AutoCloner

Multiple sequence alignment - TraesCS5D01G159900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G159900	chr5D	100.000	6874	0	0	1	6874	249794906	249788033	0.000000e+00	12694
1	TraesCS5D01G159900	chr5B	95.267	3465	122	23	3421	6874	282390578	282387145	0.000000e+00	5452
2	TraesCS5D01G159900	chr5B	91.477	2241	101	39	2	2181	282394323	282392112	0.000000e+00	2998
3	TraesCS5D01G159900	chr5B	94.196	982	18	7	2180	3153	282391998	282391048	0.000000e+00	1461
4	TraesCS5D01G159900	chr5B	93.523	386	15	8	3026	3409	282391050	282390673	3.600000e-157	566
5	TraesCS5D01G159900	chr5B	92.748	262	19	0	6377	6638	548927411	548927672	5.030000e-101	379
6	TraesCS5D01G159900	chr5A	95.557	3241	126	5	2922	6150	332300613	332297379	0.000000e+00	5171
7	TraesCS5D01G159900	chr5A	93.840	2224	64	23	2	2186	332303909	332301720	0.000000e+00	3280
8	TraesCS5D01G159900	chr5A	92.319	664	18	7	2165	2821	332301711	332301074	0.000000e+00	913
9	TraesCS5D01G159900	chr5A	97.368	76	1	1	2849	2924	332301073	332300999	2.010000e-25	128
10	TraesCS5D01G159900	chr4A	78.301	2355	425	56	3488	5806	459634519	459632215	0.000000e+00	1439
11	TraesCS5D01G159900	chr4A	88.424	1123	114	14	984	2100	459637242	459636130	0.000000e+00	1339
12	TraesCS5D01G159900	chr4B	78.244	2358	429	56	3479	5803	178847332	178849638	0.000000e+00	1435
13	TraesCS5D01G159900	chr4B	87.658	1110	119	12	1000	2097	178844664	178845767	0.000000e+00	1275
14	TraesCS5D01G159900	chr7B	90.552	1069	95	4	991	2059	665725129	665726191	0.000000e+00	1410
15	TraesCS5D01G159900	chr4D	78.009	2351	424	61	3488	5803	116816055	116818347	0.000000e+00	1391
16	TraesCS5D01G159900	chr4D	87.922	1126	117	11	984	2097	116813531	116814649	0.000000e+00	1308
17	TraesCS5D01G159900	chr4D	90.634	662	54	8	6216	6874	51903925	51904581	0.000000e+00	872
18	TraesCS5D01G159900	chr6B	87.691	1113	80	18	991	2059	18590884	18591983	0.000000e+00	1243
19	TraesCS5D01G159900	chr6B	88.816	456	49	2	1605	2059	719101042	719101496	6.020000e-155	558
20	TraesCS5D01G159900	chr6B	86.235	494	50	6	995	1470	719100573	719101066	2.840000e-143	520
21	TraesCS5D01G159900	chr1D	91.239	662	52	6	6216	6874	462862042	462861384	0.000000e+00	896
22	TraesCS5D01G159900	chr1D	82.394	142	18	6	6227	6365	233921169	233921032	4.360000e-22	117
23	TraesCS5D01G159900	chr3A	87.551	490	54	2	6386	6874	51407755	51407272	1.670000e-155	560
