Multiple sequence alignment - TraesCS5D01G159800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G159800 chr5D 100.000 4177 0 0 1 4177 249533870 249529694 0.000000e+00 7714.0
1 TraesCS5D01G159800 chr5D 97.487 199 5 0 3831 4029 332408645 332408843 1.440000e-89 340.0
2 TraesCS5D01G159800 chr5D 95.745 47 2 0 4087 4133 464597632 464597586 4.480000e-10 76.8
3 TraesCS5D01G159800 chr5D 92.308 52 4 0 2290 2341 177683508 177683457 1.610000e-09 75.0
4 TraesCS5D01G159800 chr5D 90.741 54 3 2 2290 2342 45654432 45654380 2.080000e-08 71.3
5 TraesCS5D01G159800 chr5D 97.561 41 1 0 4093 4133 59885578 59885538 2.080000e-08 71.3
6 TraesCS5D01G159800 chr5A 96.537 2050 38 7 1 2047 332291258 332289239 0.000000e+00 3362.0
7 TraesCS5D01G159800 chr5A 85.058 1372 115 46 2052 3389 332288786 332287471 0.000000e+00 1315.0
8 TraesCS5D01G159800 chr5A 83.807 457 42 18 3387 3831 332250682 332250246 5.030000e-109 405.0
9 TraesCS5D01G159800 chr5A 93.878 49 3 0 2290 2338 594959622 594959670 1.610000e-09 75.0
10 TraesCS5D01G159800 chr5B 96.078 1581 44 9 682 2258 282275652 282274086 0.000000e+00 2560.0
11 TraesCS5D01G159800 chr5B 91.713 893 45 13 2555 3430 282273928 282273048 0.000000e+00 1212.0
12 TraesCS5D01G159800 chr5B 94.550 734 32 5 1 732 282276287 282275560 0.000000e+00 1127.0
13 TraesCS5D01G159800 chr5B 81.250 304 30 14 3529 3831 282273005 282272728 1.950000e-53 220.0
14 TraesCS5D01G159800 chr2D 98.020 202 4 0 3828 4029 637830352 637830553 6.640000e-93 351.0
15 TraesCS5D01G159800 chr7D 97.500 200 5 0 3830 4029 118926103 118926302 4.000000e-90 342.0
16 TraesCS5D01G159800 chr7D 95.745 47 2 0 4087 4133 134104597 134104643 4.480000e-10 76.8
17 TraesCS5D01G159800 chr7D 95.556 45 2 0 2298 2342 353937278 353937234 5.790000e-09 73.1
18 TraesCS5D01G159800 chr6D 97.500 200 5 0 3830 4029 244681610 244681809 4.000000e-90 342.0
19 TraesCS5D01G159800 chr6D 97.000 200 6 0 3830 4029 90264497 90264696 1.860000e-88 337.0
20 TraesCS5D01G159800 chr3D 97.000 200 6 0 3830 4029 74404029 74404228 1.860000e-88 337.0
21 TraesCS5D01G159800 chr3D 97.000 200 6 0 3830 4029 77584907 77584708 1.860000e-88 337.0
22 TraesCS5D01G159800 chr3D 97.000 200 6 0 3830 4029 281396653 281396454 1.860000e-88 337.0
23 TraesCS5D01G159800 chr3D 100.000 33 0 0 4099 4131 71116386 71116418 1.250000e-05 62.1
24 TraesCS5D01G159800 chr4D 97.449 196 5 0 3831 4026 437395403 437395598 6.690000e-88 335.0
25 TraesCS5D01G159800 chr4D 95.745 47 2 0 4087 4133 375740163 375740209 4.480000e-10 76.8
26 TraesCS5D01G159800 chr1B 90.323 62 5 1 2279 2340 667973748 667973688 3.460000e-11 80.5
27 TraesCS5D01G159800 chr3B 94.118 51 3 0 2290 2340 628472955 628473005 1.250000e-10 78.7
28 TraesCS5D01G159800 chr3B 100.000 31 0 0 4101 4131 116438070 116438100 1.620000e-04 58.4
29 TraesCS5D01G159800 chr7A 95.556 45 2 0 2298 2342 391912505 391912461 5.790000e-09 73.1
30 TraesCS5D01G159800 chr4A 92.157 51 4 0 2290 2340 60937966 60938016 5.790000e-09 73.1
31 TraesCS5D01G159800 chr4A 94.444 36 2 0 4094 4129 735787515 735787480 5.830000e-04 56.5
32 TraesCS5D01G159800 chr1A 90.741 54 5 0 2287 2340 63350831 63350778 5.790000e-09 73.1
33 TraesCS5D01G159800 chr2B 93.478 46 3 0 4088 4133 182928414 182928459 7.490000e-08 69.4
34 TraesCS5D01G159800 chr6B 93.333 45 3 0 4087 4131 575935502 575935458 2.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G159800 chr5D 249529694 249533870 4176 True 7714.00 7714 100.00000 1 4177 1 chr5D.!!$R4 4176
1 TraesCS5D01G159800 chr5A 332287471 332291258 3787 True 2338.50 3362 90.79750 1 3389 2 chr5A.!!$R2 3388
2 TraesCS5D01G159800 chr5B 282272728 282276287 3559 True 1279.75 2560 90.89775 1 3831 4 chr5B.!!$R1 3830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 613 1.063912 TGCACGAACAAGAAGCAAGTG 59.936 47.619 0.0 0.0 31.42 3.16 F
1933 1954 0.537188 CACAGGTACGCAAGGGAGAT 59.463 55.000 0.0 0.0 46.39 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2714 0.179045 ACATGCATAGGGGTTCGCTC 60.179 55.0 0.0 0.0 0.0 5.03 R
3695 4275 0.100503 GTCAAAAGCAGCACCAACGT 59.899 50.0 0.0 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.048512 CCACTGGGATAACTAAAACCTCTAAG 58.951 42.308 0.00 0.00 35.59 2.18
175 176 5.830000 ATGGTCAATTGATCACATGTCTG 57.170 39.130 23.35 0.00 38.10 3.51
608 611 2.473530 TTGCACGAACAAGAAGCAAG 57.526 45.000 0.00 0.00 39.95 4.01
610 613 1.063912 TGCACGAACAAGAAGCAAGTG 59.936 47.619 0.00 0.00 31.42 3.16
719 722 8.301730 CCATTAATGGCATATGAAATTGTGTC 57.698 34.615 21.32 0.00 41.75 3.67
720 723 7.385752 CCATTAATGGCATATGAAATTGTGTCC 59.614 37.037 21.32 0.00 41.75 4.02
721 724 5.936187 AATGGCATATGAAATTGTGTCCA 57.064 34.783 6.97 0.97 0.00 4.02
722 725 5.936187 ATGGCATATGAAATTGTGTCCAA 57.064 34.783 6.97 0.00 34.45 3.53
723 726 5.735285 TGGCATATGAAATTGTGTCCAAA 57.265 34.783 6.97 0.00 33.44 3.28
724 727 6.106648 TGGCATATGAAATTGTGTCCAAAA 57.893 33.333 6.97 0.00 33.44 2.44
725 728 6.164876 TGGCATATGAAATTGTGTCCAAAAG 58.835 36.000 6.97 0.00 33.44 2.27
726 729 6.014755 TGGCATATGAAATTGTGTCCAAAAGA 60.015 34.615 6.97 0.00 33.44 2.52
727 730 7.043565 GGCATATGAAATTGTGTCCAAAAGAT 58.956 34.615 6.97 0.00 33.44 2.40
728 731 7.550196 GGCATATGAAATTGTGTCCAAAAGATT 59.450 33.333 6.97 0.00 33.44 2.40
1093 1098 1.148310 CTCCTTGCCACAACAGTACG 58.852 55.000 0.00 0.00 0.00 3.67
1340 1345 1.409381 CCCCATGGAAGAGAAGAAGGC 60.409 57.143 15.22 0.00 0.00 4.35
1537 1542 1.000163 TCTCGAGAAAACGCAGCTTCT 60.000 47.619 14.01 0.00 35.97 2.85
1545 1551 4.811208 GAAAACGCAGCTTCTTTGTTTTC 58.189 39.130 14.41 14.41 46.06 2.29
1624 1645 8.068892 TGTTTGGTTACACAGTTTCCTATTTT 57.931 30.769 0.00 0.00 0.00 1.82
1633 1654 8.472007 ACACAGTTTCCTATTTTATTTGTCCA 57.528 30.769 0.00 0.00 0.00 4.02
1634 1655 9.088987 ACACAGTTTCCTATTTTATTTGTCCAT 57.911 29.630 0.00 0.00 0.00 3.41
1742 1763 2.289133 GCTATGTCCAGTAGCTTAGGGC 60.289 54.545 0.00 0.00 41.00 5.19
1870 1891 2.580322 TCTCTCATCTCACTCTGACCCT 59.420 50.000 0.00 0.00 0.00 4.34
1933 1954 0.537188 CACAGGTACGCAAGGGAGAT 59.463 55.000 0.00 0.00 46.39 2.75
1972 1993 1.068121 CAGTCCCAGGTTCCTTCCTT 58.932 55.000 0.00 0.00 35.37 3.36
2040 2063 9.219603 CTTACCTTTTTCTGTCAATCTGATGTA 57.780 33.333 0.00 0.00 0.00 2.29
2041 2064 9.739276 TTACCTTTTTCTGTCAATCTGATGTAT 57.261 29.630 0.00 0.00 0.00 2.29
2043 2066 9.911788 ACCTTTTTCTGTCAATCTGATGTATAT 57.088 29.630 0.00 0.00 0.00 0.86
2180 2653 8.484214 TGCATCTATAAGGAAGTCAAGAGTAT 57.516 34.615 0.00 0.00 0.00 2.12
2181 2654 9.588096 TGCATCTATAAGGAAGTCAAGAGTATA 57.412 33.333 0.00 0.00 0.00 1.47
2245 2718 4.169508 CAGAATTCGGATAGTATGGAGCG 58.830 47.826 0.00 0.00 0.00 5.03
2255 2728 1.971357 AGTATGGAGCGAACCCCTATG 59.029 52.381 0.00 0.00 0.00 2.23
2258 2731 1.344953 TGGAGCGAACCCCTATGCAT 61.345 55.000 3.79 3.79 0.00 3.96
2265 2787 3.493699 GCGAACCCCTATGCATGTAGTTA 60.494 47.826 10.16 0.00 0.00 2.24
2274 2796 8.543774 CCCCTATGCATGTAGTTAATAAGATCT 58.456 37.037 10.16 0.00 0.00 2.75
2307 2829 9.607333 TTGGTATGAATTATGATACTCTCTCCT 57.393 33.333 0.00 0.00 0.00 3.69
2325 2847 7.548097 TCTCTCCTATCCATATTAATTGTCGC 58.452 38.462 0.00 0.00 0.00 5.19
2349 2896 7.692291 CGCTGATTTAGTACAACGAATCAAAAT 59.308 33.333 0.00 0.00 36.16 1.82
2376 2923 7.945033 TTGATTTTAATTCAAGTTGACCAGC 57.055 32.000 4.68 0.00 0.00 4.85
2377 2924 7.048629 TGATTTTAATTCAAGTTGACCAGCA 57.951 32.000 4.68 0.00 0.00 4.41
2378 2925 7.669427 TGATTTTAATTCAAGTTGACCAGCAT 58.331 30.769 4.68 0.00 0.00 3.79
2379 2926 8.801299 TGATTTTAATTCAAGTTGACCAGCATA 58.199 29.630 4.68 0.00 0.00 3.14
2380 2927 8.986477 ATTTTAATTCAAGTTGACCAGCATAC 57.014 30.769 4.68 0.00 0.00 2.39
2381 2928 7.517614 TTTAATTCAAGTTGACCAGCATACA 57.482 32.000 4.68 0.00 0.00 2.29
2382 2929 7.701539 TTAATTCAAGTTGACCAGCATACAT 57.298 32.000 4.68 0.00 0.00 2.29
2383 2930 8.800370 TTAATTCAAGTTGACCAGCATACATA 57.200 30.769 4.68 0.00 0.00 2.29
2384 2931 6.683974 ATTCAAGTTGACCAGCATACATAC 57.316 37.500 4.68 0.00 0.00 2.39
2385 2932 5.159273 TCAAGTTGACCAGCATACATACA 57.841 39.130 0.08 0.00 0.00 2.29
2386 2933 5.744171 TCAAGTTGACCAGCATACATACAT 58.256 37.500 0.08 0.00 0.00 2.29
2387 2934 6.179756 TCAAGTTGACCAGCATACATACATT 58.820 36.000 0.08 0.00 0.00 2.71
2388 2935 6.093909 TCAAGTTGACCAGCATACATACATTG 59.906 38.462 0.08 0.00 0.00 2.82
2411 2958 2.637947 TGCGTGCCTATTTAAGCATCA 58.362 42.857 0.00 0.00 41.86 3.07
2412 2959 3.213506 TGCGTGCCTATTTAAGCATCAT 58.786 40.909 0.00 0.00 41.86 2.45
2413 2960 4.384940 TGCGTGCCTATTTAAGCATCATA 58.615 39.130 0.00 0.00 41.86 2.15
2426 2973 8.995027 TTTAAGCATCATAGTGAATTATGGGT 57.005 30.769 0.00 0.00 32.95 4.51
2428 2975 9.725019 TTAAGCATCATAGTGAATTATGGGTAG 57.275 33.333 0.00 0.00 32.95 3.18
2432 2979 5.551233 TCATAGTGAATTATGGGTAGCAGC 58.449 41.667 0.00 0.00 32.95 5.25
