Multiple sequence alignment - TraesCS5D01G161900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G161900 chr5D 100.000 8351 0 0 1 8351 252628978 252620628 0.000000e+00 15422
1 TraesCS5D01G161900 chr5D 96.324 136 5 0 2460 2595 252626383 252626248 3.030000e-54 224
2 TraesCS5D01G161900 chr5D 96.324 136 5 0 2596 2731 252626519 252626384 3.030000e-54 224
3 TraesCS5D01G161900 chr5A 94.753 5813 181 31 2596 8351 335302045 335296300 0.000000e+00 8931
4 TraesCS5D01G161900 chr5A 94.470 2622 100 17 1 2595 335304513 335301910 0.000000e+00 3997
5 TraesCS5D01G161900 chr5B 94.737 4275 133 26 3949 8187 285047082 285042864 0.000000e+00 6564
6 TraesCS5D01G161900 chr5B 94.008 2620 111 13 1 2595 285050852 285048254 0.000000e+00 3927
7 TraesCS5D01G161900 chr5B 94.903 1334 43 6 2596 3924 285048389 285047076 0.000000e+00 2063


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G161900 chr5D 252620628 252628978 8350 True 5290.000000 15422 97.549333 1 8351 3 chr5D.!!$R1 8350
1 TraesCS5D01G161900 chr5A 335296300 335304513 8213 True 6464.000000 8931 94.611500 1 8351 2 chr5A.!!$R1 8350
2 TraesCS5D01G161900 chr5B 285042864 285050852 7988 True 4184.666667 6564 94.549333 1 8187 3 chr5B.!!$R1 8186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 243 0.648441 TCGACGCAACCAATATTCGC 59.352 50.000 0.00 0.00 0.00 4.70 F
1168 1205 0.179108 AGACGGCTTTGCGGATAGAC 60.179 55.000 0.00 0.00 33.14 2.59 F
1773 1821 0.179137 TCTGGATTAGTCAGCACGCG 60.179 55.000 3.53 3.53 32.63 6.01 F
2215 2264 1.078567 GCTCCTTCCCAGCAGACAG 60.079 63.158 0.00 0.00 36.82 3.51 F
3933 4012 0.174845 TCCTGGTCTAATGTTCGGCG 59.825 55.000 0.00 0.00 0.00 6.46 F
4414 4493 0.109342 CCACAGGCCAGTCAAGACTT 59.891 55.000 5.01 0.00 40.20 3.01 F
4796 4875 0.467804 TTGCAAAGGAAACCCAAGCC 59.532 50.000 0.00 0.00 0.00 4.35 F
5106 5185 0.784495 TGGTGAGAGTAGACCTGGGT 59.216 55.000 0.00 0.00 32.98 4.51 F
5116 5195 0.977395 AGACCTGGGTACACAGAAGC 59.023 55.000 27.00 14.26 40.97 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2122 2171 0.323999 TCCCTGCGCTCAAGTACCTA 60.324 55.000 9.73 0.0 0.00 3.08 R
2669 2719 1.644509 TCTAGCAGCCCTCAGTCAAA 58.355 50.000 0.00 0.0 0.00 2.69 R
2670 2720 1.644509 TTCTAGCAGCCCTCAGTCAA 58.355 50.000 0.00 0.0 0.00 3.18 R
4197 4276 1.000955 ACCACCGCACTGTAAGAGAAG 59.999 52.381 0.00 0.0 37.43 2.85 R
5116 5195 1.512926 CCCAACAGACAACTTCTCGG 58.487 55.000 0.00 0.0 28.96 4.63 R
6392 6494 3.212685 CTGAGATGAAAATCCAGGAGGC 58.787 50.000 0.00 0.0 33.74 4.70 R
6570 6672 1.339055 CGACCCAGCCTGAGATGAAAA 60.339 52.381 0.00 0.0 0.00 2.29 R
6710 6812 3.051581 ACCTGAGAATGTGGAGCCATAT 58.948 45.455 0.00 0.0 0.00 1.78 R
7583 7688 0.380378 CAAAAGGGGACACACACACG 59.620 55.000 0.00 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.519906 AAGAGGGAAAGAAAAGTCCACA 57.480 40.909 0.00 0.00 35.44 4.17
106 107 4.694760 ATCTCGAATGTCCATCAATCCA 57.305 40.909 0.00 0.00 0.00 3.41
120 121 2.237143 TCAATCCAATTCTCTCTGGCGT 59.763 45.455 0.00 0.00 32.33 5.68
165 166 3.013921 ACACACAAACACAAGGTTCGAT 58.986 40.909 0.00 0.00 39.29 3.59
191 192 5.006386 AGAAACTGATGAAGCGAAAGGAAT 58.994 37.500 0.00 0.00 0.00 3.01
241 243 0.648441 TCGACGCAACCAATATTCGC 59.352 50.000 0.00 0.00 0.00 4.70
244 246 1.010125 CGCAACCAATATTCGCCGG 60.010 57.895 0.00 0.00 0.00 6.13
247 249 1.101049 CAACCAATATTCGCCGGCCT 61.101 55.000 23.46 8.60 0.00 5.19
260 262 3.138798 GGCCTCGACCTCGTAGCA 61.139 66.667 0.00 0.00 39.12 3.49
290 292 7.659799 TCATCAATTAGTCAACCGAGAGAAAAA 59.340 33.333 0.00 0.00 0.00 1.94
336 338 5.588648 TGGAGGGCGACAAATATAAGAAAAG 59.411 40.000 0.00 0.00 0.00 2.27
345 347 7.361713 CGACAAATATAAGAAAAGGCACTGGAA 60.362 37.037 0.00 0.00 40.86 3.53
355 357 1.172812 GGCACTGGAAGCCGAAAACT 61.173 55.000 0.00 0.00 43.15 2.66
357 359 2.084546 GCACTGGAAGCCGAAAACTAT 58.915 47.619 0.00 0.00 37.60 2.12
364 366 5.007034 TGGAAGCCGAAAACTATCATTTGA 58.993 37.500 0.00 0.00 0.00 2.69
371 373 4.719164 CGAAAACTATCATTTGACGCGAAG 59.281 41.667 15.93 0.00 0.00 3.79
394 397 5.470777 AGATCGGTCGGAAACAACAAATTAA 59.529 36.000 0.00 0.00 0.00 1.40
399 402 6.217294 GGTCGGAAACAACAAATTAAATGGA 58.783 36.000 0.00 0.00 0.00 3.41
430 433 5.220228 CCAATGCGTTGTTTTCGTTTGTTTA 60.220 36.000 17.19 0.00 33.36 2.01
475 480 7.132213 CACCTAATTCTTTACATAACGCATGG 58.868 38.462 0.00 0.00 39.13 3.66
486 491 2.190170 ACGCATGGGACGTTTGCAA 61.190 52.632 17.76 0.00 41.93 4.08
499 511 3.545873 ACGTTTGCAACAAAATGACTTCG 59.454 39.130 0.00 0.00 31.72 3.79
506 518 4.143473 GCAACAAAATGACTTCGATTGCAG 60.143 41.667 7.87 0.00 40.63 4.41
533 545 3.493334 ACATACCATGGCATCCAATCTG 58.507 45.455 13.04 0.00 36.95 2.90
547 559 5.883685 TCCAATCTGCATGATCTAGTTCT 57.116 39.130 0.00 0.00 33.57 3.01
574 586 6.435430 TCTATGTTTCGGTTTGAATCATGG 57.565 37.500 10.07 8.00 43.50 3.66
575 587 3.932545 TGTTTCGGTTTGAATCATGGG 57.067 42.857 0.00 0.00 36.22 4.00
576 588 3.491342 TGTTTCGGTTTGAATCATGGGA 58.509 40.909 0.00 0.00 36.22 4.37
577 589 3.891977 TGTTTCGGTTTGAATCATGGGAA 59.108 39.130 0.00 0.00 36.22 3.97
578 590 4.526262 TGTTTCGGTTTGAATCATGGGAAT 59.474 37.500 0.00 0.00 36.22 3.01
579 591 4.717233 TTCGGTTTGAATCATGGGAATG 57.283 40.909 0.00 0.00 0.00 2.67
580 592 3.023119 TCGGTTTGAATCATGGGAATGG 58.977 45.455 0.00 0.00 0.00 3.16
598 610 5.339530 GGAATGGGAGAGAATCAAAGGAAGA 60.340 44.000 0.00 0.00 37.82 2.87
770 790 2.690653 CTTCCCCAACACAAGCCCGA 62.691 60.000 0.00 0.00 0.00 5.14
1050 1082 2.880167 GCGATTCCCCCATAATCTTCCC 60.880 54.545 0.00 0.00 32.29 3.97
1113 1150 5.231991 CCCTGCGTTTATTAATTTGATGTGC 59.768 40.000 0.00 0.00 0.00 4.57
1168 1205 0.179108 AGACGGCTTTGCGGATAGAC 60.179 55.000 0.00 0.00 33.14 2.59
