Multiple sequence alignment - TraesCS5D01G159700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G159700 chr5D 100.000 5908 0 0 1 5908 249522414 249528321 0.000000e+00 10911
1 TraesCS5D01G159700 chr5B 92.952 5349 179 63 1 5266 282263727 282268960 0.000000e+00 7607
2 TraesCS5D01G159700 chr5B 85.952 420 48 11 3 416 403524838 403525252 7.030000e-119 438
3 TraesCS5D01G159700 chr5B 84.235 425 55 9 4 422 250138939 250138521 2.560000e-108 403
4 TraesCS5D01G159700 chr5B 80.645 217 18 8 5653 5854 282269134 282269341 4.770000e-31 147
5 TraesCS5D01G159700 chr5A 95.981 2762 81 13 2512 5261 332216881 332219624 0.000000e+00 4458
6 TraesCS5D01G159700 chr5A 93.743 895 33 12 889 1773 332214974 332215855 0.000000e+00 1321
7 TraesCS5D01G159700 chr5A 94.141 751 16 17 1784 2511 332215899 332216644 0.000000e+00 1118
8 TraesCS5D01G159700 chr5A 82.066 513 52 20 414 896 332214346 332214848 9.220000e-108 401
9 TraesCS5D01G159700 chr5A 77.089 371 26 20 5516 5854 332219690 332220033 6.130000e-35 159
10 TraesCS5D01G159700 chr6B 87.441 422 41 7 1 416 687539020 687538605 5.360000e-130 475
11 TraesCS5D01G159700 chr1B 86.525 423 48 8 1 417 340391945 340392364 1.940000e-124 457
12 TraesCS5D01G159700 chr2D 86.429 420 47 9 1 413 322539966 322540382 9.030000e-123 451
13 TraesCS5D01G159700 chr2D 79.447 253 45 7 1196 1444 35686256 35686007 7.870000e-39 172
14 TraesCS5D01G159700 chr2B 86.058 416 50 7 4 413 179147729 179147316 1.950000e-119 440
15 TraesCS5D01G159700 chr2B 85.238 420 52 10 1 413 669452194 669452610 1.970000e-114 424
16 TraesCS5D01G159700 chr2B 78.656 253 47 7 1196 1444 58846556 58846307 1.700000e-35 161
17 TraesCS5D01G159700 chr4D 82.745 510 71 14 4263 4760 116819741 116819237 7.030000e-119 438
18 TraesCS5D01G159700 chr4D 90.756 238 22 0 1206 1443 116823020 116822783 9.550000e-83 318
19 TraesCS5D01G159700 chr4D 76.623 616 100 29 3461 4063 116820903 116820319 3.460000e-77 300
20 TraesCS5D01G159700 chr4D 97.403 77 2 0 2264 2340 116821745 116821669 1.340000e-26 132
21 TraesCS5D01G159700 chr4D 90.722 97 9 0 1579 1675 116822669 116822573 4.800000e-26 130
22 TraesCS5D01G159700 chr4B 83.544 474 57 17 4306 4765 178851220 178850754 1.970000e-114 424
23 TraesCS5D01G159700 chr4B 90.336 238 23 0 1206 1443 178853877 178853640 4.450000e-81 313
24 TraesCS5D01G159700 chr4B 76.672 613 101 27 3461 4063 178851900 178851320 9.620000e-78 302
25 TraesCS5D01G159700 chr4B 80.889 225 35 8 1220 1440 418752298 418752518 2.830000e-38 171
26 TraesCS5D01G159700 chr4B 91.753 97 8 0 1579 1675 178853522 178853426 1.030000e-27 135
27 TraesCS5D01G159700 chr4B 97.403 77 2 0 2264 2340 178852777 178852701 1.340000e-26 132
28 TraesCS5D01G159700 chr4A 83.656 465 60 12 4305 4760 459630828 459631285 1.970000e-114 424
29 TraesCS5D01G159700 chr4A 85.337 416 53 8 7 416 583568178 583568591 1.970000e-114 424
30 TraesCS5D01G159700 chr4A 90.336 238 23 0 1203 1440 459627685 459627922 4.450000e-81 313
31 TraesCS5D01G159700 chr4A 91.753 97 8 0 1579 1675 459628043 459628139 1.030000e-27 135
32 TraesCS5D01G159700 chr4A 96.104 77 3 0 2264 2340 459628804 459628880 6.220000e-25 126
33 TraesCS5D01G159700 chr3A 79.379 354 30 21 366 709 463122681 463122361 6.000000e-50 209
34 TraesCS5D01G159700 chr2A 80.263 228 39 6 1220 1444 38915265 38915041 3.660000e-37 167
35 TraesCS5D01G159700 chr3D 85.455 165 14 5 369 530 434897104 434896947 4.740000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G159700 chr5D 249522414 249528321 5907 False 10911.0 10911 100.00000 1 5908 1 chr5D.!!$F1 5907
1 TraesCS5D01G159700 chr5B 282263727 282269341 5614 False 3877.0 7607 86.79850 1 5854 2 chr5B.!!$F2 5853
2 TraesCS5D01G159700 chr5A 332214346 332220033 5687 False 1491.4 4458 88.60400 414 5854 5 chr5A.!!$F1 5440
3 TraesCS5D01G159700 chr4D 116819237 116823020 3783 True 263.6 438 87.64980 1206 4760 5 chr4D.!!$R1 3554
4 TraesCS5D01G159700 chr4B 178850754 178853877 3123 True 261.2 424 87.94160 1206 4765 5 chr4B.!!$R1 3559
5 TraesCS5D01G159700 chr4A 459627685 459631285 3600 False 249.5 424 90.46225 1203 4760 4 chr4A.!!$F2 3557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 600 0.033228 TGGACCAAATGCGGCAAAAG 59.967 50.000 6.82 0.0 0.0 2.27 F
1513 1702 0.109781 GTGCCACATTTGGTGCTACG 60.110 55.000 0.00 0.0 46.5 3.51 F
1515 1704 0.958382 GCCACATTTGGTGCTACGGA 60.958 55.000 0.00 0.0 46.5 4.69 F
1516 1705 1.086696 CCACATTTGGTGCTACGGAG 58.913 55.000 0.00 0.0 46.5 4.63 F
1562 1751 1.293924 CGCCTGTCCATCTGATTCAC 58.706 55.000 0.00 0.0 0.0 3.18 F
4249 5561 1.266718 ACGTTTTGCACTGCTATGGTG 59.733 47.619 1.98 0.0 37.7 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2228 0.249120 CGGTGGAACAGACATGCCTA 59.751 55.000 0.00 0.00 41.80 3.93 R
3458 4595 1.063174 GTGATCTGCGCAAATCAGTCC 59.937 52.381 26.05 11.52 32.76 3.85 R
4090 5269 0.391528 TGCACTGTCATCGACCATGG 60.392 55.000 11.19 11.19 32.64 3.66 R
4223 5510 3.268013 AGCAGTGCAAAACGTATCAAC 57.732 42.857 19.20 0.00 0.00 3.18 R
4430 5991 6.251471 ACTTACTGCTTCTACTAGGTGGTAA 58.749 40.000 0.00 0.00 0.00 2.85 R
5496 7127 0.033228 GACATCCCTGCTCATCTCCG 59.967 60.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.243342 CGTCTTCCATGGCCTTGCAA 61.243 55.000 13.15 3.85 0.00 4.08
23 24 1.217244 CTTCCATGGCCTTGCAAGC 59.783 57.895 21.43 15.56 0.00 4.01
34 35 2.204237 CCTTGCAAGCAACTTTGGAAC 58.796 47.619 21.43 0.00 34.14 3.62
45 46 2.783135 ACTTTGGAACGCATGATGAGT 58.217 42.857 0.00 0.00 29.66 3.41
61 62 3.492102 TGAGTCCAAAAGGAAGTGAGG 57.508 47.619 0.00 0.00 0.00 3.86
79 80 1.203364 AGGGAGGAGAGAAGGAGCAAA 60.203 52.381 0.00 0.00 0.00 3.68
88 89 1.632920 AGAAGGAGCAAAGGGAAGGAG 59.367 52.381 0.00 0.00 0.00 3.69
93 94 1.746991 GCAAAGGGAAGGAGGAGCG 60.747 63.158 0.00 0.00 0.00 5.03
147 148 1.001631 TTGAGATGGAGGAGGCCGA 59.998 57.895 0.00 0.00 0.00 5.54
