.00 4.02
8496 9293 4.314440 TGCTCAGCACCCACGGAC 62.314 66.667 0.00 0.00 31.71 4.79
8500 9297 2.670934 CACCTGCTCAGCACCCAC 60.671 66.667 0.00 0.00 33.79 4.61
8501 9298 2.848679 TCACCTGCTCAGCACCCA 60.849 61.111 0.00 0.00 33.79 4.51
8502 9299 2.046507 CTCACCTGCTCAGCACCC 60.047 66.667 0.00 0.00 33.79 4.61
8503 9300 2.745492 GCTCACCTGCTCAGCACC 60.745 66.667 0.00 0.00 33.79 5.01
8665 9472 2.963782 TGGTAGGTAGCTAGGCTTAAGC 59.036 50.000 19.53 19.53 40.44 3.09
8668 9475 5.082425 GGTATTGGTAGGTAGCTAGGCTTA 58.918 45.833 0.86 0.00 40.44 3.09
8670 9477 3.116862 TGGTATTGGTAGGTAGCTAGGCT 60.117 47.826 0.86 0.00 43.41 4.58
8671 9478 3.236896 TGGTATTGGTAGGTAGCTAGGC 58.763 50.000 0.86 0.00 0.00 3.93
8674 9481 4.291792 TGCTTGGTATTGGTAGGTAGCTA 58.708 43.478 0.00 0.00 0.00 3.32
8675 9482 3.112263 TGCTTGGTATTGGTAGGTAGCT 58.888 45.455 0.00 0.00 0.00 3.32
8676 9483 3.553828 TGCTTGGTATTGGTAGGTAGC 57.446 47.619 0.00 0.00 0.00 3.58
8680 9497 4.704540 TCACAAATGCTTGGTATTGGTAGG 59.295 41.667 0.00 0.00 36.82 3.18
8684 9501 5.587388 AGATCACAAATGCTTGGTATTGG 57.413 39.130 0.00 0.00 36.82 3.16
8704 9535 7.607991 GTGTCCCATTTCATCTTTAGAAGAAGA 59.392 37.037 0.00 0.00 41.63 2.87
8711 9542 6.600822 ACATCTGTGTCCCATTTCATCTTTAG 59.399 38.462 0.00 0.00 31.41 1.85
8718 9549 6.572119 GCATAAAACATCTGTGTCCCATTTCA 60.572 38.462 0.00 0.00 37.67 2.69
8726 9557 5.509272 CGAACATGCATAAAACATCTGTGTC 59.491 40.000 0.00 0.00 37.67 3.67
8727 9558 5.181056 TCGAACATGCATAAAACATCTGTGT 59.819 36.000 0.00 0.00 41.28 3.72
8731 9562 8.437360 TTCTATCGAACATGCATAAAACATCT 57.563 30.769 0.00 0.00 0.00 2.90
8733 9564 8.437360 TCTTCTATCGAACATGCATAAAACAT 57.563 30.769 0.00 0.00 0.00 2.71
8735 9566 9.554724 TTTTCTTCTATCGAACATGCATAAAAC 57.445 29.630 0.00 0.00 0.00 2.43
8744 9575 7.589954 CGTTTTTGGTTTTCTTCTATCGAACAT 59.410 33.333 0.00 0.00 0.00 2.71
8749 9580 7.901874 TTTCGTTTTTGGTTTTCTTCTATCG 57.098 32.000 0.00 0.00 0.00 2.92
8786 9617 9.515226 CCCAACCATTATTTAGCTAGCTAATTA 57.485 33.333 32.22 28.18 38.20 1.40
8787 9618 8.004801 ACCCAACCATTATTTAGCTAGCTAATT 58.995 33.333 32.22 29.08 38.20 1.40
8805 9641 2.746279 ACAAATCAGTCACCCAACCA 57.254 45.000 0.00 0.00 0.00 3.67
8806 9642 4.119136 CAAAACAAATCAGTCACCCAACC 58.881 43.478 0.00 0.00 0.00 3.77
8808 9644 4.221703 ACACAAAACAAATCAGTCACCCAA 59.778 37.500 0.00 0.00 0.00 4.12
8810 9646 4.111916 CACACAAAACAAATCAGTCACCC 58.888 43.478 0.00 0.00 0.00 4.61
8812 9648 4.562394 CCACACACAAAACAAATCAGTCAC 59.438 41.667 0.00 0.00 0.00 3.67
8813 9649 4.460731 TCCACACACAAAACAAATCAGTCA 59.539 37.500 0.00 0.00 0.00 3.41
8814 9650 4.992688 TCCACACACAAAACAAATCAGTC 58.007 39.130 0.00 0.00 0.00 3.51
8815 9651 5.047377 AGTTCCACACACAAAACAAATCAGT 60.047 36.000 0.00 0.00 0.00 3.41
8816 9652 5.289193 CAGTTCCACACACAAAACAAATCAG 59.711 40.000 0.00 0.00 0.00 2.90
8817 9653 5.167121 CAGTTCCACACACAAAACAAATCA 58.833 37.500 0.00 0.00 0.00 2.57
