Multiple sequence alignment - TraesCS5D01G161300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G161300 chr5D 100.000 2953 0 0 1 2953 251935588 251938540 0.000000e+00 5454.0
1 TraesCS5D01G161300 chr5D 81.522 276 47 3 2597 2869 478471107 478470833 1.070000e-54 224.0
2 TraesCS5D01G161300 chr5D 79.240 342 49 11 2360 2699 98725373 98725694 4.960000e-53 219.0
3 TraesCS5D01G161300 chr5D 95.122 41 2 0 2910 2950 98725639 98725679 6.830000e-07 65.8
4 TraesCS5D01G161300 chr5B 94.161 548 20 8 1 547 283988469 283989005 0.000000e+00 824.0
5 TraesCS5D01G161300 chr5B 84.918 736 57 19 1285 1982 283989790 283990509 0.000000e+00 695.0
6 TraesCS5D01G161300 chr5B 90.698 473 29 6 672 1141 283989268 283989728 1.500000e-172 616.0
7 TraesCS5D01G161300 chr5B 86.842 266 16 8 2032 2286 283997176 283997433 2.240000e-71 279.0
8 TraesCS5D01G161300 chr5B 80.435 230 37 5 2360 2587 335201301 335201078 5.060000e-38 169.0
9 TraesCS5D01G161300 chr5B 86.364 110 6 4 543 643 283989077 283989186 8.650000e-21 111.0
10 TraesCS5D01G161300 chr1B 93.957 513 24 4 1 510 657321878 657322386 0.000000e+00 769.0
11 TraesCS5D01G161300 chr1B 79.039 229 43 4 2639 2864 494592460 494592686 5.100000e-33 152.0
12 TraesCS5D01G161300 chr1B 94.624 93 5 0 1285 1377 657322816 657322908 8.530000e-31 145.0
13 TraesCS5D01G161300 chr1B 96.825 63 2 0 1727 1789 657323597 657323659 4.030000e-19 106.0
14 TraesCS5D01G161300 chr5A 90.070 574 38 12 1409 1964 334741053 334741625 0.000000e+00 726.0
15 TraesCS5D01G161300 chr5A 94.213 432 21 3 1 432 334740174 334740601 0.000000e+00 656.0
16 TraesCS5D01G161300 chr5A 90.722 291 19 4 859 1141 334740639 334740929 5.970000e-102 381.0
17 TraesCS5D01G161300 chr5A 83.815 173 23 5 2370 2540 386697627 386697458 3.050000e-35 159.0
18 TraesCS5D01G161300 chr5A 92.000 50 4 0 2904 2953 678669999 678669950 1.470000e-08 71.3
19 TraesCS5D01G161300 chr5A 91.667 48 4 0 2902 2949 601228859 601228906 1.900000e-07 67.6
20 TraesCS5D01G161300 chr5A 95.122 41 2 0 2913 2953 374475961 374475921 6.830000e-07 65.8
21 TraesCS5D01G161300 chr5A 92.683 41 3 0 2910 2950 334742296 334742336 3.180000e-05 60.2
22 TraesCS5D01G161300 chr1A 88.041 485 21 10 1 464 566602646 566603114 9.310000e-150 540.0
23 TraesCS5D01G161300 chr1A 85.567 97 8 1 547 643 566603148 566603238 2.420000e-16 97.1
24 TraesCS5D01G161300 chr4D 77.525 396 65 14 2421 2806 390609504 390609123 1.780000e-52 217.0
25 TraesCS5D01G161300 chr4D 80.925 173 28 4 2692 2861 58629358 58629528 6.640000e-27 132.0
26 TraesCS5D01G161300 chr2B 86.735 196 21 5 2379 2572 142450761 142450953 2.310000e-51 213.0
27 TraesCS5D01G161300 chr2B 97.727 44 1 0 2910 2953 142372654 142372611 3.160000e-10 76.8
28 TraesCS5D01G161300 chr6B 75.292 514 85 21 2365 2864 62222323 62222808 1.070000e-49 207.0
29 TraesCS5D01G161300 chr4A 76.903 381 70 12 2422 2797 72308706 72308339 1.790000e-47 200.0
30 TraesCS5D01G161300 chr4A 87.500 120 12 3 2393 2510 134070797 134070915 5.130000e-28 135.0
31 TraesCS5D01G161300 chr2A 83.568 213 31 4 2360 2569 16619709 16619920 2.320000e-46 196.0
32 TraesCS5D01G161300 chr2A 82.547 212 34 3 2360 2569 16605259 16605469 1.810000e-42 183.0
33 TraesCS5D01G161300 chr2A 84.167 120 18 1 2397 2515 62265140 62265021 6.690000e-22 115.0
34 TraesCS5D01G161300 chr2A 91.489 47 4 0 2904 2950 152020120 152020166 6.830000e-07 65.8
35 TraesCS5D01G161300 chr3A 80.556 252 45 4 2614 2863 12181907 12182156 1.080000e-44 191.0
36 TraesCS5D01G161300 chr3B 76.952 269 41 12 1 258 19878413 19878671 1.850000e-27 134.0
37 TraesCS5D01G161300 chr3B 79.592 147 28 2 2718 2863 724946794 724946939 1.450000e-18 104.0
38 TraesCS5D01G161300 chr1D 78.140 215 42 3 2639 2850 371064190 371064402 6.640000e-27 132.0
39 TraesCS5D01G161300 chr2D 83.453 139 22 1 2378 2515 61795917 61795779 8.590000e-26 128.0
40 TraesCS5D01G161300 chr7D 80.153 131 26 0 2614 2744 33783952 33784082 6.740000e-17 99.0
41 TraesCS5D01G161300 chr7D 95.455 44 2 0 2910 2953 63652412 63652455 1.470000e-08 71.3
42 TraesCS5D01G161300 chr6D 90.909 44 4 0 2910 2953 78346559 78346516 3.180000e-05 60.2
43 TraesCS5D01G161300 chrUn 100.000 31 0 0 1048 1078 88770634 88770604 1.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G161300 chr5D 251935588 251938540 2952 False 5454.00 5454 100.000000 1 2953 1 chr5D.!!$F1 2952
1 TraesCS5D01G161300 chr5B 283988469 283990509 2040 False 561.50 824 89.035250 1 1982 4 chr5B.!!$F2 1981
2 TraesCS5D01G161300 chr1B 657321878 657323659 1781 False 340.00 769 95.135333 1 1789 3 chr1B.!!$F2 1788
3 TraesCS5D01G161300 chr5A 334740174 334742336 2162 False 455.80 726 91.922000 1 2950 4 chr5A.!!$F2 2949
4 TraesCS5D01G161300 chr1A 566602646 566603238 592 False 318.55 540 86.804000 1 643 2 chr1A.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 1070 0.178973 TTCTGGACAGTGGGACTCGA 60.179 55.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2696 3560 0.034896 TCCCAAGAAGTTCACCGCTC 59.965 55.0 5.5 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.253603 GTAAAAAGATTGGCTGCAGCG 58.746 47.619 31.19 0.00 43.26 5.18
164 168 4.873768 AACAAAATGTTTCTTTTGGGCG 57.126 36.364 12.37 0.00 45.90 6.13
173 177 3.641437 TTCTTTTGGGCGACTGAATTG 57.359 42.857 0.00 0.00 0.00 2.32
175 179 2.955660 TCTTTTGGGCGACTGAATTGTT 59.044 40.909 0.00 0.00 0.00 2.83
176 180 2.791383 TTTGGGCGACTGAATTGTTG 57.209 45.000 0.00 0.00 0.00 3.33
198 204 8.997323 TGTTGCCTTATTCAAAAATAAACCATG 58.003 29.630 0.00 0.00 37.00 3.66
227 233 4.269183 TGTTCGCTGATGGATTAATTGGT 58.731 39.130 0.00 0.00 0.00 3.67
325 350 7.255590 CCAACTTGTGTGGATCTTAATTTCTGT 60.256 37.037 0.00 0.00 0.00 3.41
326 351 7.823745 ACTTGTGTGGATCTTAATTTCTGTT 57.176 32.000 0.00 0.00 0.00 3.16
494 538 2.045561 AGAGGATCGACGATGTCTGT 57.954 50.000 16.49 8.21 42.67 3.41
495 539 1.944024 AGAGGATCGACGATGTCTGTC 59.056 52.381 16.49 0.00 42.67 3.51
496 540 1.944024 GAGGATCGACGATGTCTGTCT 59.056 52.381 16.49 2.96 34.17 3.41
574 694 0.683973 CATCTATCTGCCGGAGCCTT 59.316 55.000 5.05 0.00 38.69 4.35
579 699 2.841442 ATCTGCCGGAGCCTTAATAC 57.159 50.000 5.05 0.00 38.69 1.89
599 719 2.298610 CATGAGAGCCAGCATGAATGT 58.701 47.619 0.00 0.00 43.43 2.71
622 751 7.817641 TGTTTGTGTTTGATGTGTAAGTAACA 58.182 30.769 0.00 0.00 35.06 2.41
645 774 8.394971 ACAGAATCTGATTATGTTTTGTGACA 57.605 30.769 21.38 0.00 41.49 3.58
646 775 8.849168 ACAGAATCTGATTATGTTTTGTGACAA 58.151 29.630 21.38 0.00 41.49 3.18
647 776 9.850628 CAGAATCTGATTATGTTTTGTGACAAT 57.149 29.630 15.08 0.00 32.44 2.71
731 925 9.035607 GTGATTATGCTTATATCTGATTACGGG 57.964 37.037 0.00 0.00 0.00 5.28
783 977 1.859841 TAGCAGGGAGTCAGGGACGA 61.860 60.000 0.00 0.00 37.67 4.20
786 980 3.827898 GGGAGTCAGGGACGAGCG 61.828 72.222 0.00 0.00 37.67 5.03
799 996 2.158959 CGAGCGCTCGTACCCAAAG 61.159 63.158 43.16 18.78 46.99 2.77
823 1020 0.846693 AAGAGTTCCTGGGCAGTGTT 59.153 50.000 0.00 0.00 0.00 3.32
836 1033 1.537990 GCAGTGTTCCGGCAAAACAAT 60.538 47.619 8.64 5.30 38.29 2.71
843 1040 4.806247 TGTTCCGGCAAAACAATACAAAAG 59.194 37.500 4.80 0.00 33.86 2.27
847 1044 6.106673 TCCGGCAAAACAATACAAAAGAAAA 58.893 32.000 0.00 0.00 0.00 2.29
873 1070 0.178973 TTCTGGACAGTGGGACTCGA 60.179 55.000 0.00 0.00 0.00 4.04
893 1090 7.930217 ACTCGATTTTCTTTCTTGATCAACAA 58.070 30.769 3.38 0.00 36.97 2.83
903 1100 3.557577 TTGATCAACAAGCATTCGTGG 57.442 42.857 3.38 0.00 34.20 4.94
908 1105 2.128853 AACAAGCATTCGTGGGTGCG 62.129 55.000 0.00 0.00 45.69 5.34
921 1118 2.666098 GGTGCGGCCTTCCTTCCTA 61.666 63.158 0.00 0.00 0.00 2.94
1108 1309 1.136147 GCATCCTTCAGCAGCAACG 59.864 57.895 0.00 0.00 0.00 4.10
1146 1352 5.221986 GGTACGTCCCCAAATATTAATCCCT 60.222 44.000 0.00 0.00 0.00 4.20
1148 1354 4.202535 ACGTCCCCAAATATTAATCCCTCC 60.203 45.833 0.00 0.00 0.00 4.30
1149 1355 4.202524 CGTCCCCAAATATTAATCCCTCCA 60.203 45.833 0.00 0.00 0.00 3.86
1150 1356 5.077564 GTCCCCAAATATTAATCCCTCCAC 58.922 45.833 0.00 0.00 0.00 4.02
1151 1357 4.734503 TCCCCAAATATTAATCCCTCCACA 59.265 41.667 0.00 0.00 0.00 4.17
1152 1358 4.832823 CCCCAAATATTAATCCCTCCACAC 59.167 45.833 0.00 0.00 0.00 3.82
1153 1359 5.400189 CCCCAAATATTAATCCCTCCACACT 60.400 44.000 0.00 0.00 0.00 3.55
1154 1360 6.183361 CCCCAAATATTAATCCCTCCACACTA 60.183 42.308 0.00 0.00 0.00 2.74
