Multiple sequence alignment - TraesCS5D01G160400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G160400 chr5D 100.000 6378 0 0 1 6378 250066563 250072940 0.000000e+00 11779.0
1 TraesCS5D01G160400 chr5D 98.256 172 3 0 3664 3835 135658993 135659164 1.040000e-77 302.0
2 TraesCS5D01G160400 chr5D 97.714 175 4 0 3661 3835 363124858 363125032 1.040000e-77 302.0
3 TraesCS5D01G160400 chr5D 90.135 223 10 1 1055 1277 404477412 404477202 4.870000e-71 279.0
4 TraesCS5D01G160400 chr5D 97.753 89 2 0 6173 6261 225253270 225253182 3.080000e-33 154.0
5 TraesCS5D01G160400 chr5D 95.699 93 4 0 6172 6264 447423813 447423721 3.980000e-32 150.0
6 TraesCS5D01G160400 chr5D 86.620 142 7 6 1060 1201 297174290 297174419 5.150000e-31 147.0
7 TraesCS5D01G160400 chr5A 95.456 3059 85 19 668 3698 333413931 333416963 0.000000e+00 4830.0
8 TraesCS5D01G160400 chr5A 97.144 2031 34 12 3809 5832 333417213 333419226 0.000000e+00 3408.0
9 TraesCS5D01G160400 chr5A 84.185 411 25 7 8 399 333413047 333413436 4.700000e-96 363.0
10 TraesCS5D01G160400 chr5A 94.470 217 12 0 5910 6126 333419223 333419439 1.020000e-87 335.0
11 TraesCS5D01G160400 chr5A 95.333 150 7 0 6025 6174 333419401 333419550 8.260000e-59 239.0
12 TraesCS5D01G160400 chr5A 88.571 175 13 4 507 674 333413732 333413906 8.380000e-49 206.0
13 TraesCS5D01G160400 chr5A 91.870 123 7 2 6256 6378 333419549 333419668 1.100000e-37 169.0
14 TraesCS5D01G160400 chr5A 89.062 128 14 0 1155 1282 693447538 693447411 6.620000e-35 159.0
15 TraesCS5D01G160400 chr5A 94.845 97 5 0 3064 3160 13410013 13409917 1.110000e-32 152.0
16 TraesCS5D01G160400 chr5B 95.047 2423 71 12 668 3067 283014832 283017228 0.000000e+00 3764.0
17 TraesCS5D01G160400 chr5B 96.487 1224 24 8 4474 5692 283018716 283019925 0.000000e+00 2004.0
18 TraesCS5D01G160400 chr5B 96.269 536 10 4 3147 3673 283017231 283017765 0.000000e+00 870.0
19 TraesCS5D01G160400 chr5B 95.796 452 13 3 3834 4279 283017764 283018215 0.000000e+00 725.0
20 TraesCS5D01G160400 chr5B 88.636 396 21 6 3 388 283014190 283014571 1.620000e-125 460.0
21 TraesCS5D01G160400 chr5B 92.019 213 15 2 4265 4475 283018423 283018635 1.340000e-76 298.0
22 TraesCS5D01G160400 chr5B 89.048 210 13 7 474 673 283014597 283014806 1.060000e-62 252.0
23 TraesCS5D01G160400 chr5B 97.753 89 2 0 6173 6261 503528925 503529013 3.080000e-33 154.0
24 TraesCS5D01G160400 chr5B 93.204 103 4 1 3056 3155 278011865 278011967 1.430000e-31 148.0
25 TraesCS5D01G160400 chr3D 98.824 170 2 0 3670 3839 513620194 513620363 2.890000e-78 303.0
26 TraesCS5D01G160400 chr3D 98.235 170 3 0 3670 3839 23084843 23085012 1.340000e-76 298.0
27 TraesCS5D01G160400 chrUn 99.398 166 1 0 3672 3837 95257973 95258138 1.040000e-77 302.0
28 TraesCS5D01G160400 chrUn 93.151 73 5 0 1155 1227 99866565 99866637 2.430000e-19 108.0
29 TraesCS5D01G160400 chrUn 93.182 44 3 0 1060 1103 99866512 99866555 1.480000e-06 65.8
30 TraesCS5D01G160400 chrUn 97.059 34 1 0 1249 1282 99866640 99866673 2.480000e-04 58.4
31 TraesCS5D01G160400 chr4D 98.256 172 3 0 3664 3835 211346688 211346859 1.040000e-77 302.0
32 TraesCS5D01G160400 chr4D 88.636 88 8 2 1445 1531 153908991 153909077 8.750000e-19 106.0
33 TraesCS5D01G160400 chr4D 93.478 46 3 0 1451 1496 153908898 153908943 1.150000e-07 69.4
34 TraesCS5D01G160400 chr4D 92.683 41 3 0 1242 1282 153908941 153908981 6.910000e-05 60.2
35 TraesCS5D01G160400 chr1D 98.817 169 1 1 3671 3838 310246928 310247096 3.740000e-77 300.0
36 TraesCS5D01G160400 chr1D 98.788 165 2 0 3672 3836 391279225 391279061 1.740000e-75 294.0
37 TraesCS5D01G160400 chr6D 99.390 164 1 0 3672 3835 8674653 8674490 1.340000e-76 298.0
38 TraesCS5D01G160400 chr1A 93.956 182 11 0 1101 1282 490410854 490410673 6.300000e-70 276.0
39 TraesCS5D01G160400 chr7D 85.036 274 23 7 1655 1910 587991848 587991575 4.900000e-66 263.0
40 TraesCS5D01G160400 chr7D 96.809 94 3 0 3064 3157 519264632 519264539 2.380000e-34 158.0
41 TraesCS5D01G160400 chr7D 95.833 96 3 1 3061 3155 79628434 79628339 3.080000e-33 154.0
42 TraesCS5D01G160400 chr7D 95.833 96 3 1 3066 3160 485090878 485090973 3.080000e-33 154.0
43 TraesCS5D01G160400 chr7D 95.745 94 4 0 6172 6265 463109129 463109036 1.110000e-32 152.0
44 TraesCS5D01G160400 chr7D 90.598 117 5 6 3066 3179 529689689 529689576 3.980000e-32 150.0
45 TraesCS5D01G160400 chr6B 86.404 228 19 3 1055 1282 96452476 96452691 8.260000e-59 239.0
46 TraesCS5D01G160400 chr6B 95.745 94 4 0 3057 3150 216509749 216509842 1.110000e-32 152.0
47 TraesCS5D01G160400 chr6B 94.186 86 5 0 1431 1516 96452699 96452784 1.440000e-26 132.0
48 TraesCS5D01G160400 chr6B 91.803 61 5 0 2013 2073 696002692 696002632 1.140000e-12 86.1
49 TraesCS5D01G160400 chr3B 98.864 88 1 0 6173 6260 76468602 76468515 2.380000e-34 158.0
50 TraesCS5D01G160400 chr7A 96.774 93 3 0 6173 6265 639595034 639594942 8.560000e-34 156.0
51 TraesCS5D01G160400 chr7A 94.915 59 3 0 2011 2069 509222374 509222432 6.810000e-15 93.5
52 TraesCS5D01G160400 chr3A 97.778 90 2 0 6172 6261 16809188 16809099 8.560000e-34 156.0
53 TraesCS5D01G160400 chr6A 94.845 97 5 0 3066 3162 610350314 610350218 1.110000e-32 152.0
54 TraesCS5D01G160400 chr2A 95.699 93 4 0 6173 6265 71560834 71560742 3.980000e-32 150.0
55 TraesCS5D01G160400 chr4B 94.792 96 4 1 6162 6257 500839958 500840052 1.430000e-31 148.0
56 TraesCS5D01G160400 chr4B 94.737 57 3 0 2013 2069 41531422 41531478 8.810000e-14 89.8
57 TraesCS5D01G160400 chr4A 94.521 73 4 0 1155 1227 99037206 99037134 5.230000e-21 113.0
58 TraesCS5D01G160400 chr4A 92.188 64 4 1 2007 2069 467263410 467263347 8.810000e-14 89.8
59 TraesCS5D01G160400 chr4A 92.188 64 2 2 2007 2069 429231266 429231205 3.170000e-13 87.9
60 TraesCS5D01G160400 chr2B 90.244 82 8 0 1201 1282 82360297 82360378 2.430000e-19 108.0
61 TraesCS5D01G160400 chr2B 93.333 60 3 1 2011 2069 39971085 39971026 3.170000e-13 87.9
62 TraesCS5D01G160400 chr1B 93.220 59 4 0 2011 2069 156850440 156850382 3.170000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G160400 chr5D 250066563 250072940 6377 False 11779.000000 11779 100.000000 1 6378 1 chr5D.!!$F2 6377
1 TraesCS5D01G160400 chr5A 333413047 333419668 6621 False 1364.285714 4830 92.432714 8 6378 7 chr5A.!!$F1 6370
2 TraesCS5D01G160400 chr5B 283014190 283019925 5735 False 1196.142857 3764 93.328857 3 5692 7 chr5B.!!$F3 5689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 318 0.034670 AGGAGCAGTTGGATCTTGGC 60.035 55.0 0.00 0.0 30.93 4.52 F
402 427 0.182299 TCACTGGTTGTGTGCATGGA 59.818 50.0 0.00 0.0 46.27 3.41 F
1563 1900 0.462047 CTGGCCAGGACGGTGTAATC 60.462 60.0 26.14 0.0 36.97 1.75 F
2221 2564 1.079503 GTCTTTTAGGCCTGTGAGCG 58.920 55.0 17.99 0.0 0.00 5.03 F
3685 4037 0.683504 TCTGCTACTCCCTCCGTTCC 60.684 60.0 0.00 0.0 0.00 3.62 F
4328 5060 0.038166 TTGGCATTGAGTCTGGACCC 59.962 55.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2564 0.947180 TCAACGAGGGCGCAAGTAAC 60.947 55.000 10.83 0.0 42.48 2.50 R