173 174 2.641815 AGGAAGCTTGACATTGAGGAGT 59.358 45.455 2.10 0.00 0.00 3.85
181 182 0.976641 ACATTGAGGAGTCCGCTCAA 59.023 50.000 14.48 14.43 43.37 3.02
198 199 3.675775 GCTCAACTGAAGAAGCTCGAGAT 60.676 47.826 18.75 7.13 0.00 2.75
200 201 2.842208 ACTGAAGAAGCTCGAGATCG 57.158 50.000 18.75 3.47 41.45 3.69
277 278 2.611751 CGACAAGAACAACATGTCACCA 59.388 45.455 0.00 0.00 44.33 4.17
300 301 0.321653 AGGAAGCTTGGTTCGCGAAT 60.322 50.000 26.23 6.71 0.00 3.34
301 302 0.097150 GGAAGCTTGGTTCGCGAATC 59.903 55.000 26.23 25.56 0.00 2.52
302 303 0.247301 GAAGCTTGGTTCGCGAATCG 60.247 55.000 26.23 13.64 40.15 3.34
303 304 0.949105 AAGCTTGGTTCGCGAATCGT 60.949 50.000 26.23 7.54 39.67 3.73
304 305 1.058903 GCTTGGTTCGCGAATCGTC 59.941 57.895 26.23 13.12 39.67 4.20
305 306 1.623081 GCTTGGTTCGCGAATCGTCA 61.623 55.000 26.23 17.20 39.67 4.35
306 307 0.366871 CTTGGTTCGCGAATCGTCAG 59.633 55.000 26.23 16.99 39.67 3.51
307 308 0.038983 TTGGTTCGCGAATCGTCAGA 60.039 50.000 26.23 4.72 39.67 3.27
308 309 0.456142 TGGTTCGCGAATCGTCAGAG 60.456 55.000 26.23 0.00 39.67 3.35
309 310 1.140407 GGTTCGCGAATCGTCAGAGG 61.140 60.000 26.23 0.00 39.67 3.69
310 311 0.179171 GTTCGCGAATCGTCAGAGGA 60.179 55.000 26.23 0.00 39.67 3.71
312 313 0.743345 TCGCGAATCGTCAGAGGAGA 60.743 55.000 6.20 0.00 39.67 3.71
313 314 0.309302 CGCGAATCGTCAGAGGAGAT 59.691 55.000 0.00 0.00 0.00 2.75
314 315 1.764851 GCGAATCGTCAGAGGAGATG 58.235 55.000 4.07 0.00 0.00 2.90
315 316 1.066303 GCGAATCGTCAGAGGAGATGT 59.934 52.381 4.07 0.00 0.00 3.06
316 317 2.480416 GCGAATCGTCAGAGGAGATGTT 60.480 50.000 4.07 0.00 0.00 2.71
317 318 3.775202 CGAATCGTCAGAGGAGATGTTT 58.225 45.455 0.00 0.00 0.00 2.83
318 319 3.549471 CGAATCGTCAGAGGAGATGTTTG 59.451 47.826 0.00 0.00 0.00 2.93
319 320 2.370281 TCGTCAGAGGAGATGTTTGC 57.630 50.000 0.00 0.00 0.00 3.68
320 321 1.066858 TCGTCAGAGGAGATGTTTGCC 60.067 52.381 0.00 0.00 0.00 4.52
321 322 1.338105 CGTCAGAGGAGATGTTTGCCA 60.338 52.381 0.00 0.00 0.00 4.92
374 375 3.942748 GTGGACTATGGCCGTTCATTTTA 59.057 43.478 0.77 0.00 0.00 1.52
382 383 3.569250 GCCGTTCATTTTAAAGGCTGA 57.431 42.857 6.64 1.12 46.57 4.26
411 412 3.037833 GCCGCTGGCTTTTGTTGC 61.038 61.111 11.61 0.00 46.69 4.17
480 481 3.667087 GGCATGAACTGGCGTGAA 58.333 55.556 0.00 0.00 41.02 3.18
481 482 1.210155 GGCATGAACTGGCGTGAAC 59.790 57.895 0.00 0.00 41.02 3.18
482 483 1.210155 GCATGAACTGGCGTGAACC 59.790 57.895 0.00 0.00 0.00 3.62
483 484 1.514678 GCATGAACTGGCGTGAACCA 61.515 55.000 0.00 0.00 38.29 3.67
484 485 0.238289 CATGAACTGGCGTGAACCAC 59.762 55.000 0.00 0.00 35.33 4.16
509 510 2.811431 CAACGTTGGCTTGAACTATGGA 59.189 45.455 20.71 0.00 0.00 3.41
532 553 3.059325 CGCTGCCATTTAGCTACATCTTC 60.059 47.826 0.00 0.00 39.00 2.87
567 588 1.387295 TTTGCATGCACGTGGACCAA 61.387 50.000 22.58 17.84 0.00 3.67
575 596 3.361158 CGTGGACCAAATGCGGCA 61.361 61.111 4.58 4.58 0.00 5.69
579 600 0.033228 TGGACCAAATGCGGCAAAAG 59.967 50.000 6.82 0.00 0.00 2.27
590 611 4.097828 GCAAAAGATGCGGCCATG 57.902 55.556 2.24 0.00 46.87 3.66
591 612 1.216178 GCAAAAGATGCGGCCATGT 59.784 52.632 2.24 0.00 46.87 3.21
624 645 0.527113 CCGCAGCATTCACAAATCCA 59.473 50.000 0.00 0.00 0.00 3.41
631 652 2.086869 CATTCACAAATCCAGACGGCT 58.913 47.619 0.00 0.00 0.00 5.52
633 654 0.396435 TCACAAATCCAGACGGCTGT 59.604 50.000 18.99 0.00 40.63 4.40
687 709 1.263217 GACAAAACGAATGTCTGCGGT 59.737 47.619 11.02 0.00 43.03 5.68
826 865 0.255890 ATGGTATGGACGGCAAGCTT 59.744 50.000 0.00 0.00 0.00 3.74
932 1115 1.596934 CAGGAGCTTTGCCCGTAGA 59.403 57.895 0.00 0.00 0.00 2.59
1010 1194 1.472878 CCTCCATTGAGACGAGACGAA 59.527 52.381 0.00 0.00 41.42 3.85
1082 1266 2.015726 TCTCTCTCCTCCCCTCCCC 61.016 68.421 0.00 0.00 0.00 4.81
1131 1320 2.048222 ACACGCACAGATCCACCG 60.048 61.111 0.00 0.00 0.00 4.94
1132 1321 2.048222 CACGCACAGATCCACCGT 60.048 61.111 0.00 0.00 0.00 4.83
1134 1323 2.509336 CGCACAGATCCACCGTCC 60.509 66.667 0.00 0.00 0.00 4.79
1136 1325 2.970639 CACAGATCCACCGTCCGT 59.029 61.111 0.00 0.00 0.00 4.69
1473 1662 4.388499 TTTCTCGCTCCCGGCCAC 62.388 66.667 2.24 0.00 37.74 5.01
1484 1673 4.530857 CGGCCACCCCAGATCGAC 62.531 72.222 2.24 0.00 0.00 4.20
1513 1702 0.109781 GTGCCACATTTGGTGCTACG 60.110 55.000 0.00 0.00 46.50 3.51
1515 1704 0.958382 GCCACATTTGGTGCTACGGA 60.958 55.000 0.00 0.00 46.50 4.69
1516 1705 1.086696 CCACATTTGGTGCTACGGAG 58.913 55.000 0.00 0.00 46.50 4.63
1517 1706 1.610624 CCACATTTGGTGCTACGGAGT 60.611 52.381 0.00 0.00 46.50 3.85
1518 1707 2.354303 CCACATTTGGTGCTACGGAGTA 60.354 50.000 0.00 0.00 46.50 2.59
1520 1709 2.565834 ACATTTGGTGCTACGGAGTACT 59.434 45.455 15.92 0.00 45.11 2.73
1521 1710 3.765511 ACATTTGGTGCTACGGAGTACTA 59.234 43.478 15.92 6.86 45.11 1.82
1559 1748 2.700371 TCATACGCCTGTCCATCTGATT 59.300 45.455 0.00 0.00 0.00 2.57
1562 1751 1.293924 CGCCTGTCCATCTGATTCAC 58.706 55.000 0.00 0.00 0.00 3.18
1727 1945 4.143406 ACCAGGAGGGAAGTACTACTTT 57.857 45.455 0.00 0.00 37.11 2.66
1773 2070 3.545078 CCGTCGCAAATGTGTAGTAGTAC 59.455 47.826 0.37 0.37 0.00 2.73
1774 2071 4.160594 CGTCGCAAATGTGTAGTAGTACA 58.839 43.478 6.31 6.31 36.78 2.90
1775 2072 4.618067 CGTCGCAAATGTGTAGTAGTACAA 59.382 41.667 12.01 3.95 40.94 2.41
1776 2073 5.117440 CGTCGCAAATGTGTAGTAGTACAAA 59.883 40.000 12.01 7.53 40.94 2.83
1777 2074 6.294363 GTCGCAAATGTGTAGTAGTACAAAC 58.706 40.000 12.01 2.04 40.94 2.93
1778 2075 6.145048 GTCGCAAATGTGTAGTAGTACAAACT 59.855 38.462 12.01 6.21 40.94 2.66
1779 2076 6.702723 TCGCAAATGTGTAGTAGTACAAACTT 59.297 34.615 12.01 0.23 40.94 2.66
1780 2077 7.225145 TCGCAAATGTGTAGTAGTACAAACTTT 59.775 33.333 12.01 9.10 40.94 2.66
1781 2078 7.853929 CGCAAATGTGTAGTAGTACAAACTTTT 59.146 33.333 12.01 8.59 40.94 2.27
1782 2079 8.953990 GCAAATGTGTAGTAGTACAAACTTTTG 58.046 33.333 21.13 21.13 40.94 2.44
1842 2140 2.739292 GCGCCTGAATATGTTACTCGA 58.261 47.619 0.00 0.00 0.00 4.04
