Multiple sequence alignment - TraesCS5D01G161400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G161400 chr5D 100.000 3511 0 0 1 3511 251957320 251953810 0.000000e+00 6484.0
1 TraesCS5D01G161400 chr5D 82.418 182 29 3 308 487 453782921 453782741 4.690000e-34 156.0
2 TraesCS5D01G161400 chr5A 92.896 1661 86 17 1 1636 334747327 334745674 0.000000e+00 2385.0
3 TraesCS5D01G161400 chr5A 90.716 1745 100 26 1634 3356 334745591 334743887 0.000000e+00 2268.0
4 TraesCS5D01G161400 chr5A 91.636 538 34 5 2789 3317 651511766 651512301 0.000000e+00 734.0
5 TraesCS5D01G161400 chr5A 83.012 259 34 7 229 482 450883616 450883869 3.530000e-55 226.0
6 TraesCS5D01G161400 chr5B 94.872 1326 61 6 1634 2955 284001102 283999780 0.000000e+00 2065.0
7 TraesCS5D01G161400 chr5B 86.292 1583 143 39 1 1535 284002894 284001338 0.000000e+00 1653.0
8 TraesCS5D01G161400 chr5B 93.496 246 6 5 1811 2056 407960793 407960558 1.200000e-94 357.0
9 TraesCS5D01G161400 chr5B 94.054 185 8 1 3196 3380 283999586 283999405 9.600000e-71 278.0
10 TraesCS5D01G161400 chr5B 96.711 152 3 1 1487 1636 284001340 284001189 5.820000e-63 252.0
11 TraesCS5D01G161400 chr5B 82.692 208 33 3 229 433 411094252 411094459 7.740000e-42 182.0
12 TraesCS5D01G161400 chr2A 89.249 586 52 9 1935 2514 240759815 240760395 0.000000e+00 723.0
13 TraesCS5D01G161400 chr2A 83.488 648 66 27 931 1550 240758741 240759375 1.830000e-157 566.0
14 TraesCS5D01G161400 chr2D 89.231 585 51 9 1935 2514 222647541 222648118 0.000000e+00 721.0
15 TraesCS5D01G161400 chr2D 84.031 645 65 23 931 1550 222646567 222647198 1.400000e-163 586.0
16 TraesCS5D01G161400 chr2D 79.487 195 38 1 229 421 7659590 7659396 1.700000e-28 137.0
17 TraesCS5D01G161400 chr2B 89.492 571 53 7 1946 2514 346670288 346669723 0.000000e+00 715.0
18 TraesCS5D01G161400 chr2B 83.861 632 65 21 934 1550 346671228 346670619 5.090000e-158 568.0
19 TraesCS5D01G161400 chr1B 79.609 819 112 37 1 784 657317471 657318269 1.430000e-148 536.0
20 TraesCS5D01G161400 chr1B 87.634 372 21 5 810 1175 657319219 657319571 3.260000e-110 409.0
21 TraesCS5D01G161400 chr1B 85.539 408 35 9 1253 1636 657319577 657319984 4.220000e-109 405.0
22 TraesCS5D01G161400 chr1B 84.000 125 16 3 313 433 45818570 45818446 2.210000e-22 117.0
23 TraesCS5D01G161400 chr1A 85.146 478 54 13 1 463 566595471 566595946 1.140000e-129 473.0
24 TraesCS5D01G161400 chr1A 86.275 408 32 9 1253 1636 566598475 566598882 4.190000e-114 422.0
25 TraesCS5D01G161400 chr1A 86.216 399 27 6 782 1175 566598094 566598469 1.170000e-109 407.0
26 TraesCS5D01G161400 chr1A 91.667 60 5 0 731 790 566597147 566597206 2.250000e-12 84.2
27 TraesCS5D01G161400 chr4B 89.103 312 24 2 1335 1636 218969733 218970044 2.560000e-101 379.0
28 TraesCS5D01G161400 chr4B 83.688 423 31 20 1634 2056 218970127 218970511 7.160000e-97 364.0
29 TraesCS5D01G161400 chr3B 85.227 88 10 3 76 161 605503623 605503537 1.740000e-13 87.9
30 TraesCS5D01G161400 chr3B 85.526 76 9 2 87 161 529798301 529798375 1.040000e-10 78.7
31 TraesCS5D01G161400 chr7B 95.833 48 2 0 114 161 337125037 337124990 1.040000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G161400 chr5D 251953810 251957320 3510 True 6484.00 6484 100.000000 1 3511 1 chr5D.!!$R1 3510
1 TraesCS5D01G161400 chr5A 334743887 334747327 3440 True 2326.50 2385 91.806000 1 3356 2 chr5A.!!$R1 3355
2 TraesCS5D01G161400 chr5A 651511766 651512301 535 False 734.00 734 91.636000 2789 3317 1 chr5A.!!$F2 528
3 TraesCS5D01G161400 chr5B 283999405 284002894 3489 True 1062.00 2065 92.982250 1 3380 4 chr5B.!!$R2 3379
4 TraesCS5D01G161400 chr2A 240758741 240760395 1654 False 644.50 723 86.368500 931 2514 2 chr2A.!!$F1 1583
5 TraesCS5D01G161400 chr2D 222646567 222648118 1551 False 653.50 721 86.631000 931 2514 2 chr2D.!!$F1 1583
6 TraesCS5D01G161400 chr2B 346669723 346671228 1505 True 641.50 715 86.676500 934 2514 2 chr2B.!!$R1 1580