1155 1361 6.942576 CCCAAATATTAATCCCTCCACACTAG 59.057 42.308 0.00 0.00 0.00 2.57
1156 1362 7.421382 CCCAAATATTAATCCCTCCACACTAGT 60.421 40.741 0.00 0.00 0.00 2.57
1157 1363 7.445402 CCAAATATTAATCCCTCCACACTAGTG 59.555 40.741 21.44 21.44 45.47 2.74
1158 1364 7.691993 AATATTAATCCCTCCACACTAGTGT 57.308 36.000 22.95 22.95 44.39 3.55
1159 1365 5.615925 ATTAATCCCTCCACACTAGTGTC 57.384 43.478 25.63 0.00 44.39 3.67
1160 1366 2.623418 ATCCCTCCACACTAGTGTCA 57.377 50.000 25.63 13.99 44.39 3.58
1161 1367 2.391926 TCCCTCCACACTAGTGTCAA 57.608 50.000 25.63 15.00 44.39 3.18
1162 1368 2.684943 TCCCTCCACACTAGTGTCAAA 58.315 47.619 25.63 12.59 44.39 2.69
1163 1369 3.042682 TCCCTCCACACTAGTGTCAAAA 58.957 45.455 25.63 10.22 44.39 2.44
1164 1370 3.456644 TCCCTCCACACTAGTGTCAAAAA 59.543 43.478 25.63 7.40 44.39 1.94
1165 1371 3.564225 CCCTCCACACTAGTGTCAAAAAC 59.436 47.826 25.63 0.00 44.39 2.43
1166 1372 4.451900 CCTCCACACTAGTGTCAAAAACT 58.548 43.478 25.63 0.00 44.39 2.66
1167 1373 4.511826 CCTCCACACTAGTGTCAAAAACTC 59.488 45.833 25.63 0.00 44.39 3.01
1168 1374 5.353394 TCCACACTAGTGTCAAAAACTCT 57.647 39.130 25.63 0.00 44.39 3.24
1169 1375 5.116180 TCCACACTAGTGTCAAAAACTCTG 58.884 41.667 25.63 10.29 44.39 3.35
1170 1376 5.105106 TCCACACTAGTGTCAAAAACTCTGA 60.105 40.000 25.63 6.83 44.39 3.27
1171 1377 5.006746 CCACACTAGTGTCAAAAACTCTGAC 59.993 44.000 25.63 0.00 44.39 3.51
1172 1378 4.804139 ACACTAGTGTCAAAAACTCTGACG 59.196 41.667 22.95 0.00 45.10 4.35
1173 1379 4.209288 CACTAGTGTCAAAAACTCTGACGG 59.791 45.833 15.06 0.00 45.10 4.79
1174 1380 3.536956 AGTGTCAAAAACTCTGACGGA 57.463 42.857 0.00 0.00 45.10 4.69
1175 1381 3.458189 AGTGTCAAAAACTCTGACGGAG 58.542 45.455 9.88 9.88 45.10 4.63
1176 1382 2.544267 GTGTCAAAAACTCTGACGGAGG 59.456 50.000 15.76 0.00 45.10 4.30
1177 1383 2.143925 GTCAAAAACTCTGACGGAGGG 58.856 52.381 15.76 0.45 45.83 4.30
1178 1384 2.043992 TCAAAAACTCTGACGGAGGGA 58.956 47.619 15.76 2.67 45.83 4.20
1179 1385 2.037251 TCAAAAACTCTGACGGAGGGAG 59.963 50.000 15.76 1.46 45.83 4.30
1180 1386 1.718280 AAAACTCTGACGGAGGGAGT 58.282 50.000 15.76 0.00 45.83 3.85
1181 1387 2.599408 AAACTCTGACGGAGGGAGTA 57.401 50.000 15.76 0.00 45.83 2.59
1182 1388 2.131776 AACTCTGACGGAGGGAGTAG 57.868 55.000 15.76 0.00 45.83 2.57
1183 1389 0.394625 ACTCTGACGGAGGGAGTAGC 60.395 60.000 15.76 0.00 45.83 3.58
1184 1390 0.106918 CTCTGACGGAGGGAGTAGCT 60.107 60.000 3.07 0.00 38.35 3.32
1185 1391 0.394488 TCTGACGGAGGGAGTAGCTG 60.394 60.000 0.00 0.00 0.00 4.24
1186 1392 2.010582 CTGACGGAGGGAGTAGCTGC 62.011 65.000 0.00 0.00 0.00 5.25
1187 1393 3.127352 GACGGAGGGAGTAGCTGCG 62.127 68.421 0.00 0.00 37.91 5.18
1188 1394 3.141488 CGGAGGGAGTAGCTGCGT 61.141 66.667 0.00 0.00 0.00 5.24
1189 1395 2.496817 GGAGGGAGTAGCTGCGTG 59.503 66.667 0.00 0.00 0.00 5.34
1190 1396 2.202810 GAGGGAGTAGCTGCGTGC 60.203 66.667 0.00 0.00 43.29 5.34
1191 1397 2.997315 AGGGAGTAGCTGCGTGCA 60.997 61.111 0.00 0.00 45.94 4.57
1192 1398 2.187946 GGGAGTAGCTGCGTGCAT 59.812 61.111 0.00 0.00 45.94 3.96
1193 1399 1.450312 GGGAGTAGCTGCGTGCATT 60.450 57.895 0.00 0.00 45.94 3.56
1218 1424 1.070309 GCATCACCTCGAATTCGCATC 60.070 52.381 22.90 2.56 39.60 3.91
1219 1425 2.204237 CATCACCTCGAATTCGCATCA 58.796 47.619 22.90 4.87 39.60 3.07
1238 1444 3.454858 TCAGCTTTATCAAGGAGGAGGT 58.545 45.455 0.00 0.00 0.00 3.85
1239 1445 3.846588 TCAGCTTTATCAAGGAGGAGGTT 59.153 43.478 0.00 0.00 0.00 3.50
1263 1472 3.384789 TGAGATTAAGATGTAGGCGTGCT 59.615 43.478 0.00 0.00 0.00 4.40
1275 1484 2.906354 AGGCGTGCTCTAATTACCTTG 58.094 47.619 0.00 0.00 0.00 3.61
1302 1511 6.613755 TTTAAATTAAGATCTACGCCTGCC 57.386 37.500 0.00 0.00 0.00 4.85
1303 1512 2.841442 ATTAAGATCTACGCCTGCCC 57.159 50.000 0.00 0.00 0.00 5.36
1304 1513 1.789523 TTAAGATCTACGCCTGCCCT 58.210 50.000 0.00 0.00 0.00 5.19
1305 1514 2.670019 TAAGATCTACGCCTGCCCTA 57.330 50.000 0.00 0.00 0.00 3.53
1306 1515 1.789523 AAGATCTACGCCTGCCCTAA 58.210 50.000 0.00 0.00 0.00 2.69
1307 1516 2.016905 AGATCTACGCCTGCCCTAAT 57.983 50.000 0.00 0.00 0.00 1.73
1308 1517 2.330216 AGATCTACGCCTGCCCTAATT 58.670 47.619 0.00 0.00 0.00 1.40
1309 1518 3.507411 AGATCTACGCCTGCCCTAATTA 58.493 45.455 0.00 0.00 0.00 1.40
1310 1519 3.258622 AGATCTACGCCTGCCCTAATTAC 59.741 47.826 0.00 0.00 0.00 1.89
1311 1520 1.690352 TCTACGCCTGCCCTAATTACC 59.310 52.381 0.00 0.00 0.00 2.85
1312 1521 1.692519 CTACGCCTGCCCTAATTACCT 59.307 52.381 0.00 0.00 0.00 3.08
1313 1522 0.916809 ACGCCTGCCCTAATTACCTT 59.083 50.000 0.00 0.00 0.00 3.50
1380 1589 4.563184 CGCAGATCTCACAAGTTTACTACC 59.437 45.833 0.00 0.00 0.00 3.18
1389 1598 6.844254 TCACAAGTTTACTACCAACAAACAC 58.156 36.000 0.00 0.00 35.17 3.32
1396 1605 4.503741 ACTACCAACAAACACATCATGC 57.496 40.909 0.00 0.00 0.00 4.06
1405 1614 5.636837 ACAAACACATCATGCGTAATTACC 58.363 37.500 10.01 3.92 0.00 2.85
1408 1620 4.513442 ACACATCATGCGTAATTACCAGT 58.487 39.130 10.01 1.69 0.00 4.00
1428 2137 5.423717 CAGTACTAATCTTATGCGCGTTTG 58.576 41.667 7.78 0.74 0.00 2.93
1430 2139 4.258935 ACTAATCTTATGCGCGTTTGTG 57.741 40.909 7.78 0.00 0.00 3.33
1460 2172 3.190874 GGACTAATCTTCTGCACCTTCG 58.809 50.000 0.00 0.00 0.00 3.79
1465 2177 2.839486 TCTTCTGCACCTTCGTTGAT 57.161 45.000 0.00 0.00 0.00 2.57
1470 2182 3.064207 TCTGCACCTTCGTTGATTACAC 58.936 45.455 0.00 0.00 0.00 2.90
1472 2184 3.407698 TGCACCTTCGTTGATTACACAT 58.592 40.909 0.00 0.00 0.00 3.21
1503 2216 7.471721 CATCGAATTTAATTTGTCAGTGCCTA 58.528 34.615 4.99 0.00 0.00 3.93
1531 2244 0.664466 TGCAGTTCGAGAAGCGTCAG 60.664 55.000 1.61 0.00 41.80 3.51
1537 2250 1.025113 TCGAGAAGCGTCAGGTCGAT 61.025 55.000 8.07 0.00 41.80 3.59
1616 2329 4.329462 AAGCTCATCGATTAACCTCCTC 57.671 45.455 0.00 0.00 0.00 3.71
1617 2330 3.300388 AGCTCATCGATTAACCTCCTCA 58.700 45.455 0.00 0.00 0.00 3.86
1618 2331 3.068873 AGCTCATCGATTAACCTCCTCAC 59.931 47.826 0.00 0.00 0.00 3.51
1619 2332 3.181475 GCTCATCGATTAACCTCCTCACA 60.181 47.826 0.00 0.00 0.00 3.58
1620 2333 4.615949 CTCATCGATTAACCTCCTCACAG 58.384 47.826 0.00 0.00 0.00 3.66
1621 2334 4.278310 TCATCGATTAACCTCCTCACAGA 58.722 43.478 0.00 0.00 0.00 3.41
1626 2341 3.936372 TTAACCTCCTCACAGAACTCG 57.064 47.619 0.00 0.00 0.00 4.18
1640 2367 8.068893 TCACAGAACTCGTTAATCAAGTAAAC 57.931 34.615 0.00 0.00 0.00 2.01
1660 2388 0.318120 AAAACTTGCCGGCATCTTGG 59.682 50.000 33.25 19.39 0.00 3.61
1936 2686 4.798682 GGGCTTCGGAGGAGGGGA 62.799 72.222 0.00 0.00 0.00 4.81
1982 2732 1.064979 GGGTACCGTGTCCCATGATTT 60.065 52.381 5.65 0.00 40.86 2.17
1983 2733 2.285977 GGTACCGTGTCCCATGATTTC 58.714 52.381 0.00 0.00 0.00 2.17
1984 2734 2.093128 GGTACCGTGTCCCATGATTTCT 60.093 50.000 0.00 0.00 0.00 2.52
1985 2735 2.879103 ACCGTGTCCCATGATTTCTT 57.121 45.000 0.00 0.00 0.00 2.52
1986 2736 3.992943 ACCGTGTCCCATGATTTCTTA 57.007 42.857 0.00 0.00 0.00 2.10
1996 2746 7.154656 GTCCCATGATTTCTTAGCAAGTTTTT 58.845 34.615 0.00 0.00 0.00 1.94
2006 2756 7.556733 TCTTAGCAAGTTTTTCTCCGTTTAA 57.443 32.000 0.00 0.00 0.00 1.52
2008 2758 8.626526 TCTTAGCAAGTTTTTCTCCGTTTAATT 58.373 29.630 0.00 0.00 0.00 1.40
2009 2759 8.791355 TTAGCAAGTTTTTCTCCGTTTAATTC 57.209 30.769 0.00 0.00 0.00 2.17
2010 2760 6.213677 AGCAAGTTTTTCTCCGTTTAATTCC 58.786 36.000 0.00 0.00 0.00 3.01
2012 2762 7.229907 AGCAAGTTTTTCTCCGTTTAATTCCTA 59.770 33.333 0.00 0.00 0.00 2.94
2016 2775 6.710692 TTTTCTCCGTTTAATTCCTACGAC 57.289 37.500 8.07 0.00 37.47 4.34
2051 2855 1.132500 ACCGAATGATTCCCCTCCTC 58.868 55.000 0.00 0.00 0.00 3.71
2052 2856 0.034059 CCGAATGATTCCCCTCCTCG 59.966 60.000 0.00 0.00 0.00 4.63
2053 2857 0.753262 CGAATGATTCCCCTCCTCGT 59.247 55.000 0.00 0.00 0.00 4.18
2054 2858 1.961394 CGAATGATTCCCCTCCTCGTA 59.039 52.381 0.00 0.00 0.00 3.43
2055 2859 2.288273 CGAATGATTCCCCTCCTCGTAC 60.288 54.545 0.00 0.00 0.00 3.67
2056 2860 2.471815 ATGATTCCCCTCCTCGTACA 57.528 50.000 0.00 0.00 0.00 2.90
2057 2861 2.471815 TGATTCCCCTCCTCGTACAT 57.528 50.000 0.00 0.00 0.00 2.29
2058 2862 2.759355 TGATTCCCCTCCTCGTACATT 58.241 47.619 0.00 0.00 0.00 2.71
2059 2863 2.434336 TGATTCCCCTCCTCGTACATTG 59.566 50.000 0.00 0.00 0.00 2.82
2060 2864 0.539986 TTCCCCTCCTCGTACATTGC 59.460 55.000 0.00 0.00 0.00 3.56
2061 2865 0.325296 TCCCCTCCTCGTACATTGCT 60.325 55.000 0.00 0.00 0.00 3.91
2062 2866 0.541863 CCCCTCCTCGTACATTGCTT 59.458 55.000 0.00 0.00 0.00 3.91