2444 2991 3.505680 TGGGTAGCAGCTTTTACATGTTG 59.494 43.478 2.30 0.00 0.00 3.33
2445 2992 3.506067 GGGTAGCAGCTTTTACATGTTGT 59.494 43.478 2.30 0.00 0.00 3.32
2446 2993 4.022329 GGGTAGCAGCTTTTACATGTTGTT 60.022 41.667 2.30 0.00 0.00 2.83
2462 3009 3.259064 GTTGTTATGCGCCTAACTCTCA 58.741 45.455 28.05 11.76 33.62 3.27
2464 3011 3.717707 TGTTATGCGCCTAACTCTCATC 58.282 45.455 28.05 8.14 33.62 2.92
2466 3013 0.747255 ATGCGCCTAACTCTCATCGT 59.253 50.000 4.18 0.00 0.00 3.73
2472 3019 2.605366 GCCTAACTCTCATCGTCAAAGC 59.395 50.000 0.00 0.00 0.00 3.51
2473 3020 3.849911 CCTAACTCTCATCGTCAAAGCA 58.150 45.455 0.00 0.00 0.00 3.91
2497 3049 4.924305 TTATGGCATCCTTTGATCTTGC 57.076 40.909 1.65 0.00 0.00 4.01
2498 3050 2.519771 TGGCATCCTTTGATCTTGCT 57.480 45.000 0.00 0.00 0.00 3.91
2507 3059 0.749091 TTGATCTTGCTGGGGCGATG 60.749 55.000 0.00 0.00 42.25 3.84
2508 3060 1.146930 GATCTTGCTGGGGCGATGA 59.853 57.895 0.00 0.00 42.25 2.92
2509 3061 0.250640 GATCTTGCTGGGGCGATGAT 60.251 55.000 0.00 0.00 42.25 2.45
2512 3064 0.394192 CTTGCTGGGGCGATGATAGA 59.606 55.000 0.00 0.00 42.25 1.98
2513 3065 0.106708 TTGCTGGGGCGATGATAGAC 59.893 55.000 0.00 0.00 42.25 2.59
2514 3066 1.373497 GCTGGGGCGATGATAGACG 60.373 63.158 0.00 0.00 0.00 4.18
2515 3067 1.290324 CTGGGGCGATGATAGACGG 59.710 63.158 0.00 0.00 0.00 4.79
2516 3068 2.159819 CTGGGGCGATGATAGACGGG 62.160 65.000 0.00 0.00 0.00 5.28
2517 3069 2.657237 GGGCGATGATAGACGGGG 59.343 66.667 0.00 0.00 0.00 5.73
2518 3070 2.657237 GGCGATGATAGACGGGGG 59.343 66.667 0.00 0.00 0.00 5.40
2558 3110 2.875087 AGGCAACACGTTTAAAACCC 57.125 45.000 0.00 0.00 41.41 4.11
2564 3116 4.319984 GCAACACGTTTAAAACCCTCTAGG 60.320 45.833 0.00 0.00 43.78 3.02
2586 3138 4.282195 GGTAGATCCAGCTAGCTTGTACAT 59.718 45.833 16.46 0.94 36.28 2.29
2605 3157 7.351981 TGTACATTTTCTGAAGTTTCGACATG 58.648 34.615 0.00 0.00 0.00 3.21
2613 3165 9.863845 TTTCTGAAGTTTCGACATGTACATATA 57.136 29.630 8.32 0.00 0.00 0.86
2623 3175 7.868775 TCGACATGTACATATACTGAACTACC 58.131 38.462 8.32 0.00 32.00 3.18
2662 3214 9.686683 TGATCAATATACTAGTATGCTGCTAGA 57.313 33.333 23.09 12.08 39.25 2.43
2665 3217 9.913310 TCAATATACTAGTATGCTGCTAGATCT 57.087 33.333 23.09 0.00 39.25 2.75
2668 3220 5.132897 ACTAGTATGCTGCTAGATCTTGC 57.867 43.478 20.47 20.47 39.25 4.01
2671 3223 1.138568 ATGCTGCTAGATCTTGCCCT 58.861 50.000 23.51 5.58 0.00 5.19
2703 3255 6.734137 TGCACTGACTTTAGTATTTTGTTGG 58.266 36.000 0.00 0.00 0.00 3.77
2783 3335 2.467838 CATGCAGTCCAGATACGTGAG 58.532 52.381 0.00 0.00 0.00 3.51
2788 3340 3.182967 CAGTCCAGATACGTGAGAAAGC 58.817 50.000 0.00 0.00 0.00 3.51
2798 3350 3.668447 ACGTGAGAAAGCTGATGACATT 58.332 40.909 0.00 0.00 0.00 2.71
3006 3563 2.454832 CTTCTGCAACCCTCGAGGCA 62.455 60.000 26.87 18.82 40.58 4.75
3182 3739 2.413142 GCCTGCAGCTTGATCCACC 61.413 63.158 8.66 0.00 38.99 4.61
3183 3740 1.001764 CCTGCAGCTTGATCCACCA 60.002 57.895 8.66 0.00 0.00 4.17
3184 3741 0.395311 CCTGCAGCTTGATCCACCAT 60.395 55.000 8.66 0.00 0.00 3.55
3185 3742 1.134007 CCTGCAGCTTGATCCACCATA 60.134 52.381 8.66 0.00 0.00 2.74
3186 3743 1.945394 CTGCAGCTTGATCCACCATAC 59.055 52.381 0.00 0.00 0.00 2.39
3257 3827 5.435686 TGAATCTGTTATAGGTTGCCAGT 57.564 39.130 0.00 0.00 27.17 4.00
3258 3828 5.185454 TGAATCTGTTATAGGTTGCCAGTG 58.815 41.667 0.00 0.00 27.17 3.66
3263 3833 3.073209 TGTTATAGGTTGCCAGTGGTTGA 59.927 43.478 11.74 0.00 0.00 3.18
3270 3840 3.003480 GTTGCCAGTGGTTGAGAGATAC 58.997 50.000 11.74 0.00 0.00 2.24
3271 3841 2.256306 TGCCAGTGGTTGAGAGATACA 58.744 47.619 11.74 0.00 0.00 2.29
3273 3843 2.234908 GCCAGTGGTTGAGAGATACAGT 59.765 50.000 11.74 0.00 0.00 3.55
3274 3844 3.447586 GCCAGTGGTTGAGAGATACAGTA 59.552 47.826 11.74 0.00 0.00 2.74
3275 3845 4.100189 GCCAGTGGTTGAGAGATACAGTAT 59.900 45.833 11.74 0.00 0.00 2.12
3276 3846 5.595885 CCAGTGGTTGAGAGATACAGTATG 58.404 45.833 0.00 0.00 46.00 2.39
3277 3847 5.452496 CCAGTGGTTGAGAGATACAGTATGG 60.452 48.000 0.00 0.00 43.62 2.74
3279 3849 3.388024 TGGTTGAGAGATACAGTATGGGC 59.612 47.826 0.00 0.00 43.62 5.36
3280 3850 3.388024 GGTTGAGAGATACAGTATGGGCA 59.612 47.826 0.00 0.00 43.62 5.36
3281 3851 4.040952 GGTTGAGAGATACAGTATGGGCAT 59.959 45.833 0.00 0.00 43.62 4.40
3282 3852 5.233988 GTTGAGAGATACAGTATGGGCATC 58.766 45.833 0.00 0.00 43.62 3.91
3283 3853 4.482990 TGAGAGATACAGTATGGGCATCA 58.517 43.478 0.00 0.00 43.62 3.07
3310 3884 9.317936 TGCATGTAATTTGTTTGTACAATTTGA 57.682 25.926 9.56 0.00 43.43 2.69
3318 3892 7.475771 TTGTTTGTACAATTTGAATCCTTGC 57.524 32.000 9.56 0.00 39.29 4.01
3430 4004 2.774007 CGTCATCGTTGAATCAAAGGC 58.226 47.619 8.90 0.00 32.48 4.35
3431 4005 2.774007 GTCATCGTTGAATCAAAGGCG 58.226 47.619 8.90 3.87 32.48 5.52
3432 4006 2.415168 GTCATCGTTGAATCAAAGGCGA 59.585 45.455 8.90 9.00 32.48 5.54
3434 4008 3.309682 TCATCGTTGAATCAAAGGCGATC 59.690 43.478 14.34 0.00 37.03 3.69
3446 4020 1.425428 GGCGATCAGGCAAAACTCG 59.575 57.895 6.31 0.00 45.92 4.18
3447 4021 1.298859 GGCGATCAGGCAAAACTCGT 61.299 55.000 6.31 0.00 45.92 4.18
3448 4022 0.517316 GCGATCAGGCAAAACTCGTT 59.483 50.000 0.00 0.00 0.00 3.85
3449 4023 1.725931 GCGATCAGGCAAAACTCGTTG 60.726 52.381 0.00 0.00 0.00 4.10
3450 4024 1.135972 CGATCAGGCAAAACTCGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
3453 4027 2.050442 GGCAAAACTCGTTGGCCG 60.050 61.111 0.00 0.00 45.69 6.13
3454 4028 2.729491 GCAAAACTCGTTGGCCGC 60.729 61.111 0.00 0.00 36.19 6.53
3455 4029 3.030652 CAAAACTCGTTGGCCGCT 58.969 55.556 0.00 0.00 36.19 5.52
3456 4030 1.082104 CAAAACTCGTTGGCCGCTC 60.082 57.895 0.00 0.00 36.19 5.03
3457 4031 2.258726 AAAACTCGTTGGCCGCTCC 61.259 57.895 0.00 0.00 36.19 4.70
3458 4032 2.676163 AAAACTCGTTGGCCGCTCCT 62.676 55.000 0.00 0.00 36.19 3.69
3459 4033 3.591254 AACTCGTTGGCCGCTCCTC 62.591 63.158 0.00 0.00 36.19 3.71
3460 4034 3.764466 CTCGTTGGCCGCTCCTCT 61.764 66.667 0.00 0.00 36.19 3.69
3461 4035 3.997064 CTCGTTGGCCGCTCCTCTG 62.997 68.421 0.00 0.00 36.19 3.35
3463 4037 4.021925 GTTGGCCGCTCCTCTGGT 62.022 66.667 0.00 0.00 35.26 4.00
3464 4038 3.249189 TTGGCCGCTCCTCTGGTT 61.249 61.111 0.00 0.00 35.26 3.67
3465 4039 2.829384 TTGGCCGCTCCTCTGGTTT 61.829 57.895 0.00 0.00 35.26 3.27
3466 4040 2.436824 GGCCGCTCCTCTGGTTTC 60.437 66.667 0.00 0.00 0.00 2.78
3467 4041 2.436824 GCCGCTCCTCTGGTTTCC 60.437 66.667 0.00 0.00 0.00 3.13
3468 4042 2.960688 GCCGCTCCTCTGGTTTCCT 61.961 63.158 0.00 0.00 0.00 3.36
3469 4043 1.219393 CCGCTCCTCTGGTTTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
3470 4044 1.261238 CCGCTCCTCTGGTTTCCTCT 61.261 60.000 0.00 0.00 0.00 3.69
3471 4045 0.108424 CGCTCCTCTGGTTTCCTCTG 60.108 60.000 0.00 0.00 0.00 3.35
3472 4046 0.251634 GCTCCTCTGGTTTCCTCTGG 59.748 60.000 0.00 0.00 0.00 3.86
3473 4047 0.908198 CTCCTCTGGTTTCCTCTGGG 59.092 60.000 0.00 0.00 0.00 4.45
3474 4048 0.491823 TCCTCTGGTTTCCTCTGGGA 59.508 55.000 0.00 0.00 40.36 4.37
3475 4049 1.081174 TCCTCTGGTTTCCTCTGGGAT 59.919 52.381 0.00 0.00 41.87 3.85
3476 4050 1.488393 CCTCTGGTTTCCTCTGGGATC 59.512 57.143 0.00 0.00 41.87 3.36
3477 4051 2.476199 CTCTGGTTTCCTCTGGGATCT 58.524 52.381 0.00 0.00 41.87 2.75
3478 4052 2.843113 CTCTGGTTTCCTCTGGGATCTT 59.157 50.000 0.00 0.00 41.87 2.40
3479 4053 4.033709 CTCTGGTTTCCTCTGGGATCTTA 58.966 47.826 0.00 0.00 41.87 2.10
3480 4054 4.435137 TCTGGTTTCCTCTGGGATCTTAA 58.565 43.478 0.00 0.00 41.87 1.85
3481 4055 4.849810 TCTGGTTTCCTCTGGGATCTTAAA 59.150 41.667 0.00 0.00 41.87 1.52
3482 4056 5.312178 TCTGGTTTCCTCTGGGATCTTAAAA 59.688 40.000 0.00 0.00 41.87 1.52
3483 4057 6.011628 TCTGGTTTCCTCTGGGATCTTAAAAT 60.012 38.462 0.00 0.00 41.87 1.82
3484 4058 6.561294 TGGTTTCCTCTGGGATCTTAAAATT 58.439 36.000 0.00 0.00 41.87 1.82
3485 4059 7.016296 TGGTTTCCTCTGGGATCTTAAAATTT 58.984 34.615 0.00 0.00 41.87 1.82
3486 4060 7.178451 TGGTTTCCTCTGGGATCTTAAAATTTC 59.822 37.037 0.00 0.00 41.87 2.17
3487 4061 7.251281 GTTTCCTCTGGGATCTTAAAATTTCG 58.749 38.462 0.00 0.00 41.87 3.46
3488 4062 5.437060 TCCTCTGGGATCTTAAAATTTCGG 58.563 41.667 0.00 0.00 36.57 4.30
3489 4063 5.045140 TCCTCTGGGATCTTAAAATTTCGGT 60.045 40.000 0.00 0.00 36.57 4.69
3490 4064 5.297029 CCTCTGGGATCTTAAAATTTCGGTC 59.703 44.000 0.00 0.00 33.58 4.79
3491 4065 5.811190 TCTGGGATCTTAAAATTTCGGTCA 58.189 37.500 0.00 0.00 0.00 4.02
3492 4066 6.423182 TCTGGGATCTTAAAATTTCGGTCAT 58.577 36.000 0.00 0.00 0.00 3.06
3493 4067 6.318648 TCTGGGATCTTAAAATTTCGGTCATG 59.681 38.462 0.00 0.00 0.00 3.07
3494 4068 5.949354 TGGGATCTTAAAATTTCGGTCATGT 59.051 36.000 0.00 0.00 0.00 3.21
3495 4069 6.435904 TGGGATCTTAAAATTTCGGTCATGTT 59.564 34.615 0.00 0.00 0.00 2.71
3496 4070 7.612244 TGGGATCTTAAAATTTCGGTCATGTTA 59.388 33.333 0.00 0.00 0.00 2.41
3497 4071 8.463607 GGGATCTTAAAATTTCGGTCATGTTAA 58.536 33.333 0.00 0.00 0.00 2.01
3498 4072 9.285770 GGATCTTAAAATTTCGGTCATGTTAAC 57.714 33.333 0.00 0.00 0.00 2.01