7 TraesCS5D01G161400 chr1B 657317471 657319984 2513 False 450.00 536 84.260667 1 1636 3 chr1B.!!$F1 1635
8 TraesCS5D01G161400 chr1A 566595471 566598882 3411 False 346.55 473 87.326000 1 1636 4 chr1A.!!$F1 1635
9 TraesCS5D01G161400 chr4B 218969733 218970511 778 False 371.50 379 86.395500 1335 2056 2 chr4B.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 2893 0.249911 CCAGGCACGTCTAATAGGGC 60.250 60.000 0.0 0.0 0.00 5.19 F
1407 3478 1.009335 GTTCGTTGTGCGGGGAAAC 60.009 57.895 0.0 0.0 41.72 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 4318 2.158564 CGGTAGACCACATACCCCTAGA 60.159 54.545 0.00 0.0 39.71 2.43 R
3089 5612 0.813184 CTGTCCATTGGGTGTGCATC 59.187 55.000 2.09 0.0 34.93 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 123 8.712228 ATATATTTTTCATTCCTTGACCTCCC 57.288 34.615 0.00 0.00 32.84 4.30
126 139 8.499288 TTGACCTCCCCAAAAGTATAAAAATT 57.501 30.769 0.00 0.00 0.00 1.82
161 174 5.136828 TCAAAACCAGCAAATCTTACTCCA 58.863 37.500 0.00 0.00 0.00 3.86
211 224 0.882927 TGCTTCTTCGGGTGGTTTCG 60.883 55.000 0.00 0.00 0.00 3.46
252 265 3.753272 TGCTCAAATGTCTTAGGTGCTTC 59.247 43.478 0.00 0.00 0.00 3.86
385 413 1.985334 TTGCGCATGAAATCTTGCAG 58.015 45.000 12.75 12.56 44.35 4.41
503 1438 1.616159 GAGCAACTTTGGCCACCTTA 58.384 50.000 3.88 0.00 0.00 2.69
511 1446 0.698238 TTGGCCACCTTAGTCATGCT 59.302 50.000 3.88 0.00 0.00 3.79
514 1449 2.289565 GGCCACCTTAGTCATGCTTAC 58.710 52.381 0.00 0.00 0.00 2.34
515 1450 2.092914 GGCCACCTTAGTCATGCTTACT 60.093 50.000 0.00 0.00 0.00 2.24
558 1493 1.677552 CCAACACGTCTTAGGCCCT 59.322 57.895 0.00 0.00 0.00 5.19
559 1494 0.899720 CCAACACGTCTTAGGCCCTA 59.100 55.000 0.00 0.00 0.00 3.53
656 1591 4.908687 TGCTGGCACAACGCGACT 62.909 61.111 15.93 0.00 43.84 4.18
659 1594 1.837538 GCTGGCACAACGCGACTTAA 61.838 55.000 15.93 0.00 43.84 1.85
660 1595 0.584396 CTGGCACAACGCGACTTAAA 59.416 50.000 15.93 0.00 43.84 1.52
811 2835 2.938253 CTGCACGCGTGTTGTCAT 59.062 55.556 36.80 0.00 0.00 3.06
869 2893 0.249911 CCAGGCACGTCTAATAGGGC 60.250 60.000 0.00 0.00 0.00 5.19
1021 3054 2.128507 GGTGAGCCCCTCCGTCTAG 61.129 68.421 0.00 0.00 0.00 2.43
1307 3347 2.041891 TCCTAGATCCGATCCTCCCTTC 59.958 54.545 4.67 0.00 0.00 3.46
1340 3395 1.073763 GATGCCATGGCTGGGTACATA 59.926 52.381 35.53 14.13 43.36 2.29
1345 3400 3.282021 CCATGGCTGGGTACATATATGC 58.718 50.000 12.79 0.00 39.04 3.14
1351 3406 3.753272 GCTGGGTACATATATGCTTGTGG 59.247 47.826 12.79 1.51 0.00 4.17
1407 3478 1.009335 GTTCGTTGTGCGGGGAAAC 60.009 57.895 0.00 0.00 41.72 2.78
1479 3556 5.473039 AGTTCTATGCCATTTTTCTGCAAC 58.527 37.500 0.00 0.00 38.69 4.17
1571 3699 5.403897 AAAATACACGACGAGGCATTATG 57.596 39.130 0.00 0.00 0.00 1.90
1711 4026 2.098607 CGCTGAAGCATGTTCATTGGAT 59.901 45.455 10.00 0.00 42.21 3.41
1716 4031 7.574404 CGCTGAAGCATGTTCATTGGATATATT 60.574 37.037 10.00 0.00 42.21 1.28
1798 4113 4.082625 TGCTGGATGCTTTAGTGAAATGTG 60.083 41.667 0.00 0.00 43.37 3.21
1964 4317 4.699735 TGCTTACCATATGTTCCTTGTGTG 59.300 41.667 1.24 0.00 0.00 3.82
1965 4318 4.700213 GCTTACCATATGTTCCTTGTGTGT 59.300 41.667 1.24 0.00 0.00 3.72
2540 4899 6.772716 CCCTATGCACACCTTGATAGTATTTT 59.227 38.462 0.00 0.00 0.00 1.82
2555 4914 5.649782 AGTATTTTGTTTGAGCCATCAGG 57.350 39.130 0.00 0.00 36.61 3.86
2568 4927 2.164422 GCCATCAGGTTTTGCTACCTTC 59.836 50.000 3.41 0.00 46.39 3.46
2573 4932 3.139077 CAGGTTTTGCTACCTTCGTTCT 58.861 45.455 3.41 0.00 46.39 3.01
2580 4939 3.682696 TGCTACCTTCGTTCTGAGACTA 58.317 45.455 0.00 0.00 0.00 2.59
2590 4949 4.278669 TCGTTCTGAGACTACTTGAAGCTT 59.721 41.667 0.00 0.00 0.00 3.74
2638 4999 8.233190 GGCATATCTGTTGAACTATTTGCTATC 58.767 37.037 18.01 6.33 0.00 2.08
2656 5017 2.839486 TCTGCCTGTGTTACCAGAAG 57.161 50.000 3.10 1.72 34.23 2.85
2659 5020 3.135712 TCTGCCTGTGTTACCAGAAGAAA 59.864 43.478 3.10 0.00 34.23 2.52
2707 5068 4.201940 TGTGCTATGCTGTCATATGTTTGC 60.202 41.667 1.90 6.18 34.88 3.68