1220 1257 2.812178 CCTTACCCACGCGTTCGG 60.812 66.667 10.22 15.44 40.69 4.30
1269 1306 4.636249 CTTCCTGTAGCTATGGGATTGTC 58.364 47.826 15.34 0.00 0.00 3.18
1476 1513 4.035102 GTGACTCCCACCCTGCCC 62.035 72.222 0.00 0.00 39.86 5.36
1509 1546 2.100605 ACCAGGACGCTCTTTCATTC 57.899 50.000 0.00 0.00 0.00 2.67
1522 1559 6.690957 CGCTCTTTCATTCTTTTGTTTGTGTA 59.309 34.615 0.00 0.00 0.00 2.90
1524 1561 9.677567 GCTCTTTCATTCTTTTGTTTGTGTATA 57.322 29.630 0.00 0.00 0.00 1.47
1534 1581 8.941977 TCTTTTGTTTGTGTATATATGCGACTT 58.058 29.630 0.00 0.00 0.00 3.01
1678 1725 0.611714 GTGTGACAGGTAATCCCCGT 59.388 55.000 0.00 0.00 0.00 5.28
1681 1729 1.553704 GTGACAGGTAATCCCCGTCTT 59.446 52.381 0.00 0.00 37.47 3.01
1773 1821 0.179137 TCTGGATTAGTCAGCACGCG 60.179 55.000 3.53 3.53 32.63 6.01
1969 2017 5.193679 AGAAACCTGGTCTACATAATTGGC 58.806 41.667 0.00 0.00 0.00 4.52
2002 2050 7.532571 CAAATTTATGCAATGAGAGTGTGAGA 58.467 34.615 0.00 0.00 0.00 3.27
2019 2067 6.892691 GTGTGAGAACACTATTCTTTCCTTG 58.107 40.000 1.80 0.00 46.07 3.61
2099 2147 2.698855 ATTGTAGCTCTGACGCCAAT 57.301 45.000 0.00 0.00 0.00 3.16
2100 2148 1.725641 TTGTAGCTCTGACGCCAATG 58.274 50.000 0.00 0.00 0.00 2.82
2115 2164 7.051623 TGACGCCAATGTTACTATTATCCTTT 58.948 34.615 0.00 0.00 0.00 3.11
2116 2165 7.011950 TGACGCCAATGTTACTATTATCCTTTG 59.988 37.037 0.00 0.00 0.00 2.77
2120 2169 9.869757 GCCAATGTTACTATTATCCTTTGTTTT 57.130 29.630 0.00 0.00 0.00 2.43
2163 2212 6.661805 GGGAATACTTTGGTCAGTATGGAAAA 59.338 38.462 0.00 0.00 38.77 2.29
2215 2264 1.078567 GCTCCTTCCCAGCAGACAG 60.079 63.158 0.00 0.00 36.82 3.51
2252 2301 4.245845 TCAGCGTGTATGTCTACAAACA 57.754 40.909 0.00 0.00 39.51 2.83
2258 2307 5.666203 CGTGTATGTCTACAAACAACACTG 58.334 41.667 14.15 8.11 39.51 3.66
2281 2330 8.501580 ACTGATGATCTTTTCAATATGCATACG 58.498 33.333 8.99 3.51 38.03 3.06
2379 2429 2.576615 CCTTTAATACCTGCCTGAGCC 58.423 52.381 0.00 0.00 38.69 4.70
2416 2466 3.390135 TGCGACTCAGAAAGTAAAGTGG 58.610 45.455 0.00 0.00 38.74 4.00
2586 2636 9.347240 AGCATGTGTAAAGAATATTTGATAGCT 57.653 29.630 0.00 0.00 0.00 3.32
2587 2637 9.956720 GCATGTGTAAAGAATATTTGATAGCTT 57.043 29.630 0.00 0.00 0.00 3.74
2616 2666 7.853377 GGCTAAAATAATTGCCGATTCTAAC 57.147 36.000 0.00 0.00 35.79 2.34
2617 2667 7.422399 GGCTAAAATAATTGCCGATTCTAACA 58.578 34.615 0.00 0.00 35.79 2.41
2618 2668 8.082242 GGCTAAAATAATTGCCGATTCTAACAT 58.918 33.333 0.00 0.00 35.79 2.71
2619 2669 8.905702 GCTAAAATAATTGCCGATTCTAACATG 58.094 33.333 0.00 0.00 0.00 3.21
2621 2671 8.856490 AAAATAATTGCCGATTCTAACATGAC 57.144 30.769 0.00 0.00 0.00 3.06
2622 2672 7.566760 AATAATTGCCGATTCTAACATGACA 57.433 32.000 0.00 0.00 0.00 3.58
2623 2673 7.750229 ATAATTGCCGATTCTAACATGACAT 57.250 32.000 0.00 0.00 0.00 3.06
2624 2674 4.880886 TTGCCGATTCTAACATGACATG 57.119 40.909 14.02 14.02 0.00 3.21
2626 2676 3.871006 TGCCGATTCTAACATGACATGTC 59.129 43.478 21.05 19.27 44.07 3.06
2627 2677 3.248602 GCCGATTCTAACATGACATGTCC 59.751 47.826 22.85 5.91 44.07 4.02
2628 2678 4.697514 CCGATTCTAACATGACATGTCCT 58.302 43.478 22.85 10.76 44.07 3.85
2629 2679 5.118990 CCGATTCTAACATGACATGTCCTT 58.881 41.667 22.85 13.29 44.07 3.36
2630 2680 5.007039 CCGATTCTAACATGACATGTCCTTG 59.993 44.000 22.85 20.67 44.07 3.61
2631 2681 5.812127 CGATTCTAACATGACATGTCCTTGA 59.188 40.000 24.69 10.32 44.07 3.02
2632 2682 6.481313 CGATTCTAACATGACATGTCCTTGAT 59.519 38.462 24.69 18.13 44.07 2.57
2633 2683 7.653311 CGATTCTAACATGACATGTCCTTGATA 59.347 37.037 24.69 18.24 44.07 2.15
2634 2684 8.668510 ATTCTAACATGACATGTCCTTGATAC 57.331 34.615 24.69 2.07 44.07 2.24
2635 2685 7.181569 TCTAACATGACATGTCCTTGATACA 57.818 36.000 24.69 7.34 44.07 2.29
2636 2686 7.619965 TCTAACATGACATGTCCTTGATACAA 58.380 34.615 24.69 6.13 44.07 2.41
2637 2687 6.500684 AACATGACATGTCCTTGATACAAC 57.499 37.500 24.69 0.30 44.07 3.32
2638 2688 4.943705 ACATGACATGTCCTTGATACAACC 59.056 41.667 24.69 0.12 39.92 3.77
2639 2689 3.950397 TGACATGTCCTTGATACAACCC 58.050 45.455 22.85 0.00 0.00 4.11
2640 2690 3.587061 TGACATGTCCTTGATACAACCCT 59.413 43.478 22.85 0.00 0.00 4.34
2641 2691 3.941483 GACATGTCCTTGATACAACCCTG 59.059 47.826 15.31 0.00 0.00 4.45
2642 2692 3.330701 ACATGTCCTTGATACAACCCTGT 59.669 43.478 0.00 0.00 39.75 4.00
2643 2693 3.695830 TGTCCTTGATACAACCCTGTC 57.304 47.619 0.00 0.00 36.96 3.51
2644 2694 2.976185 TGTCCTTGATACAACCCTGTCA 59.024 45.455 0.00 0.00 36.96 3.58
2645 2695 3.392947 TGTCCTTGATACAACCCTGTCAA 59.607 43.478 0.00 0.00 36.96 3.18
2646 2696 4.042809 TGTCCTTGATACAACCCTGTCAAT 59.957 41.667 0.00 0.00 36.96 2.57
2647 2697 5.010282 GTCCTTGATACAACCCTGTCAATT 58.990 41.667 0.00 0.00 36.96 2.32
2648 2698 5.476945 GTCCTTGATACAACCCTGTCAATTT 59.523 40.000 0.00 0.00 36.96 1.82
2649 2699 5.710099 TCCTTGATACAACCCTGTCAATTTC 59.290 40.000 0.00 0.00 36.96 2.17
2650 2700 5.476599 CCTTGATACAACCCTGTCAATTTCA 59.523 40.000 0.00 0.00 36.96 2.69
2651 2701 6.349611 CCTTGATACAACCCTGTCAATTTCAG 60.350 42.308 1.62 1.62 36.96 3.02
2662 2712 7.814264 CCTGTCAATTTCAGGCTAATCTAAT 57.186 36.000 11.88 0.00 44.46 1.73
2663 2713 7.869800 CCTGTCAATTTCAGGCTAATCTAATC 58.130 38.462 11.88 0.00 44.46 1.75
2664 2714 7.718753 CCTGTCAATTTCAGGCTAATCTAATCT 59.281 37.037 11.88 0.00 44.46 2.40
2665 2715 8.442632 TGTCAATTTCAGGCTAATCTAATCTG 57.557 34.615 0.00 0.00 0.00 2.90
2666 2716 8.267183 TGTCAATTTCAGGCTAATCTAATCTGA 58.733 33.333 0.00 0.00 33.30 3.27
2667 2717 9.113838 GTCAATTTCAGGCTAATCTAATCTGAA 57.886 33.333 0.00 0.00 41.07 3.02
2668 2718 9.857656 TCAATTTCAGGCTAATCTAATCTGAAT 57.142 29.630 0.00 0.00 41.94 2.57
2673 2723 9.685276 TTCAGGCTAATCTAATCTGAATTTTGA 57.315 29.630 0.00 0.00 38.88 2.69
2674 2724 9.113838 TCAGGCTAATCTAATCTGAATTTTGAC 57.886 33.333 0.00 0.00 32.36 3.18