2336 2679 3.716872 ACCATTAGATTACCCTGGACCTG 59.283 47.826 0.00 0.0 0.00 4.00 R
2736 3079 1.556911 TCCTTCTGCTCCATCAAGGAC 59.443 52.381 0.00 0.0 43.07 3.85 R
3715 4067 0.901827 ACATCCGTATGTGGCAGTCA 59.098 50.000 0.00 0.0 44.79 3.41 R
5013 5832 0.893270 ATGCTGTGCCGCCTACAAAA 60.893 50.000 0.00 0.0 0.00 2.44 R
5879 6702 0.178964 ACTTAGGCAAGGCAAGGCAA 60.179 50.000 5.62 0.0 35.97 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.986050 AGTATATACTGGGGTGGGGTG 58.014 52.381 14.71 0.00 34.72 4.61
77 78 1.982958 GTATATACTGGGGTGGGGTGG 59.017 57.143 5.58 0.00 0.00 4.61
78 79 0.402861 ATATACTGGGGTGGGGTGGG 60.403 60.000 0.00 0.00 0.00 4.61
79 80 2.570978 TATACTGGGGTGGGGTGGGG 62.571 65.000 0.00 0.00 0.00 4.96
121 122 7.093814 TGACAGGAATAAATGTTTCATTCTGGG 60.094 37.037 10.53 0.00 0.00 4.45
127 128 1.909700 TGTTTCATTCTGGGACTGCC 58.090 50.000 0.00 0.00 0.00 4.85
160 175 0.035176 CTGGCATGGTTTGGTTTGGG 59.965 55.000 0.00 0.00 0.00 4.12
161 176 0.399091 TGGCATGGTTTGGTTTGGGA 60.399 50.000 0.00 0.00 0.00 4.37
162 177 0.761802 GGCATGGTTTGGTTTGGGAA 59.238 50.000 0.00 0.00 0.00 3.97
163 178 1.141858 GGCATGGTTTGGTTTGGGAAA 59.858 47.619 0.00 0.00 0.00 3.13
164 179 2.422093 GGCATGGTTTGGTTTGGGAAAA 60.422 45.455 0.00 0.00 0.00 2.29
168 192 5.675538 CATGGTTTGGTTTGGGAAAAGTTA 58.324 37.500 0.00 0.00 0.00 2.24
230 254 3.192633 TGCTGCTGTTATCGTCAGTCTTA 59.807 43.478 0.00 0.00 35.60 2.10
231 255 4.142160 TGCTGCTGTTATCGTCAGTCTTAT 60.142 41.667 0.00 0.00 35.60 1.73
232 256 4.442733 GCTGCTGTTATCGTCAGTCTTATC 59.557 45.833 0.00 0.00 35.60 1.75
233 257 4.933330 TGCTGTTATCGTCAGTCTTATCC 58.067 43.478 0.00 0.00 35.60 2.59
234 258 4.401202 TGCTGTTATCGTCAGTCTTATCCA 59.599 41.667 0.00 0.00 35.60 3.41
235 259 5.069119 TGCTGTTATCGTCAGTCTTATCCAT 59.931 40.000 0.00 0.00 35.60 3.41
236 260 5.986135 GCTGTTATCGTCAGTCTTATCCATT 59.014 40.000 0.00 0.00 35.60 3.16
237 261 6.480320 GCTGTTATCGTCAGTCTTATCCATTT 59.520 38.462 0.00 0.00 35.60 2.32
238 262 7.011482 GCTGTTATCGTCAGTCTTATCCATTTT 59.989 37.037 0.00 0.00 35.60 1.82
256 280 4.519540 TTTTTGCTGATAGAACCAAGGC 57.480 40.909 0.00 0.00 0.00 4.35
294 318 0.034670 AGGAGCAGTTGGATCTTGGC 60.035 55.000 0.00 0.00 30.93 4.52
305 329 4.170468 TGGATCTTGGCTATCCTTTTCC 57.830 45.455 12.97 0.00 42.94 3.13
337 362 2.250921 TCATTGGTGGCATGGGAAAT 57.749 45.000 0.00 0.00 0.00 2.17
339 364 1.832366 CATTGGTGGCATGGGAAATGA 59.168 47.619 0.00 0.00 0.00 2.57
399 424 2.555325 CAAGATCACTGGTTGTGTGCAT 59.445 45.455 0.00 0.00 46.27 3.96
400 425 2.156917 AGATCACTGGTTGTGTGCATG 58.843 47.619 0.00 0.00 46.27 4.06
401 426 1.200716 GATCACTGGTTGTGTGCATGG 59.799 52.381 0.00 0.00 46.27 3.66
402 427 0.182299 TCACTGGTTGTGTGCATGGA 59.818 50.000 0.00 0.00 46.27 3.41
403 428 1.031235 CACTGGTTGTGTGCATGGAA 58.969 50.000 0.00 0.00 41.53 3.53
404 429 1.614903 CACTGGTTGTGTGCATGGAAT 59.385 47.619 0.00 0.00 41.53 3.01
405 430 2.819019 CACTGGTTGTGTGCATGGAATA 59.181 45.455 0.00 0.00 41.53 1.75
407 432 3.084039 CTGGTTGTGTGCATGGAATAGT 58.916 45.455 0.00 0.00 0.00 2.12
417 442 7.557358 TGTGTGCATGGAATAGTTATCTTTCAT 59.443 33.333 0.00 0.00 0.00 2.57
418 443 9.056005 GTGTGCATGGAATAGTTATCTTTCATA 57.944 33.333 0.00 0.00 0.00 2.15
466 732 8.742125 AGGTTACTCCTTCCATATCATATCAA 57.258 34.615 0.00 0.00 45.67 2.57
467 733 9.170890 AGGTTACTCCTTCCATATCATATCAAA 57.829 33.333 0.00 0.00 45.67 2.69
468 734 9.793259 GGTTACTCCTTCCATATCATATCAAAA 57.207 33.333 0.00 0.00 0.00 2.44
476 742 8.862325 TTCCATATCATATCAAAATAGGCGTT 57.138 30.769 0.00 0.00 0.00 4.84
479 745 9.559958 CCATATCATATCAAAATAGGCGTTTTC 57.440 33.333 1.50 0.00 0.00 2.29
495 761 5.008712 GGCGTTTTCTATTTTGATAGGGAGG 59.991 44.000 0.00 0.00 0.00 4.30
505 771 3.176924 TGATAGGGAGGGAGTATCTGC 57.823 52.381 0.00 0.00 33.73 4.26
603 879 1.955778 CACACAATTCAGAGTGGCCAA 59.044 47.619 7.24 0.00 39.99 4.52
1563 1900 0.462047 CTGGCCAGGACGGTGTAATC 60.462 60.000 26.14 0.00 36.97 1.75
1709 2046 1.203523 ACTGACGGAGCTGATTGAGTC 59.796 52.381 0.00 0.00 0.00 3.36
1746 2083 1.728971 GGCAGATTGTCGACTTCAGTG 59.271 52.381 17.92 8.86 0.00 3.66
1822 2159 7.755822 GGTATGCAGAAATCGAAGGTATAGTAG 59.244 40.741 0.00 0.00 0.00 2.57
1904 2243 5.288712 GCTGATGATTTGCATTTGTCAGAAG 59.711 40.000 16.14 8.55 37.34 2.85
1978 2317 4.074970 ACAGAGAATTGCCGAATGAAACT 58.925 39.130 0.00 0.00 0.00 2.66
1979 2318 4.083110 ACAGAGAATTGCCGAATGAAACTG 60.083 41.667 0.00 0.00 0.00 3.16
2004 2343 7.333423 TGCTGTAGGATAACTGTTGAAATGTAC 59.667 37.037 2.69 0.00 0.00 2.90
2005 2344 7.549488 GCTGTAGGATAACTGTTGAAATGTACT 59.451 37.037 2.69 0.00 0.00 2.73
2016 2355 9.476928 ACTGTTGAAATGTACTACTATACCTCT 57.523 33.333 0.00 0.00 0.00 3.69
2108 2451 5.357742 TTCTATCAGCCTGAACTGCATAA 57.642 39.130 0.00 0.00 37.59 1.90
2138 2481 8.206867 TCTTATTCACATAGATGACCTTCCAAG 58.793 37.037 0.00 0.00 0.00 3.61
2170 2513 6.641169 TGAGGATCTGTGCTAATAGTGTAG 57.359 41.667 0.00 0.00 34.92 2.74
2221 2564 1.079503 GTCTTTTAGGCCTGTGAGCG 58.920 55.000 17.99 0.00 0.00 5.03
2279 2622 8.507249 GTGATAGTTCCATCATATTGCTTTACC 58.493 37.037 0.00 0.00 37.28 2.85
2336 2679 4.810191 TCCTTTAGAGCAAGACTTCTCC 57.190 45.455 9.63 0.00 0.00 3.71
2337 2680 4.160329 TCCTTTAGAGCAAGACTTCTCCA 58.840 43.478 9.63 0.00 0.00 3.86
2338 2681 4.221703 TCCTTTAGAGCAAGACTTCTCCAG 59.778 45.833 9.63 5.67 0.00 3.86
2339 2682 4.502962 CTTTAGAGCAAGACTTCTCCAGG 58.497 47.826 9.63 0.00 0.00 4.45
2340 2683 2.022718 AGAGCAAGACTTCTCCAGGT 57.977 50.000 9.63 0.00 0.00 4.00
2341 2684 1.899142 AGAGCAAGACTTCTCCAGGTC 59.101 52.381 9.63 3.35 0.00 3.85
2476 2819 5.414360 TGCTGCTGAAATCTTACTAGTGAG 58.586 41.667 8.34 8.34 0.00 3.51
2500 2843 9.665264 GAGAACGTTCATTTGTTATTCTTTTCT 57.335 29.630 28.78 2.13 0.00 2.52
2521 2864 8.420374 TTTCTAAATGAATAGCGGTAACTCTG 57.580 34.615 0.00 0.00 34.24 3.35
2637 2980 4.534103 ACCCTAGAAGATCTTGAAGTTGCT 59.466 41.667 14.00 4.26 0.00 3.91
2736 3079 4.022416 TCGATTGGGTGGAAACAATTTCTG 60.022 41.667 1.62 0.00 46.06 3.02
2823 3166 1.734465 GGGACGCTTCACAAGAATCAG 59.266 52.381 0.00 0.00 32.31 2.90
2826 3169 3.686726 GGACGCTTCACAAGAATCAGATT 59.313 43.478 0.00 0.00 32.31 2.40
3091 3434 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3092 3435 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3402 3745 8.807581 CATTCACCTTTCAGTTAAAACAAGTTC 58.192 33.333 0.00 0.00 0.00 3.01
3683 4035 2.750141 TATCTGCTACTCCCTCCGTT 57.250 50.000 0.00 0.00 0.00 4.44
3685 4037 0.683504 TCTGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
3686 4038 0.684805 CTGCTACTCCCTCCGTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
3692 4044 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