2063 2867 1.065418 CCCCTCCTCGTACATTGCTTT 60.065 52.381 0.00 0.00 0.00 3.51
2064 2868 2.009774 CCCTCCTCGTACATTGCTTTG 58.990 52.381 0.00 0.00 0.00 2.77
2065 2869 2.354704 CCCTCCTCGTACATTGCTTTGA 60.355 50.000 0.00 0.00 0.00 2.69
2066 2870 3.535561 CCTCCTCGTACATTGCTTTGAT 58.464 45.455 0.00 0.00 0.00 2.57
2067 2871 4.442893 CCCTCCTCGTACATTGCTTTGATA 60.443 45.833 0.00 0.00 0.00 2.15
2068 2872 5.300752 CCTCCTCGTACATTGCTTTGATAT 58.699 41.667 0.00 0.00 0.00 1.63
2069 2873 5.406780 CCTCCTCGTACATTGCTTTGATATC 59.593 44.000 0.00 0.00 0.00 1.63
2070 2874 6.161855 TCCTCGTACATTGCTTTGATATCT 57.838 37.500 3.98 0.00 0.00 1.98
2097 2901 8.691797 TGTGCTTAGATTTTAAACCTTCACTTT 58.308 29.630 0.00 0.00 0.00 2.66
2116 2920 5.007724 CACTTTAAGAAGGGATCATTACGCC 59.992 44.000 0.00 0.00 38.64 5.68
2128 2932 2.942376 TCATTACGCCTGCATCGATTTT 59.058 40.909 14.25 0.00 0.00 1.82
2129 2933 2.823196 TTACGCCTGCATCGATTTTG 57.177 45.000 14.25 0.00 0.00 2.44
2134 2938 1.677576 GCCTGCATCGATTTTGATGGA 59.322 47.619 9.33 5.99 44.72 3.41
2135 2939 2.295349 GCCTGCATCGATTTTGATGGAT 59.705 45.455 9.33 0.00 44.24 3.41
2136 2940 3.611057 GCCTGCATCGATTTTGATGGATC 60.611 47.826 9.33 0.00 44.24 3.36
2137 2941 3.057736 CCTGCATCGATTTTGATGGATCC 60.058 47.826 4.20 4.20 44.24 3.36
2138 2942 3.553904 TGCATCGATTTTGATGGATCCA 58.446 40.909 18.88 18.88 44.72 3.41
2139 2943 3.566742 TGCATCGATTTTGATGGATCCAG 59.433 43.478 21.33 3.70 44.72 3.86
2140 2944 3.611057 GCATCGATTTTGATGGATCCAGC 60.611 47.826 23.33 23.33 44.72 4.85
2141 2945 2.575532 TCGATTTTGATGGATCCAGCC 58.424 47.619 26.62 17.34 0.00 4.85
2142 2946 2.092484 TCGATTTTGATGGATCCAGCCA 60.092 45.455 26.62 19.66 43.23 4.75
2143 2947 2.689471 CGATTTTGATGGATCCAGCCAA 59.311 45.455 26.62 23.78 42.16 4.52
2144 2948 3.130869 CGATTTTGATGGATCCAGCCAAA 59.869 43.478 25.95 25.95 42.16 3.28
2145 2949 4.690122 GATTTTGATGGATCCAGCCAAAG 58.310 43.478 27.05 0.00 42.16 2.77
2146 2950 3.454719 TTTGATGGATCCAGCCAAAGA 57.545 42.857 27.73 15.76 42.16 2.52
2147 2951 3.675348 TTGATGGATCCAGCCAAAGAT 57.325 42.857 26.62 3.47 42.16 2.40
2148 2952 3.219176 TGATGGATCCAGCCAAAGATC 57.781 47.619 26.62 13.52 42.16 2.75
2149 2953 2.510800 TGATGGATCCAGCCAAAGATCA 59.489 45.455 26.62 15.96 42.16 2.92
2150 2954 3.053470 TGATGGATCCAGCCAAAGATCAA 60.053 43.478 26.62 1.96 42.16 2.57
2151 2955 3.454719 TGGATCCAGCCAAAGATCAAA 57.545 42.857 11.44 0.00 40.59 2.69
2152 2956 3.091545 TGGATCCAGCCAAAGATCAAAC 58.908 45.455 11.44 0.00 40.59 2.93
2153 2957 3.245371 TGGATCCAGCCAAAGATCAAACT 60.245 43.478 11.44 0.00 40.59 2.66
2154 2958 3.379688 GGATCCAGCCAAAGATCAAACTC 59.620 47.826 6.95 0.00 40.59 3.01
2155 2959 2.426522 TCCAGCCAAAGATCAAACTCG 58.573 47.619 0.00 0.00 0.00 4.18
2156 2960 2.038426 TCCAGCCAAAGATCAAACTCGA 59.962 45.455 0.00 0.00 0.00 4.04
2157 2961 2.417933 CCAGCCAAAGATCAAACTCGAG 59.582 50.000 11.84 11.84 0.00 4.04
2158 2962 3.329386 CAGCCAAAGATCAAACTCGAGA 58.671 45.455 21.68 0.00 0.00 4.04
2159 2963 3.937706 CAGCCAAAGATCAAACTCGAGAT 59.062 43.478 21.68 3.75 0.00 2.75
2160 2964 4.394300 CAGCCAAAGATCAAACTCGAGATT 59.606 41.667 21.68 11.42 0.00 2.40
2161 2965 5.006386 AGCCAAAGATCAAACTCGAGATTT 58.994 37.500 21.68 12.81 0.00 2.17
2162 2966 5.474876 AGCCAAAGATCAAACTCGAGATTTT 59.525 36.000 21.68 7.36 0.00 1.82
2178 2982 9.118236 CTCGAGATTTTAATCCTTGTTTTTGTC 57.882 33.333 6.58 0.00 36.04 3.18
2180 2984 9.118236 CGAGATTTTAATCCTTGTTTTTGTCTC 57.882 33.333 0.00 0.00 36.04 3.36
2183 2987 9.196552 GATTTTAATCCTTGTTTTTGTCTCTGG 57.803 33.333 0.00 0.00 0.00 3.86
2184 2988 7.654022 TTTAATCCTTGTTTTTGTCTCTGGT 57.346 32.000 0.00 0.00 0.00 4.00
2185 2989 5.774498 AATCCTTGTTTTTGTCTCTGGTC 57.226 39.130 0.00 0.00 0.00 4.02
2186 2990 4.503714 TCCTTGTTTTTGTCTCTGGTCT 57.496 40.909 0.00 0.00 0.00 3.85
2187 2991 4.451900 TCCTTGTTTTTGTCTCTGGTCTC 58.548 43.478 0.00 0.00 0.00 3.36
2203 3010 3.060602 GGTCTCTCTGTTCCTTGTTTCG 58.939 50.000 0.00 0.00 0.00 3.46
2205 3012 3.491267 GTCTCTCTGTTCCTTGTTTCGTG 59.509 47.826 0.00 0.00 0.00 4.35
2207 3014 1.939934 CTCTGTTCCTTGTTTCGTGCA 59.060 47.619 0.00 0.00 0.00 4.57
2213 3020 0.385390 CCTTGTTTCGTGCAAGCCTT 59.615 50.000 0.00 0.00 41.27 4.35
2221 3028 0.512952 CGTGCAAGCCTTGTGTAGAC 59.487 55.000 6.28 0.00 0.00 2.59
2222 3029 1.593196 GTGCAAGCCTTGTGTAGACA 58.407 50.000 6.28 0.00 0.00 3.41
2276 3087 3.508840 CGCCCGAACCCAATGCTC 61.509 66.667 0.00 0.00 0.00 4.26
2280 3091 0.251916 CCCGAACCCAATGCTCTGTA 59.748 55.000 0.00 0.00 0.00 2.74
2281 3092 1.134098 CCCGAACCCAATGCTCTGTAT 60.134 52.381 0.00 0.00 0.00 2.29
2282 3093 2.643551 CCGAACCCAATGCTCTGTATT 58.356 47.619 0.00 0.00 0.00 1.89
2283 3094 3.016736 CCGAACCCAATGCTCTGTATTT 58.983 45.455 0.00 0.00 0.00 1.40
2284 3095 3.443681 CCGAACCCAATGCTCTGTATTTT 59.556 43.478 0.00 0.00 0.00 1.82
2285 3096 4.082245 CCGAACCCAATGCTCTGTATTTTT 60.082 41.667 0.00 0.00 0.00 1.94
2308 3119 9.804547 TTTTTATTTTATTTTGCGACTGAATGC 57.195 25.926 0.00 0.00 0.00 3.56
2309 3120 8.755696 TTTATTTTATTTTGCGACTGAATGCT 57.244 26.923 0.00 0.00 0.00 3.79
2310 3121 6.875926 ATTTTATTTTGCGACTGAATGCTC 57.124 33.333 0.00 0.00 0.00 4.26
2311 3122 5.627499 TTTATTTTGCGACTGAATGCTCT 57.373 34.783 0.00 0.00 0.00 4.09
2312 3123 2.975410 TTTTGCGACTGAATGCTCTG 57.025 45.000 0.00 0.00 0.00 3.35
2313 3124 1.882912 TTTGCGACTGAATGCTCTGT 58.117 45.000 0.00 0.00 36.52 3.41
2314 3125 2.741759 TTGCGACTGAATGCTCTGTA 57.258 45.000 0.00 0.00 34.19 2.74
2331 3142 6.376299 TGCTCTGTATTTTTGCTGATGAGATT 59.624 34.615 0.00 0.00 0.00 2.40
2333 3144 8.400947 GCTCTGTATTTTTGCTGATGAGATTAA 58.599 33.333 0.00 0.00 0.00 1.40
2335 3146 8.896744 TCTGTATTTTTGCTGATGAGATTAAGG 58.103 33.333 0.00 0.00 0.00 2.69
2342 3153 4.347292 TGCTGATGAGATTAAGGCATCTCT 59.653 41.667 12.78 0.00 46.64 3.10
2343 3154 4.691685 GCTGATGAGATTAAGGCATCTCTG 59.308 45.833 12.78 4.42 46.64 3.35
2347 3158 3.056304 GAGATTAAGGCATCTCTGACGC 58.944 50.000 6.16 0.00 44.15 5.19
2353 3164 2.105128 CATCTCTGACGCCGACCC 59.895 66.667 0.00 0.00 0.00 4.46
2372 3235 2.126914 CGCAAACCGGTCATTCAAAA 57.873 45.000 8.04 0.00 0.00 2.44
2374 3237 2.542824 CGCAAACCGGTCATTCAAAACT 60.543 45.455 8.04 0.00 0.00 2.66
2379 3242 1.396996 CCGGTCATTCAAAACTAGCCG 59.603 52.381 0.00 0.00 37.92 5.52
2387 3250 4.614555 TTCAAAACTAGCCGCATATGTG 57.385 40.909 9.39 9.39 0.00 3.21
2401 3264 0.804364 TATGTGCAGCTGCTTTTCGG 59.196 50.000 36.61 0.00 42.66 4.30
2454 3317 9.755804 TTGATGCATATTTAAACAACTTGAACA 57.244 25.926 0.00 0.00 0.00 3.18
2455 3318 9.926158 TGATGCATATTTAAACAACTTGAACAT 57.074 25.926 0.00 0.00 0.00 2.71
2500 3364 5.927954 TTACATAACACTGGACGGTTTTC 57.072 39.130 0.00 0.00 0.00 2.29
2516 3380 8.112449 GGACGGTTTTCGACATATTTAAACTAG 58.888 37.037 6.59 0.00 42.43 2.57
2518 3382 8.650714 ACGGTTTTCGACATATTTAAACTAGAC 58.349 33.333 0.00 0.00 42.43 2.59
2519 3383 8.866956 CGGTTTTCGACATATTTAAACTAGACT 58.133 33.333 0.00 0.00 42.43 3.24
2545 3409 6.098552 AGACTCTAAACCTAGCCTAATTGACC 59.901 42.308 0.00 0.00 0.00 4.02
2546 3410 5.163437 ACTCTAAACCTAGCCTAATTGACCG 60.163 44.000 0.00 0.00 0.00 4.79
2547 3411 2.327200 AACCTAGCCTAATTGACCGC 57.673 50.000 0.00 0.00 0.00 5.68
2552 3416 2.124901 CCTAATTGACCGCCGGCA 60.125 61.111 28.98 6.55 0.00 5.69
2571 3435 3.712907 CCGTTCCCCATGTCCGGT 61.713 66.667 0.00 0.00 34.10 5.28
2578 3442 2.452064 CCCATGTCCGGTAGGCCAT 61.452 63.158 5.01 0.00 36.37 4.40
2581 3445 2.136791 ATGTCCGGTAGGCCATGAG 58.863 57.895 5.01 0.00 34.36 2.90
2582 3446 2.044806 ATGTCCGGTAGGCCATGAGC 62.045 60.000 5.01 0.00 34.36 4.26
2592 3456 3.411517 CCATGAGCCCCGGGAACT 61.412 66.667 26.32 19.92 0.00 3.01
2593 3457 2.070039 CCATGAGCCCCGGGAACTA 61.070 63.158 26.32 5.92 0.00 2.24
2594 3458 1.146263 CATGAGCCCCGGGAACTAC 59.854 63.158 26.32 13.03 0.00 2.73
2595 3459 2.070650 ATGAGCCCCGGGAACTACC 61.071 63.158 26.32 8.62 38.08 3.18
2603 3467 3.316029 GGGAACTACCGGCCATGA 58.684 61.111 0.00 0.00 40.11 3.07
2604 3468 1.146263 GGGAACTACCGGCCATGAG 59.854 63.158 0.00 0.00 40.11 2.90
2605 3469 1.523938 GGAACTACCGGCCATGAGC 60.524 63.158 0.00 0.00 42.60 4.26
2631 3495 2.046892 GAAGCTCTGCCTCCGCAA 60.047 61.111 0.00 0.00 46.66 4.85
2633 3497 2.794820 GAAGCTCTGCCTCCGCAACT 62.795 60.000 0.00 0.00 46.66 3.16