2006 2306 7.294584 TCTCTTGGAAAAACCCATCTTTCTTA 58.705 34.615 0.00 0.00 35.87 2.10
2009 2309 8.201464 TCTTGGAAAAACCCATCTTTCTTAAAC 58.799 33.333 0.00 0.00 35.87 2.01
2011 2320 7.269316 TGGAAAAACCCATCTTTCTTAAACAC 58.731 34.615 0.00 0.00 38.00 3.32
2123 2432 2.093447 ACACCAATGCTGGAGTACTAGC 60.093 50.000 10.22 10.22 46.92 3.42
2347 2969 2.450476 CACCCGGTTAGTACCACTAGT 58.550 52.381 0.00 0.00 45.31 2.57
2355 2977 5.504853 GGTTAGTACCACTAGTCCACTACT 58.495 45.833 0.00 0.00 44.36 2.57
2358 2980 5.109500 AGTACCACTAGTCCACTACTACC 57.891 47.826 0.00 0.00 39.80 3.18
2359 2981 4.537688 AGTACCACTAGTCCACTACTACCA 59.462 45.833 0.00 0.00 39.80 3.25
2360 2982 4.604784 ACCACTAGTCCACTACTACCAT 57.395 45.455 0.00 0.00 39.80 3.55
2361 2983 5.722172 ACCACTAGTCCACTACTACCATA 57.278 43.478 0.00 0.00 39.80 2.74
2376 2998 6.885952 ACTACCATATACTGCACTCTACTG 57.114 41.667 0.00 0.00 0.00 2.74
2497 3165 5.296780 TCGATGGGCAGATATTTTTCTTGAC 59.703 40.000 0.00 0.00 0.00 3.18
2507 3175 7.123247 CAGATATTTTTCTTGACAACCCTCCAT 59.877 37.037 0.00 0.00 0.00 3.41
2540 3625 9.630098 TTTTATACTGACACTCGGTAGTAAAAG 57.370 33.333 0.00 0.00 41.11 2.27
2541 3626 6.830873 ATACTGACACTCGGTAGTAAAAGT 57.169 37.500 0.00 0.00 41.11 2.66
2543 3628 5.910614 ACTGACACTCGGTAGTAAAAGTTT 58.089 37.500 0.00 0.00 33.46 2.66
3036 4162 4.095932 GCATCTTCATCTTGCTTGTCATCA 59.904 41.667 0.00 0.00 33.61 3.07
3037 4163 5.730847 GCATCTTCATCTTGCTTGTCATCAG 60.731 44.000 0.00 0.00 33.61 2.90
3039 4165 5.554070 TCTTCATCTTGCTTGTCATCAGAA 58.446 37.500 0.00 0.00 0.00 3.02
3040 4166 5.410746 TCTTCATCTTGCTTGTCATCAGAAC 59.589 40.000 0.00 0.00 0.00 3.01
3041 4167 4.644498 TCATCTTGCTTGTCATCAGAACA 58.356 39.130 0.00 0.00 0.00 3.18
3042 4168 5.065235 TCATCTTGCTTGTCATCAGAACAA 58.935 37.500 0.00 0.00 0.00 2.83
3043 4169 5.532032 TCATCTTGCTTGTCATCAGAACAAA 59.468 36.000 0.00 0.00 0.00 2.83
3044 4170 5.833406 TCTTGCTTGTCATCAGAACAAAA 57.167 34.783 0.00 0.00 0.00 2.44
3045 4171 5.824429 TCTTGCTTGTCATCAGAACAAAAG 58.176 37.500 0.00 0.00 0.00 2.27
3047 4173 3.380954 TGCTTGTCATCAGAACAAAAGCA 59.619 39.130 5.72 5.72 0.00 3.91
3049 4175 4.384846 GCTTGTCATCAGAACAAAAGCATG 59.615 41.667 0.00 0.00 0.00 4.06
3050 4176 5.518848 TTGTCATCAGAACAAAAGCATGT 57.481 34.783 0.00 0.00 34.24 3.21
3051 4177 6.631971 TTGTCATCAGAACAAAAGCATGTA 57.368 33.333 0.00 0.00 32.02 2.29
3052 4178 6.822667 TGTCATCAGAACAAAAGCATGTAT 57.177 33.333 0.00 0.00 32.02 2.29
3054 4180 5.961843 GTCATCAGAACAAAAGCATGTATCG 59.038 40.000 0.00 0.00 32.02 2.92
3058 4184 6.370593 TCAGAACAAAAGCATGTATCGTTTC 58.629 36.000 0.00 0.00 32.02 2.78
3059 4185 6.017523 TCAGAACAAAAGCATGTATCGTTTCA 60.018 34.615 0.00 0.00 32.02 2.69
3060 4186 6.636447 CAGAACAAAAGCATGTATCGTTTCAA 59.364 34.615 0.00 0.00 32.02 2.69
3061 4187 7.167302 CAGAACAAAAGCATGTATCGTTTCAAA 59.833 33.333 0.00 0.00 32.02 2.69
3062 4188 7.704472 AGAACAAAAGCATGTATCGTTTCAAAA 59.296 29.630 0.00 0.00 32.02 2.44
3063 4189 7.763172 ACAAAAGCATGTATCGTTTCAAAAA 57.237 28.000 0.00 0.00 0.00 1.94
3117 4243 7.987458 TGTTTGTGGCAACCAAAATTCTAATTA 59.013 29.630 5.01 0.00 38.10 1.40
3452 4589 5.069781 CCATCTGCTTAGTTACTCCTAGCTT 59.930 44.000 12.77 0.00 0.00 3.74
3458 4595 6.183360 TGCTTAGTTACTCCTAGCTTATGTGG 60.183 42.308 12.77 0.00 0.00 4.17
3907 5053 7.548196 CAACTCTTAACTGTTTAGTTGGTCA 57.452 36.000 22.34 1.38 46.28 4.02
3954 5101 5.753921 ACTGAACAACTAACTCAAGTAGCAC 59.246 40.000 0.00 0.00 0.00 4.40
4249 5561 1.266718 ACGTTTTGCACTGCTATGGTG 59.733 47.619 1.98 0.00 37.70 4.17
4430 5991 2.785857 CCTCTTCCCCCAAATACCTCAT 59.214 50.000 0.00 0.00 0.00 2.90
4626 6199 4.431131 CAGGCCCGCTCCCAATGT 62.431 66.667 0.00 0.00 0.00 2.71
4763 6336 3.519579 CGACAAGCAGAAGTGATGAGAT 58.480 45.455 0.00 0.00 0.00 2.75
4864 6437 0.407139 AGGGTGCTTCCAGCTGAAAT 59.593 50.000 17.39 0.00 42.97 2.17
4923 6496 4.036027 GCGTTGATTGGTTCATCATGAGAT 59.964 41.667 0.09 0.00 33.34 2.75
4966 6539 1.811558 GCTAGCATTCTCCCATTGCGA 60.812 52.381 10.63 0.00 41.22 5.10
5195 6768 8.475331 GTTTTGAGAAACAGAGGTTATATCGA 57.525 34.615 0.00 0.00 43.65 3.59
5196 6769 9.099454 GTTTTGAGAAACAGAGGTTATATCGAT 57.901 33.333 2.16 2.16 43.65 3.59
5197 6770 9.667107 TTTTGAGAAACAGAGGTTATATCGATT 57.333 29.630 1.71 0.00 35.82 3.34
5198 6771 8.873215 TTGAGAAACAGAGGTTATATCGATTC 57.127 34.615 1.71 0.00 35.82 2.52
5217 6790 2.198406 TCGACAACACAGTTGCAGTAC 58.802 47.619 9.60 0.00 0.00 2.73
5256 6830 3.951663 ACAAGGTGATAAGGCCAAGTAC 58.048 45.455 5.01 0.00 0.00 2.73
5261 6835 4.018415 AGGTGATAAGGCCAAGTACAATGT 60.018 41.667 5.01 0.00 0.00 2.71
5266 6840 8.129211 GTGATAAGGCCAAGTACAATGTAATTC 58.871 37.037 5.01 0.00 31.22 2.17
5269 6895 3.488553 GGCCAAGTACAATGTAATTCGGC 60.489 47.826 24.63 24.63 31.22 5.54
5340 6966 5.423931 AGTTTCAGCTTTTCTTTTGGGGTTA 59.576 36.000 0.00 0.00 0.00 2.85
5400 7031 0.815213 GGCCGAAGTGCATCATGCTA 60.815 55.000 11.84 0.00 45.31 3.49
5401 7032 0.305922 GCCGAAGTGCATCATGCTAC 59.694 55.000 11.84 7.60 45.31 3.58
5403 7034 1.328680 CCGAAGTGCATCATGCTACAC 59.671 52.381 11.84 0.24 45.31 2.90
5404 7035 2.001872 CGAAGTGCATCATGCTACACA 58.998 47.619 11.84 0.00 45.31 3.72
5424 7055 9.935682 CTACACATGTGGCACTTATTATTTAAG 57.064 33.333 28.64 0.00 34.19 1.85
5425 7056 8.574251 ACACATGTGGCACTTATTATTTAAGA 57.426 30.769 28.64 0.00 34.19 2.10
5426 7057 9.019656 ACACATGTGGCACTTATTATTTAAGAA 57.980 29.630 28.64 0.00 34.19 2.52
5481 7112 9.547753 TTACTATAGCAAAGAAATAAGCTCAGG 57.452 33.333 0.00 0.00 38.47 3.86
5482 7113 7.796054 ACTATAGCAAAGAAATAAGCTCAGGA 58.204 34.615 0.00 0.00 38.47 3.86
5483 7114 8.435982 ACTATAGCAAAGAAATAAGCTCAGGAT 58.564 33.333 0.00 0.00 38.47 3.24
5484 7115 9.935241 CTATAGCAAAGAAATAAGCTCAGGATA 57.065 33.333 0.00 0.00 38.47 2.59
5485 7116 6.934048 AGCAAAGAAATAAGCTCAGGATAC 57.066 37.500 0.00 0.00 30.05 2.24
5486 7117 7.796054 TAGCAAAGAAATAAGCTCAGGATACT 58.204 34.615 0.00 0.00 43.15 2.12
