Multiple sequence alignment - TraesCS5D01G161800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G161800 chr5D 100.000 8386 0 0 1 8386 252613277 252621662 0.000000e+00 15487.0
1 TraesCS5D01G161800 chr5D 88.571 105 12 0 2403 2507 111788747 111788643 2.460000e-25 128.0
2 TraesCS5D01G161800 chr5A 94.663 5940 207 49 2505 8386 335291456 335297343 0.000000e+00 9112.0
3 TraesCS5D01G161800 chr5A 93.920 1842 69 21 606 2423 335289635 335291457 0.000000e+00 2741.0
4 TraesCS5D01G161800 chr5A 79.138 580 63 21 1 555 335289063 335289609 1.730000e-91 348.0
5 TraesCS5D01G161800 chr5A 100.000 31 0 0 2396 2426 77328767 77328797 3.270000e-04 58.4
6 TraesCS5D01G161800 chr5A 100.000 28 0 0 2399 2426 196252125 196252098 1.500000e-02 52.8
7 TraesCS5D01G161800 chr5B 95.833 2736 77 13 2526 5238 285037870 285040591 0.000000e+00 4386.0
8 TraesCS5D01G161800 chr5B 93.965 2237 69 24 5212 7431 285040642 285042829 0.000000e+00 3323.0
9 TraesCS5D01G161800 chr5B 90.953 2067 87 42 402 2423 285035840 285037851 0.000000e+00 2689.0
10 TraesCS5D01G161800 chr5B 91.290 884 45 16 7516 8386 285042864 285043728 0.000000e+00 1177.0
11 TraesCS5D01G161800 chr5B 95.098 408 18 1 1 408 285034524 285034929 7.100000e-180 641.0
12 TraesCS5D01G161800 chr5B 90.152 132 11 2 2507 2637 243851142 243851012 4.020000e-38 171.0
13 TraesCS5D01G161800 chr5B 94.382 89 5 0 2419 2507 296852665 296852577 4.080000e-28 137.0
14 TraesCS5D01G161800 chr1A 91.777 377 26 4 3687 4063 7517886 7517515 3.470000e-143 520.0
15 TraesCS5D01G161800 chr1A 91.111 135 11 1 2505 2638 395177582 395177448 1.860000e-41 182.0
16 TraesCS5D01G161800 chr1A 91.111 135 9 3 2505 2638 98236430 98236298 6.690000e-41 180.0
17 TraesCS5D01G161800 chr1A 91.129 124 9 2 4045 4168 7518771 7518650 5.210000e-37 167.0
18 TraesCS5D01G161800 chr7B 82.663 398 48 18 5225 5611 712489926 712490313 4.850000e-87 333.0
19 TraesCS5D01G161800 chr6A 82.368 397 49 15 5225 5611 602228077 602227692 8.120000e-85 326.0
20 TraesCS5D01G161800 chr6A 91.667 84 6 1 4265 4347 197863389 197863306 1.910000e-21 115.0
21 TraesCS5D01G161800 chr7A 81.699 306 35 13 4230 4532 38080937 38080650 1.410000e-57 235.0
22 TraesCS5D01G161800 chr3B 82.418 273 28 6 4265 4532 397324900 397324643 3.940000e-53 220.0
23 TraesCS5D01G161800 chr7D 91.447 152 6 4 3887 4033 563292011 563291862 1.430000e-47 202.0
24 TraesCS5D01G161800 chr7D 94.262 122 7 0 4048 4169 563291815 563291694 4.000000e-43 187.0
25 TraesCS5D01G161800 chr7D 89.630 135 13 1 2505 2638 197927141 197927007 4.020000e-38 171.0
26 TraesCS5D01G161800 chr7D 95.402 87 4 0 2422 2508 520877093 520877007 1.140000e-28 139.0
27 TraesCS5D01G161800 chr1B 91.111 135 11 1 2505 2638 130540301 130540167 1.860000e-41 182.0
28 TraesCS5D01G161800 chr4B 89.437 142 14 1 2505 2645 78607598 78607457 2.410000e-40 178.0
29 TraesCS5D01G161800 chr4B 89.552 134 13 1 2505 2637 106227428 106227561 1.450000e-37 169.0
30 TraesCS5D01G161800 chr2D 93.407 91 6 0 2417 2507 217496902 217496992 1.470000e-27 135.0
31 TraesCS5D01G161800 chr2D 94.318 88 5 0 2419 2506 341665947 341665860 1.470000e-27 135.0
32 TraesCS5D01G161800 chr1D 91.753 97 5 3 2418 2513 291087509 291087415 1.900000e-26 132.0
33 TraesCS5D01G161800 chr1D 90.816 98 8 1 2413 2509 463165269 463165366 6.830000e-26 130.0
34 TraesCS5D01G161800 chr6B 88.679 106 12 0 2402 2507 290638553 290638448 6.830000e-26 130.0
35 TraesCS5D01G161800 chr6B 88.679 106 12 0 2402 2507 290666392 290666287 6.830000e-26 130.0
36 TraesCS5D01G161800 chr2A 90.476 84 7 1 4265 4347 381734484 381734401 8.900000e-20 110.0
37 TraesCS5D01G161800 chr2A 90.476 84 7 1 4265 4347 381736573 381736490 8.900000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G161800 chr5D 252613277 252621662 8385 False 15487.0 15487 100.000000 1 8386 1 chr5D.!!$F1 8385
1 TraesCS5D01G161800 chr5A 335289063 335297343 8280 False 4067.0 9112 89.240333 1 8386 3 chr5A.!!$F2 8385
2 TraesCS5D01G161800 chr5B 285034524 285043728 9204 False 2443.2 4386 93.427800 1 8386 5 chr5B.!!$F1 8385
3 TraesCS5D01G161800 chr1A 7517515 7518771 1256 True 343.5 520 91.453000 3687 4168 2 chr1A.!!$R3 481


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 1616 1.021920 GCGGAGAGGAAGGTTGCTTC 61.022 60.000 0.00 0.0 0.00 3.86 F
1156 2136 0.108424 GCGTGTGCTCATCCTCTTCT 60.108 55.000 0.00 0.0 38.39 2.85 F
1409 2396 0.179134 CTCAAGATCGACGGACCACC 60.179 60.000 0.00 0.0 0.00 4.61 F
2094 3095 0.312729 GAGCTAGCTTCCTCTACGGC 59.687 60.000 20.42 0.0 0.00 5.68 F
3663 4675 1.151668 CAGCACCCAGAGTTCTTTCG 58.848 55.000 0.00 0.0 0.00 3.46 F
4345 5370 3.245229 TGCACTTACTGATTCCCAACCAT 60.245 43.478 0.00 0.0 0.00 3.55 F
5852 6961 0.031994 CGGCAAAACTTTGTCTGGGG 59.968 55.000 5.34 0.0 40.47 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 2850 0.877071 AAGCTGATGAAACCTGCACG 59.123 50.000 0.00 0.00 0.00 5.34 R
2094 3095 1.062002 ACGTTGCTGTTGTCGAAGTTG 59.938 47.619 0.00 0.00 0.00 3.16 R
2444 3445 1.602377 GTGTAGTGCCAAAAACGCTCT 59.398 47.619 0.00 0.00 34.63 4.09 R
4083 5106 1.135315 CAAAGAGGATGGCAACGCG 59.865 57.895 3.53 3.53 42.51 6.01 R
4666 5694 1.180029 CACTTGGCCCCTGAAGATTG 58.820 55.000 7.51 0.00 0.00 2.67 R
6081 7196 2.182030 CGGTCCTCGGCTCAAGTC 59.818 66.667 0.00 0.00 34.75 3.01 R
7534 8670 0.035439 ATGAACATTCCTCGGCCGTT 60.035 50.000 27.15 10.21 0.00 4.44 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 9.757227 AGACTTATCTCTTAGATTATGCAACAC 57.243 33.333 0.00 0.00 36.20 3.32
90 91 8.264347 TCTTAGATTATGCAACACACATTCCTA 58.736 33.333 0.00 0.00 0.00 2.94
102 105 5.637810 ACACACATTCCTACAAATGTAGTCG 59.362 40.000 16.97 5.46 45.68 4.18
143 146 6.072508 TGTGCTCAAAAGAATAATGTGGAGAC 60.073 38.462 0.00 0.00 0.00 3.36
221 242 8.710835 AAACAATACAAAATCTCAAAAACGGT 57.289 26.923 0.00 0.00 0.00 4.83
243 264 1.792757 TTGCCAGCCTTCCCACATCT 61.793 55.000 0.00 0.00 0.00 2.90
398 419 3.001330 CCGTTCTCTCCAATTTGTATCGC 59.999 47.826 0.00 0.00 0.00 4.58
404 1342 3.392947 TCTCCAATTTGTATCGCCCCATA 59.607 43.478 0.00 0.00 0.00 2.74