2637 3501 2.670934 CTGCCTCCGCAACTTGCT 60.671 61.111 11.93 0.00 46.66 3.91
2639 3503 1.364626 CTGCCTCCGCAACTTGCTAG 61.365 60.000 11.93 8.68 46.66 3.42
2640 3504 2.754995 GCCTCCGCAACTTGCTAGC 61.755 63.158 8.10 8.10 42.25 3.42
2645 3509 4.201951 GCAACTTGCTAGCGGCTA 57.798 55.556 10.77 9.71 40.96 3.93
2646 3510 2.466867 GCAACTTGCTAGCGGCTAA 58.533 52.632 11.39 0.00 40.96 3.09
2647 3511 1.017387 GCAACTTGCTAGCGGCTAAT 58.983 50.000 11.39 0.00 40.96 1.73
2648 3512 1.003438 GCAACTTGCTAGCGGCTAATC 60.003 52.381 11.39 6.58 40.96 1.75
2649 3513 1.258982 CAACTTGCTAGCGGCTAATCG 59.741 52.381 11.39 0.76 42.39 3.34
2650 3514 0.249489 ACTTGCTAGCGGCTAATCGG 60.249 55.000 11.39 0.39 42.39 4.18
2651 3515 1.560860 CTTGCTAGCGGCTAATCGGC 61.561 60.000 11.39 11.13 42.39 5.54
2666 3530 4.223800 GGCCAACGATGATGAGCA 57.776 55.556 0.00 0.00 0.00 4.26
2667 3531 1.723870 GGCCAACGATGATGAGCAC 59.276 57.895 0.00 0.00 0.00 4.40
2668 3532 1.349627 GCCAACGATGATGAGCACG 59.650 57.895 0.00 0.00 0.00 5.34
2669 3533 1.349627 CCAACGATGATGAGCACGC 59.650 57.895 0.00 0.00 0.00 5.34
2670 3534 1.349627 CAACGATGATGAGCACGCC 59.650 57.895 0.00 0.00 0.00 5.68
2671 3535 1.079197 AACGATGATGAGCACGCCA 60.079 52.632 0.00 0.00 0.00 5.69
2672 3536 0.673333 AACGATGATGAGCACGCCAA 60.673 50.000 0.00 0.00 0.00 4.52
2673 3537 1.086067 ACGATGATGAGCACGCCAAG 61.086 55.000 0.00 0.00 0.00 3.61
2674 3538 1.354506 GATGATGAGCACGCCAAGC 59.645 57.895 0.00 0.00 0.00 4.01
2675 3539 1.077930 ATGATGAGCACGCCAAGCT 60.078 52.632 0.00 0.00 46.82 3.74
2676 3540 0.679002 ATGATGAGCACGCCAAGCTT 60.679 50.000 0.00 0.00 43.58 3.74
2677 3541 1.136147 GATGAGCACGCCAAGCTTG 59.864 57.895 19.93 19.93 43.58 4.01
2686 3550 2.564975 CCAAGCTTGGCTTCAGCG 59.435 61.111 31.70 6.62 46.77 5.18
2687 3551 2.564975 CAAGCTTGGCTTCAGCGG 59.435 61.111 19.14 0.00 46.77 5.52
2688 3552 2.674380 AAGCTTGGCTTCAGCGGG 60.674 61.111 0.00 0.00 46.77 6.13
2689 3553 3.196207 AAGCTTGGCTTCAGCGGGA 62.196 57.895 0.00 0.00 46.77 5.14
2690 3554 3.130160 GCTTGGCTTCAGCGGGAG 61.130 66.667 0.00 0.00 43.26 4.30
2702 3566 4.436998 CGGGAGCGAAAGAGCGGT 62.437 66.667 0.00 0.00 45.54 5.68
2703 3567 2.815647 GGGAGCGAAAGAGCGGTG 60.816 66.667 0.00 0.00 42.62 4.94
2704 3568 2.261671 GGAGCGAAAGAGCGGTGA 59.738 61.111 0.00 0.00 42.62 4.02
2705 3569 1.374252 GGAGCGAAAGAGCGGTGAA 60.374 57.895 0.00 0.00 42.62 3.18
2706 3570 1.627550 GGAGCGAAAGAGCGGTGAAC 61.628 60.000 0.00 0.00 42.62 3.18
2707 3571 0.667792 GAGCGAAAGAGCGGTGAACT 60.668 55.000 0.00 0.00 42.62 3.01
2708 3572 0.249911 AGCGAAAGAGCGGTGAACTT 60.250 50.000 0.00 0.00 40.85 2.66
2709 3573 0.164002 GCGAAAGAGCGGTGAACTTC 59.836 55.000 0.00 0.00 0.00 3.01
2710 3574 1.784525 CGAAAGAGCGGTGAACTTCT 58.215 50.000 0.00 0.00 0.00 2.85
2711 3575 2.135933 CGAAAGAGCGGTGAACTTCTT 58.864 47.619 0.00 0.00 0.00 2.52
2712 3576 2.096713 CGAAAGAGCGGTGAACTTCTTG 60.097 50.000 0.00 0.00 0.00 3.02
2713 3577 1.884235 AAGAGCGGTGAACTTCTTGG 58.116 50.000 0.00 0.00 0.00 3.61
2714 3578 0.035458 AGAGCGGTGAACTTCTTGGG 59.965 55.000 0.00 0.00 0.00 4.12
2715 3579 0.034896 GAGCGGTGAACTTCTTGGGA 59.965 55.000 0.00 0.00 0.00 4.37
2716 3580 0.250338 AGCGGTGAACTTCTTGGGAC 60.250 55.000 0.00 0.00 0.00 4.46
2717 3581 1.235281 GCGGTGAACTTCTTGGGACC 61.235 60.000 0.00 0.00 0.00 4.46
2718 3582 0.605589 CGGTGAACTTCTTGGGACCC 60.606 60.000 2.45 2.45 0.00 4.46
2719 3583 0.605589 GGTGAACTTCTTGGGACCCG 60.606 60.000 5.91 0.00 0.00 5.28
2720 3584 0.395312 GTGAACTTCTTGGGACCCGA 59.605 55.000 5.91 2.38 0.00 5.14
2721 3585 0.685097 TGAACTTCTTGGGACCCGAG 59.315 55.000 20.90 20.90 36.39 4.63
2722 3586 0.673956 GAACTTCTTGGGACCCGAGC 60.674 60.000 21.99 4.83 35.08 5.03
2723 3587 2.125512 CTTCTTGGGACCCGAGCG 60.126 66.667 21.99 11.89 35.08 5.03
2724 3588 4.388499 TTCTTGGGACCCGAGCGC 62.388 66.667 21.99 0.00 35.08 5.92
2742 3606 4.899239 CGGCGACCTCCCATGCTC 62.899 72.222 0.00 0.00 0.00 4.26
2743 3607 3.474570 GGCGACCTCCCATGCTCT 61.475 66.667 0.00 0.00 0.00 4.09
2744 3608 2.586792 GCGACCTCCCATGCTCTT 59.413 61.111 0.00 0.00 0.00 2.85
2745 3609 1.817099 GCGACCTCCCATGCTCTTG 60.817 63.158 0.00 0.00 0.00 3.02
2746 3610 1.599047 CGACCTCCCATGCTCTTGT 59.401 57.895 0.00 0.00 0.00 3.16
2747 3611 0.460987 CGACCTCCCATGCTCTTGTC 60.461 60.000 0.00 0.00 0.00 3.18
2748 3612 0.107459 GACCTCCCATGCTCTTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
2749 3613 0.548682 ACCTCCCATGCTCTTGTCCT 60.549 55.000 0.00 0.00 0.00 3.85
2750 3614 0.179936 CCTCCCATGCTCTTGTCCTC 59.820 60.000 0.00 0.00 0.00 3.71
2751 3615 0.179936 CTCCCATGCTCTTGTCCTCC 59.820 60.000 0.00 0.00 0.00 4.30
2752 3616 0.252881 TCCCATGCTCTTGTCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
2753 3617 0.179936 CCCATGCTCTTGTCCTCCTC 59.820 60.000 0.00 0.00 0.00 3.71
2754 3618 0.179089 CCATGCTCTTGTCCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
2755 3619 0.809241 CATGCTCTTGTCCTCCTCGC 60.809 60.000 0.00 0.00 0.00 5.03
2756 3620 0.975040 ATGCTCTTGTCCTCCTCGCT 60.975 55.000 0.00 0.00 0.00 4.93
2757 3621 1.153667 GCTCTTGTCCTCCTCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
2758 3622 1.153667 CTCTTGTCCTCCTCGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
2759 3623 2.125350 CTTGTCCTCCTCGCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
2760 3624 3.997064 CTTGTCCTCCTCGCTGCCG 62.997 68.421 0.00 0.00 0.00 5.69
2779 3643 4.619227 CGGCACCCTTGGACGTGT 62.619 66.667 0.00 0.00 32.40 4.49
2780 3644 2.668550 GGCACCCTTGGACGTGTC 60.669 66.667 0.00 0.00 32.40 3.67
2789 3653 3.474806 GGACGTGTCCGCTTCATG 58.525 61.111 2.78 0.00 40.36 3.07
2790 3654 2.100631 GGACGTGTCCGCTTCATGG 61.101 63.158 2.78 0.00 40.36 3.66
2791 3655 1.374252 GACGTGTCCGCTTCATGGT 60.374 57.895 0.00 0.00 37.70 3.55
2792 3656 1.352156 GACGTGTCCGCTTCATGGTC 61.352 60.000 0.00 0.00 37.70 4.02
2793 3657 1.374125 CGTGTCCGCTTCATGGTCA 60.374 57.895 0.00 0.00 0.00 4.02
2794 3658 0.740868 CGTGTCCGCTTCATGGTCAT 60.741 55.000 0.00 0.00 0.00 3.06
2795 3659 0.729116 GTGTCCGCTTCATGGTCATG 59.271 55.000 4.67 4.67 40.09 3.07
2796 3660 0.392863 TGTCCGCTTCATGGTCATGG 60.393 55.000 10.61 0.00 39.24 3.66
2797 3661 1.451927 TCCGCTTCATGGTCATGGC 60.452 57.895 10.61 6.61 39.24 4.40
2798 3662 1.750018 CCGCTTCATGGTCATGGCA 60.750 57.895 10.61 0.00 39.24 4.92
2799 3663 1.721664 CCGCTTCATGGTCATGGCAG 61.722 60.000 10.61 8.37 39.24 4.85
2800 3664 1.436336 GCTTCATGGTCATGGCAGC 59.564 57.895 15.27 15.27 39.24 5.25
2801 3665 1.317431 GCTTCATGGTCATGGCAGCA 61.317 55.000 20.89 0.00 41.32 4.41
2802 3666 0.738975 CTTCATGGTCATGGCAGCAG 59.261 55.000 10.61 0.00 39.24 4.24
2803 3667 0.681887 TTCATGGTCATGGCAGCAGG 60.682 55.000 10.61 0.00 39.24 4.85
2804 3668 2.441532 ATGGTCATGGCAGCAGGC 60.442 61.111 0.00 0.00 43.74 4.85
2838 3702 3.056458 TGGCAACATCGTCCTCGT 58.944 55.556 0.00 0.00 46.17 4.18
2839 3703 1.080093 TGGCAACATCGTCCTCGTC 60.080 57.895 0.00 0.00 46.17 4.20
2840 3704 1.810030 GGCAACATCGTCCTCGTCC 60.810 63.158 0.00 0.00 38.33 4.79
2841 3705 1.215647 GCAACATCGTCCTCGTCCT 59.784 57.895 0.00 0.00 38.33 3.85
2842 3706 0.802607 GCAACATCGTCCTCGTCCTC 60.803 60.000 0.00 0.00 38.33 3.71
2843 3707 0.523546 CAACATCGTCCTCGTCCTCG 60.524 60.000 0.00 0.00 38.33 4.63
2844 3708 2.024871 CATCGTCCTCGTCCTCGC 59.975 66.667 0.00 0.00 38.33 5.03
2845 3709 2.124653 ATCGTCCTCGTCCTCGCT 60.125 61.111 0.00 0.00 38.33 4.93
2846 3710 2.181521 ATCGTCCTCGTCCTCGCTC 61.182 63.158 0.00 0.00 38.33 5.03
2847 3711 2.596553 ATCGTCCTCGTCCTCGCTCT 62.597 60.000 0.00 0.00 38.33 4.09
2848 3712 2.400158 CGTCCTCGTCCTCGCTCTT 61.400 63.158 0.00 0.00 36.96 2.85
2849 3713 1.137825 GTCCTCGTCCTCGCTCTTG 59.862 63.158 0.00 0.00 36.96 3.02
2850 3714 1.303398 TCCTCGTCCTCGCTCTTGT 60.303 57.895 0.00 0.00 36.96 3.16
2851 3715 1.137825 CCTCGTCCTCGCTCTTGTC 59.862 63.158 0.00 0.00 36.96 3.18
2852 3716 1.226156 CTCGTCCTCGCTCTTGTCG 60.226 63.158 0.00 0.00 36.96 4.35
2853 3717 1.913451 CTCGTCCTCGCTCTTGTCGT 61.913 60.000 0.00 0.00 36.96 4.34
2854 3718 0.671472 TCGTCCTCGCTCTTGTCGTA 60.671 55.000 0.00 0.00 36.96 3.43
2855 3719 0.247735 CGTCCTCGCTCTTGTCGTAG 60.248 60.000 0.00 0.00 0.00 3.51
2856 3720 1.085091 GTCCTCGCTCTTGTCGTAGA 58.915 55.000 0.00 0.00 0.00 2.59
2871 3735 3.571571 TCGTAGACTTCATTTGTCGTGG 58.428 45.455 0.00 0.00 39.24 4.94
