Multiple sequence alignment - TraesCS5D01G159000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G159000 chr5D 100.000 2794 0 0 1 2794 247071650 247074443 0.000000e+00 5160.0
1 TraesCS5D01G159000 chr5D 100.000 1992 0 0 2978 4969 247074627 247076618 0.000000e+00 3679.0
2 TraesCS5D01G159000 chr5D 95.785 261 10 1 566 825 15954174 15953914 2.140000e-113 420.0
3 TraesCS5D01G159000 chr5B 97.075 2017 34 6 2978 4969 281579935 281577919 0.000000e+00 3374.0
4 TraesCS5D01G159000 chr5B 94.875 1834 68 7 876 2693 281581779 281579956 0.000000e+00 2843.0
5 TraesCS5D01G159000 chr5B 94.533 567 12 9 1 566 281582357 281581809 0.000000e+00 857.0
6 TraesCS5D01G159000 chr5B 84.746 118 8 4 708 825 655472830 655472723 5.260000e-20 110.0
7 TraesCS5D01G159000 chr5A 95.387 2016 42 17 2980 4969 331114851 331116841 0.000000e+00 3160.0
8 TraesCS5D01G159000 chr5A 94.746 1808 64 10 876 2668 331112810 331114601 0.000000e+00 2784.0
9 TraesCS5D01G159000 chr5A 95.478 575 14 5 1 566 331112209 331112780 0.000000e+00 907.0
10 TraesCS5D01G159000 chr5A 86.364 132 15 3 687 817 560609196 560609067 1.860000e-29 141.0
11 TraesCS5D01G159000 chr3A 90.418 981 69 9 3045 4019 95945629 95944668 0.000000e+00 1267.0
12 TraesCS5D01G159000 chr3A 84.819 1021 120 20 1003 1990 95948627 95947609 0.000000e+00 994.0
13 TraesCS5D01G159000 chr3A 79.200 250 39 12 565 813 59427989 59427752 1.430000e-35 161.0
14 TraesCS5D01G159000 chr3B 90.134 973 74 7 3050 4019 127856285 127855332 0.000000e+00 1245.0
15 TraesCS5D01G159000 chr3B 85.371 1039 112 22 991 1990 127862519 127861482 0.000000e+00 1040.0
16 TraesCS5D01G159000 chr3B 81.818 264 34 11 564 825 58625928 58625677 5.040000e-50 209.0
17 TraesCS5D01G159000 chr3D 89.490 980 79 8 3045 4019 81693280 81692320 0.000000e+00 1218.0
18 TraesCS5D01G159000 chr3D 85.559 1011 113 17 1003 1982 81696319 81695311 0.000000e+00 1027.0
19 TraesCS5D01G159000 chr3D 98.106 264 4 1 563 825 140412160 140412423 4.530000e-125 459.0
20 TraesCS5D01G159000 chr3D 95.413 109 4 1 2686 2794 159620645 159620538 6.610000e-39 172.0
21 TraesCS5D01G159000 chr3D 96.190 105 4 0 2690 2794 433565992 433566096 6.610000e-39 172.0
22 TraesCS5D01G159000 chr7D 98.106 264 4 1 563 825 69485156 69484893 4.530000e-125 459.0
23 TraesCS5D01G159000 chr7D 96.198 263 8 2 565 825 104740002 104739740 3.550000e-116 429.0
24 TraesCS5D01G159000 chr7D 95.489 266 10 2 562 825 41507189 41506924 1.650000e-114 424.0
25 TraesCS5D01G159000 chr7D 97.143 35 0 1 817 851 41506916 41506883 1.930000e-04 58.4
26 TraesCS5D01G159000 chr4D 97.727 264 4 2 563 825 508228661 508228399 2.110000e-123 453.0
27 TraesCS5D01G159000 chr4D 96.935 261 7 1 566 825 368500879 368500619 2.120000e-118 436.0
28 TraesCS5D01G159000 chr6D 96.578 263 7 2 565 825 461518997 461518735 7.640000e-118 435.0
29 TraesCS5D01G159000 chr1D 95.849 265 9 2 563 825 113862409 113862673 1.280000e-115 427.0
30 TraesCS5D01G159000 chr2B 81.369 263 37 9 564 825 549382994 549383245 2.350000e-48 204.0
31 TraesCS5D01G159000 chr2B 86.822 129 8 4 704 823 568822726 568822598 8.680000e-28 135.0
32 TraesCS5D01G159000 chr7B 81.061 264 35 11 564 825 652987659 652987909 3.920000e-46 196.0