471 1409 7.345192 CGGAAAGTAAAATAATCGACTCATGG 58.655 38.462 0.00 0.00 0.00 3.66
473 1411 6.619801 AAGTAAAATAATCGACTCATGGCC 57.380 37.500 0.00 0.00 0.00 5.36
555 1498 3.510531 TCGTCTGGTATGCCTCTAGAT 57.489 47.619 0.16 0.00 35.27 1.98
557 1500 4.325119 TCGTCTGGTATGCCTCTAGATAC 58.675 47.826 0.16 0.00 35.27 2.24
567 1510 4.715713 TGCCTCTAGATACGAGAAGCTAA 58.284 43.478 0.00 0.00 32.56 3.09
568 1511 5.131067 TGCCTCTAGATACGAGAAGCTAAA 58.869 41.667 0.00 0.00 32.56 1.85
588 1545 9.000486 AGCTAAATTATAAAACCGAGCCTAATC 58.000 33.333 0.00 0.00 0.00 1.75
589 1546 8.235226 GCTAAATTATAAAACCGAGCCTAATCC 58.765 37.037 0.00 0.00 0.00 3.01
599 1556 1.847088 GAGCCTAATCCCAACCCTCTT 59.153 52.381 0.00 0.00 0.00 2.85
600 1557 3.046374 GAGCCTAATCCCAACCCTCTTA 58.954 50.000 0.00 0.00 0.00 2.10
601 1558 3.653352 GAGCCTAATCCCAACCCTCTTAT 59.347 47.826 0.00 0.00 0.00 1.73
602 1559 4.839589 AGCCTAATCCCAACCCTCTTATA 58.160 43.478 0.00 0.00 0.00 0.98
657 1616 1.021920 GCGGAGAGGAAGGTTGCTTC 61.022 60.000 0.00 0.00 0.00 3.86
669 1628 2.238395 AGGTTGCTTCTGAGGGATTCTC 59.762 50.000 0.00 0.00 42.74 2.87
874 1845 4.757149 ACACAGTTCCAAGAGAATTAGTGC 59.243 41.667 0.00 0.00 37.10 4.40
879 1850 1.407437 CCAAGAGAATTAGTGCCGCCT 60.407 52.381 0.00 0.00 0.00 5.52
1097 2071 1.883021 GCCCCACTCCGTTGATTTG 59.117 57.895 0.00 0.00 0.00 2.32
1100 2074 1.539827 CCCCACTCCGTTGATTTGTTC 59.460 52.381 0.00 0.00 0.00 3.18
1111 2085 1.146774 TGATTTGTTCCTCCCCAGCAA 59.853 47.619 0.00 0.00 0.00 3.91
1112 2086 2.247358 GATTTGTTCCTCCCCAGCAAA 58.753 47.619 0.00 0.00 34.25 3.68
1114 2088 1.703411 TTGTTCCTCCCCAGCAAAAG 58.297 50.000 0.00 0.00 0.00 2.27
1115 2089 0.178964 TGTTCCTCCCCAGCAAAAGG 60.179 55.000 0.00 0.00 0.00 3.11
1116 2090 0.900182 GTTCCTCCCCAGCAAAAGGG 60.900 60.000 0.00 0.00 46.36 3.95
1134 2114 3.698250 GGCACCAGCATACGGATTA 57.302 52.632 0.00 0.00 44.61 1.75
1150 2130 0.810031 ATTACGGCGTGTGCTCATCC 60.810 55.000 24.86 0.00 42.25 3.51
1156 2136 0.108424 GCGTGTGCTCATCCTCTTCT 60.108 55.000 0.00 0.00 38.39 2.85
1159 2139 2.094286 CGTGTGCTCATCCTCTTCTTCT 60.094 50.000 0.00 0.00 0.00 2.85
1167 2147 5.626578 GCTCATCCTCTTCTTCTAGCTTTGT 60.627 44.000 0.00 0.00 0.00 2.83
1169 2149 5.247110 TCATCCTCTTCTTCTAGCTTTGTGT 59.753 40.000 0.00 0.00 0.00 3.72
1190 2170 1.672356 CGCTGTTCCCACTTCCCAG 60.672 63.158 0.00 0.00 0.00 4.45
1195 2175 1.073319 TTCCCACTTCCCAGACCCA 60.073 57.895 0.00 0.00 0.00 4.51
1197 2177 2.606587 CCCACTTCCCAGACCCAGG 61.607 68.421 0.00 0.00 0.00 4.45
1199 2179 1.133809 CCACTTCCCAGACCCAGGAA 61.134 60.000 0.00 0.00 39.86 3.36
1201 2181 1.134438 ACTTCCCAGACCCAGGAACC 61.134 60.000 0.00 0.00 37.23 3.62
1202 2182 1.073319 TTCCCAGACCCAGGAACCA 60.073 57.895 0.00 0.00 37.23 3.67
1287 2269 4.664688 AACAATGGAGTGAAGGAAGGAT 57.335 40.909 0.00 0.00 0.00 3.24
1302 2284 1.290639 GGATACTAGAGGCTGCCGC 59.709 63.158 15.06 15.06 0.00 6.53
1331 2316 4.382541 TCTCCTCCTGCGCCTGGA 62.383 66.667 16.66 16.66 0.00 3.86
1406 2393 0.526524 CTGCTCAAGATCGACGGACC 60.527 60.000 0.00 0.00 0.00 4.46
1407 2394 1.248101 TGCTCAAGATCGACGGACCA 61.248 55.000 0.00 0.00 0.00 4.02
1408 2395 0.802607 GCTCAAGATCGACGGACCAC 60.803 60.000 0.00 0.00 0.00 4.16
1409 2396 0.179134 CTCAAGATCGACGGACCACC 60.179 60.000 0.00 0.00 0.00 4.61
1448 2438 1.339535 GGTTGCCTAGCTGCTTCTCTT 60.340 52.381 7.79 0.00 0.00 2.85
1672 2669 2.859165 TGCCGAAAGAGTCCAGATTT 57.141 45.000 0.00 0.00 0.00 2.17
1681 2678 6.127591 CGAAAGAGTCCAGATTTCTAAGGAGA 60.128 42.308 0.00 0.00 32.08 3.71
1685 2682 7.563906 AGAGTCCAGATTTCTAAGGAGATTTG 58.436 38.462 0.00 0.00 0.00 2.32
1753 2753 3.499338 TCATCTTCTTGGGCAACACATT 58.501 40.909 0.00 0.00 39.74 2.71
1761 2761 4.955450 TCTTGGGCAACACATTTATGCTAT 59.045 37.500 0.00 0.00 39.94 2.97
1762 2762 6.125719 TCTTGGGCAACACATTTATGCTATA 58.874 36.000 0.00 0.00 39.94 1.31
1763 2763 5.766150 TGGGCAACACATTTATGCTATAC 57.234 39.130 0.00 0.00 39.94 1.47
1788 2788 8.915036 ACTACTTGCTAAGTTATGTATGCTACT 58.085 33.333 6.82 0.00 42.81 2.57
1819 2819 3.167485 TCTAAGTTTAGGGGACGAGCAA 58.833 45.455 0.00 0.00 0.00 3.91
1820 2820 2.943036 AAGTTTAGGGGACGAGCAAA 57.057 45.000 0.00 0.00 0.00 3.68
1821 2821 3.434940 AAGTTTAGGGGACGAGCAAAT 57.565 42.857 0.00 0.00 0.00 2.32
1822 2822 2.987232 AGTTTAGGGGACGAGCAAATC 58.013 47.619 0.00 0.00 0.00 2.17
1823 2823 2.014857 GTTTAGGGGACGAGCAAATCC 58.985 52.381 0.00 0.00 0.00 3.01
1986 2987 2.306847 GTCCAAAACCAGCTCCAGAAA 58.693 47.619 0.00 0.00 0.00 2.52
2021 3022 3.674997 TGAGGTATTTTCCAGCAGACAC 58.325 45.455 0.00 0.00 0.00 3.67
2094 3095 0.312729 GAGCTAGCTTCCTCTACGGC 59.687 60.000 20.42 0.00 0.00 5.68
2115 3116 2.212869 ACTTCGACAACAGCAACGTA 57.787 45.000 0.00 0.00 0.00 3.57
2139 3140 2.356535 CCCCAAGTTTGATCTCTCCCTG 60.357 54.545 0.00 0.00 0.00 4.45
2423 3424 6.002653 ACTACTCCCTCCATTCCAAATTAC 57.997 41.667 0.00 0.00 0.00 1.89
2424 3425 5.731678 ACTACTCCCTCCATTCCAAATTACT 59.268 40.000 0.00 0.00 0.00 2.24
2425 3426 5.536497 ACTCCCTCCATTCCAAATTACTT 57.464 39.130 0.00 0.00 0.00 2.24
2426 3427 5.510430 ACTCCCTCCATTCCAAATTACTTC 58.490 41.667 0.00 0.00 0.00 3.01
2427 3428 4.867086 TCCCTCCATTCCAAATTACTTCC 58.133 43.478 0.00 0.00 0.00 3.46
2428 3429 4.544152 TCCCTCCATTCCAAATTACTTCCT 59.456 41.667 0.00 0.00 0.00 3.36
2429 3430 4.889995 CCCTCCATTCCAAATTACTTCCTC 59.110 45.833 0.00 0.00 0.00 3.71
2430 3431 4.889995 CCTCCATTCCAAATTACTTCCTCC 59.110 45.833 0.00 0.00 0.00 4.30
2431 3432 4.523083 TCCATTCCAAATTACTTCCTCCG 58.477 43.478 0.00 0.00 0.00 4.63
2432 3433 4.018779 TCCATTCCAAATTACTTCCTCCGT 60.019 41.667 0.00 0.00 0.00 4.69
2433 3434 4.335594 CCATTCCAAATTACTTCCTCCGTC 59.664 45.833 0.00 0.00 0.00 4.79
2434 3435 3.622166 TCCAAATTACTTCCTCCGTCC 57.378 47.619 0.00 0.00 0.00 4.79
2435 3436 2.237893 TCCAAATTACTTCCTCCGTCCC 59.762 50.000 0.00 0.00 0.00 4.46
2436 3437 2.026636 CCAAATTACTTCCTCCGTCCCA 60.027 50.000 0.00 0.00 0.00 4.37
2437 3438 3.371595 CCAAATTACTTCCTCCGTCCCAT 60.372 47.826 0.00 0.00 0.00 4.00
2438 3439 4.141574 CCAAATTACTTCCTCCGTCCCATA 60.142 45.833 0.00 0.00 0.00 2.74