5487 7118 8.924303 TAGCAAAGAAATAAGCTCAGGATACTA 58.076 33.333 0.00 0.00 41.40 1.82
5499 7130 2.599408 GGATACTACCAGGATCCGGA 57.401 55.000 23.89 6.61 30.33 5.14
5500 7131 2.448453 GGATACTACCAGGATCCGGAG 58.552 57.143 23.89 18.46 30.33 4.63
5501 7132 2.041350 GGATACTACCAGGATCCGGAGA 59.959 54.545 23.89 12.96 30.33 3.71
5502 7133 3.309265 GGATACTACCAGGATCCGGAGAT 60.309 52.174 23.89 13.11 34.57 2.75
5503 7134 2.002505 ACTACCAGGATCCGGAGATG 57.997 55.000 23.89 8.35 30.90 2.90
5504 7135 1.499438 ACTACCAGGATCCGGAGATGA 59.501 52.381 23.89 7.36 30.90 2.92
5505 7136 2.166829 CTACCAGGATCCGGAGATGAG 58.833 57.143 23.89 0.66 30.90 2.90
5506 7137 1.118356 ACCAGGATCCGGAGATGAGC 61.118 60.000 23.89 0.00 30.90 4.26
5507 7138 1.117749 CCAGGATCCGGAGATGAGCA 61.118 60.000 14.13 0.00 30.90 4.26
5508 7139 0.317799 CAGGATCCGGAGATGAGCAG 59.682 60.000 11.34 0.00 30.90 4.24
5509 7140 0.831288 AGGATCCGGAGATGAGCAGG 60.831 60.000 11.34 0.00 30.90 4.85
5510 7141 1.670590 GATCCGGAGATGAGCAGGG 59.329 63.158 11.34 0.00 30.90 4.45
5511 7142 0.829602 GATCCGGAGATGAGCAGGGA 60.830 60.000 11.34 0.00 30.90 4.20
5512 7143 0.178909 ATCCGGAGATGAGCAGGGAT 60.179 55.000 11.34 0.00 0.00 3.85
5513 7144 1.117749 TCCGGAGATGAGCAGGGATG 61.118 60.000 0.00 0.00 0.00 3.51
5514 7145 1.406065 CCGGAGATGAGCAGGGATGT 61.406 60.000 0.00 0.00 0.00 3.06
5515 7146 0.033228 CGGAGATGAGCAGGGATGTC 59.967 60.000 0.00 0.00 0.00 3.06
5516 7147 1.126488 GGAGATGAGCAGGGATGTCA 58.874 55.000 0.00 0.00 0.00 3.58
5517 7148 1.487976 GGAGATGAGCAGGGATGTCAA 59.512 52.381 0.00 0.00 0.00 3.18
5518 7149 2.559440 GAGATGAGCAGGGATGTCAAC 58.441 52.381 0.00 0.00 0.00 3.18
5519 7150 2.170187 GAGATGAGCAGGGATGTCAACT 59.830 50.000 0.00 0.00 0.00 3.16
5520 7151 2.575279 AGATGAGCAGGGATGTCAACTT 59.425 45.455 0.00 0.00 0.00 2.66
5521 7152 2.957402 TGAGCAGGGATGTCAACTTT 57.043 45.000 0.00 0.00 0.00 2.66
5522 7153 3.228188 TGAGCAGGGATGTCAACTTTT 57.772 42.857 0.00 0.00 0.00 2.27
5523 7154 4.365514 TGAGCAGGGATGTCAACTTTTA 57.634 40.909 0.00 0.00 0.00 1.52
5524 7155 4.326826 TGAGCAGGGATGTCAACTTTTAG 58.673 43.478 0.00 0.00 0.00 1.85
5525 7156 4.202461 TGAGCAGGGATGTCAACTTTTAGT 60.202 41.667 0.00 0.00 0.00 2.24
5526 7157 4.729868 AGCAGGGATGTCAACTTTTAGTT 58.270 39.130 0.00 0.00 39.39 2.24
5542 7173 9.816354 AACTTTTAGTTGTAAGCATGACAATTT 57.184 25.926 0.00 0.00 42.52 1.82
5543 7174 9.816354 ACTTTTAGTTGTAAGCATGACAATTTT 57.184 25.926 0.00 0.00 42.52 1.82
5566 7197 3.648339 TTTCAGATGGCAAGTTTCAGC 57.352 42.857 0.00 0.00 0.00 4.26
5567 7198 2.574006 TCAGATGGCAAGTTTCAGCT 57.426 45.000 0.00 0.00 0.00 4.24
5568 7199 2.867624 TCAGATGGCAAGTTTCAGCTT 58.132 42.857 0.00 0.00 0.00 3.74
5569 7200 3.225104 TCAGATGGCAAGTTTCAGCTTT 58.775 40.909 0.00 0.00 0.00 3.51
5570 7201 3.638160 TCAGATGGCAAGTTTCAGCTTTT 59.362 39.130 0.00 0.00 0.00 2.27
5571 7202 3.985925 CAGATGGCAAGTTTCAGCTTTTC 59.014 43.478 0.00 0.00 0.00 2.29
5572 7203 3.893813 AGATGGCAAGTTTCAGCTTTTCT 59.106 39.130 0.00 0.00 0.00 2.52
5573 7204 4.343239 AGATGGCAAGTTTCAGCTTTTCTT 59.657 37.500 0.00 0.00 0.00 2.52
5574 7205 4.470334 TGGCAAGTTTCAGCTTTTCTTT 57.530 36.364 0.00 0.00 0.00 2.52
5575 7206 4.831107 TGGCAAGTTTCAGCTTTTCTTTT 58.169 34.783 0.00 0.00 0.00 2.27
5576 7207 4.630940 TGGCAAGTTTCAGCTTTTCTTTTG 59.369 37.500 0.00 0.00 0.00 2.44
5577 7208 4.034394 GGCAAGTTTCAGCTTTTCTTTTGG 59.966 41.667 0.00 0.00 0.00 3.28
5578 7209 4.631377 GCAAGTTTCAGCTTTTCTTTTGGT 59.369 37.500 0.00 0.00 0.00 3.67
5579 7210 5.122239 GCAAGTTTCAGCTTTTCTTTTGGTT 59.878 36.000 0.00 0.00 0.00 3.67
5580 7211 6.348458 GCAAGTTTCAGCTTTTCTTTTGGTTT 60.348 34.615 0.00 0.00 0.00 3.27
5581 7212 7.584108 CAAGTTTCAGCTTTTCTTTTGGTTTT 58.416 30.769 0.00 0.00 0.00 2.43
5582 7213 7.744087 AGTTTCAGCTTTTCTTTTGGTTTTT 57.256 28.000 0.00 0.00 0.00 1.94
5620 7251 3.965379 TGTAAACAAGGACATAGCCGA 57.035 42.857 0.00 0.00 0.00 5.54
5621 7252 4.274602 TGTAAACAAGGACATAGCCGAA 57.725 40.909 0.00 0.00 0.00 4.30
5622 7253 4.250464 TGTAAACAAGGACATAGCCGAAG 58.750 43.478 0.00 0.00 0.00 3.79
5623 7254 3.418684 AAACAAGGACATAGCCGAAGT 57.581 42.857 0.00 0.00 0.00 3.01
5624 7255 2.386661 ACAAGGACATAGCCGAAGTG 57.613 50.000 0.00 0.00 0.00 3.16
5625 7256 1.009829 CAAGGACATAGCCGAAGTGC 58.990 55.000 0.00 0.00 0.00 4.40
5626 7257 0.905357 AAGGACATAGCCGAAGTGCT 59.095 50.000 0.00 0.00 45.38 4.40
5627 7258 0.905357 AGGACATAGCCGAAGTGCTT 59.095 50.000 0.00 0.00 42.75 3.91
5628 7259 1.134670 AGGACATAGCCGAAGTGCTTC 60.135 52.381 2.04 2.04 42.75 3.86
5629 7260 1.405526 GGACATAGCCGAAGTGCTTCA 60.406 52.381 11.82 0.00 42.75 3.02
5630 7261 2.555199 GACATAGCCGAAGTGCTTCAT 58.445 47.619 11.82 0.91 42.75 2.57
5631 7262 2.283298 ACATAGCCGAAGTGCTTCATG 58.717 47.619 11.82 9.59 42.75 3.07
5632 7263 1.003116 CATAGCCGAAGTGCTTCATGC 60.003 52.381 11.82 12.26 42.75 4.06
5633 7264 0.250234 TAGCCGAAGTGCTTCATGCT 59.750 50.000 21.39 21.39 44.33 3.79
5634 7265 0.250234 AGCCGAAGTGCTTCATGCTA 59.750 50.000 18.32 0.00 42.07 3.49
5635 7266 0.375106 GCCGAAGTGCTTCATGCTAC 59.625 55.000 11.82 0.00 43.37 3.58
5636 7267 1.725641 CCGAAGTGCTTCATGCTACA 58.274 50.000 11.82 0.00 43.37 2.74
5637 7268 2.283298 CCGAAGTGCTTCATGCTACAT 58.717 47.619 11.82 0.00 43.37 2.29
5638 7269 2.031314 CCGAAGTGCTTCATGCTACATG 59.969 50.000 11.82 1.05 43.37 3.21
5639 7270 2.674852 CGAAGTGCTTCATGCTACATGT 59.325 45.455 2.69 2.69 43.37 3.21
5640 7271 3.484721 CGAAGTGCTTCATGCTACATGTG 60.485 47.826 9.11 0.00 43.37 3.21
5641 7272 3.063510 AGTGCTTCATGCTACATGTGT 57.936 42.857 9.11 0.00 43.37 3.72
5642 7273 4.206477 AGTGCTTCATGCTACATGTGTA 57.794 40.909 9.11 0.00 43.37 2.90
5643 7274 5.220548 GAAGTGCTTCATGCTACATGTGTAG 60.221 44.000 9.11 14.34 43.00 2.74
5660 7291 9.448438 ACATGTGTAGCACTTATTATTTCAGAA 57.552 29.630 0.00 0.00 35.11 3.02