3499 4073 9.834628 GATCTTAAAATTTCGGTCATGTTAACA 57.165 29.630 11.41 11.41 0.00 2.41
3500 4074 9.840427 ATCTTAAAATTTCGGTCATGTTAACAG 57.160 29.630 14.65 6.58 0.00 3.16
3511 4085 4.697352 GTCATGTTAACAGGCTGACATTCT 59.303 41.667 25.44 0.00 34.95 2.40
3517 4091 0.747283 CAGGCTGACATTCTCTGGGC 60.747 60.000 9.42 0.00 0.00 5.36
3518 4092 1.452833 GGCTGACATTCTCTGGGCC 60.453 63.158 0.00 0.00 34.02 5.80
3520 4094 1.153289 CTGACATTCTCTGGGCCGG 60.153 63.158 5.83 5.83 0.00 6.13
3522 4096 2.610859 ACATTCTCTGGGCCGGGT 60.611 61.111 13.58 0.00 0.00 5.28
3523 4097 2.124570 CATTCTCTGGGCCGGGTG 60.125 66.667 13.58 6.23 0.00 4.61
3524 4098 2.285368 ATTCTCTGGGCCGGGTGA 60.285 61.111 13.58 8.68 0.00 4.02
3525 4099 2.370445 ATTCTCTGGGCCGGGTGAG 61.370 63.158 13.58 10.59 0.00 3.51
3527 4101 2.765807 CTCTGGGCCGGGTGAGAT 60.766 66.667 13.58 0.00 0.00 2.75
3585 4165 4.917415 GCAGTTATTGACGAAAATTGCACT 59.083 37.500 0.00 0.00 36.29 4.40
3590 4170 9.691362 AGTTATTGACGAAAATTGCACTAAAAT 57.309 25.926 0.00 0.00 0.00 1.82
3630 4210 3.378911 TTTTTCTGAAAACCGGATGCC 57.621 42.857 9.46 0.00 30.07 4.40
3643 4223 1.461091 GGATGCCCACAGATGCCATG 61.461 60.000 0.00 0.00 0.00 3.66
3644 4224 2.083835 GATGCCCACAGATGCCATGC 62.084 60.000 0.00 0.00 0.00 4.06
3656 4236 3.889227 CCATGCGTGGTACTGTGG 58.111 61.111 17.42 0.00 40.83 4.17
3657 4237 2.398554 CCATGCGTGGTACTGTGGC 61.399 63.158 17.42 0.00 40.83 5.01
3658 4238 1.375908 CATGCGTGGTACTGTGGCT 60.376 57.895 0.00 0.00 0.00 4.75
3659 4239 1.079127 ATGCGTGGTACTGTGGCTC 60.079 57.895 0.00 0.00 0.00 4.70
3660 4240 1.544825 ATGCGTGGTACTGTGGCTCT 61.545 55.000 0.00 0.00 0.00 4.09
3661 4241 1.738099 GCGTGGTACTGTGGCTCTG 60.738 63.158 0.00 0.00 0.00 3.35
3662 4242 1.079819 CGTGGTACTGTGGCTCTGG 60.080 63.158 0.00 0.00 0.00 3.86
3663 4243 1.532604 CGTGGTACTGTGGCTCTGGA 61.533 60.000 0.00 0.00 0.00 3.86
3664 4244 0.247736 GTGGTACTGTGGCTCTGGAG 59.752 60.000 0.00 0.00 0.00 3.86
3675 4255 1.227205 CTCTGGAGCATCTCACCGC 60.227 63.158 0.00 0.00 33.73 5.68
3683 4263 1.737735 CATCTCACCGCAGCGAACA 60.738 57.895 18.75 0.00 0.00 3.18
3690 4270 1.512734 CCGCAGCGAACATTTGCTC 60.513 57.895 18.75 0.00 45.93 4.26
3691 4271 1.512734 CGCAGCGAACATTTGCTCC 60.513 57.895 9.98 0.00 45.93 4.70
3693 4273 1.868997 CAGCGAACATTTGCTCCGT 59.131 52.632 3.23 0.00 45.93 4.69
3695 4275 1.463056 CAGCGAACATTTGCTCCGTAA 59.537 47.619 3.23 0.00 45.93 3.18
3696 4276 1.463444 AGCGAACATTTGCTCCGTAAC 59.537 47.619 0.17 0.00 44.47 2.50
3697 4277 1.785518 GCGAACATTTGCTCCGTAACG 60.786 52.381 0.00 0.00 34.69 3.18
3698 4278 1.458064 CGAACATTTGCTCCGTAACGT 59.542 47.619 0.00 0.00 0.00 3.99
3699 4279 2.096614 CGAACATTTGCTCCGTAACGTT 60.097 45.455 5.88 5.88 0.00 3.99
3730 4323 7.334858 TGCTTTTGACCAAAATAACCTTCTTT 58.665 30.769 8.19 0.00 39.29 2.52
3766 4359 6.429385 GTGGATGCAATTTTATTTTTGGTGGA 59.571 34.615 0.00 0.00 0.00 4.02
3769 4362 7.553760 GGATGCAATTTTATTTTTGGTGGATCT 59.446 33.333 0.00 0.00 34.12 2.75
3779 4372 9.627123 TTATTTTTGGTGGATCTAAGAGGTATG 57.373 33.333 0.00 0.00 0.00 2.39
3781 4374 5.871396 TTGGTGGATCTAAGAGGTATGAC 57.129 43.478 0.00 0.00 0.00 3.06
3782 4375 5.144159 TGGTGGATCTAAGAGGTATGACT 57.856 43.478 0.00 0.00 0.00 3.41
3783 4376 5.141182 TGGTGGATCTAAGAGGTATGACTC 58.859 45.833 0.00 0.00 37.77 3.36
3785 4378 5.242838 GGTGGATCTAAGAGGTATGACTCTG 59.757 48.000 2.23 0.00 46.70 3.35
3786 4379 5.830991 GTGGATCTAAGAGGTATGACTCTGT 59.169 44.000 2.23 0.00 46.70 3.41
3787 4380 6.999272 GTGGATCTAAGAGGTATGACTCTGTA 59.001 42.308 2.23 0.00 46.70 2.74
3788 4381 6.999272 TGGATCTAAGAGGTATGACTCTGTAC 59.001 42.308 2.23 0.00 46.70 2.90
3789 4382 6.431852 GGATCTAAGAGGTATGACTCTGTACC 59.568 46.154 2.23 0.00 46.70 3.34
3790 4383 6.323210 TCTAAGAGGTATGACTCTGTACCA 57.677 41.667 11.47 0.00 46.70 3.25
3791 4384 6.358178 TCTAAGAGGTATGACTCTGTACCAG 58.642 44.000 11.47 0.00 46.70 4.00
3792 4385 4.864483 AGAGGTATGACTCTGTACCAGA 57.136 45.455 11.47 0.00 45.70 3.86
3793 4386 5.396057 AGAGGTATGACTCTGTACCAGAT 57.604 43.478 11.47 0.00 45.70 2.90
3794 4387 5.381757 AGAGGTATGACTCTGTACCAGATC 58.618 45.833 11.47 0.00 45.70 2.75
3795 4388 4.475345 AGGTATGACTCTGTACCAGATCC 58.525 47.826 11.47 0.00 42.25 3.36
3796 4389 3.574826 GGTATGACTCTGTACCAGATCCC 59.425 52.174 0.00 0.00 39.92 3.85
3831 4424 2.550277 TTGGCCTGTAGAGATGGAGA 57.450 50.000 3.32 0.00 0.00 3.71
3832 4425 2.079170 TGGCCTGTAGAGATGGAGAG 57.921 55.000 3.32 0.00 0.00 3.20
3833 4426 0.678950 GGCCTGTAGAGATGGAGAGC 59.321 60.000 0.00 0.00 0.00 4.09
3834 4427 1.407936 GCCTGTAGAGATGGAGAGCA 58.592 55.000 0.00 0.00 0.00 4.26
3835 4428 1.969923 GCCTGTAGAGATGGAGAGCAT 59.030 52.381 0.00 0.00 0.00 3.79
3836 4429 2.288948 GCCTGTAGAGATGGAGAGCATG 60.289 54.545 0.00 0.00 0.00 4.06
3837 4430 3.229293 CCTGTAGAGATGGAGAGCATGA 58.771 50.000 0.00 0.00 0.00 3.07
3838 4431 3.833650 CCTGTAGAGATGGAGAGCATGAT 59.166 47.826 0.00 0.00 0.00 2.45
3839 4432 4.283978 CCTGTAGAGATGGAGAGCATGATT 59.716 45.833 0.00 0.00 0.00 2.57
3840 4433 5.211174 TGTAGAGATGGAGAGCATGATTG 57.789 43.478 0.00 0.00 0.00 2.67
3841 4434 3.773418 AGAGATGGAGAGCATGATTGG 57.227 47.619 0.00 0.00 0.00 3.16
3842 4435 3.047115 AGAGATGGAGAGCATGATTGGT 58.953 45.455 0.00 0.00 35.95 3.67
3843 4436 3.458857 AGAGATGGAGAGCATGATTGGTT 59.541 43.478 0.00 0.00 32.62 3.67
3844 4437 4.079901 AGAGATGGAGAGCATGATTGGTTT 60.080 41.667 0.00 0.00 32.62 3.27
3845 4438 3.952323 AGATGGAGAGCATGATTGGTTTG 59.048 43.478 0.00 0.00 32.62 2.93
3846 4439 3.438216 TGGAGAGCATGATTGGTTTGA 57.562 42.857 0.00 0.00 32.62 2.69
3847 4440 3.972133 TGGAGAGCATGATTGGTTTGAT 58.028 40.909 0.00 0.00 32.62 2.57
3848 4441 3.697542 TGGAGAGCATGATTGGTTTGATG 59.302 43.478 0.00 0.00 32.62 3.07
3849 4442 3.490419 GGAGAGCATGATTGGTTTGATGC 60.490 47.826 0.00 0.00 41.29 3.91
3850 4443 2.429610 AGAGCATGATTGGTTTGATGCC 59.570 45.455 0.00 0.00 41.81 4.40
3851 4444 2.166870 GAGCATGATTGGTTTGATGCCA 59.833 45.455 0.00 0.00 41.81 4.92
3891 4484 3.742433 TTGGCAACTACCAAATGTTGG 57.258 42.857 5.46 5.46 46.65 3.77
3902 4495 4.114058 CCAAATGTTGGCTAGTGATTGG 57.886 45.455 0.00 0.00 45.17 3.16
3903 4496 3.511146 CCAAATGTTGGCTAGTGATTGGT 59.489 43.478 0.00 0.00 45.17 3.67
3904 4497 4.021192 CCAAATGTTGGCTAGTGATTGGTT 60.021 41.667 0.00 0.00 45.17 3.67
3905 4498 4.789012 AATGTTGGCTAGTGATTGGTTG 57.211 40.909 0.00 0.00 0.00 3.77
3906 4499 2.513753 TGTTGGCTAGTGATTGGTTGG 58.486 47.619 0.00 0.00 0.00 3.77
3907 4500 1.202348 GTTGGCTAGTGATTGGTTGGC 59.798 52.381 0.00 0.00 0.00 4.52
3908 4501 0.698238 TGGCTAGTGATTGGTTGGCT 59.302 50.000 0.00 0.00 0.00 4.75
3909 4502 1.912731 TGGCTAGTGATTGGTTGGCTA 59.087 47.619 0.00 0.00 0.00 3.93
3910 4503 2.289565 GGCTAGTGATTGGTTGGCTAC 58.710 52.381 0.00 0.00 0.00 3.58
3923 4516 5.468540 GGTTGGCTACCAATTTTTCTTCT 57.531 39.130 13.41 0.00 45.80 2.85
3924 4517 5.470368 GGTTGGCTACCAATTTTTCTTCTC 58.530 41.667 13.41 0.00 45.80 2.87
3925 4518 5.010617 GGTTGGCTACCAATTTTTCTTCTCA 59.989 40.000 13.41 0.00 45.80 3.27
3926 4519 6.462347 GGTTGGCTACCAATTTTTCTTCTCAA 60.462 38.462 13.41 0.00 45.80 3.02
3927 4520 6.084326 TGGCTACCAATTTTTCTTCTCAAC 57.916 37.500 0.00 0.00 0.00 3.18
3928 4521 5.010617 TGGCTACCAATTTTTCTTCTCAACC 59.989 40.000 0.00 0.00 0.00 3.77
3929 4522 5.243954 GGCTACCAATTTTTCTTCTCAACCT 59.756 40.000 0.00 0.00 0.00 3.50
3930 4523 6.382608 GCTACCAATTTTTCTTCTCAACCTC 58.617 40.000 0.00 0.00 0.00 3.85
3931 4524 6.016276 GCTACCAATTTTTCTTCTCAACCTCA 60.016 38.462 0.00 0.00 0.00 3.86
3932 4525 6.149129 ACCAATTTTTCTTCTCAACCTCAC 57.851 37.500 0.00 0.00 0.00 3.51
3933 4526 5.656416 ACCAATTTTTCTTCTCAACCTCACA 59.344 36.000 0.00 0.00 0.00 3.58
3934 4527 6.154363 ACCAATTTTTCTTCTCAACCTCACAA 59.846 34.615 0.00 0.00 0.00 3.33
3935 4528 7.041107 CCAATTTTTCTTCTCAACCTCACAAA 58.959 34.615 0.00 0.00 0.00 2.83
3936 4529 7.548780 CCAATTTTTCTTCTCAACCTCACAAAA 59.451 33.333 0.00 0.00 0.00 2.44
3937 4530 8.934825 CAATTTTTCTTCTCAACCTCACAAAAA 58.065 29.630 0.00 0.00 0.00 1.94
3938 4531 8.707938 ATTTTTCTTCTCAACCTCACAAAAAG 57.292 30.769 0.00 0.00 0.00 2.27
3939 4532 6.834168 TTTCTTCTCAACCTCACAAAAAGT 57.166 33.333 0.00 0.00 0.00 2.66
3940 4533 6.834168 TTCTTCTCAACCTCACAAAAAGTT 57.166 33.333 0.00 0.00 0.00 2.66
3941 4534 6.194796 TCTTCTCAACCTCACAAAAAGTTG 57.805 37.500 0.00 0.00 40.72 3.16
3942 4535 4.370364 TCTCAACCTCACAAAAAGTTGC 57.630 40.909 0.00 0.00 39.51 4.17
3943 4536 3.130340 TCTCAACCTCACAAAAAGTTGCC 59.870 43.478 0.00 0.00 39.51 4.52
3944 4537 2.828520 TCAACCTCACAAAAAGTTGCCA 59.171 40.909 0.00 0.00 39.51 4.92
3945 4538 3.259374 TCAACCTCACAAAAAGTTGCCAA 59.741 39.130 0.00 0.00 39.51 4.52
3946 4539 4.081198 TCAACCTCACAAAAAGTTGCCAAT 60.081 37.500 0.00 0.00 39.51 3.16
3947 4540 5.127845 TCAACCTCACAAAAAGTTGCCAATA 59.872 36.000 0.00 0.00 39.51 1.90