2675 2725 9.118300 CAGGCTAATCTAATCTGAATTTTGACT 57.882 33.333 0.00 0.00 0.00 3.41
2676 2726 9.118300 AGGCTAATCTAATCTGAATTTTGACTG 57.882 33.333 0.00 0.00 0.00 3.51
2677 2727 9.113838 GGCTAATCTAATCTGAATTTTGACTGA 57.886 33.333 0.00 0.00 0.00 3.41
2680 2730 8.517062 AATCTAATCTGAATTTTGACTGAGGG 57.483 34.615 0.00 0.00 0.00 4.30
2681 2731 5.882557 TCTAATCTGAATTTTGACTGAGGGC 59.117 40.000 0.00 0.00 0.00 5.19
2682 2732 3.795688 TCTGAATTTTGACTGAGGGCT 57.204 42.857 0.00 0.00 0.00 5.19
2683 2733 3.415212 TCTGAATTTTGACTGAGGGCTG 58.585 45.455 0.00 0.00 0.00 4.85
2684 2734 1.888512 TGAATTTTGACTGAGGGCTGC 59.111 47.619 0.00 0.00 0.00 5.25
2685 2735 2.165998 GAATTTTGACTGAGGGCTGCT 58.834 47.619 0.00 0.00 0.00 4.24
2686 2736 3.244875 TGAATTTTGACTGAGGGCTGCTA 60.245 43.478 0.00 0.00 0.00 3.49
2687 2737 2.479566 TTTTGACTGAGGGCTGCTAG 57.520 50.000 0.00 0.00 0.00 3.42
2688 2738 1.644509 TTTGACTGAGGGCTGCTAGA 58.355 50.000 0.00 0.00 0.00 2.43
2689 2739 1.644509 TTGACTGAGGGCTGCTAGAA 58.355 50.000 0.00 0.00 0.00 2.10
2690 2740 1.871418 TGACTGAGGGCTGCTAGAAT 58.129 50.000 0.00 0.00 0.00 2.40
2691 2741 3.032265 TGACTGAGGGCTGCTAGAATA 57.968 47.619 0.00 0.00 0.00 1.75
2692 2742 3.581101 TGACTGAGGGCTGCTAGAATAT 58.419 45.455 0.00 0.00 0.00 1.28
2693 2743 3.969976 TGACTGAGGGCTGCTAGAATATT 59.030 43.478 0.00 0.00 0.00 1.28
2694 2744 5.147767 TGACTGAGGGCTGCTAGAATATTA 58.852 41.667 0.00 0.00 0.00 0.98
2695 2745 5.782331 TGACTGAGGGCTGCTAGAATATTAT 59.218 40.000 0.00 0.00 0.00 1.28
2696 2746 6.954102 TGACTGAGGGCTGCTAGAATATTATA 59.046 38.462 0.00 0.00 0.00 0.98
2697 2747 7.123397 TGACTGAGGGCTGCTAGAATATTATAG 59.877 40.741 11.95 11.95 0.00 1.31
2698 2748 6.127196 ACTGAGGGCTGCTAGAATATTATAGC 60.127 42.308 27.58 27.58 45.56 2.97
2759 2809 5.476945 TGAAAGATGTAGCTGTCTAGTGTCA 59.523 40.000 0.00 0.00 0.00 3.58
2770 2820 6.070538 AGCTGTCTAGTGTCATAAAATCCAGT 60.071 38.462 0.00 0.00 0.00 4.00
2895 2945 8.012241 CAGTTCAGTTATTGCTTCTGAAACTAC 58.988 37.037 8.12 0.00 45.49 2.73
3194 3246 3.134458 GAGTGAAAACTCTGGTGGACTG 58.866 50.000 0.00 0.00 34.12 3.51
3211 3265 3.786635 GACTGTGTCCATCATGTCTACC 58.213 50.000 0.00 0.00 33.24 3.18
3287 3341 6.439636 TCCTATTCTCTCCATAATTGTGGG 57.560 41.667 19.92 11.40 39.80 4.61
3318 3372 2.241160 TGTGTTCAAATGCTGGCTCAT 58.759 42.857 0.00 0.00 0.00 2.90
3328 3382 7.930217 TCAAATGCTGGCTCATTAGTTATTAC 58.070 34.615 6.10 0.00 35.77 1.89
3329 3383 7.775093 TCAAATGCTGGCTCATTAGTTATTACT 59.225 33.333 6.10 0.00 35.77 2.24
3330 3384 8.408601 CAAATGCTGGCTCATTAGTTATTACTT 58.591 33.333 6.10 0.00 35.77 2.24
3331 3385 9.627123 AAATGCTGGCTCATTAGTTATTACTTA 57.373 29.630 6.10 0.00 35.77 2.24
3332 3386 9.799106 AATGCTGGCTCATTAGTTATTACTTAT 57.201 29.630 4.23 0.00 35.12 1.73
3333 3387 9.799106 ATGCTGGCTCATTAGTTATTACTTATT 57.201 29.630 0.00 0.00 35.78 1.40
3457 3511 3.457012 GGTTAGCCTTATACCTTGTCCCA 59.543 47.826 0.00 0.00 0.00 4.37
3630 3684 2.283884 GCTATCTTTCTCAGTGCTTCGC 59.716 50.000 0.00 0.00 0.00 4.70
3680 3735 5.819379 TCCAGATTGTCTCTATTTGCATGAC 59.181 40.000 0.00 0.00 31.13 3.06
3800 3856 2.867624 TCTTGTTCTGCTTGCTCCATT 58.132 42.857 0.00 0.00 0.00 3.16
3830 3897 1.068127 CTAAGCATGCAAATCCTGGCC 59.932 52.381 21.98 0.00 0.00 5.36
3831 3898 0.616679 AAGCATGCAAATCCTGGCCT 60.617 50.000 21.98 0.00 0.00 5.19
3832 3899 0.259647 AGCATGCAAATCCTGGCCTA 59.740 50.000 21.98 0.00 0.00 3.93
3833 3900 1.133262 AGCATGCAAATCCTGGCCTAT 60.133 47.619 21.98 0.00 0.00 2.57
3834 3901 2.108776 AGCATGCAAATCCTGGCCTATA 59.891 45.455 21.98 0.00 0.00 1.31
3835 3902 3.094572 GCATGCAAATCCTGGCCTATAT 58.905 45.455 14.21 0.00 0.00 0.86
3836 3903 4.018141 AGCATGCAAATCCTGGCCTATATA 60.018 41.667 21.98 0.00 0.00 0.86
3837 3904 4.706476 GCATGCAAATCCTGGCCTATATAA 59.294 41.667 14.21 0.00 0.00 0.98
3838 3905 5.361857 GCATGCAAATCCTGGCCTATATAAT 59.638 40.000 14.21 0.00 0.00 1.28
3839 3906 6.682113 GCATGCAAATCCTGGCCTATATAATG 60.682 42.308 14.21 0.00 0.00 1.90
3840 3907 4.706476 TGCAAATCCTGGCCTATATAATGC 59.294 41.667 3.32 7.59 0.00 3.56
3841 3908 4.952335 GCAAATCCTGGCCTATATAATGCT 59.048 41.667 3.32 0.00 0.00 3.79
3842 3909 5.420104 GCAAATCCTGGCCTATATAATGCTT 59.580 40.000 3.32 0.00 0.00 3.91
3843 3910 6.603201 GCAAATCCTGGCCTATATAATGCTTA 59.397 38.462 3.32 0.00 0.00 3.09
3929 4008 4.479786 AGAAGCTCCTGGTCTAATGTTC 57.520 45.455 0.00 0.00 0.00 3.18
3933 4012 0.174845 TCCTGGTCTAATGTTCGGCG 59.825 55.000 0.00 0.00 0.00 6.46
3975 4054 3.816994 AGTAGGAAGTTTTGCCTTTCGT 58.183 40.909 0.00 0.00 35.73 3.85
4319 4398 4.338682 TCGTTCTGCTTTCCTACCTAGATC 59.661 45.833 0.00 0.00 0.00 2.75
4414 4493 0.109342 CCACAGGCCAGTCAAGACTT 59.891 55.000 5.01 0.00 40.20 3.01
4560 4639 2.030363 GGGCATCGTGATTTGAACACAA 60.030 45.455 0.00 0.00 38.04 3.33
4796 4875 0.467804 TTGCAAAGGAAACCCAAGCC 59.532 50.000 0.00 0.00 0.00 4.35
5106 5185 0.784495 TGGTGAGAGTAGACCTGGGT 59.216 55.000 0.00 0.00 32.98 4.51
5116 5195 0.977395 AGACCTGGGTACACAGAAGC 59.023 55.000 27.00 14.26 40.97 3.86
5188 5267 8.147058 AGATACAGTTCATAGTATGGCAGAAAG 58.853 37.037 10.26 0.00 31.45 2.62
5464 5543 7.149569 ACACATCACATATTTCTTTGTGGAG 57.850 36.000 0.00 0.17 42.72 3.86
5771 5850 3.524789 AGTTTGATCCATGGGATGAGTCA 59.475 43.478 13.02 0.00 43.27 3.41
6094 6174 2.797156 CTGGTGAGTATGATACTTGCGC 59.203 50.000 6.56 0.00 39.59 6.09
6239 6330 4.799564 TTTCATTGAGCATGGGTAAACC 57.200 40.909 0.00 0.00 40.81 3.27
6252 6343 2.890945 GGGTAAACCTTGCAACTCATGT 59.109 45.455 0.00 0.00 35.85 3.21
6330 6432 3.058293 TCGTTGCTGATGTGTTTCATTCC 60.058 43.478 0.00 0.00 36.83 3.01
6392 6494 2.496817 GCACCAGCTAGAGTCCCG 59.503 66.667 0.00 0.00 37.91 5.14