24	TraesCS5D01G159900	chr3A	87.037	162	19	2	6453	6614	740927422	740927263	1.520000e-41	182
25	TraesCS5D01G159900	chr3D	83.879	397	58	6	6216	6610	608386869	608387261	2.340000e-99	374
26	TraesCS5D01G159900	chr7A	88.696	115	13	0	1142	1256	115311196	115311310	2.580000e-29	141
27	TraesCS5D01G159900	chr7D	85.366	123	18	0	1142	1264	109374493	109374615	2.010000e-25	128

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G159900	chr5D	249788033	249794906	6873	True	12694.00	12694	100.00000	1	6874	1	chr5D.!!$R1	6873
1	TraesCS5D01G159900	chr5B	282387145	282394323	7178	True	2619.25	5452	93.61575	2	6874	4	chr5B.!!$R1	6872
2	TraesCS5D01G159900	chr5A	332297379	332303909	6530	True	2373.00	5171	94.77100	2	6150	4	chr5A.!!$R1	6148
3	TraesCS5D01G159900	chr4A	459632215	459637242	5027	True	1389.00	1439	83.36250	984	5806	2	chr4A.!!$R1	4822
4	TraesCS5D01G159900	chr4B	178844664	178849638	4974	False	1355.00	1435	82.95100	1000	5803	2	chr4B.!!$F1	4803
5	TraesCS5D01G159900	chr7B	665725129	665726191	1062	False	1410.00	1410	90.55200	991	2059	1	chr7B.!!$F1	1068
6	TraesCS5D01G159900	chr4D	116813531	116818347	4816	False	1349.50	1391	82.96550	984	5803	2	chr4D.!!$F2	4819
7	TraesCS5D01G159900	chr4D	51903925	51904581	656	False	872.00	872	90.63400	6216	6874	1	chr4D.!!$F1	658
8	TraesCS5D01G159900	chr6B	18590884	18591983	1099	False	1243.00	1243	87.69100	991	2059	1	chr6B.!!$F1	1068
9	TraesCS5D01G159900	chr6B	719100573	719101496	923	False	539.00	558	87.52550	995	2059	2	chr6B.!!$F2	1064
10	TraesCS5D01G159900	chr1D	462861384	462862042	658	True	896.00	896	91.23900	6216	6874	1	chr1D.!!$R2	658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
915	995	0.317519	AGTTGGTTTTACGCTTGCGC	60.318	50.000	15.21	0.00	6.09	F
1609	1719	0.673022	CTTTCTCTGCAGCTTCGCCT	60.673	55.000	9.47	0.00	5.52	F
2174	2325	0.385390	AGCCCTTTCACTTTTGCACG	59.615	50.000	0.00	0.00	5.34	F
2826	3288	1.079543	CAGAGCCAAGAGTCCACGG	60.080	63.158	0.00	0.00	4.94	F
3617	4885	1.149854	AAACCCTCCGGTGTCAACC	59.850	57.895	0.00	43.71	3.77	F
4495	5766	1.302033	AGCCCTTTGCACAGTCTCG	60.302	57.895	0.00	44.83	4.04	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2115	2266	2.484889	GATAAAGGAGATGCCGTGGTC	58.515	52.381	0.00	0.00	43.43	4.02	R
3105	4086	5.924254	TGAAATTTGAAAGATCAGCAAGCAG	59.076	36.000	0.00	0.00	36.78	4.24	R