3948 4541 5.806654 ACCTCACAAAAAGTTGCCAATAT 57.193 34.783 0.00 0.00 38.39 1.28
3949 4542 6.173427 ACCTCACAAAAAGTTGCCAATATT 57.827 33.333 0.00 0.00 38.39 1.28
3950 4543 6.591001 ACCTCACAAAAAGTTGCCAATATTT 58.409 32.000 0.00 0.00 38.39 1.40
3951 4544 6.482973 ACCTCACAAAAAGTTGCCAATATTTG 59.517 34.615 9.55 9.55 38.39 2.32
3974 4567 7.941795 TGGCAAATTTTAATTTTGCCAAATG 57.058 28.000 36.06 12.14 46.70 2.32
3975 4568 7.495055 TGGCAAATTTTAATTTTGCCAAATGT 58.505 26.923 36.06 3.26 46.70 2.71
3976 4569 7.983484 TGGCAAATTTTAATTTTGCCAAATGTT 59.017 25.926 36.06 1.44 46.70 2.71
3977 4570 8.274248 GGCAAATTTTAATTTTGCCAAATGTTG 58.726 29.630 33.19 12.47 43.75 3.33
3978 4571 8.274248 GCAAATTTTAATTTTGCCAAATGTTGG 58.726 29.630 20.14 2.50 43.77 3.77
3986 4579 3.702147 CCAAATGTTGGCTTGCCAA 57.298 47.368 21.59 21.59 45.17 4.52
3987 4580 1.964552 CCAAATGTTGGCTTGCCAAA 58.035 45.000 26.12 17.09 45.17 3.28
3988 4581 2.506444 CCAAATGTTGGCTTGCCAAAT 58.494 42.857 26.12 18.32 45.17 2.32
3989 4582 3.672808 CCAAATGTTGGCTTGCCAAATA 58.327 40.909 26.12 18.73 45.17 1.40
3990 4583 4.263435 CCAAATGTTGGCTTGCCAAATAT 58.737 39.130 26.12 19.92 45.17 1.28
3991 4584 4.701171 CCAAATGTTGGCTTGCCAAATATT 59.299 37.500 26.12 23.52 45.17 1.28
3992 4585 5.392165 CCAAATGTTGGCTTGCCAAATATTG 60.392 40.000 26.12 25.13 45.17 1.90
4019 4612 3.123157 CCAATTGTTGGCATCAAACCA 57.877 42.857 14.40 0.00 45.17 3.67
4020 4613 3.474600 CCAATTGTTGGCATCAAACCAA 58.525 40.909 14.40 0.00 45.17 3.67
4029 4622 4.742417 TGGCATCAAACCAATTATGTTCG 58.258 39.130 0.00 0.00 33.12 3.95
4030 4623 4.111916 GGCATCAAACCAATTATGTTCGG 58.888 43.478 0.00 0.00 0.00 4.30
4031 4624 4.142271 GGCATCAAACCAATTATGTTCGGA 60.142 41.667 0.00 0.00 0.00 4.55
4032 4625 5.036737 GCATCAAACCAATTATGTTCGGAG 58.963 41.667 0.00 0.00 0.00 4.63
4033 4626 5.393027 GCATCAAACCAATTATGTTCGGAGT 60.393 40.000 0.00 0.00 0.00 3.85
4034 4627 5.873179 TCAAACCAATTATGTTCGGAGTC 57.127 39.130 0.00 0.00 0.00 3.36
4035 4628 5.309638 TCAAACCAATTATGTTCGGAGTCA 58.690 37.500 0.00 0.00 0.00 3.41
4036 4629 5.180492 TCAAACCAATTATGTTCGGAGTCAC 59.820 40.000 0.00 0.00 0.00 3.67
4037 4630 4.553330 ACCAATTATGTTCGGAGTCACT 57.447 40.909 0.00 0.00 0.00 3.41
4038 4631 4.906618 ACCAATTATGTTCGGAGTCACTT 58.093 39.130 0.00 0.00 0.00 3.16
4039 4632 5.313712 ACCAATTATGTTCGGAGTCACTTT 58.686 37.500 0.00 0.00 0.00 2.66
4040 4633 5.768164 ACCAATTATGTTCGGAGTCACTTTT 59.232 36.000 0.00 0.00 0.00 2.27
4041 4634 6.264518 ACCAATTATGTTCGGAGTCACTTTTT 59.735 34.615 0.00 0.00 0.00 1.94
4042 4635 6.582295 CCAATTATGTTCGGAGTCACTTTTTG 59.418 38.462 0.00 0.00 0.00 2.44
4043 4636 3.626028 ATGTTCGGAGTCACTTTTTGC 57.374 42.857 0.00 0.00 0.00 3.68
4044 4637 1.673920 TGTTCGGAGTCACTTTTTGCC 59.326 47.619 0.00 0.00 0.00 4.52
4045 4638 0.941542 TTCGGAGTCACTTTTTGCCG 59.058 50.000 0.00 0.00 40.06 5.69
4046 4639 0.105224 TCGGAGTCACTTTTTGCCGA 59.895 50.000 0.50 0.50 44.60 5.54
4047 4640 0.512952 CGGAGTCACTTTTTGCCGAG 59.487 55.000 0.00 0.00 41.11 4.63
4048 4641 1.872237 CGGAGTCACTTTTTGCCGAGA 60.872 52.381 0.00 0.00 41.11 4.04
4049 4642 2.427506 GGAGTCACTTTTTGCCGAGAT 58.572 47.619 0.00 0.00 0.00 2.75
4050 4643 3.596214 GGAGTCACTTTTTGCCGAGATA 58.404 45.455 0.00 0.00 0.00 1.98
4051 4644 3.371285 GGAGTCACTTTTTGCCGAGATAC 59.629 47.826 0.00 0.00 0.00 2.24
4052 4645 4.246458 GAGTCACTTTTTGCCGAGATACT 58.754 43.478 0.00 0.00 0.00 2.12
4053 4646 4.246458 AGTCACTTTTTGCCGAGATACTC 58.754 43.478 0.00 0.00 0.00 2.59
4054 4647 3.994392 GTCACTTTTTGCCGAGATACTCA 59.006 43.478 0.00 0.00 0.00 3.41
4055 4648 4.092091 GTCACTTTTTGCCGAGATACTCAG 59.908 45.833 0.00 0.00 0.00 3.35
4056 4649 3.372206 CACTTTTTGCCGAGATACTCAGG 59.628 47.826 0.00 0.00 0.00 3.86
4057 4650 2.024176 TTTTGCCGAGATACTCAGGC 57.976 50.000 19.33 19.33 44.23 4.85
4059 4652 2.826337 TGCCGAGATACTCAGGCAT 58.174 52.632 22.45 0.00 46.39 4.40
4060 4653 1.123077 TGCCGAGATACTCAGGCATT 58.877 50.000 22.45 0.00 46.39 3.56
4061 4654 2.316108 TGCCGAGATACTCAGGCATTA 58.684 47.619 22.45 9.44 46.39 1.90
4062 4655 2.698274 TGCCGAGATACTCAGGCATTAA 59.302 45.455 22.45 9.20 46.39 1.40
4063 4656 3.133901 TGCCGAGATACTCAGGCATTAAA 59.866 43.478 22.45 8.96 46.39 1.52
4064 4657 3.495001 GCCGAGATACTCAGGCATTAAAC 59.505 47.826 20.39 0.00 43.80 2.01
4065 4658 3.736252 CCGAGATACTCAGGCATTAAACG 59.264 47.826 0.00 0.00 0.00 3.60
4066 4659 4.360563 CGAGATACTCAGGCATTAAACGT 58.639 43.478 0.00 0.00 0.00 3.99
4067 4660 4.207224 CGAGATACTCAGGCATTAAACGTG 59.793 45.833 0.00 0.00 0.00 4.49
4068 4661 5.086104 AGATACTCAGGCATTAAACGTGT 57.914 39.130 0.00 0.00 0.00 4.49
4069 4662 5.488341 AGATACTCAGGCATTAAACGTGTT 58.512 37.500 0.00 0.00 0.00 3.32
4070 4663 5.581085 AGATACTCAGGCATTAAACGTGTTC 59.419 40.000 0.00 0.00 0.00 3.18
4071 4664 2.478894 ACTCAGGCATTAAACGTGTTCG 59.521 45.455 0.00 0.00 43.34 3.95
4072 4665 1.801771 TCAGGCATTAAACGTGTTCGG 59.198 47.619 0.00 0.00 41.85 4.30
4073 4666 1.801771 CAGGCATTAAACGTGTTCGGA 59.198 47.619 0.00 0.00 41.85 4.55
4074 4667 2.418628 CAGGCATTAAACGTGTTCGGAT 59.581 45.455 0.00 0.00 41.85 4.18
4075 4668 2.418628 AGGCATTAAACGTGTTCGGATG 59.581 45.455 0.00 0.00 41.85 3.51
4076 4669 2.477189 GGCATTAAACGTGTTCGGATGG 60.477 50.000 0.00 0.00 41.85 3.51
4077 4670 2.417239 GCATTAAACGTGTTCGGATGGA 59.583 45.455 0.00 0.00 41.85 3.41
4078 4671 3.485216 GCATTAAACGTGTTCGGATGGAG 60.485 47.826 0.00 0.00 41.85 3.86
4079 4672 3.663995 TTAAACGTGTTCGGATGGAGA 57.336 42.857 0.00 0.00 41.85 3.71
4080 4673 1.792006 AAACGTGTTCGGATGGAGAC 58.208 50.000 0.00 0.00 41.85 3.36
4081 4674 0.966920 AACGTGTTCGGATGGAGACT 59.033 50.000 0.00 0.00 41.85 3.24
4082 4675 0.243907 ACGTGTTCGGATGGAGACTG 59.756 55.000 0.00 0.00 41.85 3.51
4083 4676 0.526211 CGTGTTCGGATGGAGACTGA 59.474 55.000 0.00 0.00 0.00 3.41
4084 4677 1.732732 CGTGTTCGGATGGAGACTGAC 60.733 57.143 0.00 0.00 0.00 3.51
4085 4678 1.272490 GTGTTCGGATGGAGACTGACA 59.728 52.381 0.00 0.00 0.00 3.58
4086 4679 2.093973 GTGTTCGGATGGAGACTGACAT 60.094 50.000 0.00 0.00 0.00 3.06
4087 4680 2.094026 TGTTCGGATGGAGACTGACATG 60.094 50.000 0.00 0.00 0.00 3.21
4088 4681 1.114627 TCGGATGGAGACTGACATGG 58.885 55.000 0.00 0.00 0.00 3.66
4089 4682 1.114627 CGGATGGAGACTGACATGGA 58.885 55.000 0.00 0.00 0.00 3.41
4090 4683 1.690893 CGGATGGAGACTGACATGGAT 59.309 52.381 0.00 0.00 0.00 3.41
4091 4684 2.288702 CGGATGGAGACTGACATGGATC 60.289 54.545 0.00 0.00 0.00 3.36
4092 4685 2.288702 GGATGGAGACTGACATGGATCG 60.289 54.545 0.00 0.00 0.00 3.69
4093 4686 0.461548 TGGAGACTGACATGGATCGC 59.538 55.000 0.00 0.00 0.00 4.58
4094 4687 0.749649 GGAGACTGACATGGATCGCT 59.250 55.000 0.00 0.00 0.00 4.93
4095 4688 1.537776 GGAGACTGACATGGATCGCTG 60.538 57.143 0.00 0.00 0.00 5.18
4096 4689 1.406898 GAGACTGACATGGATCGCTGA 59.593 52.381 0.00 0.00 0.00 4.26
4097 4690 1.135915 AGACTGACATGGATCGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
4098 4691 0.176680 ACTGACATGGATCGCTGACC 59.823 55.000 0.00 0.00 0.00 4.02
4099 4692 0.531532 CTGACATGGATCGCTGACCC 60.532 60.000 0.00 0.00 0.00 4.46
4100 4693 1.592669 GACATGGATCGCTGACCCG 60.593 63.158 0.00 0.00 0.00 5.28
4101 4694 2.016393 GACATGGATCGCTGACCCGA 62.016 60.000 0.00 0.00 41.98 5.14
4102 4695 1.592669 CATGGATCGCTGACCCGAC 60.593 63.158 0.00 0.00 40.40 4.79
4103 4696 2.797278 ATGGATCGCTGACCCGACC 61.797 63.158 0.00 0.00 40.40 4.79
4104 4697 4.222847 GGATCGCTGACCCGACCC 62.223 72.222 0.00 0.00 40.40 4.46
4105 4698 3.458163 GATCGCTGACCCGACCCA 61.458 66.667 0.00 0.00 40.40 4.51
4106 4699 3.000819 ATCGCTGACCCGACCCAA 61.001 61.111 0.00 0.00 40.40 4.12
4107 4700 2.515996 GATCGCTGACCCGACCCAAA 62.516 60.000 0.00 0.00 40.40 3.28
4108 4701 2.119484 ATCGCTGACCCGACCCAAAA 62.119 55.000 0.00 0.00 40.40 2.44
4109 4702 1.894756 CGCTGACCCGACCCAAAAA 60.895 57.895 0.00 0.00 0.00 1.94
4110 4703 1.241315 CGCTGACCCGACCCAAAAAT 61.241 55.000 0.00 0.00 0.00 1.82
4111 4704 0.966179 GCTGACCCGACCCAAAAATT 59.034 50.000 0.00 0.00 0.00 1.82
4112 4705 1.343142 GCTGACCCGACCCAAAAATTT 59.657 47.619 0.00 0.00 0.00 1.82
4113 4706 2.866065 GCTGACCCGACCCAAAAATTTG 60.866 50.000 0.00 0.00 37.90 2.32
4114 4707 2.625790 CTGACCCGACCCAAAAATTTGA 59.374 45.455 7.44 0.00 40.55 2.69
4115 4708 2.625790 TGACCCGACCCAAAAATTTGAG 59.374 45.455 7.44 0.00 40.55 3.02
4116 4709 1.967779 ACCCGACCCAAAAATTTGAGG 59.032 47.619 7.44 9.04 40.55 3.86
4117 4710 1.337728 CCCGACCCAAAAATTTGAGGC 60.338 52.381 7.44 0.00 40.55 4.70
4118 4711 1.337728 CCGACCCAAAAATTTGAGGCC 60.338 52.381 7.44 0.00 40.55 5.19
4119 4712 1.342819 CGACCCAAAAATTTGAGGCCA 59.657 47.619 5.01 0.00 40.55 5.36
4120 4713 2.224161 CGACCCAAAAATTTGAGGCCAA 60.224 45.455 5.01 0.00 40.55 4.52
4121 4714 3.556843 CGACCCAAAAATTTGAGGCCAAT 60.557 43.478 5.01 0.00 40.55 3.16
4122 4715 3.752747 GACCCAAAAATTTGAGGCCAATG 59.247 43.478 5.01 0.00 40.55 2.82