3698 4050 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3700 4052 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3701 4053 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3702 4054 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3704 4056 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3705 4057 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3721 4073 7.810658 TCTTTCTAGACATTTCAAATGACTGC 58.189 34.615 21.01 7.02 0.00 4.40
3722 4074 6.500684 TTCTAGACATTTCAAATGACTGCC 57.499 37.500 21.01 4.82 0.00 4.85
3723 4075 5.559770 TCTAGACATTTCAAATGACTGCCA 58.440 37.500 21.01 4.81 0.00 4.92
3724 4076 4.510038 AGACATTTCAAATGACTGCCAC 57.490 40.909 17.30 0.12 0.00 5.01
3725 4077 3.890756 AGACATTTCAAATGACTGCCACA 59.109 39.130 17.30 0.00 0.00 4.17
3726 4078 4.525487 AGACATTTCAAATGACTGCCACAT 59.475 37.500 17.30 0.00 0.00 3.21
3727 4079 5.711506 AGACATTTCAAATGACTGCCACATA 59.288 36.000 17.30 0.00 0.00 2.29
3728 4080 5.713025 ACATTTCAAATGACTGCCACATAC 58.287 37.500 17.30 0.00 0.00 2.39
3774 4126 5.220710 AGTGTAGATTCACTCAGTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
3775 4127 5.233988 AGTGTAGATTCACTCAGTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
3776 4128 4.390297 GTGTAGATTCACTCAGTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
3778 4130 2.037772 AGATTCACTCAGTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
3779 4131 3.258372 AGATTCACTCAGTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
3780 4132 3.678056 TTCACTCAGTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
3781 4133 2.959516 TCACTCAGTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
3782 4134 2.299013 TCACTCAGTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
3784 4136 3.859961 CACTCAGTTTGCTCCGTATGTAG 59.140 47.826 0.00 0.00 0.00 2.74
3785 4137 3.510360 ACTCAGTTTGCTCCGTATGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
3788 4140 3.612860 CAGTTTGCTCCGTATGTAGTCAC 59.387 47.826 0.00 0.00 0.00 3.67
3789 4141 3.510360 AGTTTGCTCCGTATGTAGTCACT 59.490 43.478 0.00 0.00 0.00 3.41
3790 4142 4.021368 AGTTTGCTCCGTATGTAGTCACTT 60.021 41.667 0.00 0.00 0.00 3.16
3791 4143 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3792 4144 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3793 4145 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3795 4147 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3796 4148 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3797 4149 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3800 4152 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
3801 4153 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
3802 4154 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
3805 4157 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
3806 4158 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
3819 4323 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3822 4326 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4328 5060 0.038166 TTGGCATTGAGTCTGGACCC 59.962 55.000 0.00 0.00 0.00 4.46
4445 5180 5.372343 AAGCCATCATGTATAGAACCACA 57.628 39.130 0.00 0.00 0.00 4.17
4448 5183 6.000219 AGCCATCATGTATAGAACCACATTC 59.000 40.000 0.00 0.00 33.12 2.67
4536 5355 5.586643 AGGATATTGGCGAAAAGAAAGAGTC 59.413 40.000 0.00 0.00 0.00 3.36
5013 5832 1.062734 ACCAATCATCATGCCCATGGT 60.063 47.619 11.73 0.00 39.24 3.55
5317 6136 0.179034 AGAAGGCCATGATCGAAGCC 60.179 55.000 5.01 10.81 46.13 4.35
5385 6204 2.200373 TCGAGAGGATGACAGACACA 57.800 50.000 0.00 0.00 0.00 3.72
5391 6210 3.837146 AGAGGATGACAGACACACTCAAT 59.163 43.478 7.89 0.00 37.19 2.57
5417 6236 0.770557 TGGGTTGGCTGGTTACCTCT 60.771 55.000 2.07 0.00 32.46 3.69
5418 6237 0.322546 GGGTTGGCTGGTTACCTCTG 60.323 60.000 2.07 0.00 32.46 3.35
5671 6494 2.368548 TCCTGCAGAGCTTACTTTCACA 59.631 45.455 17.39 0.00 0.00 3.58
5673 6496 3.755378 CCTGCAGAGCTTACTTTCACATT 59.245 43.478 17.39 0.00 0.00 2.71
5675 6498 4.388485 TGCAGAGCTTACTTTCACATTCA 58.612 39.130 0.00 0.00 0.00 2.57
5676 6499 4.214119 TGCAGAGCTTACTTTCACATTCAC 59.786 41.667 0.00 0.00 0.00 3.18
5694 6517 1.338020 CACCTGTGCTTTTCTTGTCCC 59.662 52.381 0.00 0.00 0.00 4.46
5695 6518 1.064017 ACCTGTGCTTTTCTTGTCCCA 60.064 47.619 0.00 0.00 0.00 4.37
5771 6594 3.243602 ACAACAACAAAAATACCGGAGCC 60.244 43.478 9.46 0.00 0.00 4.70
5774 6597 2.556622 CAACAAAAATACCGGAGCCAGT 59.443 45.455 9.46 0.00 0.00 4.00
5802 6625 1.270785 TGGGCATGTGCATACTATCCG 60.271 52.381 7.36 0.00 44.36 4.18
5808 6631 4.082733 GCATGTGCATACTATCCGAGAGTA 60.083 45.833 5.38 5.38 41.59 2.59
5810 6633 5.881777 TGTGCATACTATCCGAGAGTATC 57.118 43.478 11.92 8.48 37.91 2.24
5811 6634 5.313712 TGTGCATACTATCCGAGAGTATCA 58.686 41.667 11.92 10.45 37.91 2.15
5812 6635 5.946377 TGTGCATACTATCCGAGAGTATCAT 59.054 40.000 11.92 0.00 37.91 2.45
5813 6636 7.110155 TGTGCATACTATCCGAGAGTATCATA 58.890 38.462 11.92 9.20 37.91 2.15
5845 6668 7.976135 AATATCACTGATCAAGAACATAGGC 57.024 36.000 0.00 0.00 0.00 3.93
5846 6669 4.142609 TCACTGATCAAGAACATAGGCC 57.857 45.455 0.00 0.00 0.00 5.19
5847 6670 3.519107 TCACTGATCAAGAACATAGGCCA 59.481 43.478 5.01 0.00 0.00 5.36
5848 6671 4.164796 TCACTGATCAAGAACATAGGCCAT 59.835 41.667 5.01 0.00 0.00 4.40
5849 6672 4.275196 CACTGATCAAGAACATAGGCCATG 59.725 45.833 5.01 9.62 40.78 3.66
5858 6681 3.317603 ACATAGGCCATGTGCAAAAAC 57.682 42.857 16.85 0.00 46.41 2.43
5859 6682 2.028203 ACATAGGCCATGTGCAAAAACC 60.028 45.455 16.85 0.00 46.41 3.27
5860 6683 1.709578 TAGGCCATGTGCAAAAACCA 58.290 45.000 5.01 0.00 43.89 3.67
5861 6684 0.835941 AGGCCATGTGCAAAAACCAA 59.164 45.000 5.01 0.00 43.89 3.67
5862 6685 0.943673 GGCCATGTGCAAAAACCAAC 59.056 50.000 0.00 0.00 43.89 3.77
5863 6686 0.581053 GCCATGTGCAAAAACCAACG 59.419 50.000 0.00 0.00 40.77 4.10
5864 6687 1.933247 CCATGTGCAAAAACCAACGT 58.067 45.000 0.00 0.00 0.00 3.99
5865 6688 2.275318 CCATGTGCAAAAACCAACGTT 58.725 42.857 0.00 0.00 0.00 3.99
5866 6689 2.283884 CCATGTGCAAAAACCAACGTTC 59.716 45.455 0.00 0.00 0.00 3.95
5867 6690 2.724977 TGTGCAAAAACCAACGTTCA 57.275 40.000 0.00 0.00 0.00 3.18
5868 6691 2.329379 TGTGCAAAAACCAACGTTCAC 58.671 42.857 0.00 1.39 0.00 3.18
5869 6692 2.029828 TGTGCAAAAACCAACGTTCACT 60.030 40.909 0.00 0.00 29.04 3.41
5870 6693 2.596862 GTGCAAAAACCAACGTTCACTC 59.403 45.455 0.00 0.00 0.00 3.51
5871 6694 2.229062 TGCAAAAACCAACGTTCACTCA 59.771 40.909 0.00 0.00 0.00 3.41
5872 6695 3.119316 TGCAAAAACCAACGTTCACTCAT 60.119 39.130 0.00 0.00 0.00 2.90
5873 6696 4.096532 TGCAAAAACCAACGTTCACTCATA 59.903 37.500 0.00 0.00 0.00 2.15
5874 6697 4.439776 GCAAAAACCAACGTTCACTCATAC 59.560 41.667 0.00 0.00 0.00 2.39
5875 6698 5.732247 GCAAAAACCAACGTTCACTCATACT 60.732 40.000 0.00 0.00 0.00 2.12
5876 6699 6.512091 GCAAAAACCAACGTTCACTCATACTA 60.512 38.462 0.00 0.00 0.00 1.82
5877 6700 7.411274 CAAAAACCAACGTTCACTCATACTAA 58.589 34.615 0.00 0.00 0.00 2.24
5878 6701 7.739498 AAAACCAACGTTCACTCATACTAAT 57.261 32.000 0.00 0.00 0.00 1.73
5879 6702 7.739498 AAACCAACGTTCACTCATACTAATT 57.261 32.000 0.00 0.00 0.00 1.40