3807	5075	1.368255	CTGTGCGTGCGCGTTTTTA	60.368	52.632	22.18	3.00	45.51	1.52	R
4495	5766	2.686106	TGGAACCCCGGGAGCTAC	60.686	66.667	26.32	6.92	34.29	3.58	R
4928	6202	1.060266	CGCTTCTTGCTCAACTCATCG	59.940	52.381	0.00	0.00	40.11	3.84	R
6264	7573	0.108186	TCGGACACTGTGGATGATGC	60.108	55.000	13.09	0.00	0.00	3.91	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	104	0.393944	AGATGCATGTGTGGCTGGAG	60.394	55.000	2.46	0.00	0.00	3.86
203	207	5.121768	ACGAATGTGATGTAAGCCTAACAAC	59.878	40.000	0.00	0.00	0.00	3.32
246	250	1.922570	TCGAGCTAAAGATGCGGTTC	58.077	50.000	0.00	0.00	35.28	3.62
264	268	2.031258	TCGTTTCTCAAGCCACACAA	57.969	45.000	0.00	0.00	0.00	3.33
382	394	5.262714	CCAATAATTGGTCGTGCAAAAAC	57.737	39.130	0.00	0.00	45.93	2.43
410	426	3.110705	AGGACCATATGAGCACTTCACT	58.889	45.455	3.65	0.00	38.99	3.41
452	468	0.885879	CAGTGTGCATGCATCCTGTT	59.114	50.000	28.12	11.13	0.00	3.16
502	526	1.704007	GCATCTTCTAGGCCTGGGCT	61.704	60.000	26.86	26.86	42.39	5.19
503	527	1.722034	CATCTTCTAGGCCTGGGCTA	58.278	55.000	26.22	26.22	39.70	3.93
709	770	2.099141	CATATATGCTCCACCCCACG	57.901	55.000	0.00	0.00	0.00	4.94
722	783	1.254975	CCCCACGAAATTTCCCCACC	61.255	60.000	12.54	0.00	0.00	4.61
747	808	2.494530	GGCCTCACCACGCCAAAAA	61.495	57.895	0.00	0.00	45.01	1.94
839	903	2.209533	TATTATCCCCACCCCGGAAA	57.790	50.000	0.73	0.00	36.56	3.13
912	992	1.069500	CGGGAGTTGGTTTTACGCTTG	60.069	52.381	0.00	0.00	0.00	4.01
913	993	1.335597	GGGAGTTGGTTTTACGCTTGC	60.336	52.381	0.00	0.00	0.00	4.01
914	994	1.662026	GGAGTTGGTTTTACGCTTGCG	60.662	52.381	13.70	13.70	0.00	4.85
915	995	0.317519	AGTTGGTTTTACGCTTGCGC	60.318	50.000	15.21	0.00	0.00	6.09
944	1024	0.808755	CCATGCCCGGTGAAAAGTAC	59.191	55.000	0.00	0.00	0.00	2.73
958	1038	1.546961	AAGTACTAGTCGCAGCCAGT	58.453	50.000	0.00	0.00	0.00	4.00
966	1046	4.767255	CGCAGCCAGTCAGGTCCC	62.767	72.222	0.00	0.00	40.61	4.46
975	1055	3.243053	TCAGGTCCCCGCCGAAAA	61.243	61.111	0.00	0.00	0.00	2.29
976	1056	2.045340	CAGGTCCCCGCCGAAAAT	60.045	61.111	0.00	0.00	0.00	1.82
977	1057	2.112815	CAGGTCCCCGCCGAAAATC	61.113	63.158	0.00	0.00	0.00	2.17
1609	1719	0.673022	CTTTCTCTGCAGCTTCGCCT	60.673	55.000	9.47	0.00	0.00	5.52
1878	1995	2.288457	CCTCGTCATAAGCATCGGTGAT	60.288	50.000	0.00	0.00	0.00	3.06
1890	2007	3.430098	GCATCGGTGATCTCAGAGAACTT	60.430	47.826	3.63	0.00	0.00	2.66