6492 6594 4.533707 TGAATCACCCTCATGGATATCCTC 59.466 45.833 22.35 7.66 38.00 3.71
6493 6595 3.636018 TCACCCTCATGGATATCCTCA 57.364 47.619 22.35 3.65 38.00 3.86
6494 6596 4.151943 TCACCCTCATGGATATCCTCAT 57.848 45.455 22.35 6.04 38.00 2.90
6541 6643 3.600448 TCCCCCTCATGGATTTTCATC 57.400 47.619 0.00 0.00 35.39 2.92
6542 6644 3.133665 TCCCCCTCATGGATTTTCATCT 58.866 45.455 0.00 0.00 35.39 2.90
6543 6645 3.139025 TCCCCCTCATGGATTTTCATCTC 59.861 47.826 0.00 0.00 35.39 2.75
6544 6646 3.117398 CCCCCTCATGGATTTTCATCTCA 60.117 47.826 0.00 0.00 35.39 3.27
6545 6647 4.142790 CCCCTCATGGATTTTCATCTCAG 58.857 47.826 0.00 0.00 35.39 3.35
6546 6648 4.142790 CCCTCATGGATTTTCATCTCAGG 58.857 47.826 0.00 0.00 35.39 3.86
6547 6649 3.568853 CCTCATGGATTTTCATCTCAGGC 59.431 47.826 0.00 0.00 34.57 4.85
6548 6650 4.462133 CTCATGGATTTTCATCTCAGGCT 58.538 43.478 0.00 0.00 0.00 4.58
6549 6651 4.204799 TCATGGATTTTCATCTCAGGCTG 58.795 43.478 8.58 8.58 0.00 4.85
6550 6652 3.008835 TGGATTTTCATCTCAGGCTGG 57.991 47.619 15.73 5.63 0.00 4.85
6551 6653 2.577563 TGGATTTTCATCTCAGGCTGGA 59.422 45.455 15.73 11.26 0.00 3.86
6552 6654 3.203710 TGGATTTTCATCTCAGGCTGGAT 59.796 43.478 15.73 13.09 0.00 3.41
6553 6655 3.819902 GGATTTTCATCTCAGGCTGGATC 59.180 47.826 15.73 4.42 0.00 3.36
6554 6656 4.446023 GGATTTTCATCTCAGGCTGGATCT 60.446 45.833 15.73 0.00 0.00 2.75
6555 6657 5.221803 GGATTTTCATCTCAGGCTGGATCTA 60.222 44.000 15.73 4.43 0.00 1.98
6556 6658 5.698741 TTTTCATCTCAGGCTGGATCTAA 57.301 39.130 15.73 9.62 0.00 2.10
6557 6659 5.901413 TTTCATCTCAGGCTGGATCTAAT 57.099 39.130 15.73 0.00 0.00 1.73
6558 6660 5.480642 TTCATCTCAGGCTGGATCTAATC 57.519 43.478 15.73 0.00 0.00 1.75
6568 6670 0.977395 GGATCTAATCCCCCTCACGG 59.023 60.000 0.00 0.00 43.88 4.94
6569 6671 1.482553 GGATCTAATCCCCCTCACGGA 60.483 57.143 0.00 0.00 43.88 4.69
6570 6672 2.541466 GATCTAATCCCCCTCACGGAT 58.459 52.381 0.00 0.00 42.12 4.18
6710 6812 1.281867 CAGAATGGGTCTAACCAGGCA 59.718 52.381 0.00 0.00 45.20 4.75
6750 6852 4.948004 CAGGTTTGTTTACTTCCCCTATCC 59.052 45.833 0.00 0.00 0.00 2.59
6751 6853 4.017775 AGGTTTGTTTACTTCCCCTATCCC 60.018 45.833 0.00 0.00 0.00 3.85
6756 6858 6.973700 TGTTTACTTCCCCTATCCCTTTTA 57.026 37.500 0.00 0.00 0.00 1.52
6773 6875 6.266786 TCCCTTTTACTTCTCCAAAACCAATC 59.733 38.462 0.00 0.00 0.00 2.67
6783 6885 9.362539 CTTCTCCAAAACCAATCATAATTTCAG 57.637 33.333 0.00 0.00 0.00 3.02
6918 7020 7.651027 ATTTATTGATCCTGCTATATTGGCC 57.349 36.000 0.00 0.00 0.00 5.36
7029 7131 9.606631 AATAATGATCCAAGACTTCAACTACTC 57.393 33.333 0.00 0.00 0.00 2.59
7241 7343 1.338105 TGGCTGGAGTGATTTGAGACG 60.338 52.381 0.00 0.00 0.00 4.18
7475 7580 3.181469 TGAGCTGGTACGTGAAAGTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
7479 7584 4.617959 CTGGTACGTGAAAGTTCTTCTGA 58.382 43.478 0.00 0.00 0.00 3.27
7569 7674 7.722949 ATGTGTTTCCATCATTTTATCCACT 57.277 32.000 0.00 0.00 0.00 4.00
7593 7698 9.811995 ACTAATTTGATATATACGTGTGTGTGT 57.188 29.630 0.00 0.00 0.00 3.72
7596 7701 5.190992 TGATATATACGTGTGTGTGTCCC 57.809 43.478 0.00 0.00 0.00 4.46
7597 7702 2.973694 ATATACGTGTGTGTGTCCCC 57.026 50.000 0.00 0.00 0.00 4.81
7612 7717 1.681264 GTCCCCTTTTGTCCTTGTGTG 59.319 52.381 0.00 0.00 0.00 3.82
7621 7726 8.190784 CCCTTTTGTCCTTGTGTGATTATAATC 58.809 37.037 17.09 17.09 35.97 1.75
7633 7738 9.225436 TGTGTGATTATAATCTTGCTTTGTGTA 57.775 29.630 22.77 0.00 36.39 2.90
7642 7747 3.376859 TCTTGCTTTGTGTAGTGTTGTGG 59.623 43.478 0.00 0.00 0.00 4.17
7645 7750 2.680841 GCTTTGTGTAGTGTTGTGGACA 59.319 45.455 0.00 0.00 35.42 4.02
7673 7778 3.622459 GTGCCGGCACATTAATGAC 57.378 52.632 46.18 22.21 45.53 3.06
7679 7784 0.248621 GGCACATTAATGACCGCTGC 60.249 55.000 22.16 18.56 0.00 5.25
7687 7793 0.250901 AATGACCGCTGCTTGTTCCT 60.251 50.000 0.00 0.00 0.00 3.36
7704 7814 1.704628 TCCTTTGCTTGGTCATCAGGA 59.295 47.619 0.00 0.00 0.00 3.86
7730 7840 5.451937 CCTTTCTAGGCGAAGTCATACATGA 60.452 44.000 0.00 0.00 33.99 3.07
7754 7864 6.388619 AACAGGTGGTCCTTGAAGTATATT 57.611 37.500 0.00 0.00 43.07 1.28
7805 7915 1.620819 GGCTTGAGAAGAGAGACACCA 59.379 52.381 0.00 0.00 0.00 4.17
7814 7924 3.512033 AGAGAGACACCATTTAGCGTC 57.488 47.619 0.00 0.00 0.00 5.19
7831 7943 2.351726 GCGTCTGTTCTATTTCGCCATT 59.648 45.455 0.00 0.00 38.16 3.16
7864 7976 2.166907 TGTTTTCTTGCCTTGGGGAA 57.833 45.000 0.00 0.00 33.58 3.97
7957 8072 1.187087 TGGTGTGGGGTTTGTTGAAC 58.813 50.000 0.00 0.00 37.53 3.18
7994 8109 8.743085 AAGCAAATGTGACAATCATCTATAGT 57.257 30.769 0.00 0.00 0.00 2.12
8015 8130 4.160252 AGTTCAACTGACAATTGTTTGGCT 59.840 37.500 13.36 11.62 41.80 4.75
8019 8134 4.311816 ACTGACAATTGTTTGGCTTCAG 57.688 40.909 13.36 14.83 41.80 3.02
8027 8142 7.581571 ACAATTGTTTGGCTTCAGACTGAAGA 61.582 38.462 37.89 21.77 44.92 2.87
8047 8163 8.925161 TGAAGAAAGTTTTTGACTACATTTGG 57.075 30.769 0.00 0.00 37.72 3.28
8063 8179 8.152246 ACTACATTTGGTGTTTGTTACTAGCTA 58.848 33.333 0.00 0.00 42.29 3.32
8065 8181 8.404107 ACATTTGGTGTTTGTTACTAGCTATT 57.596 30.769 0.00 0.00 38.01 1.73
8067 8183 9.769093 CATTTGGTGTTTGTTACTAGCTATTAC 57.231 33.333 0.00 0.00 0.00 1.89
8071 8187 6.454715 GGTGTTTGTTACTAGCTATTACGTGC 60.455 42.308 0.00 0.00 0.00 5.34
8073 8189 6.529125 TGTTTGTTACTAGCTATTACGTGCTC 59.471 38.462 0.00 0.00 40.35 4.26
8091 8207 3.243301 TGCTCTTCTCAAGCAAGCTTTTG 60.243 43.478 4.24 0.00 46.29 2.44
8092 8208 3.243334 GCTCTTCTCAAGCAAGCTTTTGT 60.243 43.478 4.24 0.00 39.61 2.83
8128 8245 7.859613 AGTAATGATAACGATTGATCAGACG 57.140 36.000 17.59 17.59 35.60 4.18
8132 8249 2.743636 AACGATTGATCAGACGTGGT 57.256 45.000 22.77 10.85 38.92 4.16
8134 8251 2.607187 ACGATTGATCAGACGTGGTTC 58.393 47.619 21.89 0.00 37.58 3.62
8161 8278 5.869753 AGTTTTGAGATGAACATTCCTCG 57.130 39.130 0.00 0.00 0.00 4.63