5880 6703 7.739498 AACCAACGTTCACTCATACTAATTT 57.261 32.000 0.00 0.00 0.00 1.82
5881 6704 7.129109 ACCAACGTTCACTCATACTAATTTG 57.871 36.000 0.00 0.00 0.00 2.32
5882 6705 6.021596 CCAACGTTCACTCATACTAATTTGC 58.978 40.000 0.00 0.00 0.00 3.68
5883 6706 5.796350 ACGTTCACTCATACTAATTTGCC 57.204 39.130 0.00 0.00 0.00 4.52
5884 6707 5.488341 ACGTTCACTCATACTAATTTGCCT 58.512 37.500 0.00 0.00 0.00 4.75
5885 6708 5.938125 ACGTTCACTCATACTAATTTGCCTT 59.062 36.000 0.00 0.00 0.00 4.35
5886 6709 6.128282 ACGTTCACTCATACTAATTTGCCTTG 60.128 38.462 0.00 0.00 0.00 3.61
5887 6710 5.818136 TCACTCATACTAATTTGCCTTGC 57.182 39.130 0.00 0.00 0.00 4.01
5888 6711 4.640201 TCACTCATACTAATTTGCCTTGCC 59.360 41.667 0.00 0.00 0.00 4.52
5889 6712 4.641989 CACTCATACTAATTTGCCTTGCCT 59.358 41.667 0.00 0.00 0.00 4.75
5890 6713 5.126061 CACTCATACTAATTTGCCTTGCCTT 59.874 40.000 0.00 0.00 0.00 4.35
5891 6714 5.126061 ACTCATACTAATTTGCCTTGCCTTG 59.874 40.000 0.00 0.00 0.00 3.61
5892 6715 2.749280 ACTAATTTGCCTTGCCTTGC 57.251 45.000 0.00 0.00 0.00 4.01
5893 6716 1.276138 ACTAATTTGCCTTGCCTTGCC 59.724 47.619 0.00 0.00 0.00 4.52
5894 6717 1.551883 CTAATTTGCCTTGCCTTGCCT 59.448 47.619 0.00 0.00 0.00 4.75
5895 6718 1.643310 AATTTGCCTTGCCTTGCCTA 58.357 45.000 0.00 0.00 0.00 3.93
5896 6719 1.643310 ATTTGCCTTGCCTTGCCTAA 58.357 45.000 0.00 0.00 0.00 2.69
5897 6720 0.968405 TTTGCCTTGCCTTGCCTAAG 59.032 50.000 0.00 0.00 0.00 2.18
5898 6721 0.178964 TTGCCTTGCCTTGCCTAAGT 60.179 50.000 0.00 0.00 31.80 2.24
5899 6722 0.178964 TGCCTTGCCTTGCCTAAGTT 60.179 50.000 0.00 0.00 31.80 2.66
5900 6723 0.528017 GCCTTGCCTTGCCTAAGTTC 59.472 55.000 0.00 0.00 31.80 3.01
5901 6724 1.909700 CCTTGCCTTGCCTAAGTTCA 58.090 50.000 0.00 0.00 31.80 3.18
5902 6725 2.450476 CCTTGCCTTGCCTAAGTTCAT 58.550 47.619 0.00 0.00 31.80 2.57
5903 6726 2.165030 CCTTGCCTTGCCTAAGTTCATG 59.835 50.000 0.00 0.00 31.80 3.07
5904 6727 2.584835 TGCCTTGCCTAAGTTCATGT 57.415 45.000 0.00 0.00 31.80 3.21
5905 6728 2.161855 TGCCTTGCCTAAGTTCATGTG 58.838 47.619 0.00 0.00 31.80 3.21
5906 6729 1.135286 GCCTTGCCTAAGTTCATGTGC 60.135 52.381 0.00 0.00 31.80 4.57
5907 6730 1.131126 CCTTGCCTAAGTTCATGTGCG 59.869 52.381 0.00 0.00 31.80 5.34
5908 6731 0.521291 TTGCCTAAGTTCATGTGCGC 59.479 50.000 0.00 0.00 0.00 6.09
5963 6786 4.907582 ACTAAACGCAAACGCAAATAGAAC 59.092 37.500 0.00 0.00 45.53 3.01
5987 6810 5.978322 CGGTAGGAGATTCTGCTTAACTAAC 59.022 44.000 13.25 4.21 33.39 2.34
6031 6854 5.642686 CAGAAGTACTGGACTAGTTGTAGC 58.357 45.833 0.00 0.00 42.39 3.58
6044 6867 8.035984 GGACTAGTTGTAGCTGTAGAAATTTCT 58.964 37.037 23.53 23.53 41.24 2.52
6077 6963 0.533755 CCATGACGAGGAAGATGCCC 60.534 60.000 0.00 0.00 0.00 5.36
6174 7060 3.118592 AGTGTTGGCCTTCTCTAGCATAC 60.119 47.826 3.32 0.00 0.00 2.39
6175 7061 3.107601 TGTTGGCCTTCTCTAGCATACT 58.892 45.455 3.32 0.00 0.00 2.12
6176 7062 3.133003 TGTTGGCCTTCTCTAGCATACTC 59.867 47.826 3.32 0.00 0.00 2.59
6177 7063 2.320781 TGGCCTTCTCTAGCATACTCC 58.679 52.381 3.32 0.00 0.00 3.85
6178 7064 1.621317 GGCCTTCTCTAGCATACTCCC 59.379 57.143 0.00 0.00 0.00 4.30
6179 7065 2.604139 GCCTTCTCTAGCATACTCCCT 58.396 52.381 0.00 0.00 0.00 4.20
6180 7066 2.560981 GCCTTCTCTAGCATACTCCCTC 59.439 54.545 0.00 0.00 0.00 4.30
6181 7067 3.753846 GCCTTCTCTAGCATACTCCCTCT 60.754 52.174 0.00 0.00 0.00 3.69
6182 7068 3.826157 CCTTCTCTAGCATACTCCCTCTG 59.174 52.174 0.00 0.00 0.00 3.35
6183 7069 4.469657 CTTCTCTAGCATACTCCCTCTGT 58.530 47.826 0.00 0.00 0.00 3.41
6184 7070 4.093472 TCTCTAGCATACTCCCTCTGTC 57.907 50.000 0.00 0.00 0.00 3.51
6185 7071 3.153919 CTCTAGCATACTCCCTCTGTCC 58.846 54.545 0.00 0.00 0.00 4.02
6186 7072 2.158445 TCTAGCATACTCCCTCTGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
6187 7073 0.339859 AGCATACTCCCTCTGTCCCA 59.660 55.000 0.00 0.00 0.00 4.37
6188 7074 1.204146 GCATACTCCCTCTGTCCCAA 58.796 55.000 0.00 0.00 0.00 4.12
6189 7075 1.559682 GCATACTCCCTCTGTCCCAAA 59.440 52.381 0.00 0.00 0.00 3.28
6190 7076 2.026262 GCATACTCCCTCTGTCCCAAAA 60.026 50.000 0.00 0.00 0.00 2.44
6191 7077 3.372025 GCATACTCCCTCTGTCCCAAAAT 60.372 47.826 0.00 0.00 0.00 1.82
6192 7078 4.141482 GCATACTCCCTCTGTCCCAAAATA 60.141 45.833 0.00 0.00 0.00 1.40
6193 7079 5.456763 GCATACTCCCTCTGTCCCAAAATAT 60.457 44.000 0.00 0.00 0.00 1.28
6194 7080 6.239887 GCATACTCCCTCTGTCCCAAAATATA 60.240 42.308 0.00 0.00 0.00 0.86
6195 7081 7.691791 GCATACTCCCTCTGTCCCAAAATATAA 60.692 40.741 0.00 0.00 0.00 0.98
6196 7082 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
6197 7083 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
6198 7084 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
6199 7085 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
6200 7086 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
6201 7087 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
6202 7088 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
6203 7089 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
6204 7090 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
6205 7091 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
6218 7104 9.887406 ATAAGAACGTTTTTAACACCACATTAG 57.113 29.630 14.41 0.00 0.00 1.73
6219 7105 7.324354 AGAACGTTTTTAACACCACATTAGT 57.676 32.000 0.46 0.00 0.00 2.24
6220 7106 7.190871 AGAACGTTTTTAACACCACATTAGTG 58.809 34.615 0.46 0.00 45.47 2.74
6227 7113 9.706691 TTTTTAACACCACATTAGTGTCAAAAA 57.293 25.926 11.78 11.78 45.97 1.94
6229 7115 4.915704 ACACCACATTAGTGTCAAAAACG 58.084 39.130 0.00 0.00 45.13 3.60
6230 7116 4.396790 ACACCACATTAGTGTCAAAAACGT 59.603 37.500 0.00 0.00 45.13 3.99
6231 7117 5.106078 ACACCACATTAGTGTCAAAAACGTT 60.106 36.000 0.00 0.00 45.13 3.99
6232 7118 5.454232 CACCACATTAGTGTCAAAAACGTTC 59.546 40.000 0.00 0.00 44.39 3.95
6233 7119 5.355910 ACCACATTAGTGTCAAAAACGTTCT 59.644 36.000 0.00 0.00 44.39 3.01
6234 7120 6.127842 ACCACATTAGTGTCAAAAACGTTCTT 60.128 34.615 0.00 0.00 44.39 2.52
6235 7121 7.066043 ACCACATTAGTGTCAAAAACGTTCTTA 59.934 33.333 0.00 0.00 44.39 2.10
6236 7122 8.073768 CCACATTAGTGTCAAAAACGTTCTTAT 58.926 33.333 0.00 0.00 44.39 1.73
6244 7130 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
6245 7131 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
6246 7132 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
6247 7133 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
6248 7134 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
6249 7135 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
6250 7136 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
6251 7137 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
6252 7138 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
6253 7139 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
6254 7140 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
6255 7141 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