2733 5094 8.083462 TCGTTCACCTTATAATGTTATGATGC 57.917 34.615 0.00 0.00 0.00 3.91
2753 5114 7.624706 GATGCTTTTCATCTCTTTGCATATG 57.375 36.000 0.00 0.00 46.29 1.78
2765 5126 6.891361 TCTCTTTGCATATGGGAAATTCTTCA 59.109 34.615 4.56 0.00 36.17 3.02
2784 5145 5.300034 TCTTCAATTGCTTGTTGTCATCTGT 59.700 36.000 0.00 0.00 33.87 3.41
2787 5148 4.924305 ATTGCTTGTTGTCATCTGTGTT 57.076 36.364 0.00 0.00 0.00 3.32
2837 5200 9.662545 CTAAATGTTGGTTTGCAAATTTTTAGG 57.337 29.630 16.21 5.06 0.00 2.69
2848 5211 5.922739 CAAATTTTTAGGGTTTGCTGGTC 57.077 39.130 0.00 0.00 0.00 4.02
2911 5275 7.590279 TGAAATTCTGTTAATTCTTTCGGGTC 58.410 34.615 0.00 0.00 0.00 4.46
3040 5550 7.103641 GGAAGACAATACAACCTGTCATCTTA 58.896 38.462 5.13 0.00 43.64 2.10
3041 5551 7.064728 GGAAGACAATACAACCTGTCATCTTAC 59.935 40.741 5.13 0.00 43.64 2.34
3042 5552 7.004555 AGACAATACAACCTGTCATCTTACA 57.995 36.000 5.13 0.00 43.64 2.41
3062 5578 8.531982 TCTTACATAGTAGTCAACTCAAATGCT 58.468 33.333 0.00 0.00 39.80 3.79
3100 5623 2.352422 GGCTCAGATGCACACCCA 59.648 61.111 0.00 0.00 34.04 4.51
3101 5624 1.303561 GGCTCAGATGCACACCCAA 60.304 57.895 0.00 0.00 34.04 4.12
3104 5627 1.100510 CTCAGATGCACACCCAATGG 58.899 55.000 0.00 0.00 37.80 3.16
3109 5632 0.612732 ATGCACACCCAATGGACAGG 60.613 55.000 0.00 0.00 34.81 4.00
3147 5670 7.837863 TCCTAGTTGTACATGTAGAGGAAAAG 58.162 38.462 5.62 0.26 0.00 2.27
3192 5715 1.584495 GGCTTTGCCTAAACACCCG 59.416 57.895 0.73 0.00 46.69 5.28
3386 5909 3.138798 GGCCGAGCCTCGTGTAGA 61.139 66.667 13.83 0.00 46.69 2.59
3387 5910 2.491022 GGCCGAGCCTCGTGTAGAT 61.491 63.158 13.83 0.00 46.69 1.98
3388 5911 1.170919 GGCCGAGCCTCGTGTAGATA 61.171 60.000 13.83 0.00 46.69 1.98
3389 5912 0.666913 GCCGAGCCTCGTGTAGATAA 59.333 55.000 13.83 0.00 38.40 1.75
3390 5913 1.066605 GCCGAGCCTCGTGTAGATAAA 59.933 52.381 13.83 0.00 38.40 1.40
3391 5914 2.480759 GCCGAGCCTCGTGTAGATAAAA 60.481 50.000 13.83 0.00 38.40 1.52
3392 5915 3.372954 CCGAGCCTCGTGTAGATAAAAG 58.627 50.000 13.83 0.00 38.40 2.27
3393 5916 3.372954 CGAGCCTCGTGTAGATAAAAGG 58.627 50.000 5.82 0.00 34.72 3.11
3394 5917 3.181489 CGAGCCTCGTGTAGATAAAAGGT 60.181 47.826 5.82 0.00 34.72 3.50
3395 5918 4.677250 CGAGCCTCGTGTAGATAAAAGGTT 60.677 45.833 5.82 0.00 34.72 3.50
3396 5919 5.161943 AGCCTCGTGTAGATAAAAGGTTT 57.838 39.130 0.00 0.00 0.00 3.27
3397 5920 5.176592 AGCCTCGTGTAGATAAAAGGTTTC 58.823 41.667 0.00 0.00 0.00 2.78
3398 5921 5.046520 AGCCTCGTGTAGATAAAAGGTTTCT 60.047 40.000 0.00 0.00 0.00 2.52
3399 5922 5.642491 GCCTCGTGTAGATAAAAGGTTTCTT 59.358 40.000 0.00 0.00 34.07 2.52
3400 5923 6.148976 GCCTCGTGTAGATAAAAGGTTTCTTT 59.851 38.462 0.00 0.00 44.40 2.52
3401 5924 7.332678 GCCTCGTGTAGATAAAAGGTTTCTTTA 59.667 37.037 0.00 0.00 41.92 1.85
3402 5925 8.870879 CCTCGTGTAGATAAAAGGTTTCTTTAG 58.129 37.037 0.00 0.00 41.92 1.85
3403 5926 8.767478 TCGTGTAGATAAAAGGTTTCTTTAGG 57.233 34.615 0.00 0.00 41.92 2.69
3404 5927 7.332678 TCGTGTAGATAAAAGGTTTCTTTAGGC 59.667 37.037 0.00 0.00 41.92 3.93
3405 5928 7.333672 CGTGTAGATAAAAGGTTTCTTTAGGCT 59.666 37.037 0.00 0.00 41.92 4.58
3406 5929 8.666573 GTGTAGATAAAAGGTTTCTTTAGGCTC 58.333 37.037 0.00 0.00 41.92 4.70
3407 5930 8.603304 TGTAGATAAAAGGTTTCTTTAGGCTCT 58.397 33.333 0.00 0.00 41.92 4.09
3408 5931 7.929941 AGATAAAAGGTTTCTTTAGGCTCTG 57.070 36.000 0.00 0.00 41.92 3.35
3409 5932 4.855715 AAAAGGTTTCTTTAGGCTCTGC 57.144 40.909 0.00 0.00 41.92 4.26
3410 5933 3.797559 AAGGTTTCTTTAGGCTCTGCT 57.202 42.857 0.00 0.00 0.00 4.24
3411 5934 4.910458 AAGGTTTCTTTAGGCTCTGCTA 57.090 40.909 0.00 0.00 0.00 3.49
3412 5935 5.443230 AAGGTTTCTTTAGGCTCTGCTAT 57.557 39.130 0.00 0.00 0.00 2.97
3413 5936 4.775236 AGGTTTCTTTAGGCTCTGCTATG 58.225 43.478 0.00 0.00 0.00 2.23
3414 5937 3.879892 GGTTTCTTTAGGCTCTGCTATGG 59.120 47.826 0.00 0.00 0.00 2.74
3415 5938 4.518249 GTTTCTTTAGGCTCTGCTATGGT 58.482 43.478 0.00 0.00 0.00 3.55
3416 5939 5.396436 GGTTTCTTTAGGCTCTGCTATGGTA 60.396 44.000 0.00 0.00 0.00 3.25