2439 3440 5.433526 CAAATTACTTCCTCCGTCCCATAA 58.566 41.667 0.00 0.00 0.00 1.90
2440 3441 5.906772 AATTACTTCCTCCGTCCCATAAT 57.093 39.130 0.00 0.00 0.00 1.28
2441 3442 7.221450 CAAATTACTTCCTCCGTCCCATAATA 58.779 38.462 0.00 0.00 0.00 0.98
2442 3443 7.569599 AATTACTTCCTCCGTCCCATAATAT 57.430 36.000 0.00 0.00 0.00 1.28
2443 3444 8.674925 AATTACTTCCTCCGTCCCATAATATA 57.325 34.615 0.00 0.00 0.00 0.86
2444 3445 8.674925 ATTACTTCCTCCGTCCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
2445 3446 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2446 3447 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
2447 3448 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
2448 3449 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
2449 3450 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2450 3451 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2451 3452 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2452 3453 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2453 3454 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2454 3455 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2455 3456 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2456 3457 7.360361 GTCCCATAATATAAGAGCGTTTTTGG 58.640 38.462 0.00 0.00 0.00 3.28
2457 3458 6.016610 TCCCATAATATAAGAGCGTTTTTGGC 60.017 38.462 0.00 0.00 0.00 4.52
2458 3459 6.238897 CCCATAATATAAGAGCGTTTTTGGCA 60.239 38.462 0.00 0.00 0.00 4.92
2459 3460 6.636850 CCATAATATAAGAGCGTTTTTGGCAC 59.363 38.462 0.00 0.00 0.00 5.01
2460 3461 5.897377 AATATAAGAGCGTTTTTGGCACT 57.103 34.783 0.00 0.00 32.60 4.40
2461 3462 6.995511 AATATAAGAGCGTTTTTGGCACTA 57.004 33.333 0.00 0.00 31.01 2.74
2462 3463 4.680171 ATAAGAGCGTTTTTGGCACTAC 57.320 40.909 0.00 0.00 31.01 2.73
2463 3464 1.961793 AGAGCGTTTTTGGCACTACA 58.038 45.000 0.00 0.00 29.39 2.74
2464 3465 1.602377 AGAGCGTTTTTGGCACTACAC 59.398 47.619 0.00 0.00 29.39 2.90
2465 3466 1.602377 GAGCGTTTTTGGCACTACACT 59.398 47.619 0.00 0.00 0.00 3.55
2466 3467 2.803956 GAGCGTTTTTGGCACTACACTA 59.196 45.455 0.00 0.00 0.00 2.74
2467 3468 2.806244 AGCGTTTTTGGCACTACACTAG 59.194 45.455 0.00 0.00 0.00 2.57
2468 3469 2.546789 GCGTTTTTGGCACTACACTAGT 59.453 45.455 0.00 0.00 40.28 2.57
2469 3470 3.742369 GCGTTTTTGGCACTACACTAGTA 59.258 43.478 0.00 0.00 37.23 1.82
2470 3471 4.376717 GCGTTTTTGGCACTACACTAGTAC 60.377 45.833 0.00 0.00 37.23 2.73
2471 3472 4.151157 CGTTTTTGGCACTACACTAGTACC 59.849 45.833 0.00 0.00 41.68 3.34
2475 3476 4.959560 TGGCACTACACTAGTACCAAAA 57.040 40.909 0.00 0.00 46.53 2.44
2476 3477 5.293319 TGGCACTACACTAGTACCAAAAA 57.707 39.130 0.00 0.00 46.53 1.94
2477 3478 5.058490 TGGCACTACACTAGTACCAAAAAC 58.942 41.667 0.00 0.00 46.53 2.43
2478 3479 4.151157 GGCACTACACTAGTACCAAAAACG 59.849 45.833 0.00 0.00 41.10 3.60
2479 3480 4.376717 GCACTACACTAGTACCAAAAACGC 60.377 45.833 0.00 0.00 37.23 4.84
2480 3481 4.986659 CACTACACTAGTACCAAAAACGCT 59.013 41.667 0.00 0.00 37.23 5.07
2481 3482 5.118203 CACTACACTAGTACCAAAAACGCTC 59.882 44.000 0.00 0.00 37.23 5.03
2482 3483 4.332428 ACACTAGTACCAAAAACGCTCT 57.668 40.909 0.00 0.00 0.00 4.09
2483 3484 4.700700 ACACTAGTACCAAAAACGCTCTT 58.299 39.130 0.00 0.00 0.00 2.85
2484 3485 5.846203 ACACTAGTACCAAAAACGCTCTTA 58.154 37.500 0.00 0.00 0.00 2.10
2485 3486 6.461640 ACACTAGTACCAAAAACGCTCTTAT 58.538 36.000 0.00 0.00 0.00 1.73
2486 3487 7.605449 ACACTAGTACCAAAAACGCTCTTATA 58.395 34.615 0.00 0.00 0.00 0.98
2487 3488 8.255905 ACACTAGTACCAAAAACGCTCTTATAT 58.744 33.333 0.00 0.00 0.00 0.86
2488 3489 9.095065 CACTAGTACCAAAAACGCTCTTATATT 57.905 33.333 0.00 0.00 0.00 1.28
2492 3493 9.052759 AGTACCAAAAACGCTCTTATATTATGG 57.947 33.333 0.00 0.00 0.00 2.74
2493 3494 7.272037 ACCAAAAACGCTCTTATATTATGGG 57.728 36.000 0.00 0.00 0.00 4.00
2494 3495 7.057894 ACCAAAAACGCTCTTATATTATGGGA 58.942 34.615 0.00 0.00 0.00 4.37
2495 3496 7.012989 ACCAAAAACGCTCTTATATTATGGGAC 59.987 37.037 0.00 0.00 0.00 4.46
2496 3497 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2497 3498 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2498 3499 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2499 3500 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2517 3518 6.137794 ACGGAGTGAGTATAAGATGTTCTG 57.862 41.667 0.00 0.00 42.51 3.02
2653 3655 5.983720 AGGTAGTACACGATATGAACATTGC 59.016 40.000 2.06 0.00 0.00 3.56
2703 3714 6.946340 TGTTCTTGCAATCTTCTGTCCTATA 58.054 36.000 0.00 0.00 0.00 1.31
2773 3784 3.365472 ACTGCCACAAAAAGTTCTTCCT 58.635 40.909 0.00 0.00 0.00 3.36
3147 4158 3.084536 TGGGCAGTCTCATATTTTGCA 57.915 42.857 0.00 0.00 36.53 4.08
3440 4451 7.147312 CACTTGTCCACATTGTTGTTATCATT 58.853 34.615 0.00 0.00 32.34 2.57
3663 4675 1.151668 CAGCACCCAGAGTTCTTTCG 58.848 55.000 0.00 0.00 0.00 3.46
3671 4683 4.466370 ACCCAGAGTTCTTTCGATGTATGA 59.534 41.667 0.00 0.00 0.00 2.15
3838 4851 4.014406 TGGTCGAGTTGTAAGCTCAGATA 58.986 43.478 0.00 0.00 33.45 1.98
3856 4869 7.443302 TCAGATAGTTCATTCTTTCCATCCT 57.557 36.000 0.00 0.00 0.00 3.24
4083 5106 5.174943 CCTTGAAAACAATCAGTTAAACGGC 59.825 40.000 0.00 0.00 40.26 5.68
4183 5206 4.562767 TGCACCCCTTACTATGGAGAATA 58.437 43.478 0.00 0.00 0.00 1.75
4225 5248 3.576550 AGACTGTCCTTCCTCTCTTTGTC 59.423 47.826 3.76 0.00 0.00 3.18
4314 5339 9.604626 CATTTGATCAAGAGTCTTTACAGAAAC 57.395 33.333 8.41 0.00 0.00 2.78
4345 5370 3.245229 TGCACTTACTGATTCCCAACCAT 60.245 43.478 0.00 0.00 0.00 3.55
4463 5488 7.453393 AGGCAGATGTAGCTAGCATATTTTAA 58.547 34.615 18.83 0.00 0.00 1.52
4539 5564 7.448469 AGCTTCACTTAACTTTGGTGACATATT 59.552 33.333 0.00 0.00 42.32 1.28
4554 5579 8.319737 TGGTGACATATTGTGGTAACATACGTC 61.320 40.741 0.00 0.00 43.75 4.34
4607 5634 7.786030 AGCGATAGTATTAGCCACAATGATAT 58.214 34.615 7.62 0.00 39.35 1.63
4639 5667 9.807921 TTTAGGATGTTCCTTCTGTTCTAATTT 57.192 29.630 0.59 0.00 46.91 1.82
4666 5694 2.666190 TGCAGCTCGTCAGGCAAC 60.666 61.111 0.00 0.00 32.54 4.17
4879 5907 6.314400 ACATGCAGTGATTTATTTTTGCCATC 59.686 34.615 0.00 0.00 0.00 3.51