4123 4716 3.083293 CCCAAAAATTTGAGGCCAATGG 58.917 45.455 5.01 0.00 40.55 3.16
4124 4717 3.083293 CCAAAAATTTGAGGCCAATGGG 58.917 45.455 5.01 0.00 40.55 4.00
4125 4718 3.498301 CCAAAAATTTGAGGCCAATGGGT 60.498 43.478 5.01 0.00 40.55 4.51
4126 4719 3.701205 AAAATTTGAGGCCAATGGGTC 57.299 42.857 5.01 0.00 39.90 4.46
4127 4720 2.323999 AATTTGAGGCCAATGGGTCA 57.676 45.000 5.01 0.00 43.06 4.02
4128 4721 2.555732 ATTTGAGGCCAATGGGTCAT 57.444 45.000 5.01 0.00 43.06 3.06
4129 4722 1.559368 TTTGAGGCCAATGGGTCATG 58.441 50.000 5.01 0.00 43.06 3.07
4130 4723 0.409092 TTGAGGCCAATGGGTCATGT 59.591 50.000 5.01 0.00 43.06 3.21
4131 4724 0.323633 TGAGGCCAATGGGTCATGTG 60.324 55.000 5.01 0.00 43.06 3.21
4132 4725 1.000739 AGGCCAATGGGTCATGTGG 59.999 57.895 5.01 0.00 43.06 4.17
4133 4726 1.000233 GGCCAATGGGTCATGTGGA 60.000 57.895 0.00 0.00 39.19 4.02
4134 4727 1.039233 GGCCAATGGGTCATGTGGAG 61.039 60.000 0.00 0.00 39.19 3.86
4135 4728 0.034186 GCCAATGGGTCATGTGGAGA 60.034 55.000 0.00 0.00 36.17 3.71
4136 4729 2.020694 GCCAATGGGTCATGTGGAGAG 61.021 57.143 0.00 0.00 36.17 3.20
4137 4730 1.386533 CAATGGGTCATGTGGAGAGC 58.613 55.000 0.00 0.00 0.00 4.09
4138 4731 1.064906 CAATGGGTCATGTGGAGAGCT 60.065 52.381 0.00 0.00 34.14 4.09
4139 4732 0.835941 ATGGGTCATGTGGAGAGCTC 59.164 55.000 5.27 5.27 34.14 4.09
4140 4733 0.252421 TGGGTCATGTGGAGAGCTCT 60.252 55.000 18.28 18.28 34.14 4.09
4141 4734 0.908198 GGGTCATGTGGAGAGCTCTT 59.092 55.000 19.36 0.91 34.14 2.85
4142 4735 2.111384 GGGTCATGTGGAGAGCTCTTA 58.889 52.381 19.36 7.65 34.14 2.10
4143 4736 2.703007 GGGTCATGTGGAGAGCTCTTAT 59.297 50.000 19.36 7.72 34.14 1.73
4144 4737 3.494048 GGGTCATGTGGAGAGCTCTTATG 60.494 52.174 19.36 18.38 34.14 1.90
4145 4738 3.494048 GGTCATGTGGAGAGCTCTTATGG 60.494 52.174 19.36 6.23 0.00 2.74
4146 4739 2.702478 TCATGTGGAGAGCTCTTATGGG 59.298 50.000 19.36 6.79 0.00 4.00
4147 4740 2.550277 TGTGGAGAGCTCTTATGGGA 57.450 50.000 19.36 0.00 0.00 4.37
4148 4741 2.111384 TGTGGAGAGCTCTTATGGGAC 58.889 52.381 19.36 8.89 0.00 4.46
4149 4742 1.067821 GTGGAGAGCTCTTATGGGACG 59.932 57.143 19.36 0.00 0.00 4.79
4150 4743 0.032815 GGAGAGCTCTTATGGGACGC 59.967 60.000 19.36 0.82 0.00 5.19
4151 4744 0.032815 GAGAGCTCTTATGGGACGCC 59.967 60.000 19.36 0.00 0.00 5.68
4152 4745 0.397816 AGAGCTCTTATGGGACGCCT 60.398 55.000 11.45 0.00 0.00 5.52
4153 4746 0.249657 GAGCTCTTATGGGACGCCTG 60.250 60.000 6.43 0.00 0.00 4.85
4154 4747 0.978146 AGCTCTTATGGGACGCCTGT 60.978 55.000 0.00 0.00 0.00 4.00
4155 4748 0.811616 GCTCTTATGGGACGCCTGTG 60.812 60.000 0.00 0.00 0.00 3.66
4156 4749 0.537188 CTCTTATGGGACGCCTGTGT 59.463 55.000 0.00 0.00 0.00 3.72
4157 4750 0.249120 TCTTATGGGACGCCTGTGTG 59.751 55.000 0.00 0.00 0.00 3.82
4158 4751 1.369091 CTTATGGGACGCCTGTGTGC 61.369 60.000 0.00 0.00 0.00 4.57
4166 4759 4.294523 GCCTGTGTGCGTCCAATA 57.705 55.556 0.00 0.00 0.00 1.90
4167 4760 2.089854 GCCTGTGTGCGTCCAATAG 58.910 57.895 0.00 0.00 0.00 1.73
4168 4761 0.673644 GCCTGTGTGCGTCCAATAGT 60.674 55.000 0.00 0.00 0.00 2.12
4169 4762 1.404986 GCCTGTGTGCGTCCAATAGTA 60.405 52.381 0.00 0.00 0.00 1.82
4170 4763 2.540515 CCTGTGTGCGTCCAATAGTAG 58.459 52.381 0.00 0.00 0.00 2.57
4171 4764 2.165641 CCTGTGTGCGTCCAATAGTAGA 59.834 50.000 0.00 0.00 0.00 2.59
4172 4765 3.179830 CTGTGTGCGTCCAATAGTAGAC 58.820 50.000 0.00 0.00 0.00 2.59
4173 4766 2.094390 TGTGTGCGTCCAATAGTAGACC 60.094 50.000 0.00 0.00 0.00 3.85
4174 4767 2.165845 GTGTGCGTCCAATAGTAGACCT 59.834 50.000 0.00 0.00 0.00 3.85
4175 4768 2.829720 TGTGCGTCCAATAGTAGACCTT 59.170 45.455 0.00 0.00 0.00 3.50
4176 4769 3.259876 TGTGCGTCCAATAGTAGACCTTT 59.740 43.478 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.843069 TTTTGAAATTAAACTTGCTGAGCC 57.157 33.333 0.23 0.00 0.00 4.70
217 218 6.337356 GTGATTGACCCTTGAAGAAACAAAA 58.663 36.000 0.00 0.00 0.00 2.44
441 444 6.819397 AACTTCAAAAGGTATTAGAGTGCC 57.181 37.500 0.00 0.00 0.00 5.01
520 523 4.989797 TCGAAACGCTAATGTAAAAGTGGA 59.010 37.500 0.00 0.00 0.00 4.02
1093 1098 0.809241 CGCTCAGATGGAGGCTTGAC 60.809 60.000 0.00 0.00 44.22 3.18
1340 1345 2.102070 TACCGGTAAGTTGGCATGTG 57.898 50.000 13.14 0.00 0.00 3.21
1627 1648 8.970859 ACCAAAACAAAATGAAATATGGACAA 57.029 26.923 0.00 0.00 0.00 3.18
1637 1658 8.997323 CCTGCATAAATACCAAAACAAAATGAA 58.003 29.630 0.00 0.00 0.00 2.57
1638 1659 7.605691 CCCTGCATAAATACCAAAACAAAATGA 59.394 33.333 0.00 0.00 0.00 2.57
1639 1660 7.605691 TCCCTGCATAAATACCAAAACAAAATG 59.394 33.333 0.00 0.00 0.00 2.32
1640 1661 7.684529 TCCCTGCATAAATACCAAAACAAAAT 58.315 30.769 0.00 0.00 0.00 1.82
1641 1662 7.067496 TCCCTGCATAAATACCAAAACAAAA 57.933 32.000 0.00 0.00 0.00 2.44
1642 1663 6.672266 TCCCTGCATAAATACCAAAACAAA 57.328 33.333 0.00 0.00 0.00 2.83
1843 1864 3.130869 CAGAGTGAGATGAGAGACCAAGG 59.869 52.174 0.00 0.00 0.00 3.61
1870 1891 1.985159 AGGAGCAAAGTGATACCACCA 59.015 47.619 0.00 0.00 44.22 4.17
1876 1897 4.467438 TCATCAGTGAGGAGCAAAGTGATA 59.533 41.667 2.74 0.00 0.00 2.15
1882 1903 4.183865 CGTTATCATCAGTGAGGAGCAAA 58.816 43.478 13.58 4.98 37.87 3.68
1933 1954 3.781605 TTGCACGGTGACCCATGCA 62.782 57.895 20.66 20.66 45.94 3.96
1972 1993 5.301555 TGAATCTGATCACCAACGTTTACA 58.698 37.500 0.00 0.00 0.00 2.41
2064 2536 8.790718 TGAGAACGTTACTACTTTAGACAAGAT 58.209 33.333 0.00 0.00 0.00 2.40
2180 2653 7.059788 TGCAAAGAAGCCAAGAATATATGGTA 58.940 34.615 0.00 0.00 39.00 3.25
2181 2654 5.893255 TGCAAAGAAGCCAAGAATATATGGT 59.107 36.000 0.00 0.00 39.00 3.55
2223 2696 4.082733 TCGCTCCATACTATCCGAATTCTG 60.083 45.833 3.52 0.00 0.00 3.02
2230 2703 1.067776 GGGTTCGCTCCATACTATCCG 60.068 57.143 0.00 0.00 0.00 4.18
2241 2714 0.179045 ACATGCATAGGGGTTCGCTC 60.179 55.000 0.00 0.00 0.00 5.03
2245 2718 8.154856 TCTTATTAACTACATGCATAGGGGTTC 58.845 37.037 0.00 0.00 0.00 3.62
2302 2824 7.178451 TCAGCGACAATTAATATGGATAGGAGA 59.822 37.037 0.00 0.00 0.00 3.71
2356 2903 7.946207 TGTATGCTGGTCAACTTGAATTAAAA 58.054 30.769 0.00 0.00 0.00 1.52
2360 2907 6.658816 TGTATGTATGCTGGTCAACTTGAATT 59.341 34.615 0.00 0.00 0.00 2.17
2364 2911 6.260377 CAATGTATGTATGCTGGTCAACTTG 58.740 40.000 0.00 0.00 0.00 3.16
2365 2912 5.357878 CCAATGTATGTATGCTGGTCAACTT 59.642 40.000 0.00 0.00 0.00 2.66
2366 2913 4.883585 CCAATGTATGTATGCTGGTCAACT 59.116 41.667 0.00 0.00 0.00 3.16
2367 2914 4.881273 TCCAATGTATGTATGCTGGTCAAC 59.119 41.667 0.00 0.00 0.00 3.18
2368 2915 5.109500 TCCAATGTATGTATGCTGGTCAA 57.891 39.130 0.00 0.00 0.00 3.18
2369 2916 4.769345 TCCAATGTATGTATGCTGGTCA 57.231 40.909 0.00 0.00 0.00 4.02
2370 2917 4.083110 GCATCCAATGTATGTATGCTGGTC 60.083 45.833 0.00 0.00 39.80 4.02
2371 2918 3.822735 GCATCCAATGTATGTATGCTGGT 59.177 43.478 0.00 0.00 39.80 4.00
2372 2919 3.120095 CGCATCCAATGTATGTATGCTGG 60.120 47.826 0.00 0.00 40.56 4.85
2373 2920 3.499537 ACGCATCCAATGTATGTATGCTG 59.500 43.478 0.00 0.00 40.56 4.41
2374 2921 3.499537 CACGCATCCAATGTATGTATGCT 59.500 43.478 0.00 0.00 40.56 3.79
2375 2922 3.813800 CACGCATCCAATGTATGTATGC 58.186 45.455 0.00 0.00 39.59 3.14
2376 2923 3.365264 GGCACGCATCCAATGTATGTATG 60.365 47.826 0.00 0.00 0.00 2.39
2377 2924 2.813754 GGCACGCATCCAATGTATGTAT 59.186 45.455 0.00 0.00 0.00 2.29
2378 2925 2.158827 AGGCACGCATCCAATGTATGTA 60.159 45.455 0.00 0.00 0.00 2.29
2379 2926 1.024271 GGCACGCATCCAATGTATGT 58.976 50.000 0.00 0.00 0.00 2.29
2380 2927 1.311859 AGGCACGCATCCAATGTATG 58.688 50.000 0.00 0.00 0.00 2.39
2381 2928 2.928801 TAGGCACGCATCCAATGTAT 57.071 45.000 0.00 0.00 0.00 2.29
2382 2929 2.928801 ATAGGCACGCATCCAATGTA 57.071 45.000 0.00 0.00 0.00 2.29
2383 2930 2.057137 AATAGGCACGCATCCAATGT 57.943 45.000 0.00 0.00 0.00 2.71
2384 2931 4.539870 CTTAAATAGGCACGCATCCAATG 58.460 43.478 0.00 0.00 0.00 2.82
2385 2932 3.004734 GCTTAAATAGGCACGCATCCAAT 59.995 43.478 0.00 0.00 0.00 3.16
2386 2933 2.357637 GCTTAAATAGGCACGCATCCAA 59.642 45.455 0.00 0.00 0.00 3.53
2387 2934 1.946768 GCTTAAATAGGCACGCATCCA 59.053 47.619 0.00 0.00 0.00 3.41
2388 2935 1.946768 TGCTTAAATAGGCACGCATCC 59.053 47.619 0.00 0.00 33.09 3.51
2411 2958 5.832539 AGCTGCTACCCATAATTCACTAT 57.167 39.130 0.00 0.00 0.00 2.12
2412 2959 5.630415 AAGCTGCTACCCATAATTCACTA 57.370 39.130 0.90 0.00 0.00 2.74
2413 2960 4.510167 AAGCTGCTACCCATAATTCACT 57.490 40.909 0.90 0.00 0.00 3.41
2426 2973 6.321717 GCATAACAACATGTAAAAGCTGCTA 58.678 36.000 0.90 0.00 0.00 3.49
2428 2975 4.030529 CGCATAACAACATGTAAAAGCTGC 59.969 41.667 0.00 4.07 0.00 5.25
2432 2979 4.732784 AGGCGCATAACAACATGTAAAAG 58.267 39.130 10.83 0.00 0.00 2.27
2444 2991 2.726760 CGATGAGAGTTAGGCGCATAAC 59.273 50.000 31.55 31.55 36.16 1.89
2445 2992 2.361119 ACGATGAGAGTTAGGCGCATAA 59.639 45.455 10.97 10.97 0.00 1.90
2446 2993 1.954382 ACGATGAGAGTTAGGCGCATA 59.046 47.619 10.83 2.52 0.00 3.14
2462 3009 4.717233 TGCCATAAATTGCTTTGACGAT 57.283 36.364 0.00 0.00 0.00 3.73