8167 8284 0.035439 ATGAACATTCCTCGGCCGTT 60.035 50.000 27.15 10.21 0.00 4.44
8182 8299 3.628017 GGCCGTTATGAAATTGAATCCG 58.372 45.455 0.00 0.00 0.00 4.18
8187 8304 2.877043 ATGAAATTGAATCCGGCAGC 57.123 45.000 0.00 0.00 0.00 5.25
8189 8306 1.473677 TGAAATTGAATCCGGCAGCTG 59.526 47.619 10.11 10.11 0.00 4.24
8215 8332 6.266168 TCTTATTTGGCGTGTGATTTTGAT 57.734 33.333 0.00 0.00 0.00 2.57
8225 8342 3.498018 GTGTGATTTTGATTGCAAACCCC 59.502 43.478 1.71 0.00 43.27 4.95
8229 8346 4.533707 TGATTTTGATTGCAAACCCCCATA 59.466 37.500 1.71 0.00 43.27 2.74
8235 8352 0.774276 TGCAAACCCCCATACTGTCA 59.226 50.000 0.00 0.00 0.00 3.58
8236 8353 1.173913 GCAAACCCCCATACTGTCAC 58.826 55.000 0.00 0.00 0.00 3.67
8262 8379 2.175499 TCTATTTGCCCCATCTCCTTGG 59.825 50.000 0.00 0.00 36.46 3.61
8268 8385 4.113815 CCATCTCCTTGGCGCCCA 62.114 66.667 26.77 13.22 0.00 5.36
8269 8386 2.825836 CATCTCCTTGGCGCCCAC 60.826 66.667 26.77 0.00 30.78 4.61
8270 8387 4.115199 ATCTCCTTGGCGCCCACC 62.115 66.667 26.77 0.00 30.78 4.61
8278 8407 4.101448 GGCGCCCACCTGACATCT 62.101 66.667 18.11 0.00 0.00 2.90
8282 8411 1.948611 GCGCCCACCTGACATCTTAAA 60.949 52.381 0.00 0.00 0.00 1.52
8289 8418 5.278957 CCCACCTGACATCTTAAAAGTTTGG 60.279 44.000 0.00 0.00 0.00 3.28
8297 8426 8.141268 TGACATCTTAAAAGTTTGGAACCAATC 58.859 33.333 7.12 6.80 35.70 2.67
8308 8437 3.295093 TGGAACCAATCTGAAGCACAAA 58.705 40.909 0.00 0.00 0.00 2.83
8314 8443 5.486526 ACCAATCTGAAGCACAAAAACAAA 58.513 33.333 0.00 0.00 0.00 2.83
8315 8444 6.114767 ACCAATCTGAAGCACAAAAACAAAT 58.885 32.000 0.00 0.00 0.00 2.32
8319 8448 9.985318 CAATCTGAAGCACAAAAACAAATAAAA 57.015 25.926 0.00 0.00 0.00 1.52
8339 8468 3.131709 ACAACAGTTCCAGATCACCAG 57.868 47.619 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 1.002430 TGCTTGACGCCAGAGAGAATT 59.998 47.619 0.00 0.00 38.05 2.17
120 121 2.250939 CGCCTTCGTGGTTGCTTGA 61.251 57.895 0.00 0.00 38.35 3.02
151 152 4.881850 AGTTTCTTCATCGAACCTTGTGTT 59.118 37.500 0.00 0.00 40.81 3.32
165 166 4.214119 CCTTTCGCTTCATCAGTTTCTTCA 59.786 41.667 0.00 0.00 0.00 3.02
241 243 3.584052 CTACGAGGTCGAGGCCGG 61.584 72.222 6.35 0.00 43.02 6.13
244 246 1.516603 GTTGCTACGAGGTCGAGGC 60.517 63.158 6.35 9.87 43.02 4.70
247 249 1.170442 TGATGTTGCTACGAGGTCGA 58.830 50.000 6.35 0.00 43.02 4.20
260 262 6.406370 TCTCGGTTGACTAATTGATGATGTT 58.594 36.000 0.00 0.00 0.00 2.71
290 292 4.993705 ATGGGTGATTGGTTATATCGGT 57.006 40.909 0.00 0.00 0.00 4.69
336 338 1.172812 AGTTTTCGGCTTCCAGTGCC 61.173 55.000 0.00 0.00 46.42 5.01
341 343 5.007034 TCAAATGATAGTTTTCGGCTTCCA 58.993 37.500 0.00 0.00 0.00 3.53
345 347 3.181510 GCGTCAAATGATAGTTTTCGGCT 60.182 43.478 0.00 0.00 0.00 5.52
355 357 3.049912 CCGATCTTCGCGTCAAATGATA 58.950 45.455 5.77 0.00 38.82 2.15
357 359 1.277326 CCGATCTTCGCGTCAAATGA 58.723 50.000 5.77 0.00 38.82 2.57
364 366 2.203972 TTTCCGACCGATCTTCGCGT 62.204 55.000 5.77 0.00 38.82 6.01
371 373 3.824414 ATTTGTTGTTTCCGACCGATC 57.176 42.857 0.00 0.00 0.00 3.69
394 397 2.732289 GCATTGGCGGGTATCCATT 58.268 52.632 0.00 0.00 32.92 3.16
470 475 4.243383 GTTGCAAACGTCCCATGC 57.757 55.556 0.00 8.19 36.92 4.06
486 491 3.569701 ACCTGCAATCGAAGTCATTTTGT 59.430 39.130 0.00 0.00 0.00 2.83
499 511 4.440525 CCATGGTATGTTGAACCTGCAATC 60.441 45.833 2.57 0.00 37.91 2.67
506 518 2.362077 GGATGCCATGGTATGTTGAACC 59.638 50.000 21.11 9.99 37.53 3.62
560 572 2.101249 CCCATTCCCATGATTCAAACCG 59.899 50.000 0.00 0.00 31.07 4.44
574 586 4.510167 TCCTTTGATTCTCTCCCATTCC 57.490 45.455 0.00 0.00 0.00 3.01
575 587 5.588246 GTCTTCCTTTGATTCTCTCCCATTC 59.412 44.000 0.00 0.00 0.00 2.67
576 588 5.504853 GTCTTCCTTTGATTCTCTCCCATT 58.495 41.667 0.00 0.00 0.00 3.16
577 589 4.080072 GGTCTTCCTTTGATTCTCTCCCAT 60.080 45.833 0.00 0.00 0.00 4.00
578 590 3.264450 GGTCTTCCTTTGATTCTCTCCCA 59.736 47.826 0.00 0.00 0.00 4.37
579 591 3.521531 AGGTCTTCCTTTGATTCTCTCCC 59.478 47.826 0.00 0.00 42.12 4.30
580 592 4.835284 AGGTCTTCCTTTGATTCTCTCC 57.165 45.455 0.00 0.00 42.12 3.71
598 610 2.796557 GCTTCCTTGCCTTCTTTAGGT 58.203 47.619 0.00 0.00 46.61 3.08
770 790 3.802139 GTGTATGTATGTATGTGCTGCGT 59.198 43.478 0.00 0.00 0.00 5.24
925 957 4.671590 TCGAGGTCTGGTGGCGGA 62.672 66.667 0.00 0.00 0.00 5.54
1050 1082 1.202177 CGGATTGAACCAAATCTGCGG 60.202 52.381 0.00 0.00 36.42 5.69
1113 1150 1.266175 GAGCTGGATTGCATCGGATTG 59.734 52.381 0.00 0.00 34.99 2.67
1168 1205 1.209504 TCTAACAAATCGGCCCTCCAG 59.790 52.381 0.00 0.00 0.00 3.86
1220 1257 8.920665 CCTGAGATCTCGAATATTCACATAAAC 58.079 37.037 17.76 2.98 0.00 2.01
1269 1306 6.475402 GGACCAAAAACAAAATCCATATAGCG 59.525 38.462 0.00 0.00 0.00 4.26
1509 1546 9.554724 AAAGTCGCATATATACACAAACAAAAG 57.445 29.630 0.00 0.00 0.00 2.27
1522 1559 6.038603 ACACAAATCTGCAAAGTCGCATATAT 59.961 34.615 0.00 0.00 42.06 0.86
1524 1561 4.156556 ACACAAATCTGCAAAGTCGCATAT 59.843 37.500 0.00 0.00 42.06 1.78
1526 1563 2.294233 ACACAAATCTGCAAAGTCGCAT 59.706 40.909 0.00 0.00 42.06 4.73
1534 1581 1.337703 GCACCAGACACAAATCTGCAA 59.662 47.619 0.00 0.00 44.12 4.08
1681 1729 9.453572 AGAGAATGCATATAAAGTGAAAGTTCA 57.546 29.630 0.00 0.00 34.20 3.18
1773 1821 5.446473 CGTGATACATGAGGAAAGAGTTTGC 60.446 44.000 0.00 0.00 0.00 3.68
1927 1975 6.153000 GGTTTCTCTGGATAACTCTGACACTA 59.847 42.308 0.00 0.00 0.00 2.74
2002 2050 5.416952 CCAGATGCAAGGAAAGAATAGTGTT 59.583 40.000 0.00 0.00 0.00 3.32
2051 2099 3.195610 TGTCACTCGGCATAACAGAATCT 59.804 43.478 0.00 0.00 0.00 2.40
2062 2110 2.805671 CAATTTACAGTGTCACTCGGCA 59.194 45.455 1.37 0.00 0.00 5.69
2120 2169 1.066430 CCCTGCGCTCAAGTACCTAAA 60.066 52.381 9.73 0.00 0.00 1.85
2121 2170 0.535335 CCCTGCGCTCAAGTACCTAA 59.465 55.000 9.73 0.00 0.00 2.69