5022 6050 2.123077 AGGAGGATCGGCTCTGGG 60.123 66.667 0.00 0.00 34.37 4.45
5223 6251 4.377431 CCGTTGAAGAGATAAACACAGCAC 60.377 45.833 0.00 0.00 0.00 4.40
5400 6506 7.275888 AGTCTTAGCTTAGATCAGTCAGATG 57.724 40.000 5.61 0.00 37.00 2.90
5432 6538 5.705441 TCTCTATGTTTCTGCAATTTCGGTT 59.295 36.000 0.00 0.00 0.00 4.44
5582 6689 3.827876 TGCTCATGCATTTCTTTCTTCCA 59.172 39.130 0.00 0.00 45.31 3.53
5584 6691 4.157289 GCTCATGCATTTCTTTCTTCCAGA 59.843 41.667 0.00 0.00 39.41 3.86
5585 6692 5.163540 GCTCATGCATTTCTTTCTTCCAGAT 60.164 40.000 0.00 0.00 39.41 2.90
5586 6693 6.203808 TCATGCATTTCTTTCTTCCAGATG 57.796 37.500 0.00 0.00 0.00 2.90
5787 6896 7.512992 TGATGTTAATTTTGTTTGGTGGGATT 58.487 30.769 0.00 0.00 0.00 3.01
5794 6903 2.950781 TGTTTGGTGGGATTAACAGCA 58.049 42.857 0.00 0.00 43.73 4.41
5795 6904 3.505386 TGTTTGGTGGGATTAACAGCAT 58.495 40.909 0.00 0.00 44.63 3.79
5796 6905 4.667573 TGTTTGGTGGGATTAACAGCATA 58.332 39.130 0.00 0.00 44.63 3.14
5797 6906 4.461081 TGTTTGGTGGGATTAACAGCATAC 59.539 41.667 9.95 9.95 44.63 2.39
5798 6907 4.584638 TTGGTGGGATTAACAGCATACT 57.415 40.909 0.00 0.00 44.63 2.12
5852 6961 0.031994 CGGCAAAACTTTGTCTGGGG 59.968 55.000 5.34 0.00 40.47 4.96
5899 7008 4.821805 ACATGTTTAGTTGGTTGACCTCAG 59.178 41.667 0.00 0.00 36.82 3.35
6009 7118 2.749776 CCCTTAAACCAAAAGTTGCCG 58.250 47.619 0.00 0.00 39.19 5.69
6081 7196 8.783833 TCTGAATTTTGAGGTCTATTCTTCAG 57.216 34.615 0.00 0.00 38.78 3.02
6432 7549 8.850156 AGTAGCAACATTTTACTTGACAAGAAT 58.150 29.630 21.95 8.32 0.00 2.40
6594 7711 5.304101 TCTTTGCCATGGTTTAGTGATTTGT 59.696 36.000 14.67 0.00 0.00 2.83
6628 7745 4.667573 TCCTGGTAGCATCTGAGGTATAG 58.332 47.826 0.00 0.00 0.00 1.31
6634 7751 6.382859 TGGTAGCATCTGAGGTATAGTTTTCA 59.617 38.462 0.00 0.00 0.00 2.69
6683 7803 1.577736 ACATCTCCCAGCAGCTAACT 58.422 50.000 0.00 0.00 0.00 2.24
6758 7878 1.003331 CACGAGCCGATCTCTAGTGAC 60.003 57.143 15.11 0.00 39.70 3.67
6805 7925 1.206132 TGTGGCGTGGGTAAGTATCTG 59.794 52.381 0.00 0.00 0.00 2.90
6929 8049 3.429085 GAACATTGACGCCATCATTGAC 58.571 45.455 12.19 5.02 39.91 3.18
7055 8175 2.626840 GTGCTCAAAGAGATCCAGGAC 58.373 52.381 0.00 0.00 0.00 3.85
7158 8278 1.134220 ACACCGACAACAGTGTGGATT 60.134 47.619 4.15 0.00 45.24 3.01
7169 8289 3.087031 CAGTGTGGATTTGGAGCAGAAT 58.913 45.455 0.00 0.00 0.00 2.40
7199 8319 2.025156 GAAATGCTCATGCGGCCG 59.975 61.111 24.05 24.05 43.34 6.13
7259 8383 1.903183 GTGTAAGCAAGGAGGAGAGGT 59.097 52.381 0.00 0.00 0.00 3.85
7280 8404 5.705905 AGGTTCATGTGTTAGTTAGGCTTTC 59.294 40.000 0.00 0.00 0.00 2.62
7281 8405 5.705905 GGTTCATGTGTTAGTTAGGCTTTCT 59.294 40.000 0.00 0.00 0.00 2.52
7282 8406 6.348540 GGTTCATGTGTTAGTTAGGCTTTCTG 60.349 42.308 0.00 0.00 0.00 3.02
7286 8410 6.371809 TGTGTTAGTTAGGCTTTCTGTTTG 57.628 37.500 0.00 0.00 0.00 2.93
7295 8419 3.897505 AGGCTTTCTGTTTGCTGGTAATT 59.102 39.130 0.00 0.00 0.00 1.40
7321 8445 4.910195 TGAAAGCTGTGGATGACATTAGT 58.090 39.130 0.00 0.00 32.74 2.24
7324 8448 6.939730 TGAAAGCTGTGGATGACATTAGTTTA 59.060 34.615 0.00 0.00 32.74 2.01
7325 8449 6.992063 AAGCTGTGGATGACATTAGTTTAG 57.008 37.500 0.00 0.00 32.74 1.85
7326 8450 4.878397 AGCTGTGGATGACATTAGTTTAGC 59.122 41.667 0.00 0.00 32.74 3.09
7327 8451 4.878397 GCTGTGGATGACATTAGTTTAGCT 59.122 41.667 0.00 0.00 32.74 3.32
7329 8453 6.676456 GCTGTGGATGACATTAGTTTAGCTTG 60.676 42.308 0.00 0.00 32.74 4.01
7331 8455 5.880332 GTGGATGACATTAGTTTAGCTTGGA 59.120 40.000 0.00 0.00 0.00 3.53
7340 8464 8.565416 ACATTAGTTTAGCTTGGAAGTACAAAC 58.435 33.333 0.00 0.00 0.00 2.93
7362 8486 4.524328 ACTGGGAATTTGATGGTGAAAGAC 59.476 41.667 0.00 0.00 0.00 3.01
7386 8510 5.441500 TGGTGATCTGGAACTGTTGTTTTA 58.558 37.500 0.00 0.00 36.39 1.52
7387 8511 6.068010 TGGTGATCTGGAACTGTTGTTTTAT 58.932 36.000 0.00 0.00 36.39 1.40
7393 8517 9.313118 GATCTGGAACTGTTGTTTTATTTGTTT 57.687 29.630 0.00 0.00 36.39 2.83
7404 8528 9.049974 GTTGTTTTATTTGTTTTTGTGCTTCAG 57.950 29.630 0.00 0.00 0.00 3.02
7412 8536 5.108517 TGTTTTTGTGCTTCAGATTGGTTC 58.891 37.500 0.00 0.00 0.00 3.62
7419 8543 3.960102 TGCTTCAGATTGGTTCCAAACTT 59.040 39.130 10.84 0.00 28.78 2.66
7423 8547 6.983890 GCTTCAGATTGGTTCCAAACTTTTAA 59.016 34.615 10.84 6.36 28.78 1.52
7431 8555 7.038154 TGGTTCCAAACTTTTAAGATGTCAG 57.962 36.000 0.00 0.00 0.00 3.51
7432 8556 6.040391 TGGTTCCAAACTTTTAAGATGTCAGG 59.960 38.462 0.00 0.00 0.00 3.86
7433 8557 6.040504 GGTTCCAAACTTTTAAGATGTCAGGT 59.959 38.462 0.00 0.00 0.00 4.00
7437 8573 3.421844 ACTTTTAAGATGTCAGGTGGGC 58.578 45.455 0.00 0.00 0.00 5.36
7465 8601 3.066760 GGAGATGGGGCAAATAGAAAACG 59.933 47.826 0.00 0.00 0.00 3.60
7466 8602 3.694566 GAGATGGGGCAAATAGAAAACGT 59.305 43.478 0.00 0.00 0.00 3.99
7472 8608 3.252458 GGGCAAATAGAAAACGTGACAGT 59.748 43.478 0.00 0.00 0.00 3.55
7476 8612 6.021596 GCAAATAGAAAACGTGACAGTATGG 58.978 40.000 0.00 0.00 43.62 2.74
7486 8622 1.145945 TGACAGTATGGGGGTTTGCAA 59.854 47.619 0.00 0.00 43.62 4.08
7512 8648 3.698029 ATCACACGCCAAATAAGATGC 57.302 42.857 0.00 0.00 0.00 3.91
7514 8650 2.419673 TCACACGCCAAATAAGATGCAG 59.580 45.455 0.00 0.00 0.00 4.41
7519 8655 1.537562 GCCAAATAAGATGCAGCTGCC 60.538 52.381 34.64 20.80 41.18 4.85
7534 8670 3.316029 CAGCTGCCGGATTCAATTTCATA 59.684 43.478 5.05 0.00 0.00 2.15
7540 8676 3.550030 CCGGATTCAATTTCATAACGGCC 60.550 47.826 0.00 0.00 31.93 6.13
7567 8703 8.103948 AGGAATGTTCATCTCAAAACTAACAG 57.896 34.615 0.00 0.00 31.09 3.16
7569 8705 8.567948 GGAATGTTCATCTCAAAACTAACAGAA 58.432 33.333 0.00 0.00 31.09 3.02
7573 8709 6.861065 TCATCTCAAAACTAACAGAACCAC 57.139 37.500 0.00 0.00 0.00 4.16
7577 8713 4.761975 TCAAAACTAACAGAACCACGTCT 58.238 39.130 0.00 0.00 0.00 4.18
7579 8715 4.395959 AAACTAACAGAACCACGTCTGA 57.604 40.909 8.80 0.00 46.76 3.27
7581 8717 4.175787 ACTAACAGAACCACGTCTGATC 57.824 45.455 8.80 0.00 46.76 2.92
7582 8718 3.572682 ACTAACAGAACCACGTCTGATCA 59.427 43.478 8.80 0.00 46.76 2.92
7583 8719 3.469008 AACAGAACCACGTCTGATCAA 57.531 42.857 8.80 0.00 46.76 2.57
7584 8720 3.685139 ACAGAACCACGTCTGATCAAT 57.315 42.857 8.80 0.00 46.76 2.57