2872 3736 3.005050 TCGTAGACTTCATTTGTCGTGGT 59.995 43.478 0.00 0.00 39.24 4.16
2873 3737 3.364023 CGTAGACTTCATTTGTCGTGGTC 59.636 47.826 0.00 0.00 39.24 4.02
2874 3738 3.469008 AGACTTCATTTGTCGTGGTCA 57.531 42.857 0.00 0.00 39.24 4.02
2875 3739 4.008074 AGACTTCATTTGTCGTGGTCAT 57.992 40.909 0.00 0.00 39.24 3.06
2876 3740 3.748048 AGACTTCATTTGTCGTGGTCATG 59.252 43.478 0.00 0.00 39.24 3.07
2877 3741 2.813754 ACTTCATTTGTCGTGGTCATGG 59.186 45.455 0.00 0.00 0.00 3.66
2878 3742 1.164411 TCATTTGTCGTGGTCATGGC 58.836 50.000 0.00 0.00 0.00 4.40
2879 3743 0.179192 CATTTGTCGTGGTCATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
2880 3744 1.305219 ATTTGTCGTGGTCATGGCGG 61.305 55.000 0.00 0.00 0.00 6.13
2900 3764 3.948719 GGGGGTGAGTGTGGCGAA 61.949 66.667 0.00 0.00 0.00 4.70
2901 3765 2.358737 GGGGTGAGTGTGGCGAAG 60.359 66.667 0.00 0.00 0.00 3.79
2902 3766 2.426023 GGGTGAGTGTGGCGAAGT 59.574 61.111 0.00 0.00 0.00 3.01
2903 3767 1.668151 GGGTGAGTGTGGCGAAGTC 60.668 63.158 0.00 0.00 0.00 3.01
2904 3768 1.069090 GGTGAGTGTGGCGAAGTCA 59.931 57.895 0.00 0.00 43.93 3.41
2917 3781 1.789464 CGAAGTCAGCATCTAATCGGC 59.211 52.381 0.00 0.00 0.00 5.54
2918 3782 2.544694 CGAAGTCAGCATCTAATCGGCT 60.545 50.000 0.00 0.00 38.70 5.52
2952 3816 4.950744 CCAAGCTTGGCTTCAACG 57.049 55.556 31.70 6.62 46.77 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.973812 GAAGCAGGCCACCACCTTC 60.974 63.158 5.01 5.35 38.26 3.46
164 168 7.945033 TTTTGAATAAGGCAACAATTCAGTC 57.055 32.000 0.00 0.00 45.82 3.51
173 177 7.962373 GCATGGTTTATTTTTGAATAAGGCAAC 59.038 33.333 0.00 0.00 0.00 4.17
175 179 7.393216 AGCATGGTTTATTTTTGAATAAGGCA 58.607 30.769 0.00 0.00 0.00 4.75
176 180 7.848223 AGCATGGTTTATTTTTGAATAAGGC 57.152 32.000 0.00 0.00 0.00 4.35
198 204 1.009829 CCATCAGCGAACAACCTAGC 58.990 55.000 0.00 0.00 0.00 3.42
207 213 5.913137 AAACCAATTAATCCATCAGCGAA 57.087 34.783 0.00 0.00 0.00 4.70
453 478 7.761704 CCTCTTCTCCACATATTATTATCACCG 59.238 40.741 0.00 0.00 0.00 4.94
574 694 4.961438 TCATGCTGGCTCTCATGTATTA 57.039 40.909 11.69 0.00 40.54 0.98
579 699 2.298610 ACATTCATGCTGGCTCTCATG 58.701 47.619 7.53 7.53 40.92 3.07
599 719 8.270080 TCTGTTACTTACACATCAAACACAAA 57.730 30.769 0.00 0.00 32.10 2.83
670 864 5.411977 GCATCTAATATTGCTCATCTGCACT 59.588 40.000 0.00 0.00 43.20 4.40
697 891 9.096160 CAGATATAAGCATAATCACCATCTGAC 57.904 37.037 0.00 0.00 39.32 3.51
728 922 1.595794 GTACACATGTTAATCGGCCCG 59.404 52.381 0.00 0.00 0.00 6.13
731 925 2.538449 CTCGGTACACATGTTAATCGGC 59.462 50.000 9.35 0.00 0.00 5.54
783 977 0.034337 TTTCTTTGGGTACGAGCGCT 59.966 50.000 11.27 11.27 0.00 5.92
823 1020 4.920640 TCTTTTGTATTGTTTTGCCGGA 57.079 36.364 5.05 0.00 0.00 5.14
836 1033 8.361139 TGTCCAGAAACTTTGTTTTCTTTTGTA 58.639 29.630 0.00 0.00 42.09 2.41
843 1040 5.102313 CCACTGTCCAGAAACTTTGTTTTC 58.898 41.667 0.40 0.00 35.97 2.29
847 1044 2.241176 TCCCACTGTCCAGAAACTTTGT 59.759 45.455 0.40 0.00 0.00 2.83
903 1100 2.666098 TAGGAAGGAAGGCCGCACC 61.666 63.158 0.00 1.97 39.96 5.01
908 1105 1.141858 CATGGAGTAGGAAGGAAGGCC 59.858 57.143 0.00 0.00 0.00 5.19
921 1118 2.038557 ACGCCTTCTGTTTACATGGAGT 59.961 45.455 0.00 0.00 0.00 3.85
1045 1246 3.267860 CAGGCTTGCCGATCGCTC 61.268 66.667 10.32 4.02 38.78 5.03
1046 1247 3.729965 CTCAGGCTTGCCGATCGCT 62.730 63.158 10.32 0.00 38.78 4.93
1132 1338 8.383318 CACTAGTGTGGAGGGATTAATATTTG 57.617 38.462 15.06 0.00 40.33 2.32
1148 1354 5.276395 CGTCAGAGTTTTTGACACTAGTGTG 60.276 44.000 32.51 14.00 45.05 3.82
1149 1355 9.960056 CTCCGTCAGAGTTTTTGACACTAGTGT 62.960 44.444 28.27 28.27 43.98 3.55
1150 1356 4.209288 CCGTCAGAGTTTTTGACACTAGTG 59.791 45.833 21.44 21.44 43.98 2.74
1151 1357 4.098960 TCCGTCAGAGTTTTTGACACTAGT 59.901 41.667 6.25 0.00 43.98 2.57
1152 1358 4.617959 TCCGTCAGAGTTTTTGACACTAG 58.382 43.478 6.25 0.00 43.98 2.57
1153 1359 4.500887 CCTCCGTCAGAGTTTTTGACACTA 60.501 45.833 6.25 0.00 43.98 2.74
1154 1360 3.458189 CTCCGTCAGAGTTTTTGACACT 58.542 45.455 6.25 0.00 43.98 3.55
1155 1361 2.544267 CCTCCGTCAGAGTTTTTGACAC 59.456 50.000 6.25 0.00 43.98 3.67
1156 1362 2.484770 CCCTCCGTCAGAGTTTTTGACA 60.485 50.000 6.25 0.00 43.98 3.58
1157 1363 2.143925 CCCTCCGTCAGAGTTTTTGAC 58.856 52.381 0.00 0.00 41.47 3.18
1158 1364 2.037251 CTCCCTCCGTCAGAGTTTTTGA 59.963 50.000 0.00 0.00 41.47 2.69
1159 1365 2.224305 ACTCCCTCCGTCAGAGTTTTTG 60.224 50.000 0.00 0.00 41.47 2.44
1160 1366 2.047830 ACTCCCTCCGTCAGAGTTTTT 58.952 47.619 0.00 0.00 41.47 1.94
1161 1367 1.718280 ACTCCCTCCGTCAGAGTTTT 58.282 50.000 0.00 0.00 41.47 2.43
1162 1368 2.448453 CTACTCCCTCCGTCAGAGTTT 58.552 52.381 0.00 0.00 41.47 2.66
1163 1369 1.956159 GCTACTCCCTCCGTCAGAGTT 60.956 57.143 0.00 0.00 41.47 3.01
1164 1370 0.394625 GCTACTCCCTCCGTCAGAGT 60.395 60.000 0.00 0.00 41.47 3.24
1165 1371 0.106918 AGCTACTCCCTCCGTCAGAG 60.107 60.000 0.00 0.00 42.83 3.35
1166 1372 0.394488 CAGCTACTCCCTCCGTCAGA 60.394 60.000 0.00 0.00 0.00 3.27
1167 1373 2.010582 GCAGCTACTCCCTCCGTCAG 62.011 65.000 0.00 0.00 0.00 3.51
1168 1374 2.052690 GCAGCTACTCCCTCCGTCA 61.053 63.158 0.00 0.00 0.00 4.35
1169 1375 2.809010 GCAGCTACTCCCTCCGTC 59.191 66.667 0.00 0.00 0.00 4.79
1170 1376 3.141488 CGCAGCTACTCCCTCCGT 61.141 66.667 0.00 0.00 0.00 4.69
1171 1377 3.141488 ACGCAGCTACTCCCTCCG 61.141 66.667 0.00 0.00 0.00 4.63
1172 1378 2.496817 CACGCAGCTACTCCCTCC 59.503 66.667 0.00 0.00 0.00 4.30
1173 1379 2.202810 GCACGCAGCTACTCCCTC 60.203 66.667 0.00 0.00 41.15 4.30
1174 1380 1.903877 AATGCACGCAGCTACTCCCT 61.904 55.000 0.00 0.00 45.94 4.20
1175 1381 1.450312 AATGCACGCAGCTACTCCC 60.450 57.895 0.00 0.00 45.94 4.30
1176 1382 1.717937 CAATGCACGCAGCTACTCC 59.282 57.895 0.00 0.00 45.94 3.85
1177 1383 1.061570 GCAATGCACGCAGCTACTC 59.938 57.895 0.00 0.00 45.94 2.59
1178 1384 1.028330 ATGCAATGCACGCAGCTACT 61.028 50.000 11.23 0.00 43.04 2.57
1179 1385 0.864377 CATGCAATGCACGCAGCTAC 60.864 55.000 11.23 0.00 43.04 3.58
1180 1386 1.430228 CATGCAATGCACGCAGCTA 59.570 52.632 11.23 0.00 43.04 3.32
1181 1387 2.180769 CATGCAATGCACGCAGCT 59.819 55.556 11.23 0.00 43.04 4.24
1191 1397 1.753930 TTCGAGGTGATGCATGCAAT 58.246 45.000 26.68 13.38 0.00 3.56
1192 1398 1.753930 ATTCGAGGTGATGCATGCAA 58.246 45.000 26.68 6.15 0.00 4.08
1193 1399 1.672363 GAATTCGAGGTGATGCATGCA 59.328 47.619 25.04 25.04 0.00 3.96
1218 1424 3.922171 ACCTCCTCCTTGATAAAGCTG 57.078 47.619 0.00 0.00 0.00 4.24
1219 1425 3.589288 ACAACCTCCTCCTTGATAAAGCT 59.411 43.478 0.00 0.00 0.00 3.74
1238 1444 5.109210 CACGCCTACATCTTAATCTCACAA 58.891 41.667 0.00 0.00 0.00 3.33
1239 1445 4.682787 CACGCCTACATCTTAATCTCACA 58.317 43.478 0.00 0.00 0.00 3.58
1282 1491 3.136626 AGGGCAGGCGTAGATCTTAATTT 59.863 43.478 0.00 0.00 0.00 1.82
1283 1492 2.706190 AGGGCAGGCGTAGATCTTAATT 59.294 45.455 0.00 0.00 0.00 1.40
1285 1494 1.789523 AGGGCAGGCGTAGATCTTAA 58.210 50.000 0.00 0.00 0.00 1.85
1286 1495 2.670019 TAGGGCAGGCGTAGATCTTA 57.330 50.000 0.00 0.00 0.00 2.10
1287 1496 1.789523 TTAGGGCAGGCGTAGATCTT 58.210 50.000 0.00 0.00 0.00 2.40
1288 1497 2.016905 ATTAGGGCAGGCGTAGATCT 57.983 50.000 0.00 0.00 0.00 2.75
1289 1498 2.841442 AATTAGGGCAGGCGTAGATC 57.159 50.000 0.00 0.00 0.00 2.75
1290 1499 2.302157 GGTAATTAGGGCAGGCGTAGAT 59.698 50.000 0.00 0.00 0.00 1.98
1291 1500 1.690352 GGTAATTAGGGCAGGCGTAGA 59.310 52.381 0.00 0.00 0.00 2.59
1292 1501 1.692519 AGGTAATTAGGGCAGGCGTAG 59.307 52.381 0.00 0.00 0.00 3.51
1293 1502 1.797320 AGGTAATTAGGGCAGGCGTA 58.203 50.000 0.00 0.00 0.00 4.42
1294 1503 0.916809 AAGGTAATTAGGGCAGGCGT 59.083 50.000 0.00 0.00 0.00 5.68
1295 1504 1.676006 CAAAGGTAATTAGGGCAGGCG 59.324 52.381 0.00 0.00 0.00 5.52
1296 1505 2.735151 ACAAAGGTAATTAGGGCAGGC 58.265 47.619 0.00 0.00 0.00 4.85
1297 1506 4.334481 CGTAACAAAGGTAATTAGGGCAGG 59.666 45.833 0.00 0.00 0.00 4.85
1298 1507 4.201881 GCGTAACAAAGGTAATTAGGGCAG 60.202 45.833 0.00 0.00 0.00 4.85
1299 1508 3.690628 GCGTAACAAAGGTAATTAGGGCA 59.309 43.478 0.00 0.00 0.00 5.36
1300 1509 3.943381 AGCGTAACAAAGGTAATTAGGGC 59.057 43.478 0.00 0.00 0.00 5.19
1301 1510 6.594937 TGTAAGCGTAACAAAGGTAATTAGGG 59.405 38.462 0.00 0.00 0.00 3.53
1302 1511 7.599630 TGTAAGCGTAACAAAGGTAATTAGG 57.400 36.000 0.00 0.00 0.00 2.69
1303 1512 8.497554 TGTTGTAAGCGTAACAAAGGTAATTAG 58.502 33.333 3.60 0.00 38.50 1.73