3417 5940 6.292150 GTTTCTTTAGGCTCTGCTATGGTAT 58.708 40.000 0.00 0.00 0.00 2.73
3418 5941 5.474578 TCTTTAGGCTCTGCTATGGTATG 57.525 43.478 0.00 0.00 0.00 2.39
3419 5942 4.901849 TCTTTAGGCTCTGCTATGGTATGT 59.098 41.667 0.00 0.00 0.00 2.29
3420 5943 6.075315 TCTTTAGGCTCTGCTATGGTATGTA 58.925 40.000 0.00 0.00 0.00 2.29
3421 5944 6.726299 TCTTTAGGCTCTGCTATGGTATGTAT 59.274 38.462 0.00 0.00 0.00 2.29
3422 5945 6.935240 TTAGGCTCTGCTATGGTATGTATT 57.065 37.500 0.00 0.00 0.00 1.89
3423 5946 5.157940 AGGCTCTGCTATGGTATGTATTG 57.842 43.478 0.00 0.00 0.00 1.90
3424 5947 3.686726 GGCTCTGCTATGGTATGTATTGC 59.313 47.826 0.00 0.00 0.00 3.56
3425 5948 3.686726 GCTCTGCTATGGTATGTATTGCC 59.313 47.826 0.00 0.00 0.00 4.52
3426 5949 3.925379 TCTGCTATGGTATGTATTGCCG 58.075 45.455 0.00 0.00 0.00 5.69
3427 5950 3.576550 TCTGCTATGGTATGTATTGCCGA 59.423 43.478 0.00 0.00 0.00 5.54
3428 5951 4.039852 TCTGCTATGGTATGTATTGCCGAA 59.960 41.667 0.00 0.00 0.00 4.30
3429 5952 4.062293 TGCTATGGTATGTATTGCCGAAC 58.938 43.478 0.00 0.00 0.00 3.95
3430 5953 3.122948 GCTATGGTATGTATTGCCGAACG 59.877 47.826 0.00 0.00 0.00 3.95
3431 5954 1.292061 TGGTATGTATTGCCGAACGC 58.708 50.000 0.00 0.00 38.31 4.84
3432 5955 0.584876 GGTATGTATTGCCGAACGCC 59.415 55.000 0.00 0.00 36.24 5.68
3433 5956 0.584876 GTATGTATTGCCGAACGCCC 59.415 55.000 0.00 0.00 36.24 6.13
3434 5957 0.876777 TATGTATTGCCGAACGCCCG 60.877 55.000 0.00 0.00 36.24 6.13
3435 5958 2.509786 GTATTGCCGAACGCCCGA 60.510 61.111 0.00 0.00 36.24 5.14
3436 5959 2.101835 GTATTGCCGAACGCCCGAA 61.102 57.895 0.00 0.00 36.24 4.30
3437 5960 2.101835 TATTGCCGAACGCCCGAAC 61.102 57.895 0.00 0.00 36.24 3.95
3441 5964 4.992511 CCGAACGCCCGAACCCAA 62.993 66.667 0.00 0.00 0.00 4.12
3442 5965 2.744709 CGAACGCCCGAACCCAAT 60.745 61.111 0.00 0.00 0.00 3.16
3443 5966 2.329614 CGAACGCCCGAACCCAATT 61.330 57.895 0.00 0.00 0.00 2.32
3444 5967 1.858372 CGAACGCCCGAACCCAATTT 61.858 55.000 0.00 0.00 0.00 1.82
3445 5968 0.109458 GAACGCCCGAACCCAATTTC 60.109 55.000 0.00 0.00 0.00 2.17
3446 5969 1.529152 AACGCCCGAACCCAATTTCC 61.529 55.000 0.00 0.00 0.00 3.13
3447 5970 2.882132 GCCCGAACCCAATTTCCG 59.118 61.111 0.00 0.00 0.00 4.30
3448 5971 1.974875 GCCCGAACCCAATTTCCGT 60.975 57.895 0.00 0.00 0.00 4.69
3449 5972 1.880186 CCCGAACCCAATTTCCGTG 59.120 57.895 0.00 0.00 0.00 4.94
3450 5973 0.606944 CCCGAACCCAATTTCCGTGA 60.607 55.000 0.00 0.00 0.00 4.35
3451 5974 0.802494 CCGAACCCAATTTCCGTGAG 59.198 55.000 0.00 0.00 0.00 3.51
3463 5986 4.919653 CGTGAGGCTGTGCTATGT 57.080 55.556 0.00 0.00 0.00 2.29
3464 5987 2.670635 CGTGAGGCTGTGCTATGTC 58.329 57.895 0.00 0.00 0.00 3.06
3465 5988 0.108662 CGTGAGGCTGTGCTATGTCA 60.109 55.000 0.00 0.00 0.00 3.58
3466 5989 1.472201 CGTGAGGCTGTGCTATGTCAT 60.472 52.381 0.00 0.00 0.00 3.06
3467 5990 2.636830 GTGAGGCTGTGCTATGTCATT 58.363 47.619 0.00 0.00 0.00 2.57
3468 5991 2.611292 GTGAGGCTGTGCTATGTCATTC 59.389 50.000 0.00 0.00 0.00 2.67
3469 5992 2.236893 TGAGGCTGTGCTATGTCATTCA 59.763 45.455 0.00 0.00 0.00 2.57
3470 5993 2.871022 GAGGCTGTGCTATGTCATTCAG 59.129 50.000 0.00 0.00 0.00 3.02
3471 5994 2.502947 AGGCTGTGCTATGTCATTCAGA 59.497 45.455 0.00 0.00 0.00 3.27
3472 5995 3.136077 AGGCTGTGCTATGTCATTCAGAT 59.864 43.478 0.00 0.00 0.00 2.90
3473 5996 3.497640 GGCTGTGCTATGTCATTCAGATC 59.502 47.826 0.00 0.00 0.00 2.75
3474 5997 4.124970 GCTGTGCTATGTCATTCAGATCA 58.875 43.478 0.00 0.00 0.00 2.92
3475 5998 4.573607 GCTGTGCTATGTCATTCAGATCAA 59.426 41.667 0.00 0.00 0.00 2.57
3476 5999 5.065602 GCTGTGCTATGTCATTCAGATCAAA 59.934 40.000 0.00 0.00 0.00 2.69
3477 6000 6.673154 TGTGCTATGTCATTCAGATCAAAG 57.327 37.500 0.00 0.00 0.00 2.77
3478 6001 5.587443 TGTGCTATGTCATTCAGATCAAAGG 59.413 40.000 0.00 0.00 0.00 3.11
3479 6002 5.587844 GTGCTATGTCATTCAGATCAAAGGT 59.412 40.000 0.00 0.00 0.00 3.50
3480 6003 5.587443 TGCTATGTCATTCAGATCAAAGGTG 59.413 40.000 0.00 0.00 0.00 4.00