7585 8721 3.589988 ACAGAACCACGTCTGATCAATC 58.410 45.455 8.80 0.00 46.76 2.67
7586 8722 2.600420 CAGAACCACGTCTGATCAATCG 59.400 50.000 14.75 14.75 46.76 3.34
7587 8723 2.231478 AGAACCACGTCTGATCAATCGT 59.769 45.455 15.81 15.81 36.99 3.73
7588 8724 2.743636 ACCACGTCTGATCAATCGTT 57.256 45.000 18.01 6.46 34.30 3.85
7589 8725 3.861276 ACCACGTCTGATCAATCGTTA 57.139 42.857 18.01 0.00 34.30 3.18
7590 8726 4.386867 ACCACGTCTGATCAATCGTTAT 57.613 40.909 18.01 9.47 34.30 1.89
7591 8727 4.360563 ACCACGTCTGATCAATCGTTATC 58.639 43.478 18.01 0.00 34.30 1.75
7592 8728 4.142249 ACCACGTCTGATCAATCGTTATCA 60.142 41.667 18.01 0.00 34.30 2.15
7628 8765 6.005583 TGATACAAAAGCTTGCTTGAGAAG 57.994 37.500 16.01 0.93 35.84 2.85
7630 8767 4.564940 ACAAAAGCTTGCTTGAGAAGAG 57.435 40.909 16.01 0.00 35.84 2.85
7638 8775 3.319137 TGCTTGAGAAGAGCACGTAAT 57.681 42.857 0.00 0.00 44.63 1.89
7654 8791 6.309737 AGCACGTAATAGCTAGTAACAAACAC 59.690 38.462 1.83 0.00 39.78 3.32
7674 8812 8.716909 CAAACACCAAATGTAGTCAAAAACTTT 58.283 29.630 0.00 0.00 42.31 2.66
7682 8820 9.788960 AAATGTAGTCAAAAACTTTCTTCAGTC 57.211 29.630 0.00 0.00 39.55 3.51
7686 8824 7.687941 AGTCAAAAACTTTCTTCAGTCTGAA 57.312 32.000 14.54 14.54 33.03 3.02
7707 8845 4.734398 AGCCAAACAATTGTCAGTTGAA 57.266 36.364 18.72 0.00 34.60 2.69
7736 8874 6.751157 AGATGATTGTCACATTTGCTTTCAA 58.249 32.000 0.00 0.00 0.00 2.69
7744 8882 6.128336 TGTCACATTTGCTTTCAAGTTTTTGG 60.128 34.615 0.00 0.00 34.97 3.28
7837 8978 4.950475 TCATGTACAAAGGAGTCTCTCGAT 59.050 41.667 0.00 0.00 0.00 3.59
7870 9011 6.205784 GCAAGAAAACATTTACACAGCTACA 58.794 36.000 0.00 0.00 0.00 2.74
7887 9028 4.572389 AGCTACAATGGCGAAATAGAACAG 59.428 41.667 0.00 0.00 34.52 3.16
7896 9039 4.270325 GGCGAAATAGAACAGACGCTAAAT 59.730 41.667 0.00 0.00 44.31 1.40
7947 9090 3.118223 TCGCACCCAAACCATATGTATCA 60.118 43.478 1.24 0.00 0.00 2.15
8014 9161 2.309755 AGGATCCTGATGACCAAGCAAA 59.690 45.455 15.29 0.00 0.00 3.68
8022 9169 3.318839 TGATGACCAAGCAAAGGAACAAG 59.681 43.478 0.00 0.00 0.00 3.16
8028 9176 1.372128 GCAAAGGAACAAGCAGCGG 60.372 57.895 0.00 0.00 0.00 5.52
8056 9204 3.142838 GCCGGCACATCCAGCAAT 61.143 61.111 24.80 0.00 38.17 3.56
8059 9207 1.430632 CGGCACATCCAGCAATGTC 59.569 57.895 0.00 0.00 37.78 3.06
8068 9216 1.133823 TCCAGCAATGTCCACAACACT 60.134 47.619 0.00 0.00 41.75 3.55
8080 9228 3.376859 TCCACAACACTACACAAAGCAAG 59.623 43.478 0.00 0.00 0.00 4.01
8105 9253 8.960591 AGATTATAATCACACAAGGACAAAAGG 58.039 33.333 24.00 0.00 37.89 3.11
8108 9256 1.566703 TCACACAAGGACAAAAGGGGA 59.433 47.619 0.00 0.00 0.00 4.81
8109 9257 1.681264 CACACAAGGACAAAAGGGGAC 59.319 52.381 0.00 0.00 0.00 4.46
8118 9266 0.380378 CAAAAGGGGACACACACACG 59.620 55.000 0.00 0.00 0.00 4.49
8119 9267 0.034863 AAAAGGGGACACACACACGT 60.035 50.000 0.00 0.00 0.00 4.49
8120 9268 0.831966 AAAGGGGACACACACACGTA 59.168 50.000 0.00 0.00 0.00 3.57
8132 9280 9.251792 GGACACACACACGTATATATCAAATTA 57.748 33.333 0.00 0.00 0.00 1.40
8199 9347 3.069586 AGTTCAAACTCAGGATCGTGTCA 59.930 43.478 14.67 0.00 32.86 3.58
8377 9525 7.981102 AAAGTCCAAAGGTTCTGTTATACTC 57.019 36.000 0.00 0.00 0.00 2.59
8380 9528 7.690256 AGTCCAAAGGTTCTGTTATACTCATT 58.310 34.615 0.00 0.00 0.00 2.57
8381 9529 8.164070 AGTCCAAAGGTTCTGTTATACTCATTT 58.836 33.333 0.00 0.00 0.00 2.32
8382 9530 8.237267 GTCCAAAGGTTCTGTTATACTCATTTG 58.763 37.037 0.00 0.00 0.00 2.32
8383 9531 8.160765 TCCAAAGGTTCTGTTATACTCATTTGA 58.839 33.333 0.00 0.00 0.00 2.69
8384 9532 8.792633 CCAAAGGTTCTGTTATACTCATTTGAA 58.207 33.333 0.00 0.00 0.00 2.69
8385 9533 9.612620 CAAAGGTTCTGTTATACTCATTTGAAC 57.387 33.333 0.00 0.00 33.87 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 242 0.689080 TGTGGGAAGGCTGGCAAAAA 60.689 50.000 3.38 0.00 0.00 1.94
243 264 4.740634 GCACGAAAGAGGATGATACATGGA 60.741 45.833 0.00 0.00 0.00 3.41
494 1432 6.970484 TGCCTTTTCTCTCAATACACTTTTC 58.030 36.000 0.00 0.00 0.00 2.29
540 1483 4.635699 TCTCGTATCTAGAGGCATACCA 57.364 45.455 0.00 0.00 39.06 3.25
555 1498 9.241317 CTCGGTTTTATAATTTAGCTTCTCGTA 57.759 33.333 0.00 0.00 0.00 3.43
557 1500 7.064064 GCTCGGTTTTATAATTTAGCTTCTCG 58.936 38.462 0.00 0.00 0.00 4.04
567 1510 6.607019 TGGGATTAGGCTCGGTTTTATAATT 58.393 36.000 0.00 0.00 0.00 1.40
568 1511 6.195600 TGGGATTAGGCTCGGTTTTATAAT 57.804 37.500 0.00 0.00 0.00 1.28
588 1545 5.505181 AGTGCATATATAAGAGGGTTGGG 57.495 43.478 0.00 0.00 0.00 4.12
589 1546 6.540189 GCATAGTGCATATATAAGAGGGTTGG 59.460 42.308 0.00 0.00 44.26 3.77
640 1597 1.625818 TCAGAAGCAACCTTCCTCTCC 59.374 52.381 0.17 0.00 46.97 3.71
657 1616 3.522553 GTTAACCACGAGAATCCCTCAG 58.477 50.000 0.00 0.00 42.06 3.35
777 1748 3.094572 TGTGGTAGTAGCTAGGGTGTTC 58.905 50.000 0.00 0.00 0.00 3.18
807 1778 2.081787 TGGCCCTTCTTGTGGTGGA 61.082 57.895 0.00 0.00 0.00 4.02
874 1845 0.243636 CAAAGCAAAAGGGTAGGCGG 59.756 55.000 0.00 0.00 0.00 6.13
917 1888 3.120086 AAAGGTGCGGCTGACAGGT 62.120 57.895 4.26 0.00 0.00 4.00
920 1891 1.301716 GAGAAAGGTGCGGCTGACA 60.302 57.895 0.00 0.00 0.00 3.58
1045 2016 5.689383 TCAAAAATCGACAAAAGGAGGAG 57.311 39.130 0.00 0.00 0.00 3.69
1097 2071 0.900182 CCCTTTTGCTGGGGAGGAAC 60.900 60.000 0.00 0.00 45.18 3.62
1111 2085 1.378514 CGTATGCTGGTGCCCCTTT 60.379 57.895 0.00 0.00 38.71 3.11
1112 2086 2.272146 CGTATGCTGGTGCCCCTT 59.728 61.111 0.00 0.00 38.71 3.95
1114 2088 2.624674 AATCCGTATGCTGGTGCCCC 62.625 60.000 0.00 0.00 38.71 5.80
1115 2089 0.107831 TAATCCGTATGCTGGTGCCC 59.892 55.000 0.00 0.00 38.71 5.36
1116 2090 1.226746 GTAATCCGTATGCTGGTGCC 58.773 55.000 0.00 0.00 38.71 5.01
1120 2100 1.282248 CGCCGTAATCCGTATGCTGG 61.282 60.000 0.00 0.00 33.66 4.85
1125 2105 0.872881 GCACACGCCGTAATCCGTAT 60.873 55.000 0.00 0.00 35.69 3.06
1134 2114 3.649277 GAGGATGAGCACACGCCGT 62.649 63.158 0.00 0.00 39.83 5.68
1150 2130 4.376819 CGCAACACAAAGCTAGAAGAAGAG 60.377 45.833 0.00 0.00 0.00 2.85
1156 2136 1.264020 CAGCGCAACACAAAGCTAGAA 59.736 47.619 11.47 0.00 37.94 2.10
1159 2139 1.002900 GAACAGCGCAACACAAAGCTA 60.003 47.619 11.47 0.00 37.94 3.32