6256 7142 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
6272 7158 5.337788 AGGGAGTAGTAATCATCCTCATCC 58.662 45.833 0.00 0.00 32.18 3.51
6297 7183 6.241645 TCATCGTAGTCATAGTCATCATCCT 58.758 40.000 0.00 0.00 0.00 3.24
6298 7184 6.372937 TCATCGTAGTCATAGTCATCATCCTC 59.627 42.308 0.00 0.00 0.00 3.71
6299 7185 5.621193 TCGTAGTCATAGTCATCATCCTCA 58.379 41.667 0.00 0.00 0.00 3.86
6300 7186 6.241645 TCGTAGTCATAGTCATCATCCTCAT 58.758 40.000 0.00 0.00 0.00 2.90
6301 7187 6.372937 TCGTAGTCATAGTCATCATCCTCATC 59.627 42.308 0.00 0.00 0.00 2.92
6302 7188 5.999205 AGTCATAGTCATCATCCTCATCC 57.001 43.478 0.00 0.00 0.00 3.51
6303 7189 5.653346 AGTCATAGTCATCATCCTCATCCT 58.347 41.667 0.00 0.00 0.00 3.24
6304 7190 5.716228 AGTCATAGTCATCATCCTCATCCTC 59.284 44.000 0.00 0.00 0.00 3.71
6305 7191 5.479724 GTCATAGTCATCATCCTCATCCTCA 59.520 44.000 0.00 0.00 0.00 3.86
6306 7192 6.154877 GTCATAGTCATCATCCTCATCCTCAT 59.845 42.308 0.00 0.00 0.00 2.90
6307 7193 6.380560 TCATAGTCATCATCCTCATCCTCATC 59.619 42.308 0.00 0.00 0.00 2.92
6308 7194 3.510753 AGTCATCATCCTCATCCTCATCG 59.489 47.826 0.00 0.00 0.00 3.84
6309 7195 3.257873 GTCATCATCCTCATCCTCATCGT 59.742 47.826 0.00 0.00 0.00 3.73
6310 7196 4.460731 GTCATCATCCTCATCCTCATCGTA 59.539 45.833 0.00 0.00 0.00 3.43
6311 7197 4.704057 TCATCATCCTCATCCTCATCGTAG 59.296 45.833 0.00 0.00 0.00 3.51
6312 7198 4.105754 TCATCCTCATCCTCATCGTAGT 57.894 45.455 0.00 0.00 0.00 2.73
6313 7199 4.075682 TCATCCTCATCCTCATCGTAGTC 58.924 47.826 0.00 0.00 0.00 2.59
6314 7200 3.577805 TCCTCATCCTCATCGTAGTCA 57.422 47.619 0.00 0.00 0.00 3.41
6315 7201 4.105754 TCCTCATCCTCATCGTAGTCAT 57.894 45.455 0.00 0.00 0.00 3.06
6316 7202 4.075682 TCCTCATCCTCATCGTAGTCATC 58.924 47.826 0.00 0.00 0.00 2.92
6317 7203 3.823304 CCTCATCCTCATCGTAGTCATCA 59.177 47.826 0.00 0.00 0.00 3.07
6332 7218 3.316308 AGTCATCATCATCGTCATCGTCA 59.684 43.478 0.00 0.00 38.33 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.917933 AGCACAGCAGACAACAGTTTA 58.082 42.857 0.00 0.00 0.00 2.01
1 2 1.755179 AGCACAGCAGACAACAGTTT 58.245 45.000 0.00 0.00 0.00 2.66
76 77 4.825085 TGTCACAAAAATCTTACTCACCCC 59.175 41.667 0.00 0.00 0.00 4.95
77 78 5.048713 CCTGTCACAAAAATCTTACTCACCC 60.049 44.000 0.00 0.00 0.00 4.61
78 79 5.763204 TCCTGTCACAAAAATCTTACTCACC 59.237 40.000 0.00 0.00 0.00 4.02
79 80 6.861065 TCCTGTCACAAAAATCTTACTCAC 57.139 37.500 0.00 0.00 0.00 3.51
80 81 9.567776 TTATTCCTGTCACAAAAATCTTACTCA 57.432 29.630 0.00 0.00 0.00 3.41
121 122 2.685897 AGAGTAGAGTTCATCGGCAGTC 59.314 50.000 0.00 0.00 0.00 3.51
127 128 3.379240 CATGCCAGAGTAGAGTTCATCG 58.621 50.000 0.00 0.00 0.00 3.84
160 175 3.069016 CCACCCCAACCAACTAACTTTTC 59.931 47.826 0.00 0.00 0.00 2.29
161 176 3.035363 CCACCCCAACCAACTAACTTTT 58.965 45.455 0.00 0.00 0.00 2.27
162 177 2.673258 CCACCCCAACCAACTAACTTT 58.327 47.619 0.00 0.00 0.00 2.66
163 178 1.756333 GCCACCCCAACCAACTAACTT 60.756 52.381 0.00 0.00 0.00 2.66
164 179 0.178973 GCCACCCCAACCAACTAACT 60.179 55.000 0.00 0.00 0.00 2.24
168 192 4.596585 CGGCCACCCCAACCAACT 62.597 66.667 2.24 0.00 0.00 3.16
197 221 1.079197 CAGCAGCATCCCACGTGTA 60.079 57.895 15.65 2.16 0.00 2.90
230 254 6.127253 CCTTGGTTCTATCAGCAAAAATGGAT 60.127 38.462 0.00 0.00 33.85 3.41
231 255 5.185635 CCTTGGTTCTATCAGCAAAAATGGA 59.814 40.000 0.00 0.00 33.85 3.41
232 256 5.413499 CCTTGGTTCTATCAGCAAAAATGG 58.587 41.667 0.00 0.00 33.85 3.16
233 257 4.866486 GCCTTGGTTCTATCAGCAAAAATG 59.134 41.667 0.00 0.00 33.85 2.32
234 258 4.081476 GGCCTTGGTTCTATCAGCAAAAAT 60.081 41.667 0.00 0.00 33.85 1.82
235 259 3.258123 GGCCTTGGTTCTATCAGCAAAAA 59.742 43.478 0.00 0.00 33.85 1.94
236 260 2.825532 GGCCTTGGTTCTATCAGCAAAA 59.174 45.455 0.00 0.00 33.85 2.44
237 261 2.446435 GGCCTTGGTTCTATCAGCAAA 58.554 47.619 0.00 0.00 33.85 3.68
238 262 1.678728 CGGCCTTGGTTCTATCAGCAA 60.679 52.381 0.00 0.00 33.21 3.91
294 318 7.397192 TGAATGGAAAGGAAAGGAAAAGGATAG 59.603 37.037 0.00 0.00 0.00 2.08
358 383 4.392921 TGTTCGATCTTGAGGAGGATTC 57.607 45.455 0.00 0.00 0.00 2.52
388 413 5.590259 AGATAACTATTCCATGCACACAACC 59.410 40.000 0.00 0.00 0.00 3.77
389 414 6.683974 AGATAACTATTCCATGCACACAAC 57.316 37.500 0.00 0.00 0.00 3.32
399 424 9.090103 AGGATCGTATGAAAGATAACTATTCCA 57.910 33.333 0.00 0.00 0.00 3.53
400 425 9.575783 GAGGATCGTATGAAAGATAACTATTCC 57.424 37.037 0.00 0.00 0.00 3.01
405 430 9.667107 TTTTTGAGGATCGTATGAAAGATAACT 57.333 29.630 0.00 0.00 38.61 2.24
442 708 9.793259 TTTTGATATGATATGGAAGGAGTAACC 57.207 33.333 0.00 0.00 39.35 2.85
447 713 9.118300 GCCTATTTTGATATGATATGGAAGGAG 57.882 37.037 0.00 0.00 0.00 3.69
448 714 7.770433 CGCCTATTTTGATATGATATGGAAGGA 59.230 37.037 0.00 0.00 0.00 3.36
449 715 7.554118 ACGCCTATTTTGATATGATATGGAAGG 59.446 37.037 0.00 0.00 0.00 3.46
450 716 8.498054 ACGCCTATTTTGATATGATATGGAAG 57.502 34.615 0.00 0.00 0.00 3.46
451 717 8.862325 AACGCCTATTTTGATATGATATGGAA 57.138 30.769 0.00 0.00 0.00 3.53
452 718 8.862325 AAACGCCTATTTTGATATGATATGGA 57.138 30.769 0.00 0.00 0.00 3.41
453 719 9.559958 GAAAACGCCTATTTTGATATGATATGG 57.440 33.333 0.00 0.00 31.90 2.74
466 732 8.630037 CCCTATCAAAATAGAAAACGCCTATTT 58.370 33.333 0.00 0.00 44.28 1.40
467 733 7.996644 TCCCTATCAAAATAGAAAACGCCTATT 59.003 33.333 0.00 0.00 37.63 1.73
468 734 7.514721 TCCCTATCAAAATAGAAAACGCCTAT 58.485 34.615 0.00 0.00 37.63 2.57
469 735 6.891388 TCCCTATCAAAATAGAAAACGCCTA 58.109 36.000 0.00 0.00 37.63 3.93
470 736 5.751586 TCCCTATCAAAATAGAAAACGCCT 58.248 37.500 0.00 0.00 37.63 5.52
471 737 5.008712 CCTCCCTATCAAAATAGAAAACGCC 59.991 44.000 0.00 0.00 37.63 5.68
472 738 5.008712 CCCTCCCTATCAAAATAGAAAACGC 59.991 44.000 0.00 0.00 37.63 4.84
476 742 8.814448 ATACTCCCTCCCTATCAAAATAGAAA 57.186 34.615 0.00 0.00 37.63 2.52
479 745 7.580495 GCAGATACTCCCTCCCTATCAAAATAG 60.580 44.444 0.00 0.00 35.56 1.73
490 756 0.689623 CATGGCAGATACTCCCTCCC 59.310 60.000 0.00 0.00 0.00 4.30
495 761 2.313172 CGCGCATGGCAGATACTCC 61.313 63.158 8.75 0.00 43.84 3.85
505 771 3.364565 GGTACAATAATTACCGCGCATGG 60.365 47.826 8.75 3.46 29.93 3.66
539 809 4.401022 TGCACATCTCCTCTCATGTTTTT 58.599 39.130 0.00 0.00 30.48 1.94
541 811 3.607741 CTGCACATCTCCTCTCATGTTT 58.392 45.455 0.00 0.00 30.48 2.83
542 812 2.680221 GCTGCACATCTCCTCTCATGTT 60.680 50.000 0.00 0.00 30.48 2.71
544 814 1.584175 GCTGCACATCTCCTCTCATG 58.416 55.000 0.00 0.00 0.00 3.07
551 821 3.200593 CAGCCGCTGCACATCTCC 61.201 66.667 7.61 0.00 41.13 3.71
553 823 2.745100 CACAGCCGCTGCACATCT 60.745 61.111 20.56 0.00 41.13 2.90
575 851 1.805943 TCTGAATTGTGTGTGATGCCG 59.194 47.619 0.00 0.00 0.00 5.69
603 879 3.907260 CTGGTGCTCGTGTGGCCAT 62.907 63.158 9.72 0.00 0.00 4.40
797 1107 1.273041 TGTTTCGATGAGGGGAGGAGA 60.273 52.381 0.00 0.00 0.00 3.71
876 1186 4.851179 GACGAATGGCGGTCCCCC 62.851 72.222 0.00 0.00 46.49 5.40
1053 1375 4.316823 AGGTGGAGGTGGGCGAGA 62.317 66.667 0.00 0.00 0.00 4.04
1554 1882 1.740285 CCTCTCCCCGATTACACCG 59.260 63.158 0.00 0.00 0.00 4.94