2122 2171 0.323999 TCCCTGCGCTCAAGTACCTA 60.324 55.000 9.73 0.00 0.00 3.08
2163 2212 5.414765 ACGAGAAACTGAAACCTTCAAAACT 59.585 36.000 0.00 0.00 39.58 2.66
2215 2264 2.315901 GCTGATACCGTTGTTTGTTGC 58.684 47.619 0.00 0.00 0.00 4.17
2252 2301 8.058667 TGCATATTGAAAAGATCATCAGTGTT 57.941 30.769 0.00 0.00 38.03 3.32
2281 2330 4.808895 TGTGATTGTAGCATCGGACAATAC 59.191 41.667 0.50 1.97 44.35 1.89
2332 2382 5.188948 ACAGGCACCATATAGTACACAAAGA 59.811 40.000 0.00 0.00 0.00 2.52
2416 2466 3.126343 CACCTAATACGCAACCAAACTCC 59.874 47.826 0.00 0.00 0.00 3.85
2468 2518 3.871006 GACATGTCATGTTAGAATCGGCA 59.129 43.478 21.07 0.00 45.03 5.69
2583 2633 7.447238 TCGGCAATTATTTTAGCCTATAAAGCT 59.553 33.333 0.00 2.73 44.85 3.74
2584 2634 7.590279 TCGGCAATTATTTTAGCCTATAAAGC 58.410 34.615 0.00 0.00 44.85 3.51
2587 2637 9.515226 AGAATCGGCAATTATTTTAGCCTATAA 57.485 29.630 0.00 0.00 44.85 0.98
2589 2639 9.515226 TTAGAATCGGCAATTATTTTAGCCTAT 57.485 29.630 0.00 0.00 44.85 2.57
2590 2640 8.780249 GTTAGAATCGGCAATTATTTTAGCCTA 58.220 33.333 0.00 0.00 44.85 3.93
2591 2641 7.284489 TGTTAGAATCGGCAATTATTTTAGCCT 59.716 33.333 0.00 0.00 44.85 4.58
2592 2642 7.422399 TGTTAGAATCGGCAATTATTTTAGCC 58.578 34.615 0.00 0.00 43.61 3.93
2593 2643 8.905702 CATGTTAGAATCGGCAATTATTTTAGC 58.094 33.333 0.00 0.00 0.00 3.09
2595 2645 9.944663 GTCATGTTAGAATCGGCAATTATTTTA 57.055 29.630 0.00 0.00 0.00 1.52
2596 2646 8.465999 TGTCATGTTAGAATCGGCAATTATTTT 58.534 29.630 0.00 0.00 0.00 1.82
2597 2647 7.995289 TGTCATGTTAGAATCGGCAATTATTT 58.005 30.769 0.00 0.00 0.00 1.40
2598 2648 7.566760 TGTCATGTTAGAATCGGCAATTATT 57.433 32.000 0.00 0.00 0.00 1.40
2599 2649 7.229306 ACATGTCATGTTAGAATCGGCAATTAT 59.771 33.333 12.87 0.00 41.63 1.28
2600 2650 6.542005 ACATGTCATGTTAGAATCGGCAATTA 59.458 34.615 12.87 0.00 41.63 1.40
2601 2651 5.357878 ACATGTCATGTTAGAATCGGCAATT 59.642 36.000 12.87 0.00 41.63 2.32
2602 2652 4.883585 ACATGTCATGTTAGAATCGGCAAT 59.116 37.500 12.87 0.00 41.63 3.56
2603 2653 4.260985 ACATGTCATGTTAGAATCGGCAA 58.739 39.130 12.87 0.00 41.63 4.52
2604 2654 3.871006 GACATGTCATGTTAGAATCGGCA 59.129 43.478 21.07 0.00 45.03 5.69
2605 2655 3.248602 GGACATGTCATGTTAGAATCGGC 59.751 47.826 26.47 3.75 45.03 5.54
2606 2656 4.697514 AGGACATGTCATGTTAGAATCGG 58.302 43.478 26.47 0.00 45.03 4.18
2607 2657 5.812127 TCAAGGACATGTCATGTTAGAATCG 59.188 40.000 26.47 5.79 45.03 3.34
2608 2658 7.798596 ATCAAGGACATGTCATGTTAGAATC 57.201 36.000 26.47 5.80 45.03 2.52
2609 2659 8.267183 TGTATCAAGGACATGTCATGTTAGAAT 58.733 33.333 26.47 14.79 45.03 2.40
2610 2660 7.619965 TGTATCAAGGACATGTCATGTTAGAA 58.380 34.615 26.47 9.34 45.03 2.10
2611 2661 7.181569 TGTATCAAGGACATGTCATGTTAGA 57.818 36.000 26.47 17.45 45.03 2.10
2612 2662 7.201644 GGTTGTATCAAGGACATGTCATGTTAG 60.202 40.741 26.47 11.34 45.03 2.34
2613 2663 6.597672 GGTTGTATCAAGGACATGTCATGTTA 59.402 38.462 26.47 18.74 45.03 2.41
2614 2664 5.415701 GGTTGTATCAAGGACATGTCATGTT 59.584 40.000 26.47 19.61 45.03 2.71
2616 2666 4.336433 GGGTTGTATCAAGGACATGTCATG 59.664 45.833 26.47 22.55 0.00 3.07
2617 2667 4.228210 AGGGTTGTATCAAGGACATGTCAT 59.772 41.667 26.47 18.11 0.00 3.06
2618 2668 3.587061 AGGGTTGTATCAAGGACATGTCA 59.413 43.478 26.47 7.13 0.00 3.58
2619 2669 3.941483 CAGGGTTGTATCAAGGACATGTC 59.059 47.826 17.91 17.91 0.00 3.06
2620 2670 3.330701 ACAGGGTTGTATCAAGGACATGT 59.669 43.478 0.00 0.00 35.25 3.21
2621 2671 3.941483 GACAGGGTTGTATCAAGGACATG 59.059 47.826 0.00 0.00 37.76 3.21
2622 2672 3.587061 TGACAGGGTTGTATCAAGGACAT 59.413 43.478 0.00 0.00 37.76 3.06
2623 2673 2.976185 TGACAGGGTTGTATCAAGGACA 59.024 45.455 0.00 0.00 37.76 4.02
2624 2674 3.695830 TGACAGGGTTGTATCAAGGAC 57.304 47.619 0.00 0.00 37.76 3.85
2625 2675 4.927267 ATTGACAGGGTTGTATCAAGGA 57.073 40.909 0.00 0.00 37.76 3.36
2626 2676 5.476599 TGAAATTGACAGGGTTGTATCAAGG 59.523 40.000 0.00 0.00 37.76 3.61
2627 2677 6.573664 TGAAATTGACAGGGTTGTATCAAG 57.426 37.500 0.00 0.00 37.76 3.02
2628 2678 6.573664 CTGAAATTGACAGGGTTGTATCAA 57.426 37.500 5.36 0.00 37.76 2.57
2639 2689 8.557864 CAGATTAGATTAGCCTGAAATTGACAG 58.442 37.037 6.08 6.08 35.43 3.51
2640 2690 8.267183 TCAGATTAGATTAGCCTGAAATTGACA 58.733 33.333 0.00 0.00 31.72 3.58
2641 2691 8.668510 TCAGATTAGATTAGCCTGAAATTGAC 57.331 34.615 0.00 0.00 31.72 3.18
2642 2692 9.857656 ATTCAGATTAGATTAGCCTGAAATTGA 57.142 29.630 0.00 0.00 44.03 2.57
2647 2697 9.685276 TCAAAATTCAGATTAGATTAGCCTGAA 57.315 29.630 0.00 0.00 44.65 3.02
2648 2698 9.113838 GTCAAAATTCAGATTAGATTAGCCTGA 57.886 33.333 0.00 0.00 32.67 3.86
2649 2699 9.118300 AGTCAAAATTCAGATTAGATTAGCCTG 57.882 33.333 0.00 0.00 0.00 4.85
2650 2700 9.118300 CAGTCAAAATTCAGATTAGATTAGCCT 57.882 33.333 0.00 0.00 0.00 4.58
2651 2701 9.113838 TCAGTCAAAATTCAGATTAGATTAGCC 57.886 33.333 0.00 0.00 0.00 3.93
2654 2704 9.618890 CCCTCAGTCAAAATTCAGATTAGATTA 57.381 33.333 0.00 0.00 0.00 1.75
2655 2705 7.067981 GCCCTCAGTCAAAATTCAGATTAGATT 59.932 37.037 0.00 0.00 0.00 2.40
2656 2706 6.545298 GCCCTCAGTCAAAATTCAGATTAGAT 59.455 38.462 0.00 0.00 0.00 1.98
2657 2707 5.882557 GCCCTCAGTCAAAATTCAGATTAGA 59.117 40.000 0.00 0.00 0.00 2.10
2658 2708 5.884792 AGCCCTCAGTCAAAATTCAGATTAG 59.115 40.000 0.00 0.00 0.00 1.73
2659 2709 5.649395 CAGCCCTCAGTCAAAATTCAGATTA 59.351 40.000 0.00 0.00 0.00 1.75
2660 2710 4.461781 CAGCCCTCAGTCAAAATTCAGATT 59.538 41.667 0.00 0.00 0.00 2.40
2661 2711 4.015084 CAGCCCTCAGTCAAAATTCAGAT 58.985 43.478 0.00 0.00 0.00 2.90
2662 2712 3.415212 CAGCCCTCAGTCAAAATTCAGA 58.585 45.455 0.00 0.00 0.00 3.27
2663 2713 2.094854 GCAGCCCTCAGTCAAAATTCAG 60.095 50.000 0.00 0.00 0.00 3.02
2664 2714 1.888512 GCAGCCCTCAGTCAAAATTCA 59.111 47.619 0.00 0.00 0.00 2.57