3481 6004 5.587844 GCTATGTCATTCAGATCAAAGGTGT 59.412 40.000 0.00 0.00 0.00 4.16
3482 6005 6.763135 GCTATGTCATTCAGATCAAAGGTGTA 59.237 38.462 0.00 0.00 0.00 2.90
3483 6006 7.280876 GCTATGTCATTCAGATCAAAGGTGTAA 59.719 37.037 0.00 0.00 0.00 2.41
3484 6007 7.621428 ATGTCATTCAGATCAAAGGTGTAAG 57.379 36.000 0.00 0.00 0.00 2.34
3485 6008 5.939883 TGTCATTCAGATCAAAGGTGTAAGG 59.060 40.000 0.00 0.00 0.00 2.69
3486 6009 6.173339 GTCATTCAGATCAAAGGTGTAAGGA 58.827 40.000 0.00 0.00 0.00 3.36
3487 6010 6.092807 GTCATTCAGATCAAAGGTGTAAGGAC 59.907 42.308 0.00 0.00 0.00 3.85
3488 6011 5.560722 TTCAGATCAAAGGTGTAAGGACA 57.439 39.130 0.00 0.00 0.00 4.02
3489 6012 5.762179 TCAGATCAAAGGTGTAAGGACAT 57.238 39.130 0.00 0.00 38.04 3.06
3490 6013 5.734720 TCAGATCAAAGGTGTAAGGACATC 58.265 41.667 0.00 0.00 38.04 3.06
3492 6015 6.667848 TCAGATCAAAGGTGTAAGGACATCTA 59.332 38.462 0.00 0.00 46.83 1.98
3493 6016 6.758886 CAGATCAAAGGTGTAAGGACATCTAC 59.241 42.308 0.00 0.00 46.83 2.59
3494 6017 6.440647 AGATCAAAGGTGTAAGGACATCTACA 59.559 38.462 0.00 0.00 46.83 2.74
3495 6018 6.428083 TCAAAGGTGTAAGGACATCTACAA 57.572 37.500 0.00 0.00 46.83 2.41
3496 6019 6.228258 TCAAAGGTGTAAGGACATCTACAAC 58.772 40.000 0.00 0.00 46.83 3.32
3497 6020 4.451629 AGGTGTAAGGACATCTACAACG 57.548 45.455 0.00 0.00 45.63 4.10
3498 6021 2.928116 GGTGTAAGGACATCTACAACGC 59.072 50.000 0.00 0.00 38.04 4.84
3499 6022 2.928116 GTGTAAGGACATCTACAACGCC 59.072 50.000 0.00 0.00 38.04 5.68
3500 6023 2.093869 TGTAAGGACATCTACAACGCCC 60.094 50.000 0.00 0.00 0.00 6.13
3501 6024 0.981183 AAGGACATCTACAACGCCCA 59.019 50.000 0.00 0.00 0.00 5.36
3502 6025 0.981183 AGGACATCTACAACGCCCAA 59.019 50.000 0.00 0.00 0.00 4.12
3503 6026 1.084289 GGACATCTACAACGCCCAAC 58.916 55.000 0.00 0.00 0.00 3.77
3504 6027 1.084289 GACATCTACAACGCCCAACC 58.916 55.000 0.00 0.00 0.00 3.77
3505 6028 0.322187 ACATCTACAACGCCCAACCC 60.322 55.000 0.00 0.00 0.00 4.11
3506 6029 0.035439 CATCTACAACGCCCAACCCT 60.035 55.000 0.00 0.00 0.00 4.34
3507 6030 0.696501 ATCTACAACGCCCAACCCTT 59.303 50.000 0.00 0.00 0.00 3.95
3508 6031 1.350071 TCTACAACGCCCAACCCTTA 58.650 50.000 0.00 0.00 0.00 2.69
3509 6032 1.698532 TCTACAACGCCCAACCCTTAA 59.301 47.619 0.00 0.00 0.00 1.85
3510 6033 2.106166 TCTACAACGCCCAACCCTTAAA 59.894 45.455 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 121 7.038658 TGAGGGACAATTTTTATACTTTTGGGG 60.039 37.037 0.00 0.00 0.00 4.96
109 122 7.902087 TGAGGGACAATTTTTATACTTTTGGG 58.098 34.615 0.00 0.00 0.00 4.12
110 123 9.203421 GTTGAGGGACAATTTTTATACTTTTGG 57.797 33.333 0.00 0.00 40.76 3.28
126 139 3.287222 CTGGTTTTGAAGTTGAGGGACA 58.713 45.455 0.00 0.00 0.00 4.02
171 184 3.519510 CAGGAGGGACCAAACTTATCTGA 59.480 47.826 0.00 0.00 42.04 3.27
183 196 1.219393 CGAAGAAGCAGGAGGGACC 59.781 63.158 0.00 0.00 39.35 4.46
211 224 1.665679 CATACGACTCCATGTTGGCAC 59.334 52.381 0.00 0.00 37.47 5.01
369 397 0.171679 TGCCTGCAAGATTTCATGCG 59.828 50.000 3.65 0.00 42.84 4.73
385 413 1.953686 TGCTCAAACTTTGTAGGTGCC 59.046 47.619 1.44 0.00 0.00 5.01
482 1417 2.644992 GTGGCCAAAGTTGCTCCG 59.355 61.111 7.24 0.00 0.00 4.63
489 1424 2.795329 CATGACTAAGGTGGCCAAAGT 58.205 47.619 7.24 9.20 0.00 2.66
503 1438 0.391661 CCGGCACAGTAAGCATGACT 60.392 55.000 0.00 0.00 0.00 3.41
511 1446 0.107410 CTAATGGGCCGGCACAGTAA 60.107 55.000 35.42 22.65 29.25 2.24
514 1449 3.211963 GCTAATGGGCCGGCACAG 61.212 66.667 37.68 24.58 30.39 3.66
515 1450 3.697439 GAGCTAATGGGCCGGCACA 62.697 63.158 37.41 37.41 0.00 4.57
558 1493 2.298446 TCGTTTAACCATGTGTCGGGTA 59.702 45.455 0.00 0.00 36.05 3.69
559 1494 1.070445 TCGTTTAACCATGTGTCGGGT 59.930 47.619 0.00 0.00 39.65 5.28
635 1570 4.345962 GCGTTGTGCCAGCATGCA 62.346 61.111 21.98 0.00 39.37 3.96
729 1716 2.504367 CTATGGCCCGTTTATCCCTTG 58.496 52.381 0.00 0.00 0.00 3.61
907 2932 3.326880 GGGGAGAGAGTGGTCTTTTAACA 59.673 47.826 0.00 0.00 30.97 2.41
1021 3054 2.907236 GGGAGGAAGAGGAGCTGC 59.093 66.667 0.00 0.00 0.00 5.25