1304 1513 8.375608 TGTTGTAAGCGTAACAAAGGTAATTA 57.624 30.769 3.60 0.00 38.50 1.40
1305 1514 7.261829 TGTTGTAAGCGTAACAAAGGTAATT 57.738 32.000 3.60 0.00 38.50 1.40
1306 1515 6.864360 TGTTGTAAGCGTAACAAAGGTAAT 57.136 33.333 3.60 0.00 38.50 1.89
1307 1516 6.674694 TTGTTGTAAGCGTAACAAAGGTAA 57.325 33.333 0.00 0.00 42.05 2.85
1308 1517 6.864360 ATTGTTGTAAGCGTAACAAAGGTA 57.136 33.333 12.39 0.00 46.21 3.08
1309 1518 5.761165 ATTGTTGTAAGCGTAACAAAGGT 57.239 34.783 12.39 0.00 46.21 3.50
1310 1519 7.201316 GCATAATTGTTGTAAGCGTAACAAAGG 60.201 37.037 12.39 3.89 46.21 3.11
1311 1520 7.324856 TGCATAATTGTTGTAAGCGTAACAAAG 59.675 33.333 12.39 6.80 46.21 2.77
1312 1521 7.139392 TGCATAATTGTTGTAAGCGTAACAAA 58.861 30.769 12.39 1.94 46.21 2.83
1313 1522 6.669278 TGCATAATTGTTGTAAGCGTAACAA 58.331 32.000 11.29 11.29 46.87 2.83
1380 1589 6.033407 GGTAATTACGCATGATGTGTTTGTTG 59.967 38.462 17.45 0.00 41.83 3.33
1389 1598 7.940178 TTAGTACTGGTAATTACGCATGATG 57.060 36.000 5.39 0.00 0.00 3.07
1396 1605 8.847567 CGCATAAGATTAGTACTGGTAATTACG 58.152 37.037 5.39 0.00 0.00 3.18
1405 1614 5.005394 ACAAACGCGCATAAGATTAGTACTG 59.995 40.000 5.73 0.00 0.00 2.74
1408 1620 4.260051 GCACAAACGCGCATAAGATTAGTA 60.260 41.667 5.73 0.00 0.00 1.82
1428 2137 0.733150 GATTAGTCCCCGCAAAGCAC 59.267 55.000 0.00 0.00 0.00 4.40
1430 2139 1.671328 GAAGATTAGTCCCCGCAAAGC 59.329 52.381 0.00 0.00 0.00 3.51
1460 2172 2.627863 TGCGCCAATGTGTAATCAAC 57.372 45.000 4.18 0.00 0.00 3.18
1465 2177 1.443802 TTCGATGCGCCAATGTGTAA 58.556 45.000 4.18 0.00 0.00 2.41
1470 2182 5.005586 ACAAATTAAATTCGATGCGCCAATG 59.994 36.000 4.18 0.00 0.00 2.82
1472 2184 4.489810 ACAAATTAAATTCGATGCGCCAA 58.510 34.783 4.18 0.00 0.00 4.52
1503 2216 1.268625 TCTCGAACTGCATGTACACGT 59.731 47.619 0.00 0.00 0.00 4.49
1531 2244 1.129998 TCGTCGTTCTTCTCATCGACC 59.870 52.381 10.16 0.00 46.18 4.79
1537 2250 2.490991 TCTGACTCGTCGTTCTTCTCA 58.509 47.619 0.00 0.00 0.00 3.27
1579 2292 4.207165 TGAGCTTTGCTAACCTTTCTTGT 58.793 39.130 0.00 0.00 39.88 3.16
1616 2329 7.847487 TGTTTACTTGATTAACGAGTTCTGTG 58.153 34.615 0.00 0.00 42.58 3.66
1617 2330 8.428186 TTGTTTACTTGATTAACGAGTTCTGT 57.572 30.769 0.00 0.00 42.58 3.41
1618 2331 9.710979 TTTTGTTTACTTGATTAACGAGTTCTG 57.289 29.630 0.00 0.00 42.58 3.02
1619 2332 9.712359 GTTTTGTTTACTTGATTAACGAGTTCT 57.288 29.630 0.00 0.00 42.58 3.01
1620 2333 9.712359 AGTTTTGTTTACTTGATTAACGAGTTC 57.288 29.630 0.00 0.00 42.58 3.01
1640 2367 1.421382 CAAGATGCCGGCAAGTTTTG 58.579 50.000 36.33 27.51 0.00 2.44
1660 2388 9.860898 AGGAGCAAGTGAATTAAATTAATCAAC 57.139 29.630 0.00 1.51 0.00 3.18
1936 2686 1.755008 GGCTAGTCTCCCGAGCAGT 60.755 63.158 0.00 0.00 42.99 4.40
1982 2732 7.556733 TTAAACGGAGAAAAACTTGCTAAGA 57.443 32.000 3.37 0.00 0.00 2.10
1983 2733 8.797266 AATTAAACGGAGAAAAACTTGCTAAG 57.203 30.769 0.00 0.00 0.00 2.18
1984 2734 7.863877 GGAATTAAACGGAGAAAAACTTGCTAA 59.136 33.333 0.00 0.00 0.00 3.09
1985 2735 7.229907 AGGAATTAAACGGAGAAAAACTTGCTA 59.770 33.333 0.00 0.00 0.00 3.49
1986 2736 6.040504 AGGAATTAAACGGAGAAAAACTTGCT 59.959 34.615 0.00 0.00 0.00 3.91
1996 2746 6.949352 ATAGTCGTAGGAATTAAACGGAGA 57.051 37.500 6.80 0.00 0.00 3.71
2006 2756 5.841957 ACGTGGTTTATAGTCGTAGGAAT 57.158 39.130 0.00 0.00 33.04 3.01
2008 2758 4.699735 TGAACGTGGTTTATAGTCGTAGGA 59.300 41.667 0.00 0.00 34.38 2.94
2009 2759 4.985413 TGAACGTGGTTTATAGTCGTAGG 58.015 43.478 0.00 0.00 34.38 3.18
2010 2760 5.287035 GGTTGAACGTGGTTTATAGTCGTAG 59.713 44.000 0.00 0.00 34.38 3.51
2012 2762 3.989817 GGTTGAACGTGGTTTATAGTCGT 59.010 43.478 0.00 0.00 36.31 4.34
2016 2775 5.349270 TCATTCGGTTGAACGTGGTTTATAG 59.651 40.000 0.00 0.00 36.81 1.31
2051 2855 5.678483 GCACAAGATATCAAAGCAATGTACG 59.322 40.000 5.32 0.00 0.00 3.67
2052 2856 6.789262 AGCACAAGATATCAAAGCAATGTAC 58.211 36.000 5.32 0.00 0.00 2.90
2053 2857 7.395190 AAGCACAAGATATCAAAGCAATGTA 57.605 32.000 5.32 0.00 0.00 2.29
2054 2858 5.909621 AGCACAAGATATCAAAGCAATGT 57.090 34.783 5.32 0.00 0.00 2.71
2055 2859 7.700505 TCTAAGCACAAGATATCAAAGCAATG 58.299 34.615 5.32 0.00 0.00 2.82
2056 2860 7.870509 TCTAAGCACAAGATATCAAAGCAAT 57.129 32.000 5.32 0.51 0.00 3.56
2057 2861 7.870509 ATCTAAGCACAAGATATCAAAGCAA 57.129 32.000 5.32 0.00 31.88 3.91
2058 2862 7.870509 AATCTAAGCACAAGATATCAAAGCA 57.129 32.000 5.32 0.00 33.32 3.91
2067 2871 9.077885 TGAAGGTTTAAAATCTAAGCACAAGAT 57.922 29.630 0.00 0.00 35.17 2.40
2068 2872 8.349983 GTGAAGGTTTAAAATCTAAGCACAAGA 58.650 33.333 0.00 0.00 0.00 3.02
2069 2873 8.352942 AGTGAAGGTTTAAAATCTAAGCACAAG 58.647 33.333 0.00 0.00 0.00 3.16
2070 2874 8.232913 AGTGAAGGTTTAAAATCTAAGCACAA 57.767 30.769 0.00 0.00 0.00 3.33
2089 2893 7.466050 GCGTAATGATCCCTTCTTAAAGTGAAG 60.466 40.741 0.00 0.00 40.23 3.02
2090 2894 6.315393 GCGTAATGATCCCTTCTTAAAGTGAA 59.685 38.462 0.00 0.00 0.00 3.18
2097 2901 3.494398 GCAGGCGTAATGATCCCTTCTTA 60.494 47.826 0.00 0.00 0.00 2.10
2113 2917 1.598676 CCATCAAAATCGATGCAGGCG 60.599 52.381 0.00 5.48 41.27 5.52
2116 2920 3.566742 TGGATCCATCAAAATCGATGCAG 59.433 43.478 11.44 0.00 41.27 4.41
2128 2932 2.510800 TGATCTTTGGCTGGATCCATCA 59.489 45.455 16.63 14.04 37.96 3.07
2129 2933 3.219176 TGATCTTTGGCTGGATCCATC 57.781 47.619 16.63 11.55 37.96 3.51
2134 2938 3.012518 CGAGTTTGATCTTTGGCTGGAT 58.987 45.455 0.00 0.00 0.00 3.41
2135 2939 2.038426 TCGAGTTTGATCTTTGGCTGGA 59.962 45.455 0.00 0.00 0.00 3.86
2136 2940 2.417933 CTCGAGTTTGATCTTTGGCTGG 59.582 50.000 3.62 0.00 0.00 4.85
2137 2941 3.329386 TCTCGAGTTTGATCTTTGGCTG 58.671 45.455 13.13 0.00 0.00 4.85
2138 2942 3.685139 TCTCGAGTTTGATCTTTGGCT 57.315 42.857 13.13 0.00 0.00 4.75
2139 2943 4.954092 AATCTCGAGTTTGATCTTTGGC 57.046 40.909 13.13 0.00 0.00 4.52
2140 2944 9.495754 GATTAAAATCTCGAGTTTGATCTTTGG 57.504 33.333 18.37 0.00 37.94 3.28
2141 2945 9.495754 GGATTAAAATCTCGAGTTTGATCTTTG 57.504 33.333 21.88 0.00 39.61 2.77
2142 2946 9.454859 AGGATTAAAATCTCGAGTTTGATCTTT 57.545 29.630 21.88 13.68 39.61 2.52
2143 2947 9.454859 AAGGATTAAAATCTCGAGTTTGATCTT 57.545 29.630 21.88 16.41 39.61 2.40
2144 2948 8.887717 CAAGGATTAAAATCTCGAGTTTGATCT 58.112 33.333 21.88 12.16 39.61 2.75
2145 2949 8.669243 ACAAGGATTAAAATCTCGAGTTTGATC 58.331 33.333 17.82 17.82 39.24 2.92
2146 2950 8.567285 ACAAGGATTAAAATCTCGAGTTTGAT 57.433 30.769 13.13 8.73 35.73 2.57
2147 2951 7.979444 ACAAGGATTAAAATCTCGAGTTTGA 57.021 32.000 13.13 3.93 35.73 2.69
2148 2952 9.463443 AAAACAAGGATTAAAATCTCGAGTTTG 57.537 29.630 13.13 0.00 35.73 2.93
2150 2954 9.463443 CAAAAACAAGGATTAAAATCTCGAGTT 57.537 29.630 13.13 0.15 35.73 3.01
2151 2955 8.630037 ACAAAAACAAGGATTAAAATCTCGAGT 58.370 29.630 13.13 0.00 35.73 4.18
2152 2956 9.118236 GACAAAAACAAGGATTAAAATCTCGAG 57.882 33.333 5.93 5.93 35.73 4.04
2153 2957 8.846211 AGACAAAAACAAGGATTAAAATCTCGA 58.154 29.630 2.91 0.00 35.73 4.04
2154 2958 9.118236 GAGACAAAAACAAGGATTAAAATCTCG 57.882 33.333 2.91 0.00 35.73 4.04
2156 2960 9.971922 CAGAGACAAAAACAAGGATTAAAATCT 57.028 29.630 2.91 0.00 35.73 2.40
2157 2961 9.196552 CCAGAGACAAAAACAAGGATTAAAATC 57.803 33.333 0.00 0.00 34.66 2.17
2158 2962 8.704668 ACCAGAGACAAAAACAAGGATTAAAAT 58.295 29.630 0.00 0.00 0.00 1.82
2159 2963 8.073467 ACCAGAGACAAAAACAAGGATTAAAA 57.927 30.769 0.00 0.00 0.00 1.52
2160 2964 7.559897 AGACCAGAGACAAAAACAAGGATTAAA 59.440 33.333 0.00 0.00 0.00 1.52
2161 2965 7.060421 AGACCAGAGACAAAAACAAGGATTAA 58.940 34.615 0.00 0.00 0.00 1.40
2162 2966 6.601332 AGACCAGAGACAAAAACAAGGATTA 58.399 36.000 0.00 0.00 0.00 1.75
2178 2982 2.896685 ACAAGGAACAGAGAGACCAGAG 59.103 50.000 0.00 0.00 0.00 3.35
2180 2984 3.760580 AACAAGGAACAGAGAGACCAG 57.239 47.619 0.00 0.00 0.00 4.00
2183 2987 3.491267 CACGAAACAAGGAACAGAGAGAC 59.509 47.826 0.00 0.00 0.00 3.36
2184 2988 3.717707 CACGAAACAAGGAACAGAGAGA 58.282 45.455 0.00 0.00 0.00 3.10
2185 2989 2.221981 GCACGAAACAAGGAACAGAGAG 59.778 50.000 0.00 0.00 0.00 3.20
2186 2990 2.210116 GCACGAAACAAGGAACAGAGA 58.790 47.619 0.00 0.00 0.00 3.10
2187 2991 1.939934 TGCACGAAACAAGGAACAGAG 59.060 47.619 0.00 0.00 0.00 3.35
2203 3010 1.593196 TGTCTACACAAGGCTTGCAC 58.407 50.000 26.45 15.06 0.00 4.57
2205 3012 3.708563 TTTTGTCTACACAAGGCTTGC 57.291 42.857 26.45 10.00 43.54 4.01
2256 3067 2.566010 CATTGGGTTCGGGCGTTG 59.434 61.111 0.00 0.00 0.00 4.10