1893	2010	3.574396	TCGGTGATCTCAGAGAACTTGTT	59.426	43.478	3.63	0.00	0.00	2.83
1922	2061	2.277072	CGAGCTCCAGGAGAGGGA	59.723	66.667	21.89	0.00	43.46	4.20
2174	2325	0.385390	AGCCCTTTCACTTTTGCACG	59.615	50.000	0.00	0.00	0.00	5.34
2189	2455	9.935682	CACTTTTGCACGTATATATCTTTCATT	57.064	29.630	0.00	0.00	0.00	2.57
2826	3288	1.079543	CAGAGCCAAGAGTCCACGG	60.080	63.158	0.00	0.00	0.00	4.94
2885	3347	5.483685	TTGACTAGTGGTGCTTAAGACAT	57.516	39.130	6.67	0.00	0.00	3.06
3078	4053	7.255381	CCATATTCTTCAGTAATTCCTTGGCTG	60.255	40.741	0.00	0.00	0.00	4.85
3105	4086	8.178313	GCTGTTTGTTCCTTATCTGATAAGTTC	58.822	37.037	27.09	19.17	40.44	3.01
3300	4484	5.390991	GCATTTTCACGAGAAAGAGTTAGGG	60.391	44.000	8.04	0.00	44.03	3.53
3484	4752	6.989759	TGTACTGCAGTTTCTTTCATCAACTA	59.010	34.615	27.06	0.00	0.00	2.24
3492	4760	8.930760	CAGTTTCTTTCATCAACTAGACCTAAG	58.069	37.037	0.00	0.00	0.00	2.18
3564	4832	4.567747	GGTGGACTTGTCAATGGTTCCTAT	60.568	45.833	3.08	0.00	0.00	2.57
3617	4885	1.149854	AAACCCTCCGGTGTCAACC	59.850	57.895	0.00	0.00	43.71	3.77
3807	5075	6.425577	TTGAAACGTTTTTAGTACAGCAGT	57.574	33.333	15.89	0.00	0.00	4.40
4495	5766	1.302033	AGCCCTTTGCACAGTCTCG	60.302	57.895	0.00	0.00	44.83	4.04
5512	6810	1.812686	CTGGGTTTGGTCGACGGAGA	61.813	60.000	9.92	0.00	0.00	3.71
5564	6862	2.324330	CGCCAACGACATCCTGCAA	61.324	57.895	0.00	0.00	43.93	4.08
5618	6916	2.345991	GGCTGCACGTTGGAGGTA	59.654	61.111	0.50	0.00	36.25	3.08
5670	6968	1.383109	TCATGGGCATCGGAGGACT	60.383	57.895	0.00	0.00	0.00	3.85
5858	7159	2.224402	GCTGCTCCCCTCGAGAATAATT	60.224	50.000	15.71	0.00	41.63	1.40
5874	7175	2.787473	AATTCTGGAGTGGCGATGAA	57.213	45.000	0.00	0.00	0.00	2.57
5875	7176	3.287867	AATTCTGGAGTGGCGATGAAT	57.712	42.857	0.00	0.00	0.00	2.57
5876	7177	4.422073	AATTCTGGAGTGGCGATGAATA	57.578	40.909	0.00	0.00	0.00	1.75
5877	7178	4.630644	ATTCTGGAGTGGCGATGAATAT	57.369	40.909	0.00	0.00	0.00	1.28
5946	7247	4.140536	GGTAGCTAGTCCACGGTAGTATT	58.859	47.826	0.00	0.00	0.00	1.89
6019	7320	5.193679	TGATTGCTAGCAGTCTACACTAGA	58.806	41.667	32.27	13.47	36.33	2.43
6049	7356	6.401903	GCACTGCCTTCTTCGATCAATATATG	60.402	42.308	0.00	0.00	0.00	1.78
6264	7573	8.629986	CGCACTTTATTAACTCAATCAAAGTTG	58.370	33.333	0.00	0.00	37.52	3.16
6276	7585	4.713824	ATCAAAGTTGCATCATCCACAG	57.286	40.909	0.00	0.00	0.00	3.66
6292	7601	6.432783	TCATCCACAGTGTCCGAAAATAAAAT	59.567	34.615	0.00	0.00	0.00	1.82