1167 2147 1.444119 GAAGTGGGAACAGCGCAACA 61.444 55.000 11.47 0.00 44.46 3.33
1169 2149 1.896660 GGAAGTGGGAACAGCGCAA 60.897 57.895 11.47 0.00 44.46 4.85
1190 2170 1.268283 CCTCCTCTGGTTCCTGGGTC 61.268 65.000 0.00 0.00 0.00 4.46
1195 2175 1.306568 GGCTCCTCCTCTGGTTCCT 60.307 63.158 0.00 0.00 0.00 3.36
1197 2177 2.896443 CGGCTCCTCCTCTGGTTC 59.104 66.667 0.00 0.00 0.00 3.62
1201 2181 4.154347 GTGGCGGCTCCTCCTCTG 62.154 72.222 11.43 0.00 35.26 3.35
1202 2182 4.704103 TGTGGCGGCTCCTCCTCT 62.704 66.667 11.43 0.00 35.26 3.69
1217 2199 1.075659 GGGGAAAGGCTCTGCTTGT 59.924 57.895 0.00 0.00 0.00 3.16
1287 2269 1.379977 ACAGCGGCAGCCTCTAGTA 60.380 57.895 10.54 0.00 46.67 1.82
1290 2272 4.457496 GCACAGCGGCAGCCTCTA 62.457 66.667 10.54 0.00 46.67 2.43
1302 2284 1.042559 GGAGGAGAGGAGGAGCACAG 61.043 65.000 0.00 0.00 0.00 3.66
1331 2316 0.760945 GGACGGATCCTCATCCCAGT 60.761 60.000 10.75 0.00 45.67 4.00
1406 2393 3.738246 CTGCTGCTGCTGCTGGTG 61.738 66.667 27.67 13.98 40.48 4.17
1427 2417 0.251634 GAGAAGCAGCTAGGCAACCT 59.748 55.000 0.00 0.00 37.71 3.50
1448 2438 1.600636 CCACGGAGGCAAGCAAAGA 60.601 57.895 0.00 0.00 0.00 2.52
1576 2566 2.160205 TCTCGCGAGAAGAGAAGGAAA 58.840 47.619 35.16 9.06 41.29 3.13
1672 2669 1.656652 GCTGCGCAAATCTCCTTAGA 58.343 50.000 13.05 0.00 35.80 2.10
1681 2678 1.939934 ACATGTATACGCTGCGCAAAT 59.060 42.857 23.51 15.32 0.00 2.32
1685 2682 0.927537 TGAACATGTATACGCTGCGC 59.072 50.000 23.51 0.00 0.00 6.09
1742 2739 6.710744 AGTAGTATAGCATAAATGTGTTGCCC 59.289 38.462 0.00 0.00 37.07 5.36
1743 2740 7.730364 AGTAGTATAGCATAAATGTGTTGCC 57.270 36.000 0.00 0.00 37.07 4.52
1762 2762 8.915036 AGTAGCATACATAACTTAGCAAGTAGT 58.085 33.333 2.60 5.12 46.26 2.73
1789 2789 9.205513 TCGTCCCCTAAACTTAGAAAGTATAAT 57.794 33.333 0.00 0.00 41.91 1.28
1806 2806 2.218066 GGGATTTGCTCGTCCCCTA 58.782 57.895 9.03 0.00 46.95 3.53
1814 2814 8.491331 TTGCTATTTTTATTTGGGATTTGCTC 57.509 30.769 0.00 0.00 0.00 4.26
1843 2843 1.454572 ATGAAACCTGCACGCAAGCA 61.455 50.000 0.00 0.00 43.35 3.91
1849 2850 0.877071 AAGCTGATGAAACCTGCACG 59.123 50.000 0.00 0.00 0.00 5.34
1986 2987 9.178758 GGAAAATACCTCAGAGTTGAATATTGT 57.821 33.333 0.00 0.00 30.66 2.71
2094 3095 1.062002 ACGTTGCTGTTGTCGAAGTTG 59.938 47.619 0.00 0.00 0.00 3.16
2115 3116 3.459969 GGGAGAGATCAAACTTGGGGTAT 59.540 47.826 0.00 0.00 0.00 2.73
2423 3424 6.628398 GCTCTTATATTATGGGACGGAGGAAG 60.628 46.154 0.00 0.00 0.00 3.46
2424 3425 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
2425 3426 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
2426 3427 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2427 3428 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2428 3429 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2429 3430 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2430 3431 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2431 3432 7.360361 CCAAAAACGCTCTTATATTATGGGAC 58.640 38.462 0.00 0.00 0.00 4.46
2432 3433 6.016610 GCCAAAAACGCTCTTATATTATGGGA 60.017 38.462 0.00 0.00 0.00 4.37
2433 3434 6.149633 GCCAAAAACGCTCTTATATTATGGG 58.850 40.000 0.00 0.00 0.00 4.00
2434 3435 6.636850 GTGCCAAAAACGCTCTTATATTATGG 59.363 38.462 0.00 0.00 0.00 2.74
2435 3436 7.417612 AGTGCCAAAAACGCTCTTATATTATG 58.582 34.615 0.00 0.00 0.00 1.90
2436 3437 7.568199 AGTGCCAAAAACGCTCTTATATTAT 57.432 32.000 0.00 0.00 0.00 1.28
2437 3438 6.995511 AGTGCCAAAAACGCTCTTATATTA 57.004 33.333 0.00 0.00 0.00 0.98
2438 3439 5.897377 AGTGCCAAAAACGCTCTTATATT 57.103 34.783 0.00 0.00 0.00 1.28
2439 3440 5.878116 TGTAGTGCCAAAAACGCTCTTATAT 59.122 36.000 0.00 0.00 32.65 0.86
2440 3441 5.121142 GTGTAGTGCCAAAAACGCTCTTATA 59.879 40.000 0.00 0.00 32.65 0.98
2441 3442 4.069304 TGTAGTGCCAAAAACGCTCTTAT 58.931 39.130 0.00 0.00 32.65 1.73
2442 3443 3.249080 GTGTAGTGCCAAAAACGCTCTTA 59.751 43.478 0.00 0.00 32.65 2.10
2443 3444 2.032924 GTGTAGTGCCAAAAACGCTCTT 59.967 45.455 0.00 0.00 32.65 2.85
2444 3445 1.602377 GTGTAGTGCCAAAAACGCTCT 59.398 47.619 0.00 0.00 34.63 4.09
2445 3446 1.602377 AGTGTAGTGCCAAAAACGCTC 59.398 47.619 0.00 0.00 0.00 5.03
2446 3447 1.675552 AGTGTAGTGCCAAAAACGCT 58.324 45.000 0.00 0.00 0.00 5.07
2447 3448 2.546789 ACTAGTGTAGTGCCAAAAACGC 59.453 45.455 0.00 0.00 37.69 4.84
2448 3449 5.260027 GTACTAGTGTAGTGCCAAAAACG 57.740 43.478 5.39 0.00 39.81 3.60
2456 3457 4.376717 GCGTTTTTGGTACTAGTGTAGTGC 60.377 45.833 5.39 0.00 39.81 4.40
2457 3458 4.986659 AGCGTTTTTGGTACTAGTGTAGTG 59.013 41.667 5.39 0.00 39.81 2.74
2458 3459 5.010415 AGAGCGTTTTTGGTACTAGTGTAGT 59.990 40.000 5.39 0.00 42.68 2.73
2459 3460 5.467705 AGAGCGTTTTTGGTACTAGTGTAG 58.532 41.667 5.39 0.00 0.00 2.74
2460 3461 5.458041 AGAGCGTTTTTGGTACTAGTGTA 57.542 39.130 5.39 0.00 0.00 2.90
2461 3462 4.332428 AGAGCGTTTTTGGTACTAGTGT 57.668 40.909 5.39 0.00 0.00 3.55
2462 3463 6.963049 ATAAGAGCGTTTTTGGTACTAGTG 57.037 37.500 5.39 0.00 0.00 2.74
2466 3467 9.052759 CCATAATATAAGAGCGTTTTTGGTACT 57.947 33.333 0.00 0.00 0.00 2.73
2467 3468 8.287503 CCCATAATATAAGAGCGTTTTTGGTAC 58.712 37.037 0.00 0.00 0.00 3.34
2468 3469 8.212312 TCCCATAATATAAGAGCGTTTTTGGTA 58.788 33.333 0.00 0.00 0.00 3.25
2469 3470 7.012989 GTCCCATAATATAAGAGCGTTTTTGGT 59.987 37.037 0.00 0.00 0.00 3.67
2470 3471 7.360361 GTCCCATAATATAAGAGCGTTTTTGG 58.640 38.462 0.00 0.00 0.00 3.28
2471 3472 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2472 3473 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2473 3474 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2474 3475 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2475 3476 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2476 3477 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2477 3478 4.158025 ACTCCGTCCCATAATATAAGAGCG 59.842 45.833 0.00 0.00 0.00 5.03
2478 3479 5.185249 TCACTCCGTCCCATAATATAAGAGC 59.815 44.000 0.00 0.00 0.00 4.09
2479 3480 6.434652 ACTCACTCCGTCCCATAATATAAGAG 59.565 42.308 0.00 0.00 0.00 2.85
2480 3481 6.312529 ACTCACTCCGTCCCATAATATAAGA 58.687 40.000 0.00 0.00 0.00 2.10