2665 2715 2.165998 AGCAGCCCTCAGTCAAAATTC 58.834 47.619 0.00 0.00 0.00 2.17
2666 2716 2.299326 AGCAGCCCTCAGTCAAAATT 57.701 45.000 0.00 0.00 0.00 1.82
2667 2717 2.573462 TCTAGCAGCCCTCAGTCAAAAT 59.427 45.455 0.00 0.00 0.00 1.82
2668 2718 1.977854 TCTAGCAGCCCTCAGTCAAAA 59.022 47.619 0.00 0.00 0.00 2.44
2669 2719 1.644509 TCTAGCAGCCCTCAGTCAAA 58.355 50.000 0.00 0.00 0.00 2.69
2670 2720 1.644509 TTCTAGCAGCCCTCAGTCAA 58.355 50.000 0.00 0.00 0.00 3.18
2671 2721 1.871418 ATTCTAGCAGCCCTCAGTCA 58.129 50.000 0.00 0.00 0.00 3.41
2672 2722 4.615588 AATATTCTAGCAGCCCTCAGTC 57.384 45.455 0.00 0.00 0.00 3.51
2673 2723 6.127196 GCTATAATATTCTAGCAGCCCTCAGT 60.127 42.308 21.69 0.00 40.07 3.41
2674 2724 6.127225 TGCTATAATATTCTAGCAGCCCTCAG 60.127 42.308 24.15 0.00 43.97 3.35
2675 2725 5.721480 TGCTATAATATTCTAGCAGCCCTCA 59.279 40.000 24.15 6.95 43.97 3.86
2676 2726 6.227298 TGCTATAATATTCTAGCAGCCCTC 57.773 41.667 24.15 3.16 43.97 4.30
2695 2745 8.397906 GCTATCAAATGTTCTTTACACATGCTA 58.602 33.333 0.00 0.00 40.19 3.49
2696 2746 7.121759 AGCTATCAAATGTTCTTTACACATGCT 59.878 33.333 0.00 0.00 40.19 3.79
2697 2747 7.253422 AGCTATCAAATGTTCTTTACACATGC 58.747 34.615 0.00 0.00 40.19 4.06
2698 2748 9.630098 AAAGCTATCAAATGTTCTTTACACATG 57.370 29.630 0.00 0.00 40.19 3.21
2705 2755 8.633561 GGCCTATAAAGCTATCAAATGTTCTTT 58.366 33.333 0.00 0.00 0.00 2.52
2706 2756 7.779798 TGGCCTATAAAGCTATCAAATGTTCTT 59.220 33.333 3.32 0.00 0.00 2.52
2707 2757 7.229506 GTGGCCTATAAAGCTATCAAATGTTCT 59.770 37.037 3.32 0.00 0.00 3.01
2708 2758 7.013274 TGTGGCCTATAAAGCTATCAAATGTTC 59.987 37.037 3.32 0.00 0.00 3.18
2709 2759 6.833416 TGTGGCCTATAAAGCTATCAAATGTT 59.167 34.615 3.32 0.00 0.00 2.71
2710 2760 6.364701 TGTGGCCTATAAAGCTATCAAATGT 58.635 36.000 3.32 0.00 0.00 2.71
2711 2761 6.882610 TGTGGCCTATAAAGCTATCAAATG 57.117 37.500 3.32 0.00 0.00 2.32
2712 2762 7.233632 TCATGTGGCCTATAAAGCTATCAAAT 58.766 34.615 3.32 0.00 0.00 2.32
2713 2763 6.600388 TCATGTGGCCTATAAAGCTATCAAA 58.400 36.000 3.32 0.00 0.00 2.69
2714 2764 6.186420 TCATGTGGCCTATAAAGCTATCAA 57.814 37.500 3.32 0.00 0.00 2.57
2715 2765 5.823861 TCATGTGGCCTATAAAGCTATCA 57.176 39.130 3.32 0.00 0.00 2.15
2716 2766 6.936900 TCTTTCATGTGGCCTATAAAGCTATC 59.063 38.462 3.32 0.00 0.00 2.08
2717 2767 6.841601 TCTTTCATGTGGCCTATAAAGCTAT 58.158 36.000 3.32 0.00 0.00 2.97
2718 2768 6.247229 TCTTTCATGTGGCCTATAAAGCTA 57.753 37.500 3.32 0.00 0.00 3.32
2895 2945 3.264450 ACAATCTACCCTGAGGAAACTGG 59.736 47.826 0.00 0.00 44.43 4.00
2905 2955 4.159879 ACCGAAGAACTACAATCTACCCTG 59.840 45.833 0.00 0.00 0.00 4.45
3126 3178 6.731292 AACTGATGTTTCCTTTAAGCCTTT 57.269 33.333 0.00 0.00 31.37 3.11
3194 3246 2.766263 TCTGGGTAGACATGATGGACAC 59.234 50.000 0.00 0.00 0.00 3.67
3243 3297 6.731467 AGGAACCATACATCTGTATTGGTTT 58.269 36.000 23.16 14.19 43.72 3.27
3287 3341 4.563976 GCATTTGAACACATCTAATGGTGC 59.436 41.667 12.25 0.00 45.56 5.01
3455 3509 3.076621 TGTGCAAAACTGCTAGAGATGG 58.923 45.455 0.00 0.00 35.49 3.51
3457 3511 7.121759 ACAATATTGTGCAAAACTGCTAGAGAT 59.878 33.333 20.19 0.00 40.49 2.75
3680 3735 1.883275 CTATCCTCCTGACTGCCTACG 59.117 57.143 0.00 0.00 0.00 3.51
3929 4008 1.030457 ATTAGTGTAGGGAGACGCCG 58.970 55.000 0.00 0.00 37.63 6.46
3933 4012 2.399580 AGGCCATTAGTGTAGGGAGAC 58.600 52.381 5.01 0.00 0.00 3.36
3975 4054 7.399765 ACATTAGACATCCAAATCCAAATCCAA 59.600 33.333 0.00 0.00 0.00 3.53
4197 4276 1.000955 ACCACCGCACTGTAAGAGAAG 59.999 52.381 0.00 0.00 37.43 2.85
4414 4493 4.444306 CCTGAACTACTGTTTGGAGGTGAA 60.444 45.833 0.00 0.00 36.39 3.18
4560 4639 2.651361 CTCAGTCGCGGTTGTCCT 59.349 61.111 6.13 0.00 0.00 3.85
4600 4679 4.355543 TGCGCCTCTGATTTTGATTTAC 57.644 40.909 4.18 0.00 0.00 2.01
5106 5185 2.364324 ACAACTTCTCGGCTTCTGTGTA 59.636 45.455 0.00 0.00 0.00 2.90
5116 5195 1.512926 CCCAACAGACAACTTCTCGG 58.487 55.000 0.00 0.00 28.96 4.63
5188 5267 3.677648 CTGCACCCAGCTGTTGGC 61.678 66.667 13.81 12.90 46.32 4.52
5464 5543 9.374838 TCGAAGTAGGGTTAATTTCTTTATCAC 57.625 33.333 0.00 0.00 0.00 3.06
5747 5826 3.524789 ACTCATCCCATGGATCAAACTCA 59.475 43.478 15.22 0.00 40.98 3.41
6094 6174 7.407871 GCACAAAAATACGTGAAATACAGAACG 60.408 37.037 0.00 0.00 41.64 3.95
6169 6260 6.908825 TCCTTTAATATGCAAGTGACAACAC 58.091 36.000 0.00 0.00 46.24 3.32
6239 6330 9.507280 CAATAACCTATTTACATGAGTTGCAAG 57.493 33.333 0.00 0.00 0.00 4.01
6330 6432 4.367039 TTTTAGACCTTGAAGACCCTGG 57.633 45.455 0.00 0.00 0.00 4.45
6392 6494 3.212685 CTGAGATGAAAATCCAGGAGGC 58.787 50.000 0.00 0.00 33.74 4.70
6535 6637 5.862845 GATTAGATCCAGCCTGAGATGAAA 58.137 41.667 0.00 0.00 0.00 2.69
6536 6638 5.480642 GATTAGATCCAGCCTGAGATGAA 57.519 43.478 0.00 0.00 0.00 2.57
6562 6664 2.611292 GCCTGAGATGAAAATCCGTGAG 59.389 50.000 0.00 0.00 0.00 3.51
6563 6665 2.237143 AGCCTGAGATGAAAATCCGTGA 59.763 45.455 0.00 0.00 0.00 4.35
6564 6666 2.353889 CAGCCTGAGATGAAAATCCGTG 59.646 50.000 0.00 0.00 0.00 4.94
6565 6667 2.636830 CAGCCTGAGATGAAAATCCGT 58.363 47.619 0.00 0.00 0.00 4.69
6566 6668 1.945394 CCAGCCTGAGATGAAAATCCG 59.055 52.381 0.00 0.00 0.00 4.18
6567 6669 2.305009 CCCAGCCTGAGATGAAAATCC 58.695 52.381 0.00 0.00 0.00 3.01
6568 6670 2.948315 GACCCAGCCTGAGATGAAAATC 59.052 50.000 0.00 0.00 0.00 2.17
6569 6671 2.681976 CGACCCAGCCTGAGATGAAAAT 60.682 50.000 0.00 0.00 0.00 1.82
6570 6672 1.339055 CGACCCAGCCTGAGATGAAAA 60.339 52.381 0.00 0.00 0.00 2.29
6602 6704 7.147976 GGGATGAAAATCCAGAATTAAATCCG 58.852 38.462 7.05 0.00 42.49 4.18
6710 6812 3.051581 ACCTGAGAATGTGGAGCCATAT 58.948 45.455 0.00 0.00 0.00 1.78
6750 6852 7.049799 TGATTGGTTTTGGAGAAGTAAAAGG 57.950 36.000 0.00 0.00 0.00 3.11
6756 6858 8.869109 TGAAATTATGATTGGTTTTGGAGAAGT 58.131 29.630 0.00 0.00 0.00 3.01