2464 3011 3.798337 GGATGCCATAAATTGCTTTGACG 59.202 43.478 0.00 0.00 0.00 4.35
2466 3013 5.680594 AAGGATGCCATAAATTGCTTTGA 57.319 34.783 0.00 0.00 0.00 2.69
2472 3019 6.202188 GCAAGATCAAAGGATGCCATAAATTG 59.798 38.462 0.00 0.00 32.67 2.32
2473 3020 6.099269 AGCAAGATCAAAGGATGCCATAAATT 59.901 34.615 0.00 0.00 32.67 1.82
2497 3049 1.290324 CCGTCTATCATCGCCCCAG 59.710 63.158 0.00 0.00 0.00 4.45
2498 3050 2.207229 CCCGTCTATCATCGCCCCA 61.207 63.158 0.00 0.00 0.00 4.96
2533 3085 4.722361 TTTAAACGTGTTGCCTTTCCTT 57.278 36.364 0.00 0.00 0.00 3.36
2535 3087 3.552699 GGTTTTAAACGTGTTGCCTTTCC 59.447 43.478 1.52 0.00 0.00 3.13
2536 3088 3.552699 GGGTTTTAAACGTGTTGCCTTTC 59.447 43.478 1.52 0.00 0.00 2.62
2558 3110 4.301072 AGCTAGCTGGATCTACCTAGAG 57.699 50.000 18.57 0.00 39.86 2.43
2564 3116 4.920640 TGTACAAGCTAGCTGGATCTAC 57.079 45.455 26.31 17.04 0.00 2.59
2571 3123 6.148480 ACTTCAGAAAATGTACAAGCTAGCTG 59.852 38.462 20.16 14.74 0.00 4.24
2579 3131 7.310072 TGTCGAAACTTCAGAAAATGTACAA 57.690 32.000 0.00 0.00 0.00 2.41
2586 3138 6.912203 TGTACATGTCGAAACTTCAGAAAA 57.088 33.333 0.00 0.00 0.00 2.29
2605 3157 6.636044 GCAGTTCGGTAGTTCAGTATATGTAC 59.364 42.308 0.00 0.00 0.00 2.90
2613 3165 2.364324 TGAAGCAGTTCGGTAGTTCAGT 59.636 45.455 0.00 0.00 35.17 3.41
2623 3175 8.081208 AGTATATTGATCAATGAAGCAGTTCG 57.919 34.615 27.59 0.00 35.17 3.95
2660 3212 1.379576 GCTGGCAAGGGCAAGATCT 60.380 57.895 0.00 0.00 44.40 2.75
2662 3214 1.681327 CAGCTGGCAAGGGCAAGAT 60.681 57.895 5.57 0.00 44.40 2.40
2663 3215 2.282674 CAGCTGGCAAGGGCAAGA 60.283 61.111 5.57 0.00 44.40 3.02
2664 3216 4.065281 GCAGCTGGCAAGGGCAAG 62.065 66.667 17.12 0.00 44.45 4.01
2685 3237 6.155827 TGCATGCCAACAAAATACTAAAGTC 58.844 36.000 16.68 0.00 0.00 3.01
2687 3239 6.812656 TCATGCATGCCAACAAAATACTAAAG 59.187 34.615 22.25 0.00 0.00 1.85
2690 3242 5.911378 TCATGCATGCCAACAAAATACTA 57.089 34.783 22.25 0.00 0.00 1.82
2695 3247 3.591023 CAGATCATGCATGCCAACAAAA 58.409 40.909 22.25 2.12 0.00 2.44
2727 3279 5.303333 TGTGTGTAACTGTCATCTTCTGGTA 59.697 40.000 0.00 0.00 38.04 3.25
2783 3335 2.229543 TGCACCAATGTCATCAGCTTTC 59.770 45.455 0.00 0.00 0.00 2.62
2788 3340 1.474879 TGCATGCACCAATGTCATCAG 59.525 47.619 18.46 0.00 0.00 2.90
3182 3739 3.494048 GCTGACTGAGAAGGGATGGTATG 60.494 52.174 0.00 0.00 0.00 2.39
3183 3740 2.703007 GCTGACTGAGAAGGGATGGTAT 59.297 50.000 0.00 0.00 0.00 2.73
3184 3741 2.111384 GCTGACTGAGAAGGGATGGTA 58.889 52.381 0.00 0.00 0.00 3.25
3185 3742 0.908198 GCTGACTGAGAAGGGATGGT 59.092 55.000 0.00 0.00 0.00 3.55
3186 3743 0.907486 TGCTGACTGAGAAGGGATGG 59.093 55.000 0.00 0.00 0.00 3.51
3257 3827 3.388024 GCCCATACTGTATCTCTCAACCA 59.612 47.826 0.00 0.00 0.00 3.67
3258 3828 3.388024 TGCCCATACTGTATCTCTCAACC 59.612 47.826 0.00 0.00 0.00 3.77
3263 3833 4.323333 GCATGATGCCCATACTGTATCTCT 60.323 45.833 6.04 0.00 37.42 3.10
3270 3840 2.235891 ACATGCATGATGCCCATACTG 58.764 47.619 32.75 3.42 44.23 2.74
3271 3841 2.670019 ACATGCATGATGCCCATACT 57.330 45.000 32.75 3.33 44.23 2.12
3273 3843 5.304871 ACAAATTACATGCATGATGCCCATA 59.695 36.000 32.75 10.14 44.23 2.74
3274 3844 4.101898 ACAAATTACATGCATGATGCCCAT 59.898 37.500 32.75 11.20 44.23 4.00
3275 3845 3.451540 ACAAATTACATGCATGATGCCCA 59.548 39.130 32.75 9.76 44.23 5.36
3276 3846 4.062677 ACAAATTACATGCATGATGCCC 57.937 40.909 32.75 0.00 44.23 5.36
3277 3847 5.352016 ACAAACAAATTACATGCATGATGCC 59.648 36.000 32.75 0.00 44.23 4.40
3279 3849 8.463456 TGTACAAACAAATTACATGCATGATG 57.537 30.769 32.75 21.74 33.43 3.07
3318 3892 8.668510 AAGGCACACTGATTAAGATACAATAG 57.331 34.615 0.00 0.00 0.00 1.73
3398 3972 1.868251 GATGACGTCACTCGCGGTC 60.868 63.158 22.71 8.95 44.19 4.79
3430 4004 1.135972 CCAACGAGTTTTGCCTGATCG 60.136 52.381 0.00 0.00 39.22 3.69
3431 4005 1.401539 GCCAACGAGTTTTGCCTGATC 60.402 52.381 0.00 0.00 0.00 2.92
3432 4006 0.598065 GCCAACGAGTTTTGCCTGAT 59.402 50.000 0.00 0.00 0.00 2.90
3434 4008 1.007387 GGCCAACGAGTTTTGCCTG 60.007 57.895 15.22 0.00 35.89 4.85
3446 4020 3.553095 AACCAGAGGAGCGGCCAAC 62.553 63.158 2.24 0.00 40.02 3.77
3447 4021 2.748058 GAAACCAGAGGAGCGGCCAA 62.748 60.000 2.24 0.00 40.02 4.52
3448 4022 3.249189 AAACCAGAGGAGCGGCCA 61.249 61.111 2.24 0.00 40.02 5.36
3449 4023 2.436824 GAAACCAGAGGAGCGGCC 60.437 66.667 0.00 0.00 0.00 6.13
3450 4024 2.436824 GGAAACCAGAGGAGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
3451 4025 1.219393 GAGGAAACCAGAGGAGCGG 59.781 63.158 0.00 0.00 0.00 5.52
3452 4026 0.108424 CAGAGGAAACCAGAGGAGCG 60.108 60.000 0.00 0.00 0.00 5.03
3453 4027 0.251634 CCAGAGGAAACCAGAGGAGC 59.748 60.000 0.00 0.00 0.00 4.70
3454 4028 0.908198 CCCAGAGGAAACCAGAGGAG 59.092 60.000 0.00 0.00 33.47 3.69
3455 4029 0.491823 TCCCAGAGGAAACCAGAGGA 59.508 55.000 0.00 0.00 40.08 3.71
3456 4030 3.088923 TCCCAGAGGAAACCAGAGG 57.911 57.895 0.00 0.00 40.08 3.69
3466 4040 5.193679 ACCGAAATTTTAAGATCCCAGAGG 58.806 41.667 0.00 0.00 0.00 3.69
3467 4041 5.880332 TGACCGAAATTTTAAGATCCCAGAG 59.120 40.000 0.00 0.00 0.00 3.35
3468 4042 5.811190 TGACCGAAATTTTAAGATCCCAGA 58.189 37.500 0.00 0.00 0.00 3.86
3469 4043 6.095440 ACATGACCGAAATTTTAAGATCCCAG 59.905 38.462 0.00 0.00 0.00 4.45
3470 4044 5.949354 ACATGACCGAAATTTTAAGATCCCA 59.051 36.000 0.00 0.00 0.00 4.37
3471 4045 6.451064 ACATGACCGAAATTTTAAGATCCC 57.549 37.500 0.00 0.00 0.00 3.85
3472 4046 9.285770 GTTAACATGACCGAAATTTTAAGATCC 57.714 33.333 0.00 0.00 0.00 3.36
3473 4047 9.834628 TGTTAACATGACCGAAATTTTAAGATC 57.165 29.630 3.59 0.00 0.00 2.75
3474 4048 9.840427 CTGTTAACATGACCGAAATTTTAAGAT 57.160 29.630 9.13 0.00 0.00 2.40
3475 4049 8.293867 CCTGTTAACATGACCGAAATTTTAAGA 58.706 33.333 9.13 0.00 0.00 2.10
3476 4050 7.061789 GCCTGTTAACATGACCGAAATTTTAAG 59.938 37.037 14.26 0.00 0.00 1.85
3477 4051 6.864165 GCCTGTTAACATGACCGAAATTTTAA 59.136 34.615 14.26 0.00 0.00 1.52
3478 4052 6.207810 AGCCTGTTAACATGACCGAAATTTTA 59.792 34.615 14.26 0.00 0.00 1.52
3479 4053 5.010617 AGCCTGTTAACATGACCGAAATTTT 59.989 36.000 14.26 0.00 0.00 1.82
3480 4054 4.522789 AGCCTGTTAACATGACCGAAATTT 59.477 37.500 14.26 0.00 0.00 1.82
3481 4055 4.079253 AGCCTGTTAACATGACCGAAATT 58.921 39.130 14.26 0.00 0.00 1.82
3482 4056 3.440173 CAGCCTGTTAACATGACCGAAAT 59.560 43.478 14.26 0.00 0.00 2.17
3483 4057 2.811431 CAGCCTGTTAACATGACCGAAA 59.189 45.455 14.26 0.00 0.00 3.46
3484 4058 2.037902 TCAGCCTGTTAACATGACCGAA 59.962 45.455 14.26 0.00 0.00 4.30
3485 4059 1.621317 TCAGCCTGTTAACATGACCGA 59.379 47.619 14.26 4.61 0.00 4.69
3486 4060 1.732259 GTCAGCCTGTTAACATGACCG 59.268 52.381 22.11 7.07 35.37 4.79
3487 4061 2.778299 TGTCAGCCTGTTAACATGACC 58.222 47.619 26.48 15.39 39.58 4.02
3488 4062 4.697352 AGAATGTCAGCCTGTTAACATGAC 59.303 41.667 24.37 24.37 40.49 3.06
3489 4063 4.910195 AGAATGTCAGCCTGTTAACATGA 58.090 39.130 14.26 10.19 32.88 3.07
3490 4064 4.940046 AGAGAATGTCAGCCTGTTAACATG 59.060 41.667 9.13 7.68 32.88 3.21
3491 4065 4.940046 CAGAGAATGTCAGCCTGTTAACAT 59.060 41.667 9.13 0.00 33.92 2.71
3492 4066 4.318332 CAGAGAATGTCAGCCTGTTAACA 58.682 43.478 8.28 8.28 0.00 2.41
3493 4067 3.686726 CCAGAGAATGTCAGCCTGTTAAC 59.313 47.826 0.00 0.00 0.00 2.01
3494 4068 3.307691 CCCAGAGAATGTCAGCCTGTTAA 60.308 47.826 0.00 0.00 0.00 2.01
3495 4069 2.237143 CCCAGAGAATGTCAGCCTGTTA 59.763 50.000 0.00 0.00 0.00 2.41
3496 4070 1.004044 CCCAGAGAATGTCAGCCTGTT 59.996 52.381 0.00 0.00 0.00 3.16
3497 4071 0.617413 CCCAGAGAATGTCAGCCTGT 59.383 55.000 0.00 0.00 0.00 4.00
3498 4072 0.747283 GCCCAGAGAATGTCAGCCTG 60.747 60.000 0.00 0.00 0.00 4.85
3499 4073 1.606531 GCCCAGAGAATGTCAGCCT 59.393 57.895 0.00 0.00 0.00 4.58
3500 4074 1.452833 GGCCCAGAGAATGTCAGCC 60.453 63.158 0.00 0.00 32.51 4.85
3511 4085 3.083349 CATCTCACCCGGCCCAGA 61.083 66.667 0.00 0.00 0.00 3.86
3517 4091 2.025767 CTCTGGAGCATCTCACCCGG 62.026 65.000 0.00 0.00 33.73 5.73
3518 4092 1.440893 CTCTGGAGCATCTCACCCG 59.559 63.158 0.00 0.00 33.73 5.28
3564 4144 9.691362 ATTTTAGTGCAATTTTCGTCAATAACT 57.309 25.926 0.00 0.00 0.00 2.24
3630 4210 2.767445 CCACGCATGGCATCTGTGG 61.767 63.158 24.99 24.99 43.55 4.17
3643 4223 1.738099 CAGAGCCACAGTACCACGC 60.738 63.158 0.00 0.00 0.00 5.34
3644 4224 1.079819 CCAGAGCCACAGTACCACG 60.080 63.158 0.00 0.00 0.00 4.94
3657 4237 1.227205 GCGGTGAGATGCTCCAGAG 60.227 63.158 0.00 0.00 0.00 3.35
3658 4238 1.953231 CTGCGGTGAGATGCTCCAGA 61.953 60.000 0.00 0.00 0.00 3.86
3659 4239 1.521010 CTGCGGTGAGATGCTCCAG 60.521 63.158 0.00 0.00 0.00 3.86
3660 4240 2.580815 CTGCGGTGAGATGCTCCA 59.419 61.111 0.00 0.00 0.00 3.86
3661 4241 2.894387 GCTGCGGTGAGATGCTCC 60.894 66.667 0.00 0.00 0.00 4.70
3662 4242 3.260483 CGCTGCGGTGAGATGCTC 61.260 66.667 15.40 0.00 0.00 4.26
3663 4243 3.300934 TTCGCTGCGGTGAGATGCT 62.301 57.895 23.03 0.00 33.24 3.79
3664 4244 2.815211 TTCGCTGCGGTGAGATGC 60.815 61.111 23.03 0.00 33.24 3.91