1307 3347 1.236616 TGGCATCGCACAAGGAACAG 61.237 55.000 0.00 0.00 0.00 3.16
1340 3395 0.819582 GCCAGCAACCACAAGCATAT 59.180 50.000 0.00 0.00 0.00 1.78
1345 3400 0.962356 CCTAGGCCAGCAACCACAAG 60.962 60.000 5.01 0.00 0.00 3.16
1351 3406 1.448013 GTCGACCTAGGCCAGCAAC 60.448 63.158 9.30 0.00 0.00 4.17
1407 3478 0.946221 ACGAGACAGAAAAGGCGCAG 60.946 55.000 10.83 0.00 0.00 5.18
1479 3556 3.119173 TCCAAAAGACCAAGTGCAGTTTG 60.119 43.478 3.38 3.66 0.00 2.93
1571 3699 5.638234 GGTAGATAACACAAGAGACAACCAC 59.362 44.000 0.00 0.00 0.00 4.16
1798 4113 4.269363 GCAGCAATGCTTAATGGACAATTC 59.731 41.667 4.36 0.00 36.40 2.17
1831 4171 5.046448 TGCATCAATTATTGGACCAAAAGCT 60.046 36.000 11.82 0.00 0.00 3.74
1912 4255 7.661847 GGGAATCAATTATATCGTGGAGAAAGT 59.338 37.037 0.00 0.00 0.00 2.66
1964 4317 3.229293 GGTAGACCACATACCCCTAGAC 58.771 54.545 0.00 0.00 37.33 2.59
1965 4318 2.158564 CGGTAGACCACATACCCCTAGA 60.159 54.545 0.00 0.00 39.71 2.43
2540 4899 2.224018 GCAAAACCTGATGGCTCAAACA 60.224 45.455 0.00 0.00 36.63 2.83
2555 4914 4.056050 TCTCAGAACGAAGGTAGCAAAAC 58.944 43.478 0.00 0.00 0.00 2.43
2568 4927 4.167554 AGCTTCAAGTAGTCTCAGAACG 57.832 45.455 0.00 0.00 0.00 3.95
2573 4932 3.393800 GCACAAGCTTCAAGTAGTCTCA 58.606 45.455 0.00 0.00 37.91 3.27
2590 4949 4.381612 CCTCGACATAAAGGTTCTAGCACA 60.382 45.833 0.00 0.00 0.00 4.57
2638 4999 2.839486 TCTTCTGGTAACACAGGCAG 57.161 50.000 0.00 0.00 46.17 4.85
2656 5017 8.827677 AGCATACGATTACTAAACCATTCTTTC 58.172 33.333 0.00 0.00 0.00 2.62
2659 5020 7.224753 CACAGCATACGATTACTAAACCATTCT 59.775 37.037 0.00 0.00 0.00 2.40
2666 5027 5.712217 GCACACAGCATACGATTACTAAA 57.288 39.130 0.00 0.00 44.79 1.85
2707 5068 8.223769 GCATCATAACATTATAAGGTGAACGAG 58.776 37.037 3.11 0.00 0.00 4.18
2733 5094 6.704289 TCCCATATGCAAAGAGATGAAAAG 57.296 37.500 0.00 0.00 0.00 2.27
2747 5108 6.285990 AGCAATTGAAGAATTTCCCATATGC 58.714 36.000 10.34 13.22 32.09 3.14
2753 5114 5.759763 ACAACAAGCAATTGAAGAATTTCCC 59.240 36.000 10.34 0.00 32.09 3.97
2765 5126 4.924305 ACACAGATGACAACAAGCAATT 57.076 36.364 0.00 0.00 0.00 2.32
2784 5145 7.461182 AAAACCAGTAGCAAGCAATATAACA 57.539 32.000 0.00 0.00 0.00 2.41
2896 5260 5.411669 GCTCAAAGAGACCCGAAAGAATTAA 59.588 40.000 0.00 0.00 0.00 1.40
2911 5275 1.534595 GCTGTCAAGTGGCTCAAAGAG 59.465 52.381 0.00 0.00 0.00 2.85
3002 5510 7.142680 TGTATTGTCTTCCGAAATGAAAAACC 58.857 34.615 0.00 0.00 0.00 3.27
3048 5564 9.455847 GAAATGGATATTAGCATTTGAGTTGAC 57.544 33.333 0.00 0.00 0.00 3.18
3062 5578 4.507335 GCCCAGGCTCAGAAATGGATATTA 60.507 45.833 0.08 0.00 38.26 0.98
3089 5612 0.813184 CTGTCCATTGGGTGTGCATC 59.187 55.000 2.09 0.00 34.93 3.91
3093 5616 1.304381 CCCCTGTCCATTGGGTGTG 60.304 63.158 2.09 0.00 41.82 3.82
3094 5617 3.180282 CCCCTGTCCATTGGGTGT 58.820 61.111 2.09 0.00 41.82 4.16
3123 5646 7.612677 ACTTTTCCTCTACATGTACAACTAGG 58.387 38.462 0.08 3.32 0.00 3.02
3147 5670 1.112113 TCCGAATAGGCTGGACAGAC 58.888 55.000 3.00 0.00 40.77 3.51
3192 5715 1.221414 AAACTGCAAGAGCGTGACTC 58.779 50.000 0.00 0.00 46.23 3.36
3380 5903 8.563123 AGCCTAAAGAAACCTTTTATCTACAC 57.437 34.615 0.00 0.00 35.63 2.90
3381 5904 8.603304 AGAGCCTAAAGAAACCTTTTATCTACA 58.397 33.333 0.00 0.00 35.63 2.74
3382 5905 8.884726 CAGAGCCTAAAGAAACCTTTTATCTAC 58.115 37.037 0.00 0.00 35.63 2.59
3383 5906 7.553044 GCAGAGCCTAAAGAAACCTTTTATCTA 59.447 37.037 0.00 0.00 35.63 1.98
3384 5907 6.375736 GCAGAGCCTAAAGAAACCTTTTATCT 59.624 38.462 0.00 0.00 35.63 1.98
3385 5908 6.375736 AGCAGAGCCTAAAGAAACCTTTTATC 59.624 38.462 0.00 0.00 35.63 1.75
3386 5909 6.249192 AGCAGAGCCTAAAGAAACCTTTTAT 58.751 36.000 0.00 0.00 35.63 1.40
3387 5910 5.631119 AGCAGAGCCTAAAGAAACCTTTTA 58.369 37.500 0.00 0.00 35.63 1.52
3388 5911 4.474394 AGCAGAGCCTAAAGAAACCTTTT 58.526 39.130 0.00 0.00 35.63 2.27
3389 5912 4.105754 AGCAGAGCCTAAAGAAACCTTT 57.894 40.909 0.00 0.00 37.59 3.11
3390 5913 3.797559 AGCAGAGCCTAAAGAAACCTT 57.202 42.857 0.00 0.00 0.00 3.50