1557 1894 1.691482 CCTTCCCTCTCCCCGATTACA 60.691 57.143 0.00 0.00 0.00 2.41
1611 1948 4.404654 CGGCCGGCAAACTTCTGC 62.405 66.667 30.85 6.07 41.85 4.26
1822 2159 2.724358 CGTGTTGGAAAACGGCGC 60.724 61.111 6.90 0.00 36.17 6.53
1978 2317 6.237901 ACATTTCAACAGTTATCCTACAGCA 58.762 36.000 0.00 0.00 0.00 4.41
1979 2318 6.743575 ACATTTCAACAGTTATCCTACAGC 57.256 37.500 0.00 0.00 0.00 4.40
2047 2386 4.514066 CCAGACGTTTTTGTAGGCTAAACT 59.486 41.667 0.00 0.00 31.33 2.66
2049 2388 4.453751 ACCAGACGTTTTTGTAGGCTAAA 58.546 39.130 0.00 0.00 0.00 1.85
2095 2438 7.912250 GTGAATAAGACAATTATGCAGTTCAGG 59.088 37.037 0.00 0.00 0.00 3.86
2108 2451 9.553064 GAAGGTCATCTATGTGAATAAGACAAT 57.447 33.333 0.00 0.00 0.00 2.71
2221 2564 0.947180 TCAACGAGGGCGCAAGTAAC 60.947 55.000 10.83 0.00 42.48 2.50
2336 2679 3.716872 ACCATTAGATTACCCTGGACCTG 59.283 47.826 0.00 0.00 0.00 4.00
2337 2680 4.022359 ACCATTAGATTACCCTGGACCT 57.978 45.455 0.00 0.00 0.00 3.85
2338 2681 4.165372 TCAACCATTAGATTACCCTGGACC 59.835 45.833 0.00 0.00 0.00 4.46
2339 2682 5.130477 TCTCAACCATTAGATTACCCTGGAC 59.870 44.000 0.00 0.00 0.00 4.02
2340 2683 5.285401 TCTCAACCATTAGATTACCCTGGA 58.715 41.667 0.00 0.00 0.00 3.86
2341 2684 5.455326 CCTCTCAACCATTAGATTACCCTGG 60.455 48.000 0.00 0.00 0.00 4.45
2449 2792 7.492669 TCACTAGTAAGATTTCAGCAGCATTAC 59.507 37.037 0.00 0.00 0.00 1.89
2500 2843 5.054477 GCCAGAGTTACCGCTATTCATTTA 58.946 41.667 0.00 0.00 0.00 1.40
2521 2864 3.421844 AGAACTTAGGTGAAACATGGCC 58.578 45.455 0.00 0.00 39.98 5.36
2736 3079 1.556911 TCCTTCTGCTCCATCAAGGAC 59.443 52.381 0.00 0.00 43.07 3.85
2823 3166 5.918011 TGCACCTTTTAACGATTCAACAATC 59.082 36.000 0.00 0.00 35.86 2.67
2826 3169 4.261405 CCTGCACCTTTTAACGATTCAACA 60.261 41.667 0.00 0.00 0.00 3.33
3402 3745 2.749076 TGAATGAATGCTTTGGAGACCG 59.251 45.455 0.00 0.00 0.00 4.79
3464 3807 1.604278 GGCTTCAGTCACTTTGGTCAC 59.396 52.381 0.00 0.00 0.00 3.67
3698 4050 6.489700 TGGCAGTCATTTGAAATGTCTAGAAA 59.510 34.615 16.62 0.00 0.00 2.52
3700 4052 5.412594 GTGGCAGTCATTTGAAATGTCTAGA 59.587 40.000 16.62 0.00 0.00 2.43
3701 4053 5.181811 TGTGGCAGTCATTTGAAATGTCTAG 59.818 40.000 16.62 11.92 0.00 2.43
3702 4054 5.069318 TGTGGCAGTCATTTGAAATGTCTA 58.931 37.500 16.62 0.72 0.00 2.59
3704 4056 4.241590 TGTGGCAGTCATTTGAAATGTC 57.758 40.909 16.62 11.74 0.00 3.06
3705 4057 4.877378 ATGTGGCAGTCATTTGAAATGT 57.123 36.364 16.62 0.00 0.00 2.71
3706 4058 4.794762 CGTATGTGGCAGTCATTTGAAATG 59.205 41.667 11.54 11.54 0.00 2.32
3707 4059 4.142403 CCGTATGTGGCAGTCATTTGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
3708 4060 3.190327 CCGTATGTGGCAGTCATTTGAAA 59.810 43.478 0.00 0.00 0.00 2.69
3710 4062 2.027653 TCCGTATGTGGCAGTCATTTGA 60.028 45.455 0.00 0.00 0.00 2.69
3711 4063 2.355197 TCCGTATGTGGCAGTCATTTG 58.645 47.619 0.00 0.00 0.00 2.32
3715 4067 0.901827 ACATCCGTATGTGGCAGTCA 59.098 50.000 0.00 0.00 44.79 3.41
3716 4068 2.882927 TACATCCGTATGTGGCAGTC 57.117 50.000 3.56 0.00 45.99 3.51
3717 4069 3.111853 CATACATCCGTATGTGGCAGT 57.888 47.619 3.56 0.00 46.70 4.40
3753 4105 4.390297 GGAGCAAACTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
3754 4106 4.569943 GGAGCAAACTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
3755 4107 3.614616 CGGAGCAAACTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
3756 4108 3.258372 ACGGAGCAAACTGAGTGAATCTA 59.742 43.478 0.00 0.00 0.00 1.98
3757 4109 2.037772 ACGGAGCAAACTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
3758 4110 2.417719 ACGGAGCAAACTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
3759 4111 2.550830 ACGGAGCAAACTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
3760 4112 3.244078 ACATACGGAGCAAACTGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
3761 4113 2.299013 ACATACGGAGCAAACTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
3762 4114 2.688507 ACATACGGAGCAAACTGAGTG 58.311 47.619 0.00 0.00 0.00 3.51
3763 4115 3.510360 ACTACATACGGAGCAAACTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
3765 4117 3.508402 TGACTACATACGGAGCAAACTGA 59.492 43.478 0.00 0.00 0.00 3.41
3766 4118 3.612860 GTGACTACATACGGAGCAAACTG 59.387 47.826 0.00 0.00 0.00 3.16
3767 4119 3.510360 AGTGACTACATACGGAGCAAACT 59.490 43.478 0.00 0.00 0.00 2.66
3768 4120 3.846360 AGTGACTACATACGGAGCAAAC 58.154 45.455 0.00 0.00 0.00 2.93
3769 4121 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3770 4122 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3771 4123 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3772 4124 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3773 4125 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3774 4126 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3775 4127 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
3776 4128 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
3778 4130 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
3779 4131 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
3780 4132 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
3781 4133 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
3782 4134 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
3784 4136 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
3785 4137 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
3788 4140 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
3789 4141 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
3790 4142 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
3791 4143 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
3792 4144 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
3793 4145 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
3795 4147 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
3796 4148 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
3797 4149 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
3800 4152 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
3801 4153 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3802 4154 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3805 4157 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3806 4158 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3819 4323 2.091222 AGCTTATACTCCCTCCGTTCCT 60.091 50.000 0.00 0.00 0.00 3.36
3820 4324 2.317973 AGCTTATACTCCCTCCGTTCC 58.682 52.381 0.00 0.00 0.00 3.62
3822 4326 4.544683 AGTAAGCTTATACTCCCTCCGTT 58.455 43.478 9.88 0.00 30.26 4.44
4445 5180 7.121382 TCAGAATGCTATCAAGGGAAAAGAAT 58.879 34.615 0.00 0.00 34.76 2.40
4448 5183 6.956202 ATCAGAATGCTATCAAGGGAAAAG 57.044 37.500 0.00 0.00 34.76 2.27
4983 5802 6.094603 GGGCATGATGATTGGTTAGATACATC 59.905 42.308 0.00 0.00 35.96 3.06
5013 5832 0.893270 ATGCTGTGCCGCCTACAAAA 60.893 50.000 0.00 0.00 0.00 2.44
5317 6136 3.132139 TCGGCGGTCTCCTTCTCG 61.132 66.667 7.21 0.00 0.00 4.04