2257 3068 3.370231 GCATTGGGTTCGGGCGTT 61.370 61.111 0.00 0.00 0.00 4.84
2282 3093 9.804547 GCATTCAGTCGCAAAATAAAATAAAAA 57.195 25.926 0.00 0.00 0.00 1.94
2283 3094 9.202273 AGCATTCAGTCGCAAAATAAAATAAAA 57.798 25.926 0.00 0.00 0.00 1.52
2284 3095 8.755696 AGCATTCAGTCGCAAAATAAAATAAA 57.244 26.923 0.00 0.00 0.00 1.40
2285 3096 8.243426 AGAGCATTCAGTCGCAAAATAAAATAA 58.757 29.630 0.00 0.00 0.00 1.40
2286 3097 7.697710 CAGAGCATTCAGTCGCAAAATAAAATA 59.302 33.333 0.00 0.00 0.00 1.40
2287 3098 6.529125 CAGAGCATTCAGTCGCAAAATAAAAT 59.471 34.615 0.00 0.00 0.00 1.82
2288 3099 5.858049 CAGAGCATTCAGTCGCAAAATAAAA 59.142 36.000 0.00 0.00 0.00 1.52
2289 3100 5.048782 ACAGAGCATTCAGTCGCAAAATAAA 60.049 36.000 0.00 0.00 0.00 1.40
2290 3101 4.455533 ACAGAGCATTCAGTCGCAAAATAA 59.544 37.500 0.00 0.00 0.00 1.40
2291 3102 4.002982 ACAGAGCATTCAGTCGCAAAATA 58.997 39.130 0.00 0.00 0.00 1.40
2292 3103 2.816087 ACAGAGCATTCAGTCGCAAAAT 59.184 40.909 0.00 0.00 0.00 1.82
2293 3104 2.221169 ACAGAGCATTCAGTCGCAAAA 58.779 42.857 0.00 0.00 0.00 2.44
2294 3105 1.882912 ACAGAGCATTCAGTCGCAAA 58.117 45.000 0.00 0.00 0.00 3.68
2295 3106 2.741759 TACAGAGCATTCAGTCGCAA 57.258 45.000 0.00 0.00 0.00 4.85
2296 3107 2.967599 ATACAGAGCATTCAGTCGCA 57.032 45.000 0.00 0.00 0.00 5.10
2297 3108 4.606457 AAAATACAGAGCATTCAGTCGC 57.394 40.909 0.00 0.00 0.00 5.19
2298 3109 4.790140 GCAAAAATACAGAGCATTCAGTCG 59.210 41.667 0.00 0.00 0.00 4.18
2299 3110 5.798934 CAGCAAAAATACAGAGCATTCAGTC 59.201 40.000 0.00 0.00 0.00 3.51
2300 3111 5.474532 TCAGCAAAAATACAGAGCATTCAGT 59.525 36.000 0.00 0.00 0.00 3.41
2301 3112 5.946298 TCAGCAAAAATACAGAGCATTCAG 58.054 37.500 0.00 0.00 0.00 3.02
2302 3113 5.963176 TCAGCAAAAATACAGAGCATTCA 57.037 34.783 0.00 0.00 0.00 2.57
2303 3114 6.558009 TCATCAGCAAAAATACAGAGCATTC 58.442 36.000 0.00 0.00 0.00 2.67
2304 3115 6.376299 TCTCATCAGCAAAAATACAGAGCATT 59.624 34.615 0.00 0.00 0.00 3.56
2305 3116 5.884232 TCTCATCAGCAAAAATACAGAGCAT 59.116 36.000 0.00 0.00 0.00 3.79
2306 3117 5.247862 TCTCATCAGCAAAAATACAGAGCA 58.752 37.500 0.00 0.00 0.00 4.26
2307 3118 5.808042 TCTCATCAGCAAAAATACAGAGC 57.192 39.130 0.00 0.00 0.00 4.09
2308 3119 9.932699 CTTAATCTCATCAGCAAAAATACAGAG 57.067 33.333 0.00 0.00 0.00 3.35
2309 3120 8.896744 CCTTAATCTCATCAGCAAAAATACAGA 58.103 33.333 0.00 0.00 0.00 3.41
2310 3121 7.646922 GCCTTAATCTCATCAGCAAAAATACAG 59.353 37.037 0.00 0.00 0.00 2.74
2311 3122 7.122501 TGCCTTAATCTCATCAGCAAAAATACA 59.877 33.333 0.00 0.00 0.00 2.29
2312 3123 7.483307 TGCCTTAATCTCATCAGCAAAAATAC 58.517 34.615 0.00 0.00 0.00 1.89
2313 3124 7.643569 TGCCTTAATCTCATCAGCAAAAATA 57.356 32.000 0.00 0.00 0.00 1.40
2314 3125 6.534475 TGCCTTAATCTCATCAGCAAAAAT 57.466 33.333 0.00 0.00 0.00 1.82
2335 3146 2.583593 GGTCGGCGTCAGAGATGC 60.584 66.667 6.85 2.68 43.13 3.91
2353 3164 1.784283 GTTTTGAATGACCGGTTTGCG 59.216 47.619 9.42 0.00 0.00 4.85
2359 3170 1.396996 CGGCTAGTTTTGAATGACCGG 59.603 52.381 0.00 0.00 35.85 5.28
2363 3226 4.881273 ACATATGCGGCTAGTTTTGAATGA 59.119 37.500 1.58 0.00 0.00 2.57
2387 3250 1.841663 TTCGACCGAAAAGCAGCTGC 61.842 55.000 31.53 31.53 42.49 5.25
2391 3254 8.442605 TTTATTAAATTTCGACCGAAAAGCAG 57.557 30.769 19.39 0.00 45.60 4.24
2466 3329 9.747898 TCCAGTGTTATGTAAAATTATCCAAGT 57.252 29.630 0.00 0.00 0.00 3.16
2480 3344 2.803956 CGAAAACCGTCCAGTGTTATGT 59.196 45.455 0.00 0.00 0.00 2.29
2486 3350 1.508632 ATGTCGAAAACCGTCCAGTG 58.491 50.000 0.00 0.00 39.75 3.66
2489 3353 6.427547 AGTTTAAATATGTCGAAAACCGTCCA 59.572 34.615 3.63 0.00 39.75 4.02
2493 3357 8.866956 AGTCTAGTTTAAATATGTCGAAAACCG 58.133 33.333 3.63 0.00 40.25 4.44
2516 3380 8.354426 CAATTAGGCTAGGTTTAGAGTCTAGTC 58.646 40.741 0.00 0.00 36.34 2.59
2518 3382 8.354426 GTCAATTAGGCTAGGTTTAGAGTCTAG 58.646 40.741 0.00 0.00 35.02 2.43
2519 3383 7.287235 GGTCAATTAGGCTAGGTTTAGAGTCTA 59.713 40.741 0.00 0.00 0.00 2.59
2552 3416 3.712907 CGGACATGGGGAACGGGT 61.713 66.667 0.00 0.00 0.00 5.28
2578 3442 2.686106 GGTAGTTCCCGGGGCTCA 60.686 66.667 23.50 0.00 0.00 4.26
2588 3452 4.126524 GCTCATGGCCGGTAGTTC 57.873 61.111 1.90 0.00 34.27 3.01
2605 3469 4.479993 CAGAGCTTCAGCCCGGGG 62.480 72.222 25.28 9.31 43.38 5.73
2611 3475 2.511145 CGGAGGCAGAGCTTCAGC 60.511 66.667 3.56 0.00 36.34 4.26
2648 3512 1.815003 TGCTCATCATCGTTGGCCG 60.815 57.895 0.00 0.00 38.13 6.13
2649 3513 1.723870 GTGCTCATCATCGTTGGCC 59.276 57.895 0.00 0.00 0.00 5.36
2650 3514 1.349627 CGTGCTCATCATCGTTGGC 59.650 57.895 0.00 0.00 0.00 4.52
2651 3515 1.349627 GCGTGCTCATCATCGTTGG 59.650 57.895 0.00 0.00 0.00 3.77
2652 3516 1.349627 GGCGTGCTCATCATCGTTG 59.650 57.895 0.00 0.00 0.00 4.10
2653 3517 0.673333 TTGGCGTGCTCATCATCGTT 60.673 50.000 0.00 0.00 0.00 3.85
2654 3518 1.079197 TTGGCGTGCTCATCATCGT 60.079 52.632 0.00 0.00 0.00 3.73
2655 3519 1.640069 CTTGGCGTGCTCATCATCG 59.360 57.895 0.00 0.00 0.00 3.84
2656 3520 1.094073 AGCTTGGCGTGCTCATCATC 61.094 55.000 0.00 0.00 35.67 2.92
2657 3521 0.679002 AAGCTTGGCGTGCTCATCAT 60.679 50.000 0.00 0.00 40.22 2.45
2658 3522 1.302752 AAGCTTGGCGTGCTCATCA 60.303 52.632 0.00 0.00 40.22 3.07
2659 3523 1.136147 CAAGCTTGGCGTGCTCATC 59.864 57.895 19.14 0.00 40.22 2.92
2660 3524 2.338015 CCAAGCTTGGCGTGCTCAT 61.338 57.895 31.70 0.00 42.21 2.90
2661 3525 2.979676 CCAAGCTTGGCGTGCTCA 60.980 61.111 31.70 0.00 42.21 4.26
2672 3536 3.618780 CTCCCGCTGAAGCCAAGCT 62.619 63.158 0.00 0.00 42.56 3.74
2673 3537 3.130160 CTCCCGCTGAAGCCAAGC 61.130 66.667 0.00 0.00 37.91 4.01
2674 3538 3.130160 GCTCCCGCTGAAGCCAAG 61.130 66.667 0.00 0.00 37.91 3.61
2677 3541 4.760047 TTCGCTCCCGCTGAAGCC 62.760 66.667 0.00 0.00 37.91 4.35
2678 3542 2.742372 TTTCGCTCCCGCTGAAGC 60.742 61.111 0.00 0.00 32.99 3.86
2679 3543 1.079819 TCTTTCGCTCCCGCTGAAG 60.080 57.895 0.00 0.00 32.99 3.02
2680 3544 1.079819 CTCTTTCGCTCCCGCTGAA 60.080 57.895 0.00 0.00 0.00 3.02
2681 3545 2.573869 CTCTTTCGCTCCCGCTGA 59.426 61.111 0.00 0.00 0.00 4.26
2682 3546 3.191539 GCTCTTTCGCTCCCGCTG 61.192 66.667 0.00 0.00 0.00 5.18
2683 3547 4.803426 CGCTCTTTCGCTCCCGCT 62.803 66.667 0.00 0.00 0.00 5.52
2685 3549 4.436998 ACCGCTCTTTCGCTCCCG 62.437 66.667 0.00 0.00 0.00 5.14
2686 3550 2.781595 TTCACCGCTCTTTCGCTCCC 62.782 60.000 0.00 0.00 0.00 4.30
2687 3551 1.374252 TTCACCGCTCTTTCGCTCC 60.374 57.895 0.00 0.00 0.00 4.70
2688 3552 0.667792 AGTTCACCGCTCTTTCGCTC 60.668 55.000 0.00 0.00 0.00 5.03
2689 3553 0.249911 AAGTTCACCGCTCTTTCGCT 60.250 50.000 0.00 0.00 0.00 4.93
2690 3554 0.164002 GAAGTTCACCGCTCTTTCGC 59.836 55.000 0.00 0.00 0.00 4.70
2691 3555 1.784525 AGAAGTTCACCGCTCTTTCG 58.215 50.000 5.50 0.00 0.00 3.46
2692 3556 2.224314 CCAAGAAGTTCACCGCTCTTTC 59.776 50.000 5.50 0.00 0.00 2.62
2693 3557 2.222027 CCAAGAAGTTCACCGCTCTTT 58.778 47.619 5.50 0.00 0.00 2.52
2694 3558 1.543429 CCCAAGAAGTTCACCGCTCTT 60.543 52.381 5.50 0.00 0.00 2.85
2695 3559 0.035458 CCCAAGAAGTTCACCGCTCT 59.965 55.000 5.50 0.00 0.00 4.09
2696 3560 0.034896 TCCCAAGAAGTTCACCGCTC 59.965 55.000 5.50 0.00 0.00 5.03
2697 3561 0.250338 GTCCCAAGAAGTTCACCGCT 60.250 55.000 5.50 0.00 0.00 5.52
2698 3562 1.235281 GGTCCCAAGAAGTTCACCGC 61.235 60.000 5.50 0.00 0.00 5.68
2699 3563 0.605589 GGGTCCCAAGAAGTTCACCG 60.606 60.000 1.78 0.00 0.00 4.94
2700 3564 0.605589 CGGGTCCCAAGAAGTTCACC 60.606 60.000 9.12 3.24 0.00 4.02
2701 3565 0.395312 TCGGGTCCCAAGAAGTTCAC 59.605 55.000 9.12 0.00 0.00 3.18
2702 3566 0.685097 CTCGGGTCCCAAGAAGTTCA 59.315 55.000 9.12 0.00 0.00 3.18
2703 3567 0.673956 GCTCGGGTCCCAAGAAGTTC 60.674 60.000 9.12 0.00 0.00 3.01
2704 3568 1.375326 GCTCGGGTCCCAAGAAGTT 59.625 57.895 9.12 0.00 0.00 2.66
2705 3569 2.943978 CGCTCGGGTCCCAAGAAGT 61.944 63.158 9.12 0.00 0.00 3.01
2706 3570 2.125512 CGCTCGGGTCCCAAGAAG 60.126 66.667 9.12 0.45 0.00 2.85
2707 3571 4.388499 GCGCTCGGGTCCCAAGAA 62.388 66.667 9.12 0.00 0.00 2.52
2725 3589 4.899239 GAGCATGGGAGGTCGCCG 62.899 72.222 0.00 0.00 0.00 6.46
2726 3590 3.036429 AAGAGCATGGGAGGTCGCC 62.036 63.158 0.00 0.00 40.77 5.54
2727 3591 1.817099 CAAGAGCATGGGAGGTCGC 60.817 63.158 0.00 0.00 40.77 5.19
2728 3592 0.460987 GACAAGAGCATGGGAGGTCG 60.461 60.000 0.00 0.00 40.77 4.79
2729 3593 0.107459 GGACAAGAGCATGGGAGGTC 60.107 60.000 0.00 0.00 36.31 3.85