3391 5914 4.384647 CCATAGCAGAGCCTAAAGAAACCT 60.385 45.833 0.00 0.00 0.00 3.50
3392 5915 3.879892 CCATAGCAGAGCCTAAAGAAACC 59.120 47.826 0.00 0.00 0.00 3.27
3393 5916 4.518249 ACCATAGCAGAGCCTAAAGAAAC 58.482 43.478 0.00 0.00 0.00 2.78
3394 5917 4.844349 ACCATAGCAGAGCCTAAAGAAA 57.156 40.909 0.00 0.00 0.00 2.52
3395 5918 5.366768 ACATACCATAGCAGAGCCTAAAGAA 59.633 40.000 0.00 0.00 0.00 2.52
3396 5919 4.901849 ACATACCATAGCAGAGCCTAAAGA 59.098 41.667 0.00 0.00 0.00 2.52
3397 5920 5.220710 ACATACCATAGCAGAGCCTAAAG 57.779 43.478 0.00 0.00 0.00 1.85
3398 5921 6.935240 ATACATACCATAGCAGAGCCTAAA 57.065 37.500 0.00 0.00 0.00 1.85
3399 5922 6.701340 CAATACATACCATAGCAGAGCCTAA 58.299 40.000 0.00 0.00 0.00 2.69
3400 5923 5.337571 GCAATACATACCATAGCAGAGCCTA 60.338 44.000 0.00 0.00 0.00 3.93
3401 5924 4.564406 GCAATACATACCATAGCAGAGCCT 60.564 45.833 0.00 0.00 0.00 4.58
3402 5925 3.686726 GCAATACATACCATAGCAGAGCC 59.313 47.826 0.00 0.00 0.00 4.70
3403 5926 3.686726 GGCAATACATACCATAGCAGAGC 59.313 47.826 0.00 0.00 0.00 4.09
3404 5927 3.928992 CGGCAATACATACCATAGCAGAG 59.071 47.826 0.00 0.00 0.00 3.35
3405 5928 3.576550 TCGGCAATACATACCATAGCAGA 59.423 43.478 0.00 0.00 0.00 4.26
3406 5929 3.925379 TCGGCAATACATACCATAGCAG 58.075 45.455 0.00 0.00 0.00 4.24
3407 5930 4.062293 GTTCGGCAATACATACCATAGCA 58.938 43.478 0.00 0.00 0.00 3.49
3408 5931 3.122948 CGTTCGGCAATACATACCATAGC 59.877 47.826 0.00 0.00 0.00 2.97
3409 5932 3.122948 GCGTTCGGCAATACATACCATAG 59.877 47.826 0.00 0.00 42.87 2.23
3410 5933 3.061322 GCGTTCGGCAATACATACCATA 58.939 45.455 0.00 0.00 42.87 2.74
3411 5934 1.871039 GCGTTCGGCAATACATACCAT 59.129 47.619 0.00 0.00 42.87 3.55
3412 5935 1.292061 GCGTTCGGCAATACATACCA 58.708 50.000 0.00 0.00 42.87 3.25
3413 5936 0.584876 GGCGTTCGGCAATACATACC 59.415 55.000 13.49 0.00 46.16 2.73
3414 5937 0.584876 GGGCGTTCGGCAATACATAC 59.415 55.000 19.20 0.00 46.16 2.39
3415 5938 0.876777 CGGGCGTTCGGCAATACATA 60.877 55.000 19.20 0.00 46.16 2.29
3416 5939 2.177580 CGGGCGTTCGGCAATACAT 61.178 57.895 19.20 0.00 46.16 2.29
3417 5940 2.783241 TTCGGGCGTTCGGCAATACA 62.783 55.000 19.20 0.00 46.16 2.29
3418 5941 2.101835 TTCGGGCGTTCGGCAATAC 61.102 57.895 19.20 2.44 46.16 1.89
3419 5942 2.101835 GTTCGGGCGTTCGGCAATA 61.102 57.895 19.20 2.52 46.16 1.90
3420 5943 3.428282 GTTCGGGCGTTCGGCAAT 61.428 61.111 19.20 0.00 46.16 3.56
3424 5947 4.992511 TTGGGTTCGGGCGTTCGG 62.993 66.667 0.00 0.00 0.00 4.30
3425 5948 1.858372 AAATTGGGTTCGGGCGTTCG 61.858 55.000 0.00 0.00 0.00 3.95
3426 5949 0.109458 GAAATTGGGTTCGGGCGTTC 60.109 55.000 0.00 0.00 0.00 3.95
3427 5950 1.529152 GGAAATTGGGTTCGGGCGTT 61.529 55.000 0.00 0.00 0.00 4.84
3428 5951 1.974875 GGAAATTGGGTTCGGGCGT 60.975 57.895 0.00 0.00 0.00 5.68
3429 5952 2.882132 GGAAATTGGGTTCGGGCG 59.118 61.111 0.00 0.00 0.00 6.13
3430 5953 1.974875 ACGGAAATTGGGTTCGGGC 60.975 57.895 0.00 0.00 33.42 6.13
3431 5954 0.606944 TCACGGAAATTGGGTTCGGG 60.607 55.000 0.00 0.00 33.42 5.14
3432 5955 0.802494 CTCACGGAAATTGGGTTCGG 59.198 55.000 0.00 0.00 34.83 4.30
3433 5956 0.802494 CCTCACGGAAATTGGGTTCG 59.198 55.000 0.00 0.00 0.00 3.95
3434 5957 0.526211 GCCTCACGGAAATTGGGTTC 59.474 55.000 0.00 0.00 0.00 3.62
3435 5958 0.112412 AGCCTCACGGAAATTGGGTT 59.888 50.000 0.00 0.00 0.00 4.11
3436 5959 0.609131 CAGCCTCACGGAAATTGGGT 60.609 55.000 0.00 0.00 0.00 4.51
3437 5960 0.609131 ACAGCCTCACGGAAATTGGG 60.609 55.000 0.00 0.00 0.00 4.12
3438 5961 0.523072 CACAGCCTCACGGAAATTGG 59.477 55.000 0.00 0.00 0.00 3.16
3439 5962 0.109597 GCACAGCCTCACGGAAATTG 60.110 55.000 0.00 0.00 0.00 2.32
3440 5963 0.250901 AGCACAGCCTCACGGAAATT 60.251 50.000 0.00 0.00 0.00 1.82
3441 5964 0.613260 TAGCACAGCCTCACGGAAAT 59.387 50.000 0.00 0.00 0.00 2.17
3442 5965 0.613260 ATAGCACAGCCTCACGGAAA 59.387 50.000 0.00 0.00 0.00 3.13
3443 5966 0.108186 CATAGCACAGCCTCACGGAA 60.108 55.000 0.00 0.00 0.00 4.30