5385 6204 1.203050 CCAACCCAACCCAGATTGAGT 60.203 52.381 0.00 0.00 0.00 3.41
5391 6210 2.520458 CAGCCAACCCAACCCAGA 59.480 61.111 0.00 0.00 0.00 3.86
5417 6236 7.615757 TCCAGTTCTCTCTTTACATCATAGACA 59.384 37.037 0.00 0.00 0.00 3.41
5418 6237 8.001881 TCCAGTTCTCTCTTTACATCATAGAC 57.998 38.462 0.00 0.00 0.00 2.59
5671 6494 3.319122 GGACAAGAAAAGCACAGGTGAAT 59.681 43.478 3.10 0.00 0.00 2.57
5673 6496 2.297701 GGACAAGAAAAGCACAGGTGA 58.702 47.619 3.10 0.00 0.00 4.02
5675 6498 1.064017 TGGGACAAGAAAAGCACAGGT 60.064 47.619 0.00 0.00 31.92 4.00
5676 6499 1.610522 CTGGGACAAGAAAAGCACAGG 59.389 52.381 0.00 0.00 38.70 4.00
5694 6517 7.147312 TCAAACAAGAAACAAATCATAGCCTG 58.853 34.615 0.00 0.00 0.00 4.85
5695 6518 7.288810 TCAAACAAGAAACAAATCATAGCCT 57.711 32.000 0.00 0.00 0.00 4.58
5747 6570 4.806775 GCTCCGGTATTTTTGTTGTTGTTT 59.193 37.500 0.00 0.00 0.00 2.83
5753 6576 2.556622 ACTGGCTCCGGTATTTTTGTTG 59.443 45.455 0.00 0.00 33.13 3.33
5755 6578 2.579410 ACTGGCTCCGGTATTTTTGT 57.421 45.000 0.00 0.00 33.13 2.83
5756 6579 3.081804 AGAACTGGCTCCGGTATTTTTG 58.918 45.455 0.00 0.00 34.70 2.44
5757 6580 3.081804 CAGAACTGGCTCCGGTATTTTT 58.918 45.455 0.00 0.00 34.70 1.94
5758 6581 2.039879 ACAGAACTGGCTCCGGTATTTT 59.960 45.455 0.00 0.00 34.70 1.82
5759 6582 1.628846 ACAGAACTGGCTCCGGTATTT 59.371 47.619 0.00 0.00 34.70 1.40
5760 6583 1.276622 ACAGAACTGGCTCCGGTATT 58.723 50.000 0.00 0.00 34.70 1.89
5765 6588 0.671781 CCAGAACAGAACTGGCTCCG 60.672 60.000 6.76 0.00 46.30 4.63
5771 6594 1.538512 CACATGCCCAGAACAGAACTG 59.461 52.381 0.00 0.00 35.43 3.16
5774 6597 0.178995 TGCACATGCCCAGAACAGAA 60.179 50.000 0.49 0.00 41.18 3.02
5784 6607 2.029020 TCTCGGATAGTATGCACATGCC 60.029 50.000 0.49 0.00 41.18 4.40
5839 6662 2.028294 TGGTTTTTGCACATGGCCTATG 60.028 45.455 3.32 8.98 43.89 2.23
5840 6663 2.255406 TGGTTTTTGCACATGGCCTAT 58.745 42.857 3.32 0.00 43.89 2.57
5841 6664 1.709578 TGGTTTTTGCACATGGCCTA 58.290 45.000 3.32 0.00 43.89 3.93
5842 6665 0.835941 TTGGTTTTTGCACATGGCCT 59.164 45.000 3.32 0.00 43.89 5.19
5843 6666 0.943673 GTTGGTTTTTGCACATGGCC 59.056 50.000 0.00 0.00 43.89 5.36
5844 6667 0.581053 CGTTGGTTTTTGCACATGGC 59.419 50.000 0.00 0.00 45.13 4.40
5845 6668 1.933247 ACGTTGGTTTTTGCACATGG 58.067 45.000 0.00 0.00 0.00 3.66
5846 6669 2.926200 TGAACGTTGGTTTTTGCACATG 59.074 40.909 5.00 0.00 36.24 3.21
5847 6670 2.926838 GTGAACGTTGGTTTTTGCACAT 59.073 40.909 5.00 0.00 36.24 3.21
5848 6671 2.029828 AGTGAACGTTGGTTTTTGCACA 60.030 40.909 5.00 0.00 36.24 4.57
5849 6672 2.596862 GAGTGAACGTTGGTTTTTGCAC 59.403 45.455 5.00 4.86 36.24 4.57
5850 6673 2.229062 TGAGTGAACGTTGGTTTTTGCA 59.771 40.909 5.00 0.00 36.24 4.08
5851 6674 2.869897 TGAGTGAACGTTGGTTTTTGC 58.130 42.857 5.00 0.00 36.24 3.68
5852 6675 5.816919 AGTATGAGTGAACGTTGGTTTTTG 58.183 37.500 5.00 0.00 36.24 2.44
5853 6676 7.556733 TTAGTATGAGTGAACGTTGGTTTTT 57.443 32.000 5.00 0.00 36.24 1.94
5854 6677 7.739498 ATTAGTATGAGTGAACGTTGGTTTT 57.261 32.000 5.00 0.00 36.24 2.43
5855 6678 7.739498 AATTAGTATGAGTGAACGTTGGTTT 57.261 32.000 5.00 0.00 36.24 3.27
5856 6679 7.581476 CAAATTAGTATGAGTGAACGTTGGTT 58.419 34.615 5.00 0.00 39.63 3.67
5857 6680 6.348213 GCAAATTAGTATGAGTGAACGTTGGT 60.348 38.462 5.00 0.00 0.00 3.67
5858 6681 6.021596 GCAAATTAGTATGAGTGAACGTTGG 58.978 40.000 5.00 0.00 0.00 3.77
5859 6682 6.021596 GGCAAATTAGTATGAGTGAACGTTG 58.978 40.000 5.00 0.00 0.00 4.10
5860 6683 5.938125 AGGCAAATTAGTATGAGTGAACGTT 59.062 36.000 0.00 0.00 0.00 3.99
5861 6684 5.488341 AGGCAAATTAGTATGAGTGAACGT 58.512 37.500 0.00 0.00 0.00 3.99
5862 6685 6.250819 CAAGGCAAATTAGTATGAGTGAACG 58.749 40.000 0.00 0.00 0.00 3.95
5863 6686 6.030228 GCAAGGCAAATTAGTATGAGTGAAC 58.970 40.000 0.00 0.00 0.00 3.18
5864 6687 5.125417 GGCAAGGCAAATTAGTATGAGTGAA 59.875 40.000 0.00 0.00 0.00 3.18
5865 6688 4.640201 GGCAAGGCAAATTAGTATGAGTGA 59.360 41.667 0.00 0.00 0.00 3.41
5866 6689 4.641989 AGGCAAGGCAAATTAGTATGAGTG 59.358 41.667 0.00 0.00 0.00 3.51
5867 6690 4.860022 AGGCAAGGCAAATTAGTATGAGT 58.140 39.130 0.00 0.00 0.00 3.41
5868 6691 5.585390 CAAGGCAAGGCAAATTAGTATGAG 58.415 41.667 0.00 0.00 0.00 2.90
5869 6692 4.142182 GCAAGGCAAGGCAAATTAGTATGA 60.142 41.667 0.00 0.00 0.00 2.15
5870 6693 4.114794 GCAAGGCAAGGCAAATTAGTATG 58.885 43.478 0.00 0.00 0.00 2.39
5871 6694 3.132824 GGCAAGGCAAGGCAAATTAGTAT 59.867 43.478 0.00 0.00 0.00 2.12
5872 6695 2.495669 GGCAAGGCAAGGCAAATTAGTA 59.504 45.455 0.00 0.00 0.00 1.82
5873 6696 1.276138 GGCAAGGCAAGGCAAATTAGT 59.724 47.619 0.00 0.00 0.00 2.24
5874 6697 1.551883 AGGCAAGGCAAGGCAAATTAG 59.448 47.619 5.62 0.00 0.00 1.73
5875 6698 1.643310 AGGCAAGGCAAGGCAAATTA 58.357 45.000 5.62 0.00 0.00 1.40
5876 6699 1.643310 TAGGCAAGGCAAGGCAAATT 58.357 45.000 5.62 0.00 0.00 1.82
5877 6700 1.551883 CTTAGGCAAGGCAAGGCAAAT 59.448 47.619 5.62 0.00 0.00 2.32
5878 6701 0.968405 CTTAGGCAAGGCAAGGCAAA 59.032 50.000 5.62 0.00 0.00 3.68
5879 6702 0.178964 ACTTAGGCAAGGCAAGGCAA 60.179 50.000 5.62 0.00 35.97 4.52
5880 6703 0.178964 AACTTAGGCAAGGCAAGGCA 60.179 50.000 5.62 0.00 35.97 4.75
5881 6704 0.528017 GAACTTAGGCAAGGCAAGGC 59.472 55.000 0.00 0.00 35.97 4.35
5882 6705 1.909700 TGAACTTAGGCAAGGCAAGG 58.090 50.000 0.00 0.00 35.97 3.61
5883 6706 2.821969 ACATGAACTTAGGCAAGGCAAG 59.178 45.455 0.00 1.01 35.97 4.01
5884 6707 2.557924 CACATGAACTTAGGCAAGGCAA 59.442 45.455 0.00 0.00 35.97 4.52
5885 6708 2.161855 CACATGAACTTAGGCAAGGCA 58.838 47.619 0.00 0.00 35.97 4.75
5886 6709 1.135286 GCACATGAACTTAGGCAAGGC 60.135 52.381 0.00 0.00 35.97 4.35
5887 6710 1.131126 CGCACATGAACTTAGGCAAGG 59.869 52.381 0.00 0.00 35.97 3.61
5888 6711 1.466360 GCGCACATGAACTTAGGCAAG 60.466 52.381 0.30 0.00 37.81 4.01
5889 6712 0.521291 GCGCACATGAACTTAGGCAA 59.479 50.000 0.30 0.00 0.00 4.52
5890 6713 1.305219 GGCGCACATGAACTTAGGCA 61.305 55.000 10.83 0.00 0.00 4.75
5891 6714 1.026718 AGGCGCACATGAACTTAGGC 61.027 55.000 10.83 0.00 0.00 3.93
5892 6715 0.729116 CAGGCGCACATGAACTTAGG 59.271 55.000 10.83 0.00 0.00 2.69
5893 6716 1.394917 GTCAGGCGCACATGAACTTAG 59.605 52.381 10.83 0.00 0.00 2.18
5894 6717 1.438651 GTCAGGCGCACATGAACTTA 58.561 50.000 10.83 0.00 0.00 2.24
5895 6718 1.568612 CGTCAGGCGCACATGAACTT 61.569 55.000 10.83 0.00 0.00 2.66
5896 6719 2.029288 CGTCAGGCGCACATGAACT 61.029 57.895 10.83 0.00 0.00 3.01
5897 6720 2.476051 CGTCAGGCGCACATGAAC 59.524 61.111 10.83 4.66 0.00 3.18
5898 6721 2.741985 CCGTCAGGCGCACATGAA 60.742 61.111 10.83 0.00 39.71 2.57
5899 6722 4.758251 CCCGTCAGGCGCACATGA 62.758 66.667 10.83 7.49 39.71 3.07
5900 6723 2.642996 TATCCCGTCAGGCGCACATG 62.643 60.000 10.83 4.75 39.71 3.21
5901 6724 2.369257 CTATCCCGTCAGGCGCACAT 62.369 60.000 10.83 0.00 39.71 3.21
5902 6725 3.071837 TATCCCGTCAGGCGCACA 61.072 61.111 10.83 0.00 39.71 4.57
5903 6726 1.731433 TACTATCCCGTCAGGCGCAC 61.731 60.000 10.83 0.00 39.71 5.34
5904 6727 1.454295 TACTATCCCGTCAGGCGCA 60.454 57.895 10.83 0.00 39.71 6.09