5754 7385 9.869757 AAAACAGTTTTTCTTACTAAGCACATT 57.130 25.926 5.37 0.00 27.97 2.71
5774 7405 2.668212 TTTCTTGGCCGGACGCTG 60.668 61.111 5.05 0.00 37.74 5.18
5775 7406 4.697756 TTCTTGGCCGGACGCTGG 62.698 66.667 5.05 0.00 37.74 4.85
5800 7431 3.452264 TCAGACCATGTCCAATGTAGAGG 59.548 47.826 0.00 0.00 32.18 3.69
5843 7503 9.905713 ATCTTGGAGATGTGCTTAGTAAAATAA 57.094 29.630 0.00 0.00 32.80 1.40
5848 7508 9.162764 GGAGATGTGCTTAGTAAAATAAACTCA 57.837 33.333 0.00 0.00 0.00 3.41
5855 7515 9.832445 TGCTTAGTAAAATAAACTCAGGATAGG 57.168 33.333 0.00 0.00 0.00 2.57
5862 7522 7.573968 AAATAAACTCAGGATAGGAATGTGC 57.426 36.000 0.00 0.00 0.00 4.57
5863 7523 3.567478 AACTCAGGATAGGAATGTGCC 57.433 47.619 0.00 0.00 0.00 5.01
5864 7524 1.414181 ACTCAGGATAGGAATGTGCCG 59.586 52.381 0.00 0.00 0.00 5.69
5865 7525 1.688735 CTCAGGATAGGAATGTGCCGA 59.311 52.381 0.00 0.00 0.00 5.54
5866 7526 1.412710 TCAGGATAGGAATGTGCCGAC 59.587 52.381 0.00 0.00 0.00 4.79
5867 7527 0.759346 AGGATAGGAATGTGCCGACC 59.241 55.000 0.00 0.00 0.00 4.79
5868 7528 0.250338 GGATAGGAATGTGCCGACCC 60.250 60.000 0.00 0.00 0.00 4.46
5869 7529 0.600255 GATAGGAATGTGCCGACCCG 60.600 60.000 0.00 0.00 0.00 5.28
5880 7540 2.584608 CGACCCGGATCTGGCTTT 59.415 61.111 15.84 0.89 0.00 3.51
5881 7541 1.815421 CGACCCGGATCTGGCTTTG 60.815 63.158 15.84 3.98 0.00 2.77
5882 7542 1.452108 GACCCGGATCTGGCTTTGG 60.452 63.158 15.84 3.59 0.00 3.28
5883 7543 1.910580 GACCCGGATCTGGCTTTGGA 61.911 60.000 15.84 0.00 0.00 3.53
5884 7544 1.281925 ACCCGGATCTGGCTTTGGAT 61.282 55.000 15.84 0.00 0.00 3.41
5885 7545 0.536006 CCCGGATCTGGCTTTGGATC 60.536 60.000 15.84 0.00 38.01 3.36
5886 7546 0.471617 CCGGATCTGGCTTTGGATCT 59.528 55.000 7.89 0.00 38.56 2.75
5887 7547 1.590932 CGGATCTGGCTTTGGATCTG 58.409 55.000 0.00 0.00 38.56 2.90
5888 7548 1.316651 GGATCTGGCTTTGGATCTGC 58.683 55.000 0.00 0.00 38.56 4.26
5889 7549 1.316651 GATCTGGCTTTGGATCTGCC 58.683 55.000 10.90 10.90 46.26 4.85
5890 7550 0.106318 ATCTGGCTTTGGATCTGCCC 60.106 55.000 13.77 0.00 45.56 5.36
5891 7551 1.755783 CTGGCTTTGGATCTGCCCC 60.756 63.158 13.77 1.61 45.56 5.80
5892 7552 2.220786 CTGGCTTTGGATCTGCCCCT 62.221 60.000 13.77 0.00 45.56 4.79
5893 7553 1.454663 GGCTTTGGATCTGCCCCTC 60.455 63.158 7.87 0.00 40.71 4.30
5894 7554 1.611965 GCTTTGGATCTGCCCCTCT 59.388 57.895 0.00 0.00 34.97 3.69
5895 7555 0.750911 GCTTTGGATCTGCCCCTCTG 60.751 60.000 0.00 0.00 34.97 3.35
5896 7556 0.106819 CTTTGGATCTGCCCCTCTGG 60.107 60.000 0.00 0.00 34.97 3.86
5905 7565 2.290393 CCCCTCTGGCCCCATAGA 59.710 66.667 0.00 0.00 0.00 1.98
5906 7566 2.150051 CCCCTCTGGCCCCATAGAC 61.150 68.421 0.00 0.00 0.00 2.59
5907 7567 1.384502 CCCTCTGGCCCCATAGACA 60.385 63.158 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.317613 TCATGCGTTCCAAAGTTGCT 58.682 45.000 0.00 0.00 0.00 3.91
23 24 3.058016 ACTCATCATGCGTTCCAAAGTTG 60.058 43.478 0.00 0.00 0.00 3.16
34 35 2.358957 TCCTTTTGGACTCATCATGCG 58.641 47.619 0.00 0.00 45.19 4.73
61 62 1.209261 CCTTTGCTCCTTCTCTCCTCC 59.791 57.143 0.00 0.00 0.00 4.30
79 80 0.325671 TCATTCGCTCCTCCTTCCCT 60.326 55.000 0.00 0.00 0.00 4.20
88 89 6.761099 TCTAGGTATATCTTCATTCGCTCC 57.239 41.667 0.00 0.00 0.00 4.70
147 148 4.070716 CTCAATGTCAAGCTTCCTCTTGT 58.929 43.478 0.00 0.00 42.90 3.16
173 174 0.681733 AGCTTCTTCAGTTGAGCGGA 59.318 50.000 0.00 0.00 0.00 5.54
181 182 2.360844 TCGATCTCGAGCTTCTTCAGT 58.639 47.619 7.81 0.00 44.22 3.41
277 278 0.036858 GCGAACCAAGCTTCCTCTCT 60.037 55.000 0.00 0.00 0.00 3.10
300 301 1.066858 GGCAAACATCTCCTCTGACGA 60.067 52.381 0.00 0.00 0.00 4.20
301 302 1.338105 TGGCAAACATCTCCTCTGACG 60.338 52.381 0.00 0.00 0.00 4.35
302 303 2.479566 TGGCAAACATCTCCTCTGAC 57.520 50.000 0.00 0.00 0.00 3.51
303 304 2.639347 TCTTGGCAAACATCTCCTCTGA 59.361 45.455 0.00 0.00 0.00 3.27
304 305 2.746362 GTCTTGGCAAACATCTCCTCTG 59.254 50.000 0.00 0.00 0.00 3.35
305 306 2.613977 CGTCTTGGCAAACATCTCCTCT 60.614 50.000 0.00 0.00 0.00 3.69
306 307 1.734465 CGTCTTGGCAAACATCTCCTC 59.266 52.381 0.00 0.00 0.00 3.71
307 308 1.611673 CCGTCTTGGCAAACATCTCCT 60.612 52.381 0.00 0.00 0.00 3.69
308 309 0.804989 CCGTCTTGGCAAACATCTCC 59.195 55.000 0.00 0.00 0.00 3.71
319 320 0.108138 CCTAGTTCAGGCCGTCTTGG 60.108 60.000 0.00 1.49 37.70 3.61
320 321 3.442996 CCTAGTTCAGGCCGTCTTG 57.557 57.895 0.00 0.00 37.70 3.02
347 348 2.717044 CGGCCATAGTCCACGACCA 61.717 63.158 2.24 0.00 32.18 4.02
349 350 0.804933 GAACGGCCATAGTCCACGAC 60.805 60.000 2.24 0.00 0.00 4.34
374 375 1.529244 GGCACACCAGTCAGCCTTT 60.529 57.895 0.00 0.00 43.70 3.11
403 404 0.802607 GTTTCACGCCGGCAACAAAA 60.803 50.000 28.98 17.24 0.00 2.44
411 412 2.742372 CCTCCAGTTTCACGCCGG 60.742 66.667 0.00 0.00 0.00 6.13
464 465 1.210155 GGTTCACGCCAGTTCATGC 59.790 57.895 0.00 0.00 0.00 4.06
488 489 2.811431 TCCATAGTTCAAGCCAACGTTG 59.189 45.455 21.47 21.47 0.00 4.10
489 490 2.812011 GTCCATAGTTCAAGCCAACGTT 59.188 45.455 0.00 0.00 0.00 3.99
490 491 2.423577 GTCCATAGTTCAAGCCAACGT 58.576 47.619 0.00 0.00 0.00 3.99
491 492 1.393539 CGTCCATAGTTCAAGCCAACG 59.606 52.381 0.00 0.00 0.00 4.10
492 493 1.130561 GCGTCCATAGTTCAAGCCAAC 59.869 52.381 0.00 0.00 0.00 3.77
493 494 1.003118 AGCGTCCATAGTTCAAGCCAA 59.997 47.619 0.00 0.00 0.00 4.52
494 495 0.613260 AGCGTCCATAGTTCAAGCCA 59.387 50.000 0.00 0.00 0.00 4.75
495 496 1.009829 CAGCGTCCATAGTTCAAGCC 58.990 55.000 0.00 0.00 0.00 4.35
496 497 0.375106 GCAGCGTCCATAGTTCAAGC 59.625 55.000 0.00 0.00 0.00 4.01
497 498 1.009829 GGCAGCGTCCATAGTTCAAG 58.990 55.000 0.00 0.00 0.00 3.02
498 499 0.323302 TGGCAGCGTCCATAGTTCAA 59.677 50.000 0.00 0.00 0.00 2.69
499 500 0.541392 ATGGCAGCGTCCATAGTTCA 59.459 50.000 10.48 0.00 44.60 3.18
500 501 1.668419 AATGGCAGCGTCCATAGTTC 58.332 50.000 12.20 0.00 45.64 3.01
501 502 2.128771 AAATGGCAGCGTCCATAGTT 57.871 45.000 12.20 3.11 45.64 2.24
509 510 2.158900 AGATGTAGCTAAATGGCAGCGT 60.159 45.455 0.00 0.00 43.97 5.07