3444 5967 1.257750 ACATAGCACAGCCTCACGGA 61.258 55.000 0.00 0.00 0.00 4.69
3445 5968 0.807667 GACATAGCACAGCCTCACGG 60.808 60.000 0.00 0.00 0.00 4.94
3446 5969 0.108662 TGACATAGCACAGCCTCACG 60.109 55.000 0.00 0.00 0.00 4.35
3447 5970 2.322355 ATGACATAGCACAGCCTCAC 57.678 50.000 0.00 0.00 0.00 3.51
3448 5971 2.236893 TGAATGACATAGCACAGCCTCA 59.763 45.455 0.00 0.00 0.00 3.86
3449 5972 2.871022 CTGAATGACATAGCACAGCCTC 59.129 50.000 0.00 0.00 0.00 4.70
3450 5973 2.502947 TCTGAATGACATAGCACAGCCT 59.497 45.455 0.00 0.00 0.00 4.58
3451 5974 2.910199 TCTGAATGACATAGCACAGCC 58.090 47.619 0.00 0.00 0.00 4.85
3452 5975 4.124970 TGATCTGAATGACATAGCACAGC 58.875 43.478 0.00 0.00 0.00 4.40
3453 5976 6.238402 CCTTTGATCTGAATGACATAGCACAG 60.238 42.308 0.00 0.00 0.00 3.66
3454 5977 5.587443 CCTTTGATCTGAATGACATAGCACA 59.413 40.000 0.00 0.00 0.00 4.57
3455 5978 5.587844 ACCTTTGATCTGAATGACATAGCAC 59.412 40.000 0.00 0.00 0.00 4.40
3456 5979 5.587443 CACCTTTGATCTGAATGACATAGCA 59.413 40.000 0.00 0.00 0.00 3.49
3457 5980 5.587844 ACACCTTTGATCTGAATGACATAGC 59.412 40.000 0.00 0.00 0.00 2.97
3458 5981 8.722480 TTACACCTTTGATCTGAATGACATAG 57.278 34.615 0.00 0.00 0.00 2.23
3459 5982 7.770433 CCTTACACCTTTGATCTGAATGACATA 59.230 37.037 0.00 0.00 0.00 2.29
3460 5983 6.600822 CCTTACACCTTTGATCTGAATGACAT 59.399 38.462 0.00 0.00 0.00 3.06
3461 5984 5.939883 CCTTACACCTTTGATCTGAATGACA 59.060 40.000 0.00 0.00 0.00 3.58
3462 5985 6.092807 GTCCTTACACCTTTGATCTGAATGAC 59.907 42.308 0.00 0.00 0.00 3.06
3463 5986 6.173339 GTCCTTACACCTTTGATCTGAATGA 58.827 40.000 0.00 0.00 0.00 2.57
3464 5987 5.939883 TGTCCTTACACCTTTGATCTGAATG 59.060 40.000 0.00 0.00 0.00 2.67
3465 5988 6.126863 TGTCCTTACACCTTTGATCTGAAT 57.873 37.500 0.00 0.00 0.00 2.57
3466 5989 5.560722 TGTCCTTACACCTTTGATCTGAA 57.439 39.130 0.00 0.00 0.00 3.02
3467 5990 5.485353 AGATGTCCTTACACCTTTGATCTGA 59.515 40.000 0.00 0.00 38.78 3.27
3468 5991 5.738909 AGATGTCCTTACACCTTTGATCTG 58.261 41.667 0.00 0.00 38.78 2.90
3469 5992 6.440647 TGTAGATGTCCTTACACCTTTGATCT 59.559 38.462 0.00 0.00 38.78 2.75
3470 5993 6.640518 TGTAGATGTCCTTACACCTTTGATC 58.359 40.000 0.00 0.00 38.78 2.92
3471 5994 6.620877 TGTAGATGTCCTTACACCTTTGAT 57.379 37.500 0.00 0.00 38.78 2.57
3472 5995 6.228258 GTTGTAGATGTCCTTACACCTTTGA 58.772 40.000 0.00 0.00 38.78 2.69
3473 5996 5.120208 CGTTGTAGATGTCCTTACACCTTTG 59.880 44.000 0.00 0.00 38.78 2.77
3474 5997 5.235516 CGTTGTAGATGTCCTTACACCTTT 58.764 41.667 0.00 0.00 38.78 3.11
3475 5998 4.817517 CGTTGTAGATGTCCTTACACCTT 58.182 43.478 0.00 0.00 38.78 3.50
3476 5999 3.368116 GCGTTGTAGATGTCCTTACACCT 60.368 47.826 0.00 0.00 38.78 4.00
3477 6000 2.928116 GCGTTGTAGATGTCCTTACACC 59.072 50.000 0.00 0.00 38.78 4.16
3478 6001 2.928116 GGCGTTGTAGATGTCCTTACAC 59.072 50.000 0.00 0.00 38.78 2.90
3479 6002 2.093869 GGGCGTTGTAGATGTCCTTACA 60.094 50.000 0.00 0.00 36.05 2.41
3480 6003 2.093869 TGGGCGTTGTAGATGTCCTTAC 60.094 50.000 0.00 0.00 39.90 2.34
3481 6004 2.181125 TGGGCGTTGTAGATGTCCTTA 58.819 47.619 0.00 0.00 39.90 2.69
3482 6005 0.981183 TGGGCGTTGTAGATGTCCTT 59.019 50.000 0.00 0.00 39.90 3.36
3483 6006 0.981183 TTGGGCGTTGTAGATGTCCT 59.019 50.000 0.00 0.00 39.90 3.85
3484 6007 1.084289 GTTGGGCGTTGTAGATGTCC 58.916 55.000 0.00 0.00 39.63 4.02
3485 6008 1.084289 GGTTGGGCGTTGTAGATGTC 58.916 55.000 0.00 0.00 0.00 3.06
3486 6009 0.322187 GGGTTGGGCGTTGTAGATGT 60.322 55.000 0.00 0.00 0.00 3.06
3487 6010 0.035439 AGGGTTGGGCGTTGTAGATG 60.035 55.000 0.00 0.00 0.00 2.90
3488 6011 0.696501 AAGGGTTGGGCGTTGTAGAT 59.303 50.000 0.00 0.00 0.00 1.98
3489 6012 1.350071 TAAGGGTTGGGCGTTGTAGA 58.650 50.000 0.00 0.00 0.00 2.59
3490 6013 2.188062 TTAAGGGTTGGGCGTTGTAG 57.812 50.000 0.00 0.00 0.00 2.74
3491 6014 2.653234 TTTAAGGGTTGGGCGTTGTA 57.347 45.000 0.00 0.00 0.00 2.41
3492 6015 3.516911 TTTAAGGGTTGGGCGTTGT 57.483 47.368 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.