3665 4245 1.086067 ATGTTCGCTGCGGTGAGATG 61.086 55.000 23.03 0.00 33.24 2.90
3666 4246 0.391661 AATGTTCGCTGCGGTGAGAT 60.392 50.000 23.03 9.66 33.24 2.75
3667 4247 0.602638 AAATGTTCGCTGCGGTGAGA 60.603 50.000 23.03 7.69 33.24 3.27
3668 4248 0.453282 CAAATGTTCGCTGCGGTGAG 60.453 55.000 23.03 2.48 33.24 3.51
3669 4249 1.573932 CAAATGTTCGCTGCGGTGA 59.426 52.632 23.03 4.21 0.00 4.02
3670 4250 2.082366 GCAAATGTTCGCTGCGGTG 61.082 57.895 23.03 11.40 0.00 4.94
3671 4251 2.187599 GAGCAAATGTTCGCTGCGGT 62.188 55.000 23.03 3.28 41.05 5.68
3672 4252 1.512734 GAGCAAATGTTCGCTGCGG 60.513 57.895 23.03 4.97 41.05 5.69
3673 4253 1.512734 GGAGCAAATGTTCGCTGCG 60.513 57.895 17.25 17.25 41.05 5.18
3674 4254 1.512734 CGGAGCAAATGTTCGCTGC 60.513 57.895 0.00 0.00 42.55 5.25
3675 4255 1.075542 TACGGAGCAAATGTTCGCTG 58.924 50.000 0.00 0.00 38.99 5.18
3683 4263 1.533731 CACCAACGTTACGGAGCAAAT 59.466 47.619 10.20 0.00 0.00 2.32
3690 4270 1.503818 AAGCAGCACCAACGTTACGG 61.504 55.000 10.20 0.97 0.00 4.02
3691 4271 0.306533 AAAGCAGCACCAACGTTACG 59.693 50.000 0.00 2.19 0.00 3.18
3693 4273 2.017782 TCAAAAGCAGCACCAACGTTA 58.982 42.857 0.00 0.00 0.00 3.18
3695 4275 0.100503 GTCAAAAGCAGCACCAACGT 59.899 50.000 0.00 0.00 0.00 3.99
3696 4276 0.594796 GGTCAAAAGCAGCACCAACG 60.595 55.000 0.00 0.00 0.00 4.10
3697 4277 0.459489 TGGTCAAAAGCAGCACCAAC 59.541 50.000 0.00 0.00 35.93 3.77
3698 4278 1.189752 TTGGTCAAAAGCAGCACCAA 58.810 45.000 9.67 9.67 44.85 3.67
3699 4279 1.189752 TTTGGTCAAAAGCAGCACCA 58.810 45.000 0.00 0.00 37.13 4.17
3730 4323 3.929955 TTGCATCCACCATCACAGATA 57.070 42.857 0.00 0.00 0.00 1.98
3766 4359 6.912426 TGGTACAGAGTCATACCTCTTAGAT 58.088 40.000 19.16 0.00 39.81 1.98
3784 4377 0.618458 GCCACAAGGGATCTGGTACA 59.382 55.000 0.00 0.00 40.01 2.90
3785 4378 0.912486 AGCCACAAGGGATCTGGTAC 59.088 55.000 0.00 0.00 40.01 3.34
3786 4379 0.911769 CAGCCACAAGGGATCTGGTA 59.088 55.000 0.00 0.00 40.01 3.25
3787 4380 0.842030 TCAGCCACAAGGGATCTGGT 60.842 55.000 0.00 0.00 40.01 4.00
3788 4381 0.329261 TTCAGCCACAAGGGATCTGG 59.671 55.000 0.00 0.00 40.01 3.86
3789 4382 2.089980 CTTTCAGCCACAAGGGATCTG 58.910 52.381 0.00 0.00 40.01 2.90
3790 4383 1.615384 GCTTTCAGCCACAAGGGATCT 60.615 52.381 0.00 0.00 40.01 2.75
3791 4384 0.813821 GCTTTCAGCCACAAGGGATC 59.186 55.000 0.00 0.00 40.01 3.36
3792 4385 0.407139 AGCTTTCAGCCACAAGGGAT 59.593 50.000 0.00 0.00 43.77 3.85
3793 4386 0.185901 AAGCTTTCAGCCACAAGGGA 59.814 50.000 0.00 0.00 43.77 4.20
3794 4387 1.043022 AAAGCTTTCAGCCACAAGGG 58.957 50.000 5.69 0.00 43.77 3.95
3795 4388 1.269936 CCAAAGCTTTCAGCCACAAGG 60.270 52.381 9.23 0.03 43.77 3.61
3796 4389 1.870993 GCCAAAGCTTTCAGCCACAAG 60.871 52.381 9.23 0.00 43.77 3.16
3831 4424 2.181125 TGGCATCAAACCAATCATGCT 58.819 42.857 2.99 0.00 41.25 3.79
3832 4425 2.676632 TGGCATCAAACCAATCATGC 57.323 45.000 0.00 0.00 40.85 4.06
3833 4426 4.998672 ACTTTTGGCATCAAACCAATCATG 59.001 37.500 0.00 0.00 46.25 3.07
3834 4427 5.231702 ACTTTTGGCATCAAACCAATCAT 57.768 34.783 0.00 0.00 46.25 2.45
3835 4428 4.686191 ACTTTTGGCATCAAACCAATCA 57.314 36.364 0.00 0.00 46.25 2.57
3836 4429 4.213906 CCAACTTTTGGCATCAAACCAATC 59.786 41.667 0.00 0.00 46.25 2.67
3837 4430 4.136051 CCAACTTTTGGCATCAAACCAAT 58.864 39.130 0.00 0.00 46.25 3.16
3838 4431 3.539604 CCAACTTTTGGCATCAAACCAA 58.460 40.909 0.00 0.00 45.17 3.67
3839 4432 3.191078 CCAACTTTTGGCATCAAACCA 57.809 42.857 0.00 0.00 45.17 3.67
3871 4464 3.742433 CCAACATTTGGTAGTTGCCAA 57.258 42.857 0.00 0.00 45.93 4.52
3882 4475 4.789012 ACCAATCACTAGCCAACATTTG 57.211 40.909 0.00 0.00 0.00 2.32
3883 4476 4.021192 CCAACCAATCACTAGCCAACATTT 60.021 41.667 0.00 0.00 0.00 2.32
3884 4477 3.511146 CCAACCAATCACTAGCCAACATT 59.489 43.478 0.00 0.00 0.00 2.71
3885 4478 3.091545 CCAACCAATCACTAGCCAACAT 58.908 45.455 0.00 0.00 0.00 2.71
3886 4479 2.513753 CCAACCAATCACTAGCCAACA 58.486 47.619 0.00 0.00 0.00 3.33
3887 4480 1.202348 GCCAACCAATCACTAGCCAAC 59.798 52.381 0.00 0.00 0.00 3.77
3888 4481 1.075374 AGCCAACCAATCACTAGCCAA 59.925 47.619 0.00 0.00 0.00 4.52
3889 4482 0.698238 AGCCAACCAATCACTAGCCA 59.302 50.000 0.00 0.00 0.00 4.75
3890 4483 2.289565 GTAGCCAACCAATCACTAGCC 58.710 52.381 0.00 0.00 0.00 3.93
3901 4494 5.010617 TGAGAAGAAAAATTGGTAGCCAACC 59.989 40.000 2.39 0.00 46.95 3.77
3902 4495 6.084326 TGAGAAGAAAAATTGGTAGCCAAC 57.916 37.500 2.39 0.00 46.95 3.77
3904 4497 5.010617 GGTTGAGAAGAAAAATTGGTAGCCA 59.989 40.000 0.00 0.00 0.00 4.75
3905 4498 5.243954 AGGTTGAGAAGAAAAATTGGTAGCC 59.756 40.000 0.00 0.00 0.00 3.93
3906 4499 6.016276 TGAGGTTGAGAAGAAAAATTGGTAGC 60.016 38.462 0.00 0.00 0.00 3.58
3907 4500 7.013274 TGTGAGGTTGAGAAGAAAAATTGGTAG 59.987 37.037 0.00 0.00 0.00 3.18
3908 4501 6.831353 TGTGAGGTTGAGAAGAAAAATTGGTA 59.169 34.615 0.00 0.00 0.00 3.25
3909 4502 5.656416 TGTGAGGTTGAGAAGAAAAATTGGT 59.344 36.000 0.00 0.00 0.00 3.67
3910 4503 6.147864 TGTGAGGTTGAGAAGAAAAATTGG 57.852 37.500 0.00 0.00 0.00 3.16
3911 4504 8.477984 TTTTGTGAGGTTGAGAAGAAAAATTG 57.522 30.769 0.00 0.00 0.00 2.32
3912 4505 9.154847 CTTTTTGTGAGGTTGAGAAGAAAAATT 57.845 29.630 0.00 0.00 0.00 1.82
3913 4506 8.314021 ACTTTTTGTGAGGTTGAGAAGAAAAAT 58.686 29.630 0.00 0.00 0.00 1.82
3914 4507 7.666623 ACTTTTTGTGAGGTTGAGAAGAAAAA 58.333 30.769 0.00 0.00 0.00 1.94
3915 4508 7.227049 ACTTTTTGTGAGGTTGAGAAGAAAA 57.773 32.000 0.00 0.00 0.00 2.29
3916 4509 6.834168 ACTTTTTGTGAGGTTGAGAAGAAA 57.166 33.333 0.00 0.00 0.00 2.52
3917 4510 6.620678 CAACTTTTTGTGAGGTTGAGAAGAA 58.379 36.000 0.00 0.00 40.74 2.52
3918 4511 5.393027 GCAACTTTTTGTGAGGTTGAGAAGA 60.393 40.000 8.55 0.00 40.74 2.87
3919 4512 4.800471 GCAACTTTTTGTGAGGTTGAGAAG 59.200 41.667 8.55 0.00 40.74 2.85
3920 4513 4.381505 GGCAACTTTTTGTGAGGTTGAGAA 60.382 41.667 8.55 0.00 40.74 2.87
3921 4514 3.130340 GGCAACTTTTTGTGAGGTTGAGA 59.870 43.478 8.55 0.00 40.74 3.27
3922 4515 3.119173 TGGCAACTTTTTGTGAGGTTGAG 60.119 43.478 8.55 0.00 40.74 3.02
3923 4516 2.828520 TGGCAACTTTTTGTGAGGTTGA 59.171 40.909 8.55 0.00 40.74 3.18
3924 4517 3.244033 TGGCAACTTTTTGTGAGGTTG 57.756 42.857 0.00 0.00 41.07 3.77
3925 4518 3.971245 TTGGCAACTTTTTGTGAGGTT 57.029 38.095 0.00 0.00 34.90 3.50
3926 4519 5.806654 ATATTGGCAACTTTTTGTGAGGT 57.193 34.783 0.00 0.00 34.90 3.85
3927 4520 6.073112 CCAAATATTGGCAACTTTTTGTGAGG 60.073 38.462 20.57 10.66 45.17 3.86
3928 4521 6.890558 CCAAATATTGGCAACTTTTTGTGAG 58.109 36.000 20.57 9.36 45.17 3.51
3929 4522 6.857777 CCAAATATTGGCAACTTTTTGTGA 57.142 33.333 20.57 0.00 45.17 3.58
4007 4600 4.381398 CCGAACATAATTGGTTTGATGCCA 60.381 41.667 11.59 0.00 32.46 4.92
4008 4601 4.111916 CCGAACATAATTGGTTTGATGCC 58.888 43.478 11.59 0.00 32.46 4.40
4009 4602 4.992688 TCCGAACATAATTGGTTTGATGC 58.007 39.130 11.59 0.00 32.46 3.91
4010 4603 6.128035 TGACTCCGAACATAATTGGTTTGATG 60.128 38.462 11.59 0.00 32.46 3.07
4011 4604 5.943416 TGACTCCGAACATAATTGGTTTGAT 59.057 36.000 11.59 0.95 32.46 2.57
4012 4605 5.180492 GTGACTCCGAACATAATTGGTTTGA 59.820 40.000 11.59 6.03 32.46 2.69
4013 4606 5.181245 AGTGACTCCGAACATAATTGGTTTG 59.819 40.000 5.50 5.50 0.00 2.93
4014 4607 5.313712 AGTGACTCCGAACATAATTGGTTT 58.686 37.500 0.00 0.00 0.00 3.27
4015 4608 4.906618 AGTGACTCCGAACATAATTGGTT 58.093 39.130 0.00 0.00 0.00 3.67
4016 4609 4.553330 AGTGACTCCGAACATAATTGGT 57.447 40.909 0.00 0.00 0.00 3.67
4017 4610 5.880054 AAAGTGACTCCGAACATAATTGG 57.120 39.130 0.00 0.00 0.00 3.16
4018 4611 6.088085 GCAAAAAGTGACTCCGAACATAATTG 59.912 38.462 0.00 0.00 0.00 2.32
4019 4612 6.149633 GCAAAAAGTGACTCCGAACATAATT 58.850 36.000 0.00 0.00 0.00 1.40
4020 4613 5.335661 GGCAAAAAGTGACTCCGAACATAAT 60.336 40.000 0.00 0.00 29.52 1.28
4021 4614 4.023536 GGCAAAAAGTGACTCCGAACATAA 60.024 41.667 0.00 0.00 29.52 1.90
4022 4615 3.500680 GGCAAAAAGTGACTCCGAACATA 59.499 43.478 0.00 0.00 29.52 2.29
4023 4616 2.293399 GGCAAAAAGTGACTCCGAACAT 59.707 45.455 0.00 0.00 29.52 2.71
4024 4617 1.673920 GGCAAAAAGTGACTCCGAACA 59.326 47.619 0.00 0.00 29.52 3.18
4025 4618 1.333791 CGGCAAAAAGTGACTCCGAAC 60.334 52.381 3.85 0.00 39.23 3.95
4026 4619 0.941542 CGGCAAAAAGTGACTCCGAA 59.058 50.000 3.85 0.00 39.23 4.30
4027 4620 0.105224 TCGGCAAAAAGTGACTCCGA 59.895 50.000 8.10 8.10 42.86 4.55
4028 4621 0.512952 CTCGGCAAAAAGTGACTCCG 59.487 55.000 3.54 3.54 38.34 4.63
4029 4622 1.878953 TCTCGGCAAAAAGTGACTCC 58.121 50.000 0.00 0.00 30.19 3.85
4030 4623 4.246458 AGTATCTCGGCAAAAAGTGACTC 58.754 43.478 0.00 0.00 30.19 3.36
4031 4624 4.246458 GAGTATCTCGGCAAAAAGTGACT 58.754 43.478 0.00 0.00 30.19 3.41
4032 4625 3.994392 TGAGTATCTCGGCAAAAAGTGAC 59.006 43.478 0.00 0.00 34.92 3.67
4033 4626 4.245660 CTGAGTATCTCGGCAAAAAGTGA 58.754 43.478 0.00 0.00 34.92 3.41
4034 4627 3.372206 CCTGAGTATCTCGGCAAAAAGTG 59.628 47.826 0.54 0.00 35.69 3.16