532 553 4.879104 TGCAAATTTTGGAAAGCAACAG 57.121 36.364 10.96 0.00 0.00 3.16
543 564 2.096811 GTCCACGTGCATGCAAATTTTG 60.097 45.455 24.58 14.20 0.00 2.44
575 596 0.968405 AACACATGGCCGCATCTTTT 59.032 45.000 0.00 0.00 0.00 2.27
579 600 2.491152 CCAACACATGGCCGCATC 59.509 61.111 0.00 0.00 43.80 3.91
608 629 2.159476 CCGTCTGGATTTGTGAATGCTG 60.159 50.000 0.00 0.00 37.49 4.41
609 630 2.086869 CCGTCTGGATTTGTGAATGCT 58.913 47.619 0.00 0.00 37.49 3.79
631 652 2.763215 GGGTGGCAATGGGAGACA 59.237 61.111 0.00 0.00 0.00 3.41
633 654 3.346734 GGGGGTGGCAATGGGAGA 61.347 66.667 0.00 0.00 0.00 3.71
635 656 2.794803 TTTGGGGGTGGCAATGGGA 61.795 57.895 0.00 0.00 0.00 4.37
657 679 7.082357 GACATTCGTTTTGTCTGAATTTCAC 57.918 36.000 0.00 0.00 40.26 3.18
687 709 4.980805 GGCAACTCCCACGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
887 936 2.710096 TTTGCTGGTATGCCCTAGTC 57.290 50.000 0.00 0.00 0.00 2.59
932 1115 1.829523 AATTGCCTGCCGGTTTGCAT 61.830 50.000 13.35 0.00 41.16 3.96
1010 1194 0.470268 GGGATACGCCTCTCCTCCTT 60.470 60.000 0.00 0.00 36.66 3.36
1136 1325 4.837797 CATTGCGGGGGCCATGGA 62.838 66.667 18.40 0.00 0.00 3.41
1516 1705 5.996513 TGATAGCAGTGCTACTAGGTAGTAC 59.003 44.000 26.70 14.81 46.74 2.73
1517 1706 6.183810 TGATAGCAGTGCTACTAGGTAGTA 57.816 41.667 26.70 2.96 44.24 1.82
1518 1707 5.050126 TGATAGCAGTGCTACTAGGTAGT 57.950 43.478 26.70 8.65 44.24 2.73
1520 1709 5.642491 CGTATGATAGCAGTGCTACTAGGTA 59.358 44.000 26.70 12.43 44.24 3.08
1521 1710 4.456222 CGTATGATAGCAGTGCTACTAGGT 59.544 45.833 26.70 10.97 44.24 3.08
1559 1748 4.142038 TGCAAGCGTAGATAGATAGGTGA 58.858 43.478 0.00 0.00 0.00 4.02
1562 1751 4.480541 CACTGCAAGCGTAGATAGATAGG 58.519 47.826 0.00 0.00 37.60 2.57
1727 1945 3.118408 ACGAGTAATAATCTTGCCCTGCA 60.118 43.478 0.00 0.00 36.47 4.41
1773 2070 9.495754 TTCTCAACAAAACAAAACAAAAGTTTG 57.504 25.926 2.22 2.22 43.62 2.93
1776 2073 9.877137 GATTTCTCAACAAAACAAAACAAAAGT 57.123 25.926 0.00 0.00 0.00 2.66
1779 2076 8.716909 GGAGATTTCTCAACAAAACAAAACAAA 58.283 29.630 9.65 0.00 44.60 2.83
1780 2077 7.062839 CGGAGATTTCTCAACAAAACAAAACAA 59.937 33.333 9.65 0.00 44.60 2.83
1781 2078 6.529829 CGGAGATTTCTCAACAAAACAAAACA 59.470 34.615 9.65 0.00 44.60 2.83
1782 2079 6.750039 TCGGAGATTTCTCAACAAAACAAAAC 59.250 34.615 9.65 0.00 44.60 2.43
1842 2140 5.365314 TGTATTGCCCTTTCCAACTTCTTTT 59.635 36.000 0.00 0.00 0.00 2.27
1891 2189 7.174253 TGCTTTGTACATGTAGTAAAAGGGAAG 59.826 37.037 23.74 11.71 34.71 3.46
1929 2228 0.249120 CGGTGGAACAGACATGCCTA 59.751 55.000 0.00 0.00 41.80 3.93
2123 2432 5.414765 AGATGCATGCATGATAATGGTACAG 59.585 40.000 36.73 0.00 38.32 2.74
2124 2433 5.182380 CAGATGCATGCATGATAATGGTACA 59.818 40.000 36.73 14.82 39.06 2.90
2347 2969 5.702266 AGTGCAGTATATGGTAGTAGTGGA 58.298 41.667 0.00 0.00 0.00 4.02
2355 2977 5.707242 GCAGTAGAGTGCAGTATATGGTA 57.293 43.478 4.43 0.00 43.41 3.25
2497 3165 8.840321 CAGTATAAAATACAAGATGGAGGGTTG 58.160 37.037 0.33 0.00 0.00 3.77
2507 3175 7.833786 ACCGAGTGTCAGTATAAAATACAAGA 58.166 34.615 0.33 0.00 0.00 3.02
2776 3866 6.616947 TGCTAGTTGTGTTTGGCATTATTAC 58.383 36.000 0.00 0.00 0.00 1.89
3036 4162 6.312399 TGAAACGATACATGCTTTTGTTCT 57.688 33.333 0.00 0.00 0.00 3.01
3037 4163 6.984740 TTGAAACGATACATGCTTTTGTTC 57.015 33.333 0.00 0.00 0.00 3.18
3039 4165 7.763172 TTTTTGAAACGATACATGCTTTTGT 57.237 28.000 0.00 0.00 0.00 2.83
3061 4187 8.567104 ACATGCTTTTGTTCTTTTGTTCTTTTT 58.433 25.926 0.00 0.00 0.00 1.94
3062 4188 8.016801 CACATGCTTTTGTTCTTTTGTTCTTTT 58.983 29.630 0.00 0.00 0.00 2.27
3063 4189 7.173047 ACACATGCTTTTGTTCTTTTGTTCTTT 59.827 29.630 0.00 0.00 0.00 2.52
3064 4190 6.650390 ACACATGCTTTTGTTCTTTTGTTCTT 59.350 30.769 0.00 0.00 0.00 2.52
3065 4191 6.091169 CACACATGCTTTTGTTCTTTTGTTCT 59.909 34.615 0.00 0.00 0.00 3.01
3066 4192 6.128580 ACACACATGCTTTTGTTCTTTTGTTC 60.129 34.615 0.00 0.00 0.00 3.18
3067 4193 5.700373 ACACACATGCTTTTGTTCTTTTGTT 59.300 32.000 0.00 0.00 0.00 2.83
3068 4194 5.120519 CACACACATGCTTTTGTTCTTTTGT 59.879 36.000 0.00 0.00 0.00 2.83
3069 4195 5.120519 ACACACACATGCTTTTGTTCTTTTG 59.879 36.000 0.00 0.00 0.00 2.44
3070 4196 5.237048 ACACACACATGCTTTTGTTCTTTT 58.763 33.333 0.00 0.00 0.00 2.27
3071 4197 4.819769 ACACACACATGCTTTTGTTCTTT 58.180 34.783 0.00 0.00 0.00 2.52
3072 4198 4.454728 ACACACACATGCTTTTGTTCTT 57.545 36.364 0.00 0.00 0.00 2.52
3117 4243 8.814038 AGAATTTTGGTTGCAAGTATCTATCT 57.186 30.769 0.00 0.00 0.00 1.98
3452 4589 1.339535 TGCGCAAATCAGTCCCACATA 60.340 47.619 8.16 0.00 0.00 2.29
3458 4595 1.063174 GTGATCTGCGCAAATCAGTCC 59.937 52.381 26.05 11.52 32.76 3.85
4090 5269 0.391528 TGCACTGTCATCGACCATGG 60.392 55.000 11.19 11.19 32.64 3.66
4223 5510 3.268013 AGCAGTGCAAAACGTATCAAC 57.732 42.857 19.20 0.00 0.00 3.18
4430 5991 6.251471 ACTTACTGCTTCTACTAGGTGGTAA 58.749 40.000 0.00 0.00 0.00 2.85
4482 6048 8.358148 ACAAGTACAATATATGGAAGAGGTACG 58.642 37.037 0.00 0.00 36.05 3.67
4509 6077 5.466393 GGTTAAAGTTGCAATTTCAGCATGT 59.534 36.000 7.72 0.00 42.33 3.21
4626 6199 0.629596 AGGAGGACGGTGATGAGGTA 59.370 55.000 0.00 0.00 0.00 3.08
4763 6336 7.592885 ACAGTAGTAACTTCAGTTTCCAGTA 57.407 36.000 0.00 0.00 39.31 2.74
4864 6437 2.858622 CGGAGCTTCCATGCTTTGA 58.141 52.632 0.00 0.00 44.17 2.69
4966 6539 7.744087 TGAAACAACATCTGCTAGTTACAAT 57.256 32.000 0.00 0.00 0.00 2.71
5067 6640 3.754965 TCAGAAAAAGGGGTCACAGATG 58.245 45.455 0.00 0.00 0.00 2.90
5195 6768 2.288666 ACTGCAACTGTGTTGTCGAAT 58.711 42.857 11.35 0.00 0.00 3.34
5196 6769 1.732941 ACTGCAACTGTGTTGTCGAA 58.267 45.000 11.35 0.00 0.00 3.71
5197 6770 2.159156 AGTACTGCAACTGTGTTGTCGA 60.159 45.455 11.35 0.00 0.00 4.20
5198 6771 2.201732 AGTACTGCAACTGTGTTGTCG 58.798 47.619 11.35 6.10 0.00 4.35
5229 6802 5.186256 TGGCCTTATCACCTTGTATTCAA 57.814 39.130 3.32 0.00 0.00 2.69
5241 6815 7.011950 CGAATTACATTGTACTTGGCCTTATCA 59.988 37.037 3.32 0.00 0.00 2.15