8818 9654 4.566360 CCAGTTCCACACACAAAACAAATC 59.434 41.667 0.00 0.00 0.00 2.17
8819 9655 4.502962 CCAGTTCCACACACAAAACAAAT 58.497 39.130 0.00 0.00 0.00 2.32
8822 9658 1.203523 GCCAGTTCCACACACAAAACA 59.796 47.619 0.00 0.00 0.00 2.83
8823 9659 1.797348 CGCCAGTTCCACACACAAAAC 60.797 52.381 0.00 0.00 0.00 2.43
8824 9660 0.453793 CGCCAGTTCCACACACAAAA 59.546 50.000 0.00 0.00 0.00 2.44
8835 9671 3.357079 CCTGCACCACGCCAGTTC 61.357 66.667 0.00 0.00 41.33 3.01
8881 9717 3.851845 CTTGCCCACGTCGTCCGAA 62.852 63.158 0.00 0.00 40.70 4.30
8895 9731 3.122850 CATCGCCCATTCCCTTGC 58.877 61.111 0.00 0.00 0.00 4.01
8924 9760 1.332997 GGTGTGATTATCAGCAGCAGC 59.667 52.381 16.14 8.67 42.56 5.25
8925 9761 1.596260 CGGTGTGATTATCAGCAGCAG 59.404 52.381 18.88 11.95 33.61 4.24
8926 9762 1.206849 TCGGTGTGATTATCAGCAGCA 59.793 47.619 18.88 4.25 33.61 4.41
9032 9868 1.202290 ACGAACAGCAAAAACAGCCAG 60.202 47.619 0.00 0.00 0.00 4.85
9034 9870 2.032924 AGTACGAACAGCAAAAACAGCC 59.967 45.455 0.00 0.00 0.00 4.85
9044 9892 3.372206 TCCTAAGTACGAGTACGAACAGC 59.628 47.826 7.64 0.00 42.66 4.40
9055 9903 2.766263 TCTCCTACCGTCCTAAGTACGA 59.234 50.000 0.00 0.00 42.90 3.43
9074 9922 1.765314 ACTCCAGCGCTTATTCCATCT 59.235 47.619 7.50 0.00 0.00 2.90
9107 9955 4.698780 TGATCCCGATACAGGATTACTACG 59.301 45.833 0.00 0.00 44.36 3.51
9167 10018 8.450578 TCATTCGGTAAATTGCTCATATTTCT 57.549 30.769 0.00 0.00 0.00 2.52
9227 10078 9.002600 CATGGCTTATTTTATCACTGCTATACA 57.997 33.333 0.00 0.00 0.00 2.29
9354 10206 8.492415 TCTAGTGTTTGCCCTAGATATGTTAT 57.508 34.615 0.00 0.00 35.82 1.89
9462 10321 0.179137 CGACGACATGGCTAGCAAGA 60.179 55.000 18.24 0.00 0.00 3.02
9468 10327 0.738975 CCTCTTCGACGACATGGCTA 59.261 55.000 0.00 0.00 0.00 3.93
9483 10342 2.623915 CCCGACGTCGACAACCTCT 61.624 63.158 37.65 0.00 43.02 3.69
9517 10385 2.035312 ACGGACGCCCTGTACTCT 59.965 61.111 0.00 0.00 0.00 3.24
9569 10443 4.520179 GGAGAAGGGCGATAAGGTTTTTA 58.480 43.478 0.00 0.00 0.00 1.52
9582 10456 0.967662 GTCCTATACGGGAGAAGGGC 59.032 60.000 0.00 0.00 35.87 5.19
9596 10470 0.895530 CCGCACCTCTTTGAGTCCTA 59.104 55.000 0.00 0.00 0.00 2.94
9682 10556 1.003118 CCACCGGTTCCAATCTCTGAA 59.997 52.381 2.97 0.00 0.00 3.02
9720 10598 2.101783 CTCTCAGAGAGATGCACCAGT 58.898 52.381 21.55 0.00 45.07 4.00
9744 10625 1.416772 GCGCCTATAAAAGGGAGGTCT 59.583 52.381 0.00 0.00 46.65 3.85
9828 10711 1.915228 CTGCCCCCTTTAGCTGCTA 59.085 57.895 5.02 5.02 0.00 3.49
9835 10718 1.543065 TACGAACGCTGCCCCCTTTA 61.543 55.000 0.00 0.00 0.00 1.85
9842 10727 3.120649 GGATATTGAATACGAACGCTGCC 60.121 47.826 0.00 0.00 0.00 4.85
9895 10784 7.417116 CCACACACTATAGGTATACGAAAGGTT 60.417 40.741 4.43 0.00 0.00 3.50
9910 10799 8.397575 TGTCTAAATTTTTGCCACACACTATA 57.602 30.769 0.00 0.00 0.00 1.31
9938 10828 3.508840 GGGTTGCGGGAATGAGCG 61.509 66.667 0.00 0.00 35.87 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.