4035 4628 3.600388 CCTGAGTATCTCGGCAAAAAGT 58.400 45.455 0.54 0.00 35.69 2.66
4036 4629 2.352960 GCCTGAGTATCTCGGCAAAAAG 59.647 50.000 19.28 2.22 43.80 2.27
4037 4630 2.356135 GCCTGAGTATCTCGGCAAAAA 58.644 47.619 19.28 0.00 43.80 1.94
4038 4631 2.024176 GCCTGAGTATCTCGGCAAAA 57.976 50.000 19.28 0.00 43.80 2.44
4039 4632 3.760693 GCCTGAGTATCTCGGCAAA 57.239 52.632 19.28 0.00 43.80 3.68
4042 4635 3.386768 TTAATGCCTGAGTATCTCGGC 57.613 47.619 18.19 18.19 44.23 5.54
4043 4636 3.736252 CGTTTAATGCCTGAGTATCTCGG 59.264 47.826 0.00 0.00 36.69 4.63
4044 4637 4.207224 CACGTTTAATGCCTGAGTATCTCG 59.793 45.833 0.00 0.00 34.92 4.04
4045 4638 5.109903 ACACGTTTAATGCCTGAGTATCTC 58.890 41.667 0.00 0.00 34.92 2.75
4046 4639 5.086104 ACACGTTTAATGCCTGAGTATCT 57.914 39.130 0.00 0.00 34.92 1.98
4047 4640 5.500290 CGAACACGTTTAATGCCTGAGTATC 60.500 44.000 0.00 0.00 0.00 2.24
4048 4641 4.328983 CGAACACGTTTAATGCCTGAGTAT 59.671 41.667 0.00 0.00 0.00 2.12
4049 4642 3.676172 CGAACACGTTTAATGCCTGAGTA 59.324 43.478 0.00 0.00 0.00 2.59
4050 4643 2.478894 CGAACACGTTTAATGCCTGAGT 59.521 45.455 0.00 0.00 0.00 3.41
4051 4644 2.159707 CCGAACACGTTTAATGCCTGAG 60.160 50.000 0.00 0.00 0.00 3.35
4052 4645 1.801771 CCGAACACGTTTAATGCCTGA 59.198 47.619 0.00 0.00 0.00 3.86
4053 4646 1.801771 TCCGAACACGTTTAATGCCTG 59.198 47.619 0.00 0.00 0.00 4.85
4054 4647 2.172851 TCCGAACACGTTTAATGCCT 57.827 45.000 0.00 0.00 0.00 4.75
4055 4648 2.477189 CCATCCGAACACGTTTAATGCC 60.477 50.000 0.00 0.00 0.00 4.40
4056 4649 2.417239 TCCATCCGAACACGTTTAATGC 59.583 45.455 0.00 0.00 0.00 3.56
4057 4650 3.930229 TCTCCATCCGAACACGTTTAATG 59.070 43.478 0.00 0.00 0.00 1.90
4058 4651 3.930848 GTCTCCATCCGAACACGTTTAAT 59.069 43.478 0.00 0.00 0.00 1.40
4059 4652 3.006110 AGTCTCCATCCGAACACGTTTAA 59.994 43.478 0.00 0.00 0.00 1.52
4060 4653 2.559668 AGTCTCCATCCGAACACGTTTA 59.440 45.455 0.00 0.00 0.00 2.01
4061 4654 1.343465 AGTCTCCATCCGAACACGTTT 59.657 47.619 0.00 0.00 0.00 3.60
4062 4655 0.966920 AGTCTCCATCCGAACACGTT 59.033 50.000 0.00 0.00 0.00 3.99
4063 4656 0.243907 CAGTCTCCATCCGAACACGT 59.756 55.000 0.00 0.00 0.00 4.49
4064 4657 0.526211 TCAGTCTCCATCCGAACACG 59.474 55.000 0.00 0.00 0.00 4.49
4065 4658 1.272490 TGTCAGTCTCCATCCGAACAC 59.728 52.381 0.00 0.00 0.00 3.32
4066 4659 1.627864 TGTCAGTCTCCATCCGAACA 58.372 50.000 0.00 0.00 0.00 3.18
4067 4660 2.544685 CATGTCAGTCTCCATCCGAAC 58.455 52.381 0.00 0.00 0.00 3.95
4068 4661 1.482182 CCATGTCAGTCTCCATCCGAA 59.518 52.381 0.00 0.00 0.00 4.30
4069 4662 1.114627 CCATGTCAGTCTCCATCCGA 58.885 55.000 0.00 0.00 0.00 4.55
4070 4663 1.114627 TCCATGTCAGTCTCCATCCG 58.885 55.000 0.00 0.00 0.00 4.18
4071 4664 2.288702 CGATCCATGTCAGTCTCCATCC 60.289 54.545 0.00 0.00 0.00 3.51
4072 4665 2.865670 GCGATCCATGTCAGTCTCCATC 60.866 54.545 0.00 0.00 0.00 3.51
4073 4666 1.069823 GCGATCCATGTCAGTCTCCAT 59.930 52.381 0.00 0.00 0.00 3.41
4074 4667 0.461548 GCGATCCATGTCAGTCTCCA 59.538 55.000 0.00 0.00 0.00 3.86
4075 4668 0.749649 AGCGATCCATGTCAGTCTCC 59.250 55.000 0.00 0.00 0.00 3.71
4076 4669 1.406898 TCAGCGATCCATGTCAGTCTC 59.593 52.381 0.00 0.00 0.00 3.36
4077 4670 1.135915 GTCAGCGATCCATGTCAGTCT 59.864 52.381 0.00 0.00 0.00 3.24
4078 4671 1.565305 GTCAGCGATCCATGTCAGTC 58.435 55.000 0.00 0.00 0.00 3.51
4079 4672 0.176680 GGTCAGCGATCCATGTCAGT 59.823 55.000 0.00 0.00 0.00 3.41
4080 4673 0.531532 GGGTCAGCGATCCATGTCAG 60.532 60.000 3.38 0.00 32.11 3.51
4081 4674 1.522092 GGGTCAGCGATCCATGTCA 59.478 57.895 3.38 0.00 32.11 3.58
4082 4675 1.592669 CGGGTCAGCGATCCATGTC 60.593 63.158 8.28 0.00 31.02 3.06
4083 4676 2.058001 TCGGGTCAGCGATCCATGT 61.058 57.895 8.28 0.00 31.02 3.21
4084 4677 1.592669 GTCGGGTCAGCGATCCATG 60.593 63.158 8.28 0.00 31.02 3.66
4085 4678 2.797278 GGTCGGGTCAGCGATCCAT 61.797 63.158 8.28 0.00 31.02 3.41
4086 4679 3.458163 GGTCGGGTCAGCGATCCA 61.458 66.667 8.28 0.00 31.02 3.41
4087 4680 4.222847 GGGTCGGGTCAGCGATCC 62.223 72.222 0.00 0.00 0.00 3.36
4088 4681 2.515996 TTTGGGTCGGGTCAGCGATC 62.516 60.000 0.00 0.00 0.00 3.69
4089 4682 2.119484 TTTTGGGTCGGGTCAGCGAT 62.119 55.000 0.00 0.00 0.00 4.58
4090 4683 2.326773 TTTTTGGGTCGGGTCAGCGA 62.327 55.000 0.00 0.00 0.00 4.93
4091 4684 1.241315 ATTTTTGGGTCGGGTCAGCG 61.241 55.000 0.00 0.00 0.00 5.18
4092 4685 0.966179 AATTTTTGGGTCGGGTCAGC 59.034 50.000 0.00 0.00 0.00 4.26
4093 4686 2.625790 TCAAATTTTTGGGTCGGGTCAG 59.374 45.455 3.38 0.00 38.66 3.51
4094 4687 2.625790 CTCAAATTTTTGGGTCGGGTCA 59.374 45.455 3.38 0.00 38.66 4.02
4095 4688 2.029380 CCTCAAATTTTTGGGTCGGGTC 60.029 50.000 2.46 0.00 36.93 4.46
4096 4689 1.967779 CCTCAAATTTTTGGGTCGGGT 59.032 47.619 2.46 0.00 36.93 5.28
4097 4690 1.337728 GCCTCAAATTTTTGGGTCGGG 60.338 52.381 2.46 0.84 36.93 5.14
4098 4691 1.337728 GGCCTCAAATTTTTGGGTCGG 60.338 52.381 0.00 1.29 36.93 4.79
4099 4692 1.342819 TGGCCTCAAATTTTTGGGTCG 59.657 47.619 3.32 0.00 36.93 4.79
4100 4693 3.483808 TTGGCCTCAAATTTTTGGGTC 57.516 42.857 3.32 5.49 36.93 4.46
4101 4694 3.498301 CCATTGGCCTCAAATTTTTGGGT 60.498 43.478 3.32 0.00 36.93 4.51
4102 4695 3.083293 CCATTGGCCTCAAATTTTTGGG 58.917 45.455 3.32 0.00 38.38 4.12
4103 4696 3.083293 CCCATTGGCCTCAAATTTTTGG 58.917 45.455 3.32 0.00 38.66 3.28
4104 4697 3.752747 GACCCATTGGCCTCAAATTTTTG 59.247 43.478 3.32 0.00 36.36 2.44
4105 4698 3.393941 TGACCCATTGGCCTCAAATTTTT 59.606 39.130 3.32 0.00 36.36 1.94
4106 4699 2.978278 TGACCCATTGGCCTCAAATTTT 59.022 40.909 3.32 0.00 36.36 1.82
4107 4700 2.618794 TGACCCATTGGCCTCAAATTT 58.381 42.857 3.32 0.00 36.36 1.82
4108 4701 2.323999 TGACCCATTGGCCTCAAATT 57.676 45.000 3.32 0.00 36.36 1.82
4109 4702 2.112998 CATGACCCATTGGCCTCAAAT 58.887 47.619 3.32 0.00 36.36 2.32
4110 4703 1.203162 ACATGACCCATTGGCCTCAAA 60.203 47.619 3.32 0.00 36.36 2.69
4111 4704 0.409092 ACATGACCCATTGGCCTCAA 59.591 50.000 3.32 0.00 37.28 3.02
4112 4705 0.323633 CACATGACCCATTGGCCTCA 60.324 55.000 3.32 0.00 33.59 3.86
4113 4706 1.039233 CCACATGACCCATTGGCCTC 61.039 60.000 3.32 0.00 33.59 4.70
4114 4707 1.000739 CCACATGACCCATTGGCCT 59.999 57.895 3.32 0.00 33.59 5.19
4115 4708 1.000233 TCCACATGACCCATTGGCC 60.000 57.895 0.00 0.00 33.59 5.36
4116 4709 0.034186 TCTCCACATGACCCATTGGC 60.034 55.000 0.00 0.00 33.59 4.52
4117 4710 2.020694 GCTCTCCACATGACCCATTGG 61.021 57.143 0.00 0.00 37.80 3.16
4118 4711 1.064906 AGCTCTCCACATGACCCATTG 60.065 52.381 0.00 0.00 0.00 2.82
4119 4712 1.211457 GAGCTCTCCACATGACCCATT 59.789 52.381 6.43 0.00 0.00 3.16
4120 4713 0.835941 GAGCTCTCCACATGACCCAT 59.164 55.000 6.43 0.00 0.00 4.00
4121 4714 0.252421 AGAGCTCTCCACATGACCCA 60.252 55.000 11.45 0.00 0.00 4.51
4122 4715 0.908198 AAGAGCTCTCCACATGACCC 59.092 55.000 18.55 0.00 0.00 4.46
4123 4716 3.494048 CCATAAGAGCTCTCCACATGACC 60.494 52.174 18.55 0.00 0.00 4.02
4124 4717 3.494048 CCCATAAGAGCTCTCCACATGAC 60.494 52.174 18.55 0.00 0.00 3.06
4125 4718 2.702478 CCCATAAGAGCTCTCCACATGA 59.298 50.000 18.55 0.00 0.00 3.07
4126 4719 2.702478 TCCCATAAGAGCTCTCCACATG 59.298 50.000 18.55 16.55 0.00 3.21
4127 4720 2.703007 GTCCCATAAGAGCTCTCCACAT 59.297 50.000 18.55 3.00 0.00 3.21
4128 4721 2.111384 GTCCCATAAGAGCTCTCCACA 58.889 52.381 18.55 3.13 0.00 4.17
4129 4722 1.067821 CGTCCCATAAGAGCTCTCCAC 59.932 57.143 18.55 6.65 0.00 4.02
4130 4723 1.403814 CGTCCCATAAGAGCTCTCCA 58.596 55.000 18.55 8.67 0.00 3.86
4131 4724 0.032815 GCGTCCCATAAGAGCTCTCC 59.967 60.000 18.55 0.00 0.00 3.71
4132 4725 0.032815 GGCGTCCCATAAGAGCTCTC 59.967 60.000 18.55 1.03 0.00 3.20
4133 4726 0.397816 AGGCGTCCCATAAGAGCTCT 60.398 55.000 11.45 11.45 0.00 4.09
4134 4727 0.249657 CAGGCGTCCCATAAGAGCTC 60.250 60.000 5.27 5.27 0.00 4.09
4135 4728 0.978146 ACAGGCGTCCCATAAGAGCT 60.978 55.000 0.00 0.00 0.00 4.09
4136 4729 0.811616 CACAGGCGTCCCATAAGAGC 60.812 60.000 0.00 0.00 0.00 4.09
4137 4730 0.537188 ACACAGGCGTCCCATAAGAG 59.463 55.000 0.00 0.00 0.00 2.85
4138 4731 0.249120 CACACAGGCGTCCCATAAGA 59.751 55.000 0.00 0.00 0.00 2.10
4139 4732 1.369091 GCACACAGGCGTCCCATAAG 61.369 60.000 0.00 0.00 0.00 1.73
4140 4733 1.376683 GCACACAGGCGTCCCATAA 60.377 57.895 0.00 0.00 0.00 1.90
4141 4734 2.267642 GCACACAGGCGTCCCATA 59.732 61.111 0.00 0.00 0.00 2.74
4149 4742 0.673644 ACTATTGGACGCACACAGGC 60.674 55.000 0.00 0.00 0.00 4.85
4150 4743 2.165641 TCTACTATTGGACGCACACAGG 59.834 50.000 0.00 0.00 0.00 4.00
4151 4744 3.179830 GTCTACTATTGGACGCACACAG 58.820 50.000 0.00 0.00 0.00 3.66
4152 4745 2.094390 GGTCTACTATTGGACGCACACA 60.094 50.000 0.00 0.00 33.70 3.72
4153 4746 2.165845 AGGTCTACTATTGGACGCACAC 59.834 50.000 0.00 0.00 33.70 3.82
4154 4747 2.453521 AGGTCTACTATTGGACGCACA 58.546 47.619 0.00 0.00 33.70 4.57
4155 4748 3.521947 AAGGTCTACTATTGGACGCAC 57.478 47.619 0.00 0.00 33.70 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.