5256 6830 3.942539 TGTCATCGCCGAATTACATTG 57.057 42.857 0.00 0.00 0.00 2.82
5261 6835 5.172934 ACTAAAGTTGTCATCGCCGAATTA 58.827 37.500 0.00 0.00 0.00 1.40
5313 6939 5.178061 CCCAAAAGAAAAGCTGAAACTTGT 58.822 37.500 0.00 0.00 0.00 3.16
5316 6942 3.774766 ACCCCAAAAGAAAAGCTGAAACT 59.225 39.130 0.00 0.00 0.00 2.66
5374 7005 4.681978 GCACTTCGGCCCTGACGT 62.682 66.667 0.00 0.00 34.61 4.34
5376 7007 2.045926 ATGCACTTCGGCCCTGAC 60.046 61.111 0.00 0.00 0.00 3.51
5378 7009 1.452651 ATGATGCACTTCGGCCCTG 60.453 57.895 0.00 0.00 0.00 4.45
5400 7031 8.574251 TCTTAAATAATAAGTGCCACATGTGT 57.426 30.769 23.79 8.06 0.00 3.72
5461 7092 7.796054 AGTATCCTGAGCTTATTTCTTTGCTA 58.204 34.615 0.00 0.00 35.76 3.49
5462 7093 6.657875 AGTATCCTGAGCTTATTTCTTTGCT 58.342 36.000 0.00 0.00 38.59 3.91
5463 7094 6.934048 AGTATCCTGAGCTTATTTCTTTGC 57.066 37.500 0.00 0.00 0.00 3.68
5464 7095 7.987458 TGGTAGTATCCTGAGCTTATTTCTTTG 59.013 37.037 0.00 0.00 0.00 2.77
5465 7096 8.090788 TGGTAGTATCCTGAGCTTATTTCTTT 57.909 34.615 0.00 0.00 0.00 2.52
5466 7097 7.202047 CCTGGTAGTATCCTGAGCTTATTTCTT 60.202 40.741 0.00 0.00 0.00 2.52
5467 7098 6.268847 CCTGGTAGTATCCTGAGCTTATTTCT 59.731 42.308 0.00 0.00 0.00 2.52
5468 7099 6.267928 TCCTGGTAGTATCCTGAGCTTATTTC 59.732 42.308 0.00 0.00 0.00 2.17
5469 7100 6.143915 TCCTGGTAGTATCCTGAGCTTATTT 58.856 40.000 0.00 0.00 0.00 1.40
5470 7101 5.716979 TCCTGGTAGTATCCTGAGCTTATT 58.283 41.667 0.00 0.00 0.00 1.40
5471 7102 5.340891 TCCTGGTAGTATCCTGAGCTTAT 57.659 43.478 0.00 0.00 0.00 1.73
5472 7103 4.808767 TCCTGGTAGTATCCTGAGCTTA 57.191 45.455 0.00 0.00 0.00 3.09
5473 7104 3.689872 TCCTGGTAGTATCCTGAGCTT 57.310 47.619 0.00 0.00 0.00 3.74
5474 7105 3.501385 GGATCCTGGTAGTATCCTGAGCT 60.501 52.174 3.84 0.00 36.93 4.09
5475 7106 2.829120 GGATCCTGGTAGTATCCTGAGC 59.171 54.545 3.84 0.00 36.93 4.26
5476 7107 3.085533 CGGATCCTGGTAGTATCCTGAG 58.914 54.545 10.75 0.00 37.60 3.35
5477 7108 2.225041 CCGGATCCTGGTAGTATCCTGA 60.225 54.545 10.75 0.00 37.60 3.86
5478 7109 2.171840 CCGGATCCTGGTAGTATCCTG 58.828 57.143 10.75 1.14 37.60 3.86
5479 7110 2.041891 CTCCGGATCCTGGTAGTATCCT 59.958 54.545 18.33 0.00 37.60 3.24
5480 7111 2.041350 TCTCCGGATCCTGGTAGTATCC 59.959 54.545 18.33 2.73 36.59 2.59
5481 7112 3.436577 TCTCCGGATCCTGGTAGTATC 57.563 52.381 18.33 0.00 0.00 2.24
5482 7113 3.333980 TCATCTCCGGATCCTGGTAGTAT 59.666 47.826 18.33 8.35 0.00 2.12
5483 7114 2.714793 TCATCTCCGGATCCTGGTAGTA 59.285 50.000 18.33 6.86 0.00 1.82
5484 7115 1.499438 TCATCTCCGGATCCTGGTAGT 59.501 52.381 18.33 6.57 0.00 2.73
5485 7116 2.166829 CTCATCTCCGGATCCTGGTAG 58.833 57.143 18.33 14.71 0.00 3.18
5486 7117 1.823648 GCTCATCTCCGGATCCTGGTA 60.824 57.143 18.33 10.89 0.00 3.25
5487 7118 1.118356 GCTCATCTCCGGATCCTGGT 61.118 60.000 18.33 0.00 0.00 4.00
5488 7119 1.117749 TGCTCATCTCCGGATCCTGG 61.118 60.000 3.57 12.90 0.00 4.45
5489 7120 0.317799 CTGCTCATCTCCGGATCCTG 59.682 60.000 3.57 2.93 0.00 3.86
5490 7121 0.831288 CCTGCTCATCTCCGGATCCT 60.831 60.000 3.57 0.00 0.00 3.24
5491 7122 1.670590 CCTGCTCATCTCCGGATCC 59.329 63.158 3.57 0.00 0.00 3.36
5492 7123 0.829602 TCCCTGCTCATCTCCGGATC 60.830 60.000 3.57 0.00 0.00 3.36
5493 7124 0.178909 ATCCCTGCTCATCTCCGGAT 60.179 55.000 3.57 0.00 0.00 4.18
5494 7125 1.117749 CATCCCTGCTCATCTCCGGA 61.118 60.000 2.93 2.93 0.00 5.14
5495 7126 1.370437 CATCCCTGCTCATCTCCGG 59.630 63.158 0.00 0.00 0.00 5.14
5496 7127 0.033228 GACATCCCTGCTCATCTCCG 59.967 60.000 0.00 0.00 0.00 4.63
5497 7128 1.126488 TGACATCCCTGCTCATCTCC 58.874 55.000 0.00 0.00 0.00 3.71
5498 7129 2.170187 AGTTGACATCCCTGCTCATCTC 59.830 50.000 0.00 0.00 0.00 2.75
5499 7130 2.194859 AGTTGACATCCCTGCTCATCT 58.805 47.619 0.00 0.00 0.00 2.90
5500 7131 2.706339 AGTTGACATCCCTGCTCATC 57.294 50.000 0.00 0.00 0.00 2.92
5501 7132 3.446442 AAAGTTGACATCCCTGCTCAT 57.554 42.857 0.00 0.00 0.00 2.90
5502 7133 2.957402 AAAGTTGACATCCCTGCTCA 57.043 45.000 0.00 0.00 0.00 4.26
5503 7134 4.327680 ACTAAAAGTTGACATCCCTGCTC 58.672 43.478 0.00 0.00 0.00 4.26
5504 7135 4.373156 ACTAAAAGTTGACATCCCTGCT 57.627 40.909 0.00 0.00 0.00 4.24
5516 7147 9.816354 AAATTGTCATGCTTACAACTAAAAGTT 57.184 25.926 0.93 0.00 39.51 2.66
5517 7148 9.816354 AAAATTGTCATGCTTACAACTAAAAGT 57.184 25.926 0.93 0.00 39.51 2.66
5544 7175 4.099881 AGCTGAAACTTGCCATCTGAAAAA 59.900 37.500 0.00 0.00 0.00 1.94
5545 7176 3.638160 AGCTGAAACTTGCCATCTGAAAA 59.362 39.130 0.00 0.00 0.00 2.29
5546 7177 3.225104 AGCTGAAACTTGCCATCTGAAA 58.775 40.909 0.00 0.00 0.00 2.69
5547 7178 2.867624 AGCTGAAACTTGCCATCTGAA 58.132 42.857 0.00 0.00 0.00 3.02
5548 7179 2.574006 AGCTGAAACTTGCCATCTGA 57.426 45.000 0.00 0.00 0.00 3.27
5549 7180 3.655276 AAAGCTGAAACTTGCCATCTG 57.345 42.857 0.00 0.00 0.00 2.90
5550 7181 3.893813 AGAAAAGCTGAAACTTGCCATCT 59.106 39.130 0.00 0.00 0.00 2.90
5551 7182 4.248691 AGAAAAGCTGAAACTTGCCATC 57.751 40.909 0.00 0.00 0.00 3.51
5552 7183 4.677673 AAGAAAAGCTGAAACTTGCCAT 57.322 36.364 0.00 0.00 0.00 4.40
5553 7184 4.470334 AAAGAAAAGCTGAAACTTGCCA 57.530 36.364 0.00 0.00 0.00 4.92
5554 7185 4.034394 CCAAAAGAAAAGCTGAAACTTGCC 59.966 41.667 0.00 0.00 0.00 4.52
5555 7186 4.631377 ACCAAAAGAAAAGCTGAAACTTGC 59.369 37.500 0.00 0.00 0.00 4.01
5556 7187 6.726258 AACCAAAAGAAAAGCTGAAACTTG 57.274 33.333 0.00 0.00 0.00 3.16
5557 7188 7.744087 AAAACCAAAAGAAAAGCTGAAACTT 57.256 28.000 0.00 0.00 0.00 2.66
5558 7189 7.744087 AAAAACCAAAAGAAAAGCTGAAACT 57.256 28.000 0.00 0.00 0.00 2.66
5591 7222 8.565416 GCTATGTCCTTGTTTACAACTAAAGTT 58.435 33.333 0.00 0.00 39.12 2.66
5592 7223 7.174426 GGCTATGTCCTTGTTTACAACTAAAGT 59.826 37.037 0.00 0.00 0.00 2.66
5593 7224 7.527457 GGCTATGTCCTTGTTTACAACTAAAG 58.473 38.462 0.00 0.00 0.00 1.85
5594 7225 6.148150 CGGCTATGTCCTTGTTTACAACTAAA 59.852 38.462 0.00 0.00 0.00 1.85