2730 3594 0.548682 AGGACAAGAGCATGGGAGGT 60.549 55.000 0.00 0.00 0.00 3.85
2731 3595 0.179936 GAGGACAAGAGCATGGGAGG 59.820 60.000 0.00 0.00 0.00 4.30
2732 3596 0.179936 GGAGGACAAGAGCATGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
2733 3597 0.252881 AGGAGGACAAGAGCATGGGA 60.253 55.000 0.00 0.00 0.00 4.37
2734 3598 0.179936 GAGGAGGACAAGAGCATGGG 59.820 60.000 0.00 0.00 0.00 4.00
2735 3599 0.179089 CGAGGAGGACAAGAGCATGG 60.179 60.000 0.00 0.00 0.00 3.66
2736 3600 0.809241 GCGAGGAGGACAAGAGCATG 60.809 60.000 0.00 0.00 0.00 4.06
2737 3601 0.975040 AGCGAGGAGGACAAGAGCAT 60.975 55.000 0.00 0.00 0.00 3.79
2738 3602 1.607756 AGCGAGGAGGACAAGAGCA 60.608 57.895 0.00 0.00 0.00 4.26
2739 3603 1.153667 CAGCGAGGAGGACAAGAGC 60.154 63.158 0.00 0.00 0.00 4.09
2740 3604 1.153667 GCAGCGAGGAGGACAAGAG 60.154 63.158 0.00 0.00 0.00 2.85
2741 3605 2.650116 GGCAGCGAGGAGGACAAGA 61.650 63.158 0.00 0.00 0.00 3.02
2742 3606 2.125350 GGCAGCGAGGAGGACAAG 60.125 66.667 0.00 0.00 0.00 3.16
2743 3607 4.069232 CGGCAGCGAGGAGGACAA 62.069 66.667 0.00 0.00 0.00 3.18
2762 3626 4.619227 ACACGTCCAAGGGTGCCG 62.619 66.667 0.00 0.00 37.68 5.69
2763 3627 2.668550 GACACGTCCAAGGGTGCC 60.669 66.667 0.00 0.00 37.68 5.01
2772 3636 2.100631 CCATGAAGCGGACACGTCC 61.101 63.158 6.12 6.12 46.18 4.79
2773 3637 1.352156 GACCATGAAGCGGACACGTC 61.352 60.000 0.00 0.00 43.45 4.34
2774 3638 1.374252 GACCATGAAGCGGACACGT 60.374 57.895 0.00 0.00 43.45 4.49
2775 3639 0.740868 ATGACCATGAAGCGGACACG 60.741 55.000 0.00 0.00 44.63 4.49
2776 3640 0.729116 CATGACCATGAAGCGGACAC 59.271 55.000 4.03 0.00 41.20 3.67
2777 3641 0.392863 CCATGACCATGAAGCGGACA 60.393 55.000 11.28 0.00 41.20 4.02
2778 3642 1.718757 GCCATGACCATGAAGCGGAC 61.719 60.000 11.28 0.00 41.20 4.79
2779 3643 1.451927 GCCATGACCATGAAGCGGA 60.452 57.895 11.28 0.00 41.20 5.54
2780 3644 1.721664 CTGCCATGACCATGAAGCGG 61.722 60.000 11.28 8.25 41.20 5.52
2781 3645 1.725665 CTGCCATGACCATGAAGCG 59.274 57.895 11.28 0.00 41.20 4.68
2782 3646 1.317431 TGCTGCCATGACCATGAAGC 61.317 55.000 20.77 20.77 42.99 3.86
2783 3647 0.738975 CTGCTGCCATGACCATGAAG 59.261 55.000 11.28 9.21 41.20 3.02
2784 3648 0.681887 CCTGCTGCCATGACCATGAA 60.682 55.000 11.28 0.00 41.20 2.57
2785 3649 1.077285 CCTGCTGCCATGACCATGA 60.077 57.895 11.28 0.00 41.20 3.07
2786 3650 2.782222 GCCTGCTGCCATGACCATG 61.782 63.158 0.00 3.11 38.51 3.66
2787 3651 2.441532 GCCTGCTGCCATGACCAT 60.442 61.111 0.00 0.00 0.00 3.55
2810 3674 3.730761 GTTGCCAGCTCTGCCACG 61.731 66.667 2.46 0.00 0.00 4.94
2811 3675 1.930908 GATGTTGCCAGCTCTGCCAC 61.931 60.000 2.46 2.65 0.00 5.01
2812 3676 1.676635 GATGTTGCCAGCTCTGCCA 60.677 57.895 2.46 0.00 0.00 4.92
2813 3677 2.758089 CGATGTTGCCAGCTCTGCC 61.758 63.158 2.46 0.00 0.00 4.85
2814 3678 1.975363 GACGATGTTGCCAGCTCTGC 61.975 60.000 0.00 0.00 0.00 4.26
2815 3679 1.364626 GGACGATGTTGCCAGCTCTG 61.365 60.000 0.00 0.00 0.00 3.35
2816 3680 1.078848 GGACGATGTTGCCAGCTCT 60.079 57.895 0.00 0.00 0.00 4.09
2817 3681 1.078848 AGGACGATGTTGCCAGCTC 60.079 57.895 0.00 0.00 0.00 4.09
2818 3682 1.078848 GAGGACGATGTTGCCAGCT 60.079 57.895 0.00 0.00 0.00 4.24
2819 3683 2.456119 CGAGGACGATGTTGCCAGC 61.456 63.158 0.00 0.00 42.66 4.85
2820 3684 1.078759 GACGAGGACGATGTTGCCAG 61.079 60.000 0.00 0.00 42.66 4.85
2821 3685 1.080093 GACGAGGACGATGTTGCCA 60.080 57.895 0.00 0.00 42.66 4.92
2822 3686 1.810030 GGACGAGGACGATGTTGCC 60.810 63.158 0.00 0.00 42.66 4.52
2823 3687 0.802607 GAGGACGAGGACGATGTTGC 60.803 60.000 0.00 0.00 42.66 4.17
2824 3688 0.523546 CGAGGACGAGGACGATGTTG 60.524 60.000 0.00 0.00 42.66 3.33
2825 3689 1.801332 CGAGGACGAGGACGATGTT 59.199 57.895 0.00 0.00 42.66 2.71
2826 3690 2.762234 GCGAGGACGAGGACGATGT 61.762 63.158 0.00 0.00 42.66 3.06
2827 3691 2.024871 GCGAGGACGAGGACGATG 59.975 66.667 0.00 0.00 42.66 3.84
2828 3692 2.124653 AGCGAGGACGAGGACGAT 60.125 61.111 0.00 0.00 42.66 3.73
2829 3693 2.799814 AAGAGCGAGGACGAGGACGA 62.800 60.000 0.00 0.00 42.66 4.20
2830 3694 2.400158 AAGAGCGAGGACGAGGACG 61.400 63.158 0.00 0.00 42.66 4.79
2831 3695 1.137825 CAAGAGCGAGGACGAGGAC 59.862 63.158 0.00 0.00 42.66 3.85
2832 3696 1.303398 ACAAGAGCGAGGACGAGGA 60.303 57.895 0.00 0.00 42.66 3.71
2833 3697 1.137825 GACAAGAGCGAGGACGAGG 59.862 63.158 0.00 0.00 42.66 4.63
2834 3698 1.226156 CGACAAGAGCGAGGACGAG 60.226 63.158 0.00 0.00 42.66 4.18
2835 3699 0.671472 TACGACAAGAGCGAGGACGA 60.671 55.000 0.00 0.00 42.66 4.20
2836 3700 0.247735 CTACGACAAGAGCGAGGACG 60.248 60.000 0.00 0.00 42.93 4.79
2837 3701 1.085091 TCTACGACAAGAGCGAGGAC 58.915 55.000 0.00 0.00 0.00 3.85
2838 3702 1.085091 GTCTACGACAAGAGCGAGGA 58.915 55.000 0.00 0.00 32.09 3.71
2839 3703 1.088306 AGTCTACGACAAGAGCGAGG 58.912 55.000 0.00 0.00 34.60 4.63
2840 3704 2.159824 TGAAGTCTACGACAAGAGCGAG 59.840 50.000 0.00 0.00 34.60 5.03
2841 3705 2.148768 TGAAGTCTACGACAAGAGCGA 58.851 47.619 0.00 0.00 34.60 4.93
2842 3706 2.613730 TGAAGTCTACGACAAGAGCG 57.386 50.000 0.00 0.00 34.60 5.03
2843 3707 4.686554 ACAAATGAAGTCTACGACAAGAGC 59.313 41.667 0.00 0.00 34.60 4.09
2844 3708 5.059832 CGACAAATGAAGTCTACGACAAGAG 59.940 44.000 0.00 0.00 34.60 2.85
2845 3709 4.915667 CGACAAATGAAGTCTACGACAAGA 59.084 41.667 0.00 0.00 34.60 3.02
2846 3710 4.680110 ACGACAAATGAAGTCTACGACAAG 59.320 41.667 0.00 0.00 34.60 3.16
2847 3711 4.443063 CACGACAAATGAAGTCTACGACAA 59.557 41.667 0.00 0.00 34.60 3.18
2848 3712 3.978855 CACGACAAATGAAGTCTACGACA 59.021 43.478 0.00 0.00 34.60 4.35
2849 3713 3.364023 CCACGACAAATGAAGTCTACGAC 59.636 47.826 0.00 0.00 33.89 4.34
2850 3714 3.005050 ACCACGACAAATGAAGTCTACGA 59.995 43.478 0.00 0.00 33.89 3.43
2851 3715 3.314553 ACCACGACAAATGAAGTCTACG 58.685 45.455 0.00 0.00 33.89 3.51
2852 3716 4.304110 TGACCACGACAAATGAAGTCTAC 58.696 43.478 0.00 0.00 33.89 2.59
2853 3717 4.594123 TGACCACGACAAATGAAGTCTA 57.406 40.909 0.00 0.00 33.89 2.59
2854 3718 3.469008 TGACCACGACAAATGAAGTCT 57.531 42.857 0.00 0.00 33.89 3.24
2855 3719 3.120199 CCATGACCACGACAAATGAAGTC 60.120 47.826 0.00 0.00 0.00 3.01
2856 3720 2.813754 CCATGACCACGACAAATGAAGT 59.186 45.455 0.00 0.00 0.00 3.01
2857 3721 2.414559 GCCATGACCACGACAAATGAAG 60.415 50.000 0.00 0.00 0.00 3.02
2858 3722 1.539388 GCCATGACCACGACAAATGAA 59.461 47.619 0.00 0.00 0.00 2.57
2859 3723 1.164411 GCCATGACCACGACAAATGA 58.836 50.000 0.00 0.00 0.00 2.57
2860 3724 0.179192 CGCCATGACCACGACAAATG 60.179 55.000 0.00 0.00 0.00 2.32
2861 3725 1.305219 CCGCCATGACCACGACAAAT 61.305 55.000 0.00 0.00 0.00 2.32
2862 3726 1.963855 CCGCCATGACCACGACAAA 60.964 57.895 0.00 0.00 0.00 2.83
2863 3727 2.358125 CCGCCATGACCACGACAA 60.358 61.111 0.00 0.00 0.00 3.18
2883 3747 3.901797 CTTCGCCACACTCACCCCC 62.902 68.421 0.00 0.00 0.00 5.40
2884 3748 2.358737 CTTCGCCACACTCACCCC 60.359 66.667 0.00 0.00 0.00 4.95
2885 3749 1.668151 GACTTCGCCACACTCACCC 60.668 63.158 0.00 0.00 0.00 4.61
2886 3750 0.946221 CTGACTTCGCCACACTCACC 60.946 60.000 0.00 0.00 0.00 4.02
2887 3751 1.560860 GCTGACTTCGCCACACTCAC 61.561 60.000 0.00 0.00 0.00 3.51
2888 3752 1.300931 GCTGACTTCGCCACACTCA 60.301 57.895 0.00 0.00 0.00 3.41
2889 3753 0.671781 ATGCTGACTTCGCCACACTC 60.672 55.000 0.00 0.00 0.00 3.51
2890 3754 0.671781 GATGCTGACTTCGCCACACT 60.672 55.000 0.00 0.00 0.00 3.55
2891 3755 0.671781 AGATGCTGACTTCGCCACAC 60.672 55.000 0.00 0.00 0.00 3.82
2892 3756 0.894835 TAGATGCTGACTTCGCCACA 59.105 50.000 0.00 0.00 0.00 4.17
2893 3757 2.010145 TTAGATGCTGACTTCGCCAC 57.990 50.000 0.00 0.00 0.00 5.01
2894 3758 2.799562 CGATTAGATGCTGACTTCGCCA 60.800 50.000 0.00 0.00 0.00 5.69
2895 3759 1.789464 CGATTAGATGCTGACTTCGCC 59.211 52.381 0.00 0.00 0.00 5.54
2896 3760 1.789464 CCGATTAGATGCTGACTTCGC 59.211 52.381 0.00 0.00 0.00 4.70
2897 3761 1.789464 GCCGATTAGATGCTGACTTCG 59.211 52.381 0.00 0.00 0.00 3.79
2898 3762 3.104843 AGCCGATTAGATGCTGACTTC 57.895 47.619 0.00 0.00 33.23 3.01
2904 3768 1.032794 TCGTCAGCCGATTAGATGCT 58.967 50.000 0.00 0.00 41.60 3.79
2905 3769 3.569916 TCGTCAGCCGATTAGATGC 57.430 52.632 0.00 0.00 41.60 3.91
2917 3781 1.953138 GCGGGCTCATCATCGTCAG 60.953 63.158 0.00 0.00 0.00 3.51
2918 3782 2.106938 GCGGGCTCATCATCGTCA 59.893 61.111 0.00 0.00 0.00 4.35
2921 3785 2.203056 TTGGCGGGCTCATCATCG 60.203 61.111 2.38 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.