2481 3482 6.591750 ACTCACTCCGTCCCATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
2482 3483 9.758021 TTATACTCACTCCGTCCCATAATATAA 57.242 33.333 0.00 0.00 0.00 0.98
2483 3484 9.404848 CTTATACTCACTCCGTCCCATAATATA 57.595 37.037 0.00 0.00 0.00 0.86
2484 3485 8.114102 TCTTATACTCACTCCGTCCCATAATAT 58.886 37.037 0.00 0.00 0.00 1.28
2485 3486 7.464273 TCTTATACTCACTCCGTCCCATAATA 58.536 38.462 0.00 0.00 0.00 0.98
2486 3487 6.312529 TCTTATACTCACTCCGTCCCATAAT 58.687 40.000 0.00 0.00 0.00 1.28
2487 3488 5.698104 TCTTATACTCACTCCGTCCCATAA 58.302 41.667 0.00 0.00 0.00 1.90
2488 3489 5.314718 TCTTATACTCACTCCGTCCCATA 57.685 43.478 0.00 0.00 0.00 2.74
2489 3490 4.180377 TCTTATACTCACTCCGTCCCAT 57.820 45.455 0.00 0.00 0.00 4.00
2490 3491 3.657398 TCTTATACTCACTCCGTCCCA 57.343 47.619 0.00 0.00 0.00 4.37
2491 3492 3.890147 ACATCTTATACTCACTCCGTCCC 59.110 47.826 0.00 0.00 0.00 4.46
2492 3493 5.299782 AGAACATCTTATACTCACTCCGTCC 59.700 44.000 0.00 0.00 0.00 4.79
2493 3494 6.038382 TCAGAACATCTTATACTCACTCCGTC 59.962 42.308 0.00 0.00 0.00 4.79
2494 3495 5.886474 TCAGAACATCTTATACTCACTCCGT 59.114 40.000 0.00 0.00 0.00 4.69
2495 3496 6.038825 AGTCAGAACATCTTATACTCACTCCG 59.961 42.308 0.00 0.00 0.00 4.63
2496 3497 7.341445 AGTCAGAACATCTTATACTCACTCC 57.659 40.000 0.00 0.00 0.00 3.85
2497 3498 9.646427 AAAAGTCAGAACATCTTATACTCACTC 57.354 33.333 0.00 0.00 0.00 3.51
2606 3608 7.661847 ACCTCCATTCCGAATTATAAGATGTTC 59.338 37.037 0.00 0.00 0.00 3.18
2626 3628 5.195185 TGTTCATATCGTGTACTACCTCCA 58.805 41.667 0.00 0.00 0.00 3.86
2653 3655 7.268199 ACACATGTTCATATGAAGCTATTGG 57.732 36.000 18.47 7.88 34.27 3.16
2703 3714 8.104566 TGGTACAATATAACTGCAAACCTAAGT 58.895 33.333 0.00 0.00 31.92 2.24
2785 3796 6.649141 AGCACGATCAGAACTTTGTTATGTAA 59.351 34.615 5.23 0.00 0.00 2.41
3147 4158 3.516700 CTGGGGCCAAATCTTCAATTTCT 59.483 43.478 4.39 0.00 0.00 2.52
3446 4457 5.078411 ACTACACAGTTAGCTTGATCTGG 57.922 43.478 0.00 0.00 32.92 3.86
3514 4526 6.468956 GTGTTTGCTGTCAATATAATGGAACG 59.531 38.462 0.00 0.00 31.33 3.95
3522 4534 6.179756 AGACATGGTGTTTGCTGTCAATATA 58.820 36.000 0.00 0.00 40.32 0.86
3594 4606 2.205074 GACACTGGTAAGCATGGATCG 58.795 52.381 0.00 0.00 0.00 3.69
3685 4697 4.796038 ATCCAAAGTGAAGGCAGAATTG 57.204 40.909 0.00 0.00 0.00 2.32
3686 4698 5.813513 AAATCCAAAGTGAAGGCAGAATT 57.186 34.783 0.00 0.00 0.00 2.17
3688 4700 6.493115 TCAATAAATCCAAAGTGAAGGCAGAA 59.507 34.615 0.00 0.00 0.00 3.02
3690 4702 6.271488 TCAATAAATCCAAAGTGAAGGCAG 57.729 37.500 0.00 0.00 0.00 4.85
3727 4740 7.466804 TGTGAGGGACAATTCTTAGGTTTTAT 58.533 34.615 0.00 0.00 0.00 1.40
4083 5106 1.135315 CAAAGAGGATGGCAACGCG 59.865 57.895 3.53 3.53 42.51 6.01
4183 5206 4.021016 GTCTGGACCACTGTATCAACTTCT 60.021 45.833 0.00 0.00 0.00 2.85
4225 5248 2.756840 TGAGCACAGAACATCAGGAG 57.243 50.000 0.00 0.00 0.00 3.69
4314 5339 5.121454 GGAATCAGTAAGTGCAGAAGTTCTG 59.879 44.000 25.68 25.68 46.90 3.02
4333 5358 1.901833 ACCTGCAAATGGTTGGGAATC 59.098 47.619 0.00 0.00 33.34 2.52
4345 5370 7.013274 GCCTATTGTTCTGAATATACCTGCAAA 59.987 37.037 0.00 0.00 0.00 3.68
4476 5501 7.332926 CAGTAGTGTTCTCAAGCACAATATTCT 59.667 37.037 0.00 0.00 38.02 2.40
4539 5564 2.159476 GCTCTCGACGTATGTTACCACA 60.159 50.000 0.00 0.00 37.31 4.17
4554 5579 1.734465 GAAGGACCATTGTTGCTCTCG 59.266 52.381 0.00 0.00 0.00 4.04
4639 5667 1.216444 CGAGCTGCAGCAGGTAAGA 59.784 57.895 38.24 0.00 42.53 2.10
4666 5694 1.180029 CACTTGGCCCCTGAAGATTG 58.820 55.000 7.51 0.00 0.00 2.67
4879 5907 5.879237 TGCAAGAACAACAGTTTCTACAAG 58.121 37.500 0.00 0.00 0.00 3.16
5022 6050 4.562143 CCGTAGTATACTATGCCAAACCCC 60.562 50.000 21.98 3.85 40.12 4.95
5223 6251 9.103048 CATACTAAAAGCAGAAACAAGTAAACG 57.897 33.333 0.00 0.00 0.00 3.60
5400 6506 7.849804 TTGCAGAAACATAGAGAAGGATTAC 57.150 36.000 0.00 0.00 0.00 1.89
5577 6684 3.197333 ACTCATCAGGACACATCTGGAAG 59.803 47.826 0.00 0.00 33.36 3.46
5578 6685 3.176411 ACTCATCAGGACACATCTGGAA 58.824 45.455 0.00 0.00 33.36 3.53
5580 6687 3.623906 AACTCATCAGGACACATCTGG 57.376 47.619 0.00 0.00 33.36 3.86
5582 6689 4.029520 AGCTAACTCATCAGGACACATCT 58.970 43.478 0.00 0.00 0.00 2.90
5584 6691 3.118482 CCAGCTAACTCATCAGGACACAT 60.118 47.826 0.00 0.00 0.00 3.21
5585 6692 2.234661 CCAGCTAACTCATCAGGACACA 59.765 50.000 0.00 0.00 0.00 3.72
5586 6693 2.898705 CCAGCTAACTCATCAGGACAC 58.101 52.381 0.00 0.00 0.00 3.67
5794 6903 6.768483 TGTGCATATGCCAACAGTATAGTAT 58.232 36.000 24.54 0.00 41.18 2.12
5795 6904 6.168270 TGTGCATATGCCAACAGTATAGTA 57.832 37.500 24.54 0.00 41.18 1.82
5796 6905 5.034852 TGTGCATATGCCAACAGTATAGT 57.965 39.130 24.54 0.00 41.18 2.12
5797 6906 7.671495 TTATGTGCATATGCCAACAGTATAG 57.329 36.000 24.54 0.00 41.18 1.31
5798 6907 7.665145 ACATTATGTGCATATGCCAACAGTATA 59.335 33.333 24.54 9.87 41.18 1.47
5852 6961 9.431887 TGTTGTACAAGATCCTAAATACAGTTC 57.568 33.333 8.98 0.00 0.00 3.01
5899 7008 4.826556 AGAAGCTGATCCAAGTACAAGTC 58.173 43.478 0.00 0.00 0.00 3.01
6009 7118 8.336801 ACTACTGGAATTTCTTAATGGTTCAC 57.663 34.615 0.00 0.00 0.00 3.18
6081 7196 2.182030 CGGTCCTCGGCTCAAGTC 59.818 66.667 0.00 0.00 34.75 3.01
6594 7711 4.402056 GCTACCAGGATAGCAAACACTA 57.598 45.455 13.36 0.00 45.83 2.74
6628 7745 7.042791 TCGCCATCAAAAGAAGAAAATGAAAAC 60.043 33.333 0.00 0.00 0.00 2.43
6634 7751 5.712152 ACTCGCCATCAAAAGAAGAAAAT 57.288 34.783 0.00 0.00 0.00 1.82
6683 7803 7.819415 CCAAAACTGTATATGTCACTCTTCTCA 59.181 37.037 0.00 0.00 0.00 3.27
6758 7878 3.575399 GCAGTTGAGCCCAAAGTTG 57.425 52.632 0.00 0.00 33.49 3.16
6805 7925 1.328986 GCAGAAAGCTAACAGATCGCC 59.671 52.381 0.00 0.00 41.15 5.54
6929 8049 1.956170 GCCGGTATCCAGTGATGCG 60.956 63.158 1.90 0.00 34.71 4.73
7022 8142 1.323271 TGAGCACCTCGGAGATGGTC 61.323 60.000 21.90 21.90 36.79 4.02
7055 8175 4.592192 ACCTCGATGGCGATGGCG 62.592 66.667 0.00 0.00 46.80 5.69
7085 8205 4.357279 AGCTGCTGGACTTGGGGC 62.357 66.667 0.00 0.00 0.00 5.80
7158 8278 0.602638 AACGACGCATTCTGCTCCAA 60.603 50.000 0.00 0.00 42.25 3.53
7169 8289 1.535028 AGCATTTCATCAAACGACGCA 59.465 42.857 0.00 0.00 0.00 5.24