6321	7630	3.925379	GGATCACCATCCCAAACAAAAC	58.075	45.455	0.00	0.00	42.91	2.43
6324	7633	5.422012	GGATCACCATCCCAAACAAAACTAT	59.578	40.000	0.00	0.00	42.91	2.12
6325	7634	5.720371	TCACCATCCCAAACAAAACTATG	57.280	39.130	0.00	0.00	0.00	2.23
6326	7635	5.144100	TCACCATCCCAAACAAAACTATGT	58.856	37.500	0.00	0.00	34.24	2.29
6327	7636	5.242838	TCACCATCCCAAACAAAACTATGTC	59.757	40.000	0.00	0.00	31.81	3.06
6329	7638	6.432783	CACCATCCCAAACAAAACTATGTCTA	59.567	38.462	0.00	0.00	31.81	2.59
6331	7640	6.404734	CCATCCCAAACAAAACTATGTCTAGC	60.405	42.308	0.00	0.00	31.81	3.42
6332	7641	5.876357	TCCCAAACAAAACTATGTCTAGCT	58.124	37.500	0.00	0.00	31.81	3.32
6333	7642	7.011499	TCCCAAACAAAACTATGTCTAGCTA	57.989	36.000	0.00	0.00	31.81	3.32
6355	7664	7.981142	GCTATACAGAACTATGTCTAGCTAGG	58.019	42.308	20.58	6.66	45.39	3.02
6365	7674	1.878522	CTAGCTAGGTTGTGCGCCG	60.879	63.158	13.32	0.00	0.00	6.46
6368	7677	1.227147	GCTAGGTTGTGCGCCGATA	60.227	57.895	4.18	0.00	0.00	2.92
6369	7678	0.808453	GCTAGGTTGTGCGCCGATAA	60.808	55.000	4.18	0.00	0.00	1.75
6403	7712	2.032030	AGGACAATGCGTGAAAGAAACG	60.032	45.455	0.00	0.00	43.81	3.60
6425	7734	4.498345	CGTCACCTATACAGAGAGCCTTTC	60.498	50.000	0.00	0.00	0.00	2.62
6435	7744	3.190118	CAGAGAGCCTTTCGAAAGCAATT	59.810	43.478	28.68	15.50	34.69	2.32
6501	7810	6.183360	CCATTGCAAGCTTGAATAATTTCCAC	60.183	38.462	30.39	7.92	0.00	4.02
6533	7842	3.017442	TCAACAATCACCGGTTGACAAA	58.983	40.909	2.97	0.00	46.01	2.83
6543	7852	2.425668	CCGGTTGACAAACAAGGTCTTT	59.574	45.455	3.73	0.00	39.30	2.52
6580	7889	1.153765	CTGAAGTGCGATCGCCTCA	60.154	57.895	35.12	29.47	41.09	3.86
6583	7892	2.897641	GAAGTGCGATCGCCTCAGCT	62.898	60.000	35.12	21.43	41.09	4.24
6620	7929	0.608130	ATGAGTTAGCAGCCACGACA	59.392	50.000	0.00	0.00	0.00	4.35
6642	7951	4.624364	CGCCACAGCCTCACCACA	62.624	66.667	0.00	0.00	34.57	4.17
6657	7966	2.878406	CACCACAACTGTTTCGGAGAAT	59.122	45.455	11.02	0.00	45.90	2.40
6716	8025	2.664568	GCATCGACGTTTAGCTTGTACA	59.335	45.455	0.00	0.00	0.00	2.90
6817	8126	3.312828	CAGGATAGCGAATGCAGTACTC	58.687	50.000	0.00	0.00	46.23	2.59
6846	8155	6.375736	GGATTAAGGACTTTTTCTCCCTTCAG	59.624	42.308	0.00	0.00	39.51	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	52	5.674525	TGTGTTCCTCATATGAGTGGATTC	58.325	41.667	27.03	16.34	40.48	2.52