6783 6885 6.529125 CCAAGCATCACAAATGTATGAGAAAC 59.471 38.462 0.00 0.00 0.00 2.78
7502 7607 3.069586 AGTTCAAACTCAGGATCGTGTCA 59.930 43.478 14.67 0.00 32.86 3.58
7569 7674 9.251792 GGACACACACACGTATATATCAAATTA 57.748 33.333 0.00 0.00 0.00 1.40
7581 7686 0.831966 AAAGGGGACACACACACGTA 59.168 50.000 0.00 0.00 0.00 3.57
7582 7687 0.034863 AAAAGGGGACACACACACGT 60.035 50.000 0.00 0.00 0.00 4.49
7583 7688 0.380378 CAAAAGGGGACACACACACG 59.620 55.000 0.00 0.00 0.00 4.49
7592 7697 1.681264 CACACAAGGACAAAAGGGGAC 59.319 52.381 0.00 0.00 0.00 4.46
7593 7698 1.566703 TCACACAAGGACAAAAGGGGA 59.433 47.619 0.00 0.00 0.00 4.81
7596 7701 8.960591 AGATTATAATCACACAAGGACAAAAGG 58.039 33.333 24.00 0.00 37.89 3.11
7621 7726 3.376859 TCCACAACACTACACAAAGCAAG 59.623 43.478 0.00 0.00 0.00 4.01
7633 7738 1.133823 TCCAGCAATGTCCACAACACT 60.134 47.619 0.00 0.00 41.75 3.55
7642 7747 1.430632 CGGCACATCCAGCAATGTC 59.569 57.895 0.00 0.00 37.78 3.06
7645 7750 3.142838 GCCGGCACATCCAGCAAT 61.143 61.111 24.80 0.00 38.17 3.56
7673 7778 1.372128 GCAAAGGAACAAGCAGCGG 60.372 57.895 0.00 0.00 0.00 5.52
7679 7784 3.318839 TGATGACCAAGCAAAGGAACAAG 59.681 43.478 0.00 0.00 0.00 3.16
7687 7793 2.309755 AGGATCCTGATGACCAAGCAAA 59.690 45.455 15.29 0.00 0.00 3.68
7754 7864 3.118223 TCGCACCCAAACCATATGTATCA 60.118 43.478 1.24 0.00 0.00 2.15
7805 7915 4.270325 GGCGAAATAGAACAGACGCTAAAT 59.730 41.667 0.00 0.00 44.31 1.40
7814 7924 4.572389 AGCTACAATGGCGAAATAGAACAG 59.428 41.667 0.00 0.00 34.52 3.16
7831 7943 6.205784 GCAAGAAAACATTTACACAGCTACA 58.794 36.000 0.00 0.00 0.00 2.74
7864 7976 4.950475 TCATGTACAAAGGAGTCTCTCGAT 59.050 41.667 0.00 0.00 0.00 3.59
7957 8072 6.128336 TGTCACATTTGCTTTCAAGTTTTTGG 60.128 34.615 0.00 0.00 34.97 3.28
7965 8080 6.751157 AGATGATTGTCACATTTGCTTTCAA 58.249 32.000 0.00 0.00 0.00 2.69
7994 8109 4.734398 AGCCAAACAATTGTCAGTTGAA 57.266 36.364 18.72 0.00 34.60 2.69
8015 8130 7.687941 AGTCAAAAACTTTCTTCAGTCTGAA 57.312 32.000 14.54 14.54 33.03 3.02
8019 8134 9.788960 AAATGTAGTCAAAAACTTTCTTCAGTC 57.211 29.630 0.00 0.00 39.55 3.51
8027 8142 8.716909 CAAACACCAAATGTAGTCAAAAACTTT 58.283 29.630 0.00 0.00 42.31 2.66
8047 8163 6.309737 AGCACGTAATAGCTAGTAACAAACAC 59.690 38.462 1.83 0.00 39.78 3.32
8063 8179 3.319137 TGCTTGAGAAGAGCACGTAAT 57.681 42.857 0.00 0.00 44.63 1.89
8071 8187 4.564940 ACAAAAGCTTGCTTGAGAAGAG 57.435 40.909 16.01 0.00 35.84 2.85
8073 8189 6.005583 TGATACAAAAGCTTGCTTGAGAAG 57.994 37.500 16.01 0.93 35.84 2.85
8109 8226 4.142249 ACCACGTCTGATCAATCGTTATCA 60.142 41.667 18.01 0.00 34.30 2.15
8110 8227 4.360563 ACCACGTCTGATCAATCGTTATC 58.639 43.478 18.01 0.00 34.30 1.75
8113 8230 2.743636 ACCACGTCTGATCAATCGTT 57.256 45.000 18.01 6.46 34.30 3.85
8114 8231 2.231478 AGAACCACGTCTGATCAATCGT 59.769 45.455 15.81 15.81 36.99 3.73
8115 8232 2.600420 CAGAACCACGTCTGATCAATCG 59.400 50.000 14.75 14.75 46.76 3.34
8116 8233 3.589988 ACAGAACCACGTCTGATCAATC 58.410 45.455 8.80 0.00 46.76 2.67
8117 8234 3.685139 ACAGAACCACGTCTGATCAAT 57.315 42.857 8.80 0.00 46.76 2.57
8118 8235 3.469008 AACAGAACCACGTCTGATCAA 57.531 42.857 8.80 0.00 46.76 2.57
8119 8236 3.572682 ACTAACAGAACCACGTCTGATCA 59.427 43.478 8.80 0.00 46.76 2.92
8120 8237 4.175787 ACTAACAGAACCACGTCTGATC 57.824 45.455 8.80 0.00 46.76 2.92
8121 8238 4.602340 AACTAACAGAACCACGTCTGAT 57.398 40.909 8.80 0.07 46.76 2.90
8122 8239 4.395959 AAACTAACAGAACCACGTCTGA 57.604 40.909 8.80 0.00 46.76 3.27
8124 8241 4.761975 TCAAAACTAACAGAACCACGTCT 58.238 39.130 0.00 0.00 0.00 4.18
8128 8245 6.861065 TCATCTCAAAACTAACAGAACCAC 57.139 37.500 0.00 0.00 0.00 4.16
8132 8249 8.567948 GGAATGTTCATCTCAAAACTAACAGAA 58.432 33.333 0.00 0.00 31.09 3.02
8134 8251 8.103948 AGGAATGTTCATCTCAAAACTAACAG 57.896 34.615 0.00 0.00 31.09 3.16
8161 8278 3.550030 CCGGATTCAATTTCATAACGGCC 60.550 47.826 0.00 0.00 31.93 6.13
8167 8284 3.316029 CAGCTGCCGGATTCAATTTCATA 59.684 43.478 5.05 0.00 0.00 2.15
8182 8299 1.537562 GCCAAATAAGATGCAGCTGCC 60.538 52.381 34.64 20.80 41.18 4.85
8187 8304 2.419673 TCACACGCCAAATAAGATGCAG 59.580 45.455 0.00 0.00 0.00 4.41
8189 8306 3.698029 ATCACACGCCAAATAAGATGC 57.302 42.857 0.00 0.00 0.00 3.91
8215 8332 1.145945 TGACAGTATGGGGGTTTGCAA 59.854 47.619 0.00 0.00 43.62 4.08
8225 8342 6.021596 GCAAATAGAAAACGTGACAGTATGG 58.978 40.000 0.00 0.00 43.62 2.74
8229 8346 3.252458 GGGCAAATAGAAAACGTGACAGT 59.748 43.478 0.00 0.00 0.00 3.55
8235 8352 3.694566 GAGATGGGGCAAATAGAAAACGT 59.305 43.478 0.00 0.00 0.00 3.99
8236 8353 3.066760 GGAGATGGGGCAAATAGAAAACG 59.933 47.826 0.00 0.00 0.00 3.60
8262 8379 0.392461 TTAAGATGTCAGGTGGGCGC 60.392 55.000 0.00 0.00 0.00 6.53
8264 8381 3.421844 ACTTTTAAGATGTCAGGTGGGC 58.578 45.455 0.00 0.00 0.00 5.36
8268 8385 6.040504 GGTTCCAAACTTTTAAGATGTCAGGT 59.959 38.462 0.00 0.00 0.00 4.00
8269 8386 6.040391 TGGTTCCAAACTTTTAAGATGTCAGG 59.960 38.462 0.00 0.00 0.00 3.86
8270 8387 7.038154 TGGTTCCAAACTTTTAAGATGTCAG 57.962 36.000 0.00 0.00 0.00 3.51
8278 8407 6.983890 GCTTCAGATTGGTTCCAAACTTTTAA 59.016 34.615 10.84 6.36 28.78 1.52
8282 8411 3.960102 TGCTTCAGATTGGTTCCAAACTT 59.040 39.130 10.84 0.00 28.78 2.66
8289 8418 5.108517 TGTTTTTGTGCTTCAGATTGGTTC 58.891 37.500 0.00 0.00 0.00 3.62
8297 8426 9.049974 GTTGTTTTATTTGTTTTTGTGCTTCAG 57.950 29.630 0.00 0.00 0.00 3.02
8308 8437 9.313118 GATCTGGAACTGTTGTTTTATTTGTTT 57.687 29.630 0.00 0.00 36.39 2.83
8314 8443 6.068010 TGGTGATCTGGAACTGTTGTTTTAT 58.932 36.000 0.00 0.00 36.39 1.40
8315 8444 5.441500 TGGTGATCTGGAACTGTTGTTTTA 58.558 37.500 0.00 0.00 36.39 1.52
8319 8448 2.439507 ACTGGTGATCTGGAACTGTTGT 59.560 45.455 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.