7199 8319 2.614259 TCCTGATTCTATCTGAGGCCC 58.386 52.381 0.00 0.00 0.00 5.80
7208 8328 6.051717 CGACTTTGGTGAATCCTGATTCTAT 58.948 40.000 18.00 0.23 45.55 1.98
7224 8344 3.541711 CTTACACGAAAAGCGACTTTGG 58.458 45.455 5.75 4.60 44.57 3.28
7259 8383 6.296026 ACAGAAAGCCTAACTAACACATGAA 58.704 36.000 0.00 0.00 0.00 2.57
7280 8404 7.599998 AGCTTTCAAATAATTACCAGCAAACAG 59.400 33.333 0.00 0.00 0.00 3.16
7281 8405 7.384660 CAGCTTTCAAATAATTACCAGCAAACA 59.615 33.333 0.00 0.00 0.00 2.83
7282 8406 7.384932 ACAGCTTTCAAATAATTACCAGCAAAC 59.615 33.333 0.00 0.00 0.00 2.93
7286 8410 5.807011 CCACAGCTTTCAAATAATTACCAGC 59.193 40.000 0.00 0.00 0.00 4.85
7295 8419 6.839124 AATGTCATCCACAGCTTTCAAATA 57.161 33.333 0.00 0.00 38.85 1.40
7321 8445 4.825085 CCCAGTTTGTACTTCCAAGCTAAA 59.175 41.667 0.00 0.00 34.62 1.85
7324 8448 2.441750 TCCCAGTTTGTACTTCCAAGCT 59.558 45.455 0.00 0.00 36.47 3.74
7325 8449 2.858745 TCCCAGTTTGTACTTCCAAGC 58.141 47.619 0.00 0.00 30.26 4.01
7326 8450 6.040391 TCAAATTCCCAGTTTGTACTTCCAAG 59.960 38.462 0.00 0.00 37.70 3.61
7327 8451 5.894393 TCAAATTCCCAGTTTGTACTTCCAA 59.106 36.000 0.00 0.00 37.70 3.53
7329 8453 6.389906 CATCAAATTCCCAGTTTGTACTTCC 58.610 40.000 0.00 0.00 37.70 3.46
7331 8455 5.838521 ACCATCAAATTCCCAGTTTGTACTT 59.161 36.000 0.00 0.00 37.70 2.24
7340 8464 4.768968 AGTCTTTCACCATCAAATTCCCAG 59.231 41.667 0.00 0.00 0.00 4.45
7362 8486 3.131709 ACAACAGTTCCAGATCACCAG 57.868 47.619 0.00 0.00 0.00 4.00
7386 8510 6.114767 ACCAATCTGAAGCACAAAAACAAAT 58.885 32.000 0.00 0.00 0.00 2.32
7387 8511 5.486526 ACCAATCTGAAGCACAAAAACAAA 58.513 33.333 0.00 0.00 0.00 2.83
7393 8517 3.295093 TGGAACCAATCTGAAGCACAAA 58.705 40.909 0.00 0.00 0.00 2.83
7404 8528 8.141268 TGACATCTTAAAAGTTTGGAACCAATC 58.859 33.333 7.12 6.80 35.70 2.67
7412 8536 5.278957 CCCACCTGACATCTTAAAAGTTTGG 60.279 44.000 0.00 0.00 0.00 3.28
7419 8543 1.948611 GCGCCCACCTGACATCTTAAA 60.949 52.381 0.00 0.00 0.00 1.52
7423 8547 4.101448 GGCGCCCACCTGACATCT 62.101 66.667 18.11 0.00 0.00 2.90
7431 8555 4.115199 ATCTCCTTGGCGCCCACC 62.115 66.667 26.77 0.00 30.78 4.61
7432 8556 2.825836 CATCTCCTTGGCGCCCAC 60.826 66.667 26.77 0.00 30.78 4.61
7433 8557 4.113815 CCATCTCCTTGGCGCCCA 62.114 66.667 26.77 13.22 0.00 5.36
7465 8601 1.173913 GCAAACCCCCATACTGTCAC 58.826 55.000 0.00 0.00 0.00 3.67
7466 8602 0.774276 TGCAAACCCCCATACTGTCA 59.226 50.000 0.00 0.00 0.00 3.58
7472 8608 4.533707 TGATTTTGATTGCAAACCCCCATA 59.466 37.500 1.71 0.00 43.27 2.74
7476 8612 3.498018 GTGTGATTTTGATTGCAAACCCC 59.502 43.478 1.71 0.00 43.27 4.95
7486 8622 6.266168 TCTTATTTGGCGTGTGATTTTGAT 57.734 33.333 0.00 0.00 0.00 2.57
7512 8648 1.473677 TGAAATTGAATCCGGCAGCTG 59.526 47.619 10.11 10.11 0.00 4.24
7514 8650 2.877043 ATGAAATTGAATCCGGCAGC 57.123 45.000 0.00 0.00 0.00 5.25
7519 8655 3.628017 GGCCGTTATGAAATTGAATCCG 58.372 45.455 0.00 0.00 0.00 4.18
7534 8670 0.035439 ATGAACATTCCTCGGCCGTT 60.035 50.000 27.15 10.21 0.00 4.44
7540 8676 5.869753 AGTTTTGAGATGAACATTCCTCG 57.130 39.130 0.00 0.00 0.00 4.63
7567 8703 2.607187 ACGATTGATCAGACGTGGTTC 58.393 47.619 21.89 0.00 37.58 3.62
7569 8705 2.743636 AACGATTGATCAGACGTGGT 57.256 45.000 22.77 10.85 38.92 4.16
7573 8709 7.859613 AGTAATGATAACGATTGATCAGACG 57.140 36.000 17.59 17.59 35.60 4.18
7609 8745 3.243334 GCTCTTCTCAAGCAAGCTTTTGT 60.243 43.478 4.24 0.00 39.61 2.83
7628 8765 6.529125 TGTTTGTTACTAGCTATTACGTGCTC 59.471 38.462 0.00 0.00 40.35 4.26
7630 8767 6.454715 GGTGTTTGTTACTAGCTATTACGTGC 60.455 42.308 0.00 0.00 0.00 5.34
7634 8771 9.769093 CATTTGGTGTTTGTTACTAGCTATTAC 57.231 33.333 0.00 0.00 0.00 1.89
7636 8773 8.404107 ACATTTGGTGTTTGTTACTAGCTATT 57.596 30.769 0.00 0.00 38.01 1.73
7638 8775 8.152246 ACTACATTTGGTGTTTGTTACTAGCTA 58.848 33.333 0.00 0.00 42.29 3.32
7654 8791 8.925161 TGAAGAAAGTTTTTGACTACATTTGG 57.075 30.769 0.00 0.00 37.72 3.28
7674 8812 7.581571 ACAATTGTTTGGCTTCAGACTGAAGA 61.582 38.462 37.89 21.77 44.92 2.87
7682 8820 4.311816 ACTGACAATTGTTTGGCTTCAG 57.688 40.909 13.36 14.83 41.80 3.02
7686 8824 4.160252 AGTTCAACTGACAATTGTTTGGCT 59.840 37.500 13.36 11.62 41.80 4.75
7707 8845 8.743085 AAGCAAATGTGACAATCATCTATAGT 57.257 30.769 0.00 0.00 0.00 2.12
7744 8882 1.187087 TGGTGTGGGGTTTGTTGAAC 58.813 50.000 0.00 0.00 37.53 3.18
7837 8978 2.166907 TGTTTTCTTGCCTTGGGGAA 57.833 45.000 0.00 0.00 33.58 3.97
7870 9011 2.351726 GCGTCTGTTCTATTTCGCCATT 59.648 45.455 0.00 0.00 38.16 3.16
7887 9028 3.512033 AGAGAGACACCATTTAGCGTC 57.488 47.619 0.00 0.00 0.00 5.19
7896 9039 1.620819 GGCTTGAGAAGAGAGACACCA 59.379 52.381 0.00 0.00 0.00 4.17
7947 9090 6.388619 AACAGGTGGTCCTTGAAGTATATT 57.611 37.500 0.00 0.00 43.07 1.28
7969 9112 5.592104 TCTAGGCGAAGTCATACATGAAA 57.408 39.130 0.00 0.00 38.75 2.69
7997 9140 1.704628 TCCTTTGCTTGGTCATCAGGA 59.295 47.619 0.00 0.00 0.00 3.86
8014 9161 0.250901 AATGACCGCTGCTTGTTCCT 60.251 50.000 0.00 0.00 0.00 3.36
8022 9169 0.248621 GGCACATTAATGACCGCTGC 60.249 55.000 22.16 18.56 0.00 5.25
8028 9176 3.622459 GTGCCGGCACATTAATGAC 57.378 52.632 46.18 22.21 45.53 3.06
8056 9204 2.680841 GCTTTGTGTAGTGTTGTGGACA 59.319 45.455 0.00 0.00 35.42 4.02
8059 9207 3.376859 TCTTGCTTTGTGTAGTGTTGTGG 59.623 43.478 0.00 0.00 0.00 4.17
8068 9216 9.225436 TGTGTGATTATAATCTTGCTTTGTGTA 57.775 29.630 22.77 0.00 36.39 2.90
8080 9228 8.190784 CCCTTTTGTCCTTGTGTGATTATAATC 58.809 37.037 17.09 17.09 35.97 1.75
8089 9237 1.681264 GTCCCCTTTTGTCCTTGTGTG 59.319 52.381 0.00 0.00 0.00 3.82
8104 9252 2.973694 ATATACGTGTGTGTGTCCCC 57.026 50.000 0.00 0.00 0.00 4.81
8105 9253 5.190992 TGATATATACGTGTGTGTGTCCC 57.809 43.478 0.00 0.00 0.00 4.46
8108 9256 9.811995 ACTAATTTGATATATACGTGTGTGTGT 57.188 29.630 0.00 0.00 0.00 3.72
8132 9280 7.722949 ATGTGTTTCCATCATTTTATCCACT 57.277 32.000 0.00 0.00 0.00 4.00
8222 9370 4.617959 CTGGTACGTGAAAGTTCTTCTGA 58.382 43.478 0.00 0.00 0.00 3.27
8226 9374 3.181469 TGAGCTGGTACGTGAAAGTTCTT 60.181 43.478 0.00 0.00 0.00 2.52



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.