5905 6728 1.007618 GTACTATCCCGTCAGGCGC 60.008 63.158 0.00 0.00 39.71 6.53
5906 6729 1.105167 TGGTACTATCCCGTCAGGCG 61.105 60.000 0.00 0.00 40.95 5.52
5907 6730 1.272769 GATGGTACTATCCCGTCAGGC 59.727 57.143 7.97 0.00 37.83 4.85
5908 6731 2.594131 TGATGGTACTATCCCGTCAGG 58.406 52.381 15.79 0.00 41.86 3.86
5963 6786 4.657436 AGTTAAGCAGAATCTCCTACCG 57.343 45.455 0.00 0.00 0.00 4.02
5987 6810 3.996363 TGCAGCTACAACTGATGTTACTG 59.004 43.478 12.55 12.55 43.63 2.74
6031 6854 4.164221 TGGAGGGGCTAGAAATTTCTACAG 59.836 45.833 21.46 16.45 38.70 2.74
6044 6867 4.815973 ATGGCGGTGGAGGGGCTA 62.816 66.667 0.00 0.00 0.00 3.93
6077 6963 6.489127 TTTATGACTACAACAACAATCCCG 57.511 37.500 0.00 0.00 0.00 5.14
6141 7027 0.748005 GCCAACACTATGACCGGCAT 60.748 55.000 14.43 14.43 39.38 4.40
6174 7060 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
6175 7061 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
6176 7062 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
6177 7063 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
6178 7064 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
6179 7065 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
6192 7078 9.887406 CTAATGTGGTGTTAAAAACGTTCTTAT 57.113 29.630 0.00 0.00 0.00 1.73
6193 7079 8.891720 ACTAATGTGGTGTTAAAAACGTTCTTA 58.108 29.630 0.00 0.00 0.00 2.10
6194 7080 7.698970 CACTAATGTGGTGTTAAAAACGTTCTT 59.301 33.333 0.00 0.00 40.33 2.52
6195 7081 7.190871 CACTAATGTGGTGTTAAAAACGTTCT 58.809 34.615 0.00 0.00 40.33 3.01
6196 7082 7.164662 GACACTAATGTGGTGTTAAAAACGTTC 59.835 37.037 0.00 0.00 46.23 3.95
6197 7083 6.968335 GACACTAATGTGGTGTTAAAAACGTT 59.032 34.615 0.00 0.00 46.23 3.99
6198 7084 6.093771 TGACACTAATGTGGTGTTAAAAACGT 59.906 34.615 0.00 0.00 46.23 3.99
6199 7085 6.487960 TGACACTAATGTGGTGTTAAAAACG 58.512 36.000 0.00 0.00 46.23 3.60
6200 7086 8.690680 TTTGACACTAATGTGGTGTTAAAAAC 57.309 30.769 10.85 0.00 46.23 2.43
6203 7089 7.485277 CGTTTTTGACACTAATGTGGTGTTAAA 59.515 33.333 9.67 9.67 46.23 1.52
6204 7090 6.967767 CGTTTTTGACACTAATGTGGTGTTAA 59.032 34.615 0.00 0.00 46.23 2.01
6205 7091 6.093771 ACGTTTTTGACACTAATGTGGTGTTA 59.906 34.615 0.00 0.00 46.23 2.41
6206 7092 5.106078 ACGTTTTTGACACTAATGTGGTGTT 60.106 36.000 0.00 0.00 46.23 3.32
6218 7104 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
6219 7105 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
6220 7106 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
6221 7107 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
6222 7108 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
6223 7109 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
6224 7110 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
6225 7111 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
6226 7112 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
6227 7113 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
6228 7114 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
6229 7115 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
6230 7116 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
6231 7117 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
6232 7118 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6233 7119 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6234 7120 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6235 7121 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6236 7122 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
6237 7123 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6238 7124 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6239 7125 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6240 7126 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
6241 7127 1.002069 TTACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
6242 7128 2.237643 GATTACTACTCCCTCCGTCCC 58.762 57.143 0.00 0.00 0.00 4.46
6243 7129 2.941480 TGATTACTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
6244 7130 3.506844 GGATGATTACTACTCCCTCCGTC 59.493 52.174 0.00 0.00 0.00 4.79
6245 7131 3.140519 AGGATGATTACTACTCCCTCCGT 59.859 47.826 0.00 0.00 0.00 4.69
6246 7132 3.759618 GAGGATGATTACTACTCCCTCCG 59.240 52.174 0.00 0.00 34.25 4.63
6247 7133 4.742012 TGAGGATGATTACTACTCCCTCC 58.258 47.826 0.00 0.00 38.27 4.30
6248 7134 5.420739 GGATGAGGATGATTACTACTCCCTC 59.579 48.000 0.00 0.00 39.20 4.30
6249 7135 5.077159 AGGATGAGGATGATTACTACTCCCT 59.923 44.000 0.00 0.00 0.00 4.20
6250 7136 5.337788 AGGATGAGGATGATTACTACTCCC 58.662 45.833 0.00 0.00 0.00 4.30
6251 7137 6.013379 TGAGGATGAGGATGATTACTACTCC 58.987 44.000 0.00 0.00 0.00 3.85
6252 7138 7.415095 CGATGAGGATGAGGATGATTACTACTC 60.415 44.444 0.00 0.00 0.00 2.59
6253 7139 6.376864 CGATGAGGATGAGGATGATTACTACT 59.623 42.308 0.00 0.00 0.00 2.57
6254 7140 6.151985 ACGATGAGGATGAGGATGATTACTAC 59.848 42.308 0.00 0.00 0.00 2.73
6255 7141 6.249192 ACGATGAGGATGAGGATGATTACTA 58.751 40.000 0.00 0.00 0.00 1.82
6256 7142 5.083122 ACGATGAGGATGAGGATGATTACT 58.917 41.667 0.00 0.00 0.00 2.24
6272 7158 6.374053 AGGATGATGACTATGACTACGATGAG 59.626 42.308 0.00 0.00 0.00 2.90
6297 7183 5.072741 TGATGATGACTACGATGAGGATGA 58.927 41.667 0.00 0.00 0.00 2.92
6298 7184 5.382618 TGATGATGACTACGATGAGGATG 57.617 43.478 0.00 0.00 0.00 3.51
6299 7185 5.163673 CGATGATGATGACTACGATGAGGAT 60.164 44.000 0.00 0.00 0.00 3.24
6300 7186 4.154918 CGATGATGATGACTACGATGAGGA 59.845 45.833 0.00 0.00 0.00 3.71
6301 7187 4.083057 ACGATGATGATGACTACGATGAGG 60.083 45.833 0.00 0.00 0.00 3.86
6302 7188 5.040715 ACGATGATGATGACTACGATGAG 57.959 43.478 0.00 0.00 0.00 2.90
6303 7189 4.515191 TGACGATGATGATGACTACGATGA 59.485 41.667 0.00 0.00 0.00 2.92
6304 7190 4.787598 TGACGATGATGATGACTACGATG 58.212 43.478 0.00 0.00 0.00 3.84
6305 7191 5.635417 ATGACGATGATGATGACTACGAT 57.365 39.130 0.00 0.00 0.00 3.73
6306 7192 4.377431 CGATGACGATGATGATGACTACGA 60.377 45.833 0.00 0.00 42.66 3.43
6307 7193 3.842984 CGATGACGATGATGATGACTACG 59.157 47.826 0.00 0.00 42.66 3.51
6308 7194 4.788690 ACGATGACGATGATGATGACTAC 58.211 43.478 0.00 0.00 42.66 2.73
6309 7195 4.515191 TGACGATGACGATGATGATGACTA 59.485 41.667 0.00 0.00 42.66 2.59
6310 7196 3.316308 TGACGATGACGATGATGATGACT 59.684 43.478 0.00 0.00 42.66 3.41
6311 7197 3.632189 TGACGATGACGATGATGATGAC 58.368 45.455 0.00 0.00 42.66 3.06
6312 7198 3.988379 TGACGATGACGATGATGATGA 57.012 42.857 0.00 0.00 42.66 2.92
6313 7199 4.483311 AGATGACGATGACGATGATGATG 58.517 43.478 0.00 0.00 42.66 3.07
6314 7200 4.780275 AGATGACGATGACGATGATGAT 57.220 40.909 0.00 0.00 42.66 2.45
6315 7201 4.540824 GAAGATGACGATGACGATGATGA 58.459 43.478 0.00 0.00 42.66 2.92
6316 7202 3.672397 GGAAGATGACGATGACGATGATG 59.328 47.826 0.00 0.00 42.66 3.07
6317 7203 3.319122 TGGAAGATGACGATGACGATGAT 59.681 43.478 0.00 0.00 42.66 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.