5595 7226 5.640357 CGGCTATGTCCTTGTTTACAACTAA 59.360 40.000 0.00 0.00 0.00 2.24
5596 7227 5.047164 TCGGCTATGTCCTTGTTTACAACTA 60.047 40.000 0.00 0.00 0.00 2.24
5597 7228 4.000988 CGGCTATGTCCTTGTTTACAACT 58.999 43.478 0.00 0.00 0.00 3.16
5598 7229 3.998341 TCGGCTATGTCCTTGTTTACAAC 59.002 43.478 0.00 0.00 0.00 3.32
5599 7230 4.274602 TCGGCTATGTCCTTGTTTACAA 57.725 40.909 0.00 0.00 0.00 2.41
5600 7231 3.965379 TCGGCTATGTCCTTGTTTACA 57.035 42.857 0.00 0.00 0.00 2.41
5601 7232 4.092968 CACTTCGGCTATGTCCTTGTTTAC 59.907 45.833 0.00 0.00 0.00 2.01
5602 7233 4.250464 CACTTCGGCTATGTCCTTGTTTA 58.750 43.478 0.00 0.00 0.00 2.01
5603 7234 3.074412 CACTTCGGCTATGTCCTTGTTT 58.926 45.455 0.00 0.00 0.00 2.83
5604 7235 2.699954 CACTTCGGCTATGTCCTTGTT 58.300 47.619 0.00 0.00 0.00 2.83
5605 7236 1.676014 GCACTTCGGCTATGTCCTTGT 60.676 52.381 0.00 0.00 0.00 3.16
5606 7237 1.009829 GCACTTCGGCTATGTCCTTG 58.990 55.000 0.00 0.00 0.00 3.61
5607 7238 0.905357 AGCACTTCGGCTATGTCCTT 59.095 50.000 0.00 0.00 43.70 3.36
5608 7239 0.905357 AAGCACTTCGGCTATGTCCT 59.095 50.000 0.00 0.00 45.07 3.85
5609 7240 1.291132 GAAGCACTTCGGCTATGTCC 58.709 55.000 0.00 0.00 45.07 4.02
5610 7241 2.010145 TGAAGCACTTCGGCTATGTC 57.990 50.000 5.95 0.00 45.07 3.06
5611 7242 2.283298 CATGAAGCACTTCGGCTATGT 58.717 47.619 5.95 0.00 45.07 2.29
5612 7243 1.003116 GCATGAAGCACTTCGGCTATG 60.003 52.381 15.52 10.28 45.07 2.23
5613 7244 1.303309 GCATGAAGCACTTCGGCTAT 58.697 50.000 15.52 0.00 45.07 2.97
5614 7245 2.767536 GCATGAAGCACTTCGGCTA 58.232 52.632 15.52 0.00 45.07 3.93
5634 7265 9.448438 TTCTGAAATAATAAGTGCTACACATGT 57.552 29.630 0.00 0.00 36.74 3.21
5672 7303 9.483916 CTCCGGTAAAAATTGGTTTATTTTTCT 57.516 29.630 0.00 0.00 43.19 2.52
5673 7304 8.225107 GCTCCGGTAAAAATTGGTTTATTTTTC 58.775 33.333 0.00 4.08 43.19 2.29
5674 7305 7.715686 TGCTCCGGTAAAAATTGGTTTATTTTT 59.284 29.630 0.00 10.70 45.07 1.94
5675 7306 7.217906 TGCTCCGGTAAAAATTGGTTTATTTT 58.782 30.769 0.00 0.00 38.90 1.82
5676 7307 6.760291 TGCTCCGGTAAAAATTGGTTTATTT 58.240 32.000 0.00 0.00 0.00 1.40
5677 7308 6.347859 TGCTCCGGTAAAAATTGGTTTATT 57.652 33.333 0.00 0.00 0.00 1.40
5678 7309 5.986501 TGCTCCGGTAAAAATTGGTTTAT 57.013 34.783 0.00 0.00 0.00 1.40
5679 7310 5.786264 TTGCTCCGGTAAAAATTGGTTTA 57.214 34.783 0.00 0.00 0.00 2.01
5680 7311 4.674281 TTGCTCCGGTAAAAATTGGTTT 57.326 36.364 0.00 0.00 0.00 3.27
5681 7312 4.342665 TCTTTGCTCCGGTAAAAATTGGTT 59.657 37.500 0.00 0.00 0.00 3.67
5682 7313 3.892588 TCTTTGCTCCGGTAAAAATTGGT 59.107 39.130 0.00 0.00 0.00 3.67
5683 7314 4.513198 TCTTTGCTCCGGTAAAAATTGG 57.487 40.909 0.00 0.00 0.00 3.16
5684 7315 8.527567 TTATTTCTTTGCTCCGGTAAAAATTG 57.472 30.769 0.00 0.00 0.00 2.32
5685 7316 7.330946 GCTTATTTCTTTGCTCCGGTAAAAATT 59.669 33.333 0.00 0.82 0.00 1.82
5686 7317 6.811665 GCTTATTTCTTTGCTCCGGTAAAAAT 59.188 34.615 0.00 3.18 0.00 1.82
5687 7318 6.153756 GCTTATTTCTTTGCTCCGGTAAAAA 58.846 36.000 0.00 0.00 0.00 1.94
5688 7319 5.241949 TGCTTATTTCTTTGCTCCGGTAAAA 59.758 36.000 0.00 0.00 0.00 1.52
5689 7320 4.762765 TGCTTATTTCTTTGCTCCGGTAAA 59.237 37.500 0.00 1.15 0.00 2.01
5690 7321 4.328536 TGCTTATTTCTTTGCTCCGGTAA 58.671 39.130 0.00 0.00 0.00 2.85
5691 7322 3.945346 TGCTTATTTCTTTGCTCCGGTA 58.055 40.909 0.00 0.00 0.00 4.02
5692 7323 2.790433 TGCTTATTTCTTTGCTCCGGT 58.210 42.857 0.00 0.00 0.00 5.28
5693 7324 4.107622 CAATGCTTATTTCTTTGCTCCGG 58.892 43.478 0.00 0.00 0.00 5.14
5694 7325 4.985413 TCAATGCTTATTTCTTTGCTCCG 58.015 39.130 0.00 0.00 0.00 4.63
5695 7326 6.823678 CATCAATGCTTATTTCTTTGCTCC 57.176 37.500 0.00 0.00 0.00 4.70
5727 7358 9.869757 ATGTGCTTAGTAAGAAAAACTGTTTTT 57.130 25.926 26.25 26.25 44.93 1.94
5728 7359 9.869757 AATGTGCTTAGTAAGAAAAACTGTTTT 57.130 25.926 14.27 12.50 39.70 2.43
5729 7360 9.869757 AAATGTGCTTAGTAAGAAAAACTGTTT 57.130 25.926 14.27 0.00 0.00 2.83
5730 7361 9.516314 GAAATGTGCTTAGTAAGAAAAACTGTT 57.484 29.630 14.27 4.68 0.00 3.16
5731 7362 8.903820 AGAAATGTGCTTAGTAAGAAAAACTGT 58.096 29.630 14.27 0.00 0.00 3.55
5732 7363 9.736023 AAGAAATGTGCTTAGTAAGAAAAACTG 57.264 29.630 14.27 0.00 0.00 3.16
5737 7368 9.950680 CAAGAAAGAAATGTGCTTAGTAAGAAA 57.049 29.630 14.27 0.00 0.00 2.52
5740 7371 6.803807 GCCAAGAAAGAAATGTGCTTAGTAAG 59.196 38.462 5.47 5.47 0.00 2.34
5754 7385 1.964373 GCGTCCGGCCAAGAAAGAA 60.964 57.895 2.24 0.00 34.80 2.52
5775 7406 2.783135 ACATTGGACATGGTCTGACAC 58.217 47.619 10.38 0.00 32.47 3.67
5789 7420 5.104360 TCCCTCAAAAGATCCTCTACATTGG 60.104 44.000 0.00 0.00 0.00 3.16
5800 7431 4.826183 CCAAGATCCATCCCTCAAAAGATC 59.174 45.833 0.00 0.00 0.00 2.75
5843 7503 2.158900 CGGCACATTCCTATCCTGAGTT 60.159 50.000 0.00 0.00 0.00 3.01
5848 7508 0.759346 GGTCGGCACATTCCTATCCT 59.241 55.000 0.00 0.00 0.00 3.24
5863 7523 1.815421 CAAAGCCAGATCCGGGTCG 60.815 63.158 9.59 4.24 35.11 4.79
5864 7524 1.452108 CCAAAGCCAGATCCGGGTC 60.452 63.158 6.61 6.61 35.11 4.46
5865 7525 1.281925 ATCCAAAGCCAGATCCGGGT 61.282 55.000 0.00 0.00 38.81 5.28
5866 7526 0.536006 GATCCAAAGCCAGATCCGGG 60.536 60.000 0.00 0.00 34.11 5.73
5867 7527 0.471617 AGATCCAAAGCCAGATCCGG 59.528 55.000 0.00 0.00 39.83 5.14
5868 7528 1.590932 CAGATCCAAAGCCAGATCCG 58.409 55.000 0.00 0.00 39.83 4.18
5869 7529 1.316651 GCAGATCCAAAGCCAGATCC 58.683 55.000 0.00 0.00 39.83 3.36
5876 7536 0.750911 CAGAGGGGCAGATCCAAAGC 60.751 60.000 0.00 0.00 36.21 3.51
5877 7537 0.106819 CCAGAGGGGCAGATCCAAAG 60.107 60.000 0.00 0.00 36.21 2.77
5878 7538 2.001803 CCAGAGGGGCAGATCCAAA 58.998 57.895 0.00 0.00 36.21 3.28
5879 7539 3.745546 CCAGAGGGGCAGATCCAA 58.254 61.111 0.00 0.00 36.21 3.53
5888 7548 2.150051 GTCTATGGGGCCAGAGGGG 61.150 68.421 4.39 0.00 36.09 4.79
5889 7549 1.384502 TGTCTATGGGGCCAGAGGG 60.385 63.158 4.39 0.00 36.09 4.30
5890 7550 4.399764 TGTCTATGGGGCCAGAGG 57.600 61.111 4.39 0.00 36.09 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.