100	104	5.181245	TCTCCAAATTGATTTGTTCCTCGTC	59.819	40.000	13.64	0.00	44.21	4.20
203	207	7.461546	CGATGTAGACGTCTATTGTTCTGTTTG	60.462	40.741	27.02	5.56	0.00	2.93
246	250	2.842208	TTTGTGTGGCTTGAGAAACG	57.158	45.000	0.00	0.00	0.00	3.60
303	315	8.593945	TTGGAATTTCAGCCTATTCTAATTGT	57.406	30.769	0.00	0.00	29.73	2.71
313	325	8.469200	CATGTTTCTAATTGGAATTTCAGCCTA	58.531	33.333	4.96	0.00	0.00	3.93
332	344	1.127951	CGCGGTCCAACTACATGTTTC	59.872	52.381	2.30	0.00	36.63	2.78
382	394	1.066573	GCTCATATGGTCCTCCGATGG	60.067	57.143	2.13	0.00	36.30	3.51
410	426	2.774234	CTCCCTCTTGAATTCCCAGCTA	59.226	50.000	2.27	0.00	0.00	3.32
521	545	0.808755	CCCTTCCATTTACCGCACAC	59.191	55.000	0.00	0.00	0.00	3.82
660	703	0.826256	AGCCCTCGTCACACACTGTA	60.826	55.000	0.00	0.00	0.00	2.74
709	770	1.111277	CATCGGGGTGGGGAAATTTC	58.889	55.000	9.83	9.83	0.00	2.17
743	804	7.669089	TCTGGTTCCTCTTTTTATGGTTTTT	57.331	32.000	0.00	0.00	0.00	1.94
747	808	6.200878	TCTTCTGGTTCCTCTTTTTATGGT	57.799	37.500	0.00	0.00	0.00	3.55
839	903	1.834188	ATCGCTTCGGATTTTTGGGT	58.166	45.000	0.00	0.00	0.00	4.51
896	976	3.837669	CGCAAGCGTAAAACCAACT	57.162	47.368	6.25	0.00	34.35	3.16
944	1024	1.140589	CCTGACTGGCTGCGACTAG	59.859	63.158	0.00	0.00	0.00	2.57
1878	1995	2.594131	TCGGGAACAAGTTCTCTGAGA	58.406	47.619	10.77	2.58	37.91	3.27
2115	2266	2.484889	GATAAAGGAGATGCCGTGGTC	58.515	52.381	0.00	0.00	43.43	4.02
2189	2455	8.410673	TCAAACCCTAAGCATAAACAATTACA	57.589	30.769	0.00	0.00	0.00	2.41
2778	3240	9.349713	AGTACAAACCAAATCATCTTTCAAGTA	57.650	29.630	0.00	0.00	0.00	2.24
2779	3241	8.137437	CAGTACAAACCAAATCATCTTTCAAGT	58.863	33.333	0.00	0.00	0.00	3.16
3078	4053	6.599638	ACTTATCAGATAAGGAACAAACAGCC	59.400	38.462	27.11	0.00	45.05	4.85
3105	4086	5.924254	TGAAATTTGAAAGATCAGCAAGCAG	59.076	36.000	0.00	0.00	36.78	4.24
3492	4760	6.865205	AGCTGCAAATTACAAGATTGAAACTC	59.135	34.615	1.02	0.00	0.00	3.01
3617	4885	2.867975	TGCTCACATCTATCATTGCACG	59.132	45.455	0.00	0.00	0.00	5.34
3807	5075	1.368255	CTGTGCGTGCGCGTTTTTA	60.368	52.632	22.18	3.00	45.51	1.52
4495	5766	2.686106	TGGAACCCCGGGAGCTAC	60.686	66.667	26.32	6.92	34.29	3.58
4813	6087	3.570638	CGAGCTCTGCCAATGCCG	61.571	66.667	12.85	0.00	36.33	5.69
4928	6202	1.060266	CGCTTCTTGCTCAACTCATCG	59.940	52.381	0.00	0.00	40.11	3.84
5512	6810	1.927174	CGAACGCCTTGAATTCGATCT	59.073	47.619	0.04	0.00	46.28	2.75
5582	6880	3.806667	GAGCCCAGGATGCTGCCT	61.807	66.667	9.03	7.01	39.69	4.75
5858	7159	4.081476	CCATATATTCATCGCCACTCCAGA	60.081	45.833	0.00	0.00	0.00	3.86
5946	7247	2.605818	CGCAACCAAGCTTATAACGCTA	59.394	45.455	0.00	0.00	36.56	4.26
5959	7260	8.569641	ACTACAACTTATTTAATTCGCAACCAA	58.430	29.630	0.00	0.00	0.00	3.67
6019	7320	1.065926	TCGAAGAAGGCAGTGCATCAT	60.066	47.619	18.61	7.52	0.00	2.45
6049	7356	7.023575	CAGTCAAAATCTATACACTTGCCAAC	58.976	38.462	0.00	0.00	0.00	3.77
6264	7573	0.108186	TCGGACACTGTGGATGATGC	60.108	55.000	13.09	0.00	0.00	3.91
6276	7585	4.142249	CCCTGGGATTTTATTTTCGGACAC	60.142	45.833	7.01	0.00	0.00	3.67
6324	7633	9.713713	CTAGACATAGTTCTGTATAGCTAGACA	57.286	37.037	19.51	19.51	35.04	3.41
6331	7640	9.509956	AACCTAGCTAGACATAGTTCTGTATAG	57.490	37.037	22.70	1.49	41.62	1.31
6332	7641	9.286170	CAACCTAGCTAGACATAGTTCTGTATA	57.714	37.037	22.70	0.00	0.00	1.47
6333	7642	7.780745	ACAACCTAGCTAGACATAGTTCTGTAT	59.219	37.037	22.70	0.00	0.00	2.29
6338	7647	5.044558	GCACAACCTAGCTAGACATAGTTC	58.955	45.833	22.70	4.36	0.00	3.01
6355	7664	2.372350	GCTAATTTATCGGCGCACAAC	58.628	47.619	10.83	0.00	0.00	3.32
6365	7674	6.435292	TTGTCCTAGGGAGGCTAATTTATC	57.565	41.667	9.46	0.00	43.40	1.75
6368	7677	4.689983	GCATTGTCCTAGGGAGGCTAATTT	60.690	45.833	9.46	0.00	43.40	1.82
6369	7678	3.181439	GCATTGTCCTAGGGAGGCTAATT	60.181	47.826	9.46	0.00	43.40	1.40
6403	7712	4.498345	CGAAAGGCTCTCTGTATAGGTGAC	60.498	50.000	0.00	0.00	0.00	3.67
6435	7744	4.755411	CCCTTACTCAGCTATTTTGACGA	58.245	43.478	0.00	0.00	0.00	4.20
6448	7757	5.708736	TTGAAATATGGAGCCCTTACTCA	57.291	39.130	0.00	0.00	38.50	3.41
6501	7810	4.494690	CGGTGATTGTTGAATCAGATTCGG	60.495	45.833	16.82	0.00	46.95	4.30
6533	7842	3.947834	CTGGAACTGTTGAAAGACCTTGT	59.052	43.478	0.00	0.00	0.00	3.16
6543	7852	1.371183	CGAGGGCTGGAACTGTTGA	59.629	57.895	0.00	0.00	0.00	3.18
6580	7889	0.038599	TCCATGATGCCACAACAGCT	59.961	50.000	0.00	0.00	0.00	4.24
6583	7892	2.371306	CATCTCCATGATGCCACAACA	58.629	47.619	0.00	0.00	44.96	3.33
6642	7951	3.003480	GCTGCTATTCTCCGAAACAGTT	58.997	45.455	0.00	0.00	0.00	3.16
6674	7983	7.201644	CGATGCAACTTACTTTGAGAATGGTAT	60.202	37.037	0.00	0.00	0.00	2.73
6817	8126	5.816258	GGGAGAAAAAGTCCTTAATCCTACG	59.184	44.000	0.00	0.00	34.16	3.51
6846	8155	0.793250	GTGGCAGCGAAGAGAGTTTC	59.207	55.000	0.00	0.00	0.00	2.78

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.