33 TraesCS5D01G159000 chr2D 96.154 104 4 0 2691 2794 516440244 516440347 2.380000e-38 171.0
34 TraesCS5D01G159000 chr1A 96.154 104 4 0 2691 2794 22631681 22631578 2.380000e-38 171.0
35 TraesCS5D01G159000 chr4A 95.327 107 4 1 2688 2794 636654289 636654184 8.550000e-38 169.0
36 TraesCS5D01G159000 chr4A 92.920 113 8 0 2682 2794 594217858 594217970 1.110000e-36 165.0
37 TraesCS5D01G159000 chr4A 91.667 120 6 4 2677 2794 537434293 537434410 3.980000e-36 163.0
38 TraesCS5D01G159000 chr4A 89.922 129 9 4 2666 2794 628491139 628491015 3.980000e-36 163.0
39 TraesCS5D01G159000 chr2A 95.283 106 5 0 2689 2794 63693675 63693570 8.550000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G159000 chr5D 247071650 247076618 4968 False 4419.500000 5160 100.000000 1 4969 2 chr5D.!!$F1 4968
1 TraesCS5D01G159000 chr5B 281577919 281582357 4438 True 2358.000000 3374 95.494333 1 4969 3 chr5B.!!$R2 4968
2 TraesCS5D01G159000 chr5A 331112209 331116841 4632 False 2283.666667 3160 95.203667 1 4969 3 chr5A.!!$F1 4968
3 TraesCS5D01G159000 chr3A 95944668 95948627 3959 True 1130.500000 1267 87.618500 1003 4019 2 chr3A.!!$R2 3016
4 TraesCS5D01G159000 chr3B 127855332 127856285 953 True 1245.000000 1245 90.134000 3050 4019 1 chr3B.!!$R2 969
5 TraesCS5D01G159000 chr3B 127861482 127862519 1037 True 1040.000000 1040 85.371000 991 1990 1 chr3B.!!$R3 999
6 TraesCS5D01G159000 chr3D 81692320 81696319 3999 True 1122.500000 1218 87.524500 1003 4019 2 chr3D.!!$R2 3016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 648 0.115745 TCCCGAGTCCCTACCTGTTT 59.884 55.000 0.0 0.0 0.00 2.83 F
638 649 0.249398 CCCGAGTCCCTACCTGTTTG 59.751 60.000 0.0 0.0 0.00 2.93 F
839 850 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.0 0.0 42.06 4.34 F
2721 3316 1.001068 TGTCCCAAATTACTCGTCGCA 59.999 47.619 0.0 0.0 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2396 2895 1.227823 CGGAGGTTGCTGGTGTTCA 60.228 57.895 0.00 0.0 0.00 3.18 R
2572 3167 4.924305 CCAATGATGGGGATTAGTTGTG 57.076 45.455 0.00 0.0 43.51 3.33 R
2770 3365 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.0 35.93 5.19 R
4580 5721 0.532573 TGGAGCTCATCTGTTCGGTC 59.467 55.000 17.19 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
413 414 3.015327 GGCTGAAGCATCACAAGAGAAT 58.985 45.455 4.43 0.00 44.36 2.40
574 585 4.778143 CCGCGCTTAGGCCCTGTT 62.778 66.667 5.56 0.00 34.44 3.16
575 586 2.746277 CGCGCTTAGGCCCTGTTT 60.746 61.111 5.56 0.00 34.44 2.83
576 587 2.877691 GCGCTTAGGCCCTGTTTG 59.122 61.111 0.00 0.00 34.44 2.93
577 588 1.971695 GCGCTTAGGCCCTGTTTGT 60.972 57.895 0.00 0.00 34.44 2.83
578 589 1.524008 GCGCTTAGGCCCTGTTTGTT 61.524 55.000 0.00 0.00 34.44 2.83
579 590 0.958822 CGCTTAGGCCCTGTTTGTTT 59.041 50.000 0.00 0.00 34.44 2.83
580 591 1.068541 CGCTTAGGCCCTGTTTGTTTC 60.069 52.381 0.00 0.00 34.44 2.78
581 592 1.960689 GCTTAGGCCCTGTTTGTTTCA 59.039 47.619 0.00 0.00 0.00 2.69
582 593 2.562738 GCTTAGGCCCTGTTTGTTTCAT 59.437 45.455 0.00 0.00 0.00 2.57
583 594 3.761752 GCTTAGGCCCTGTTTGTTTCATA 59.238 43.478 0.00 0.00 0.00 2.15
584 595 4.219725 GCTTAGGCCCTGTTTGTTTCATAA 59.780 41.667 0.00 0.00 0.00 1.90
585 596 5.622233 GCTTAGGCCCTGTTTGTTTCATAAG 60.622 44.000 0.00 0.00 0.00 1.73
586 597 3.844640 AGGCCCTGTTTGTTTCATAAGT 58.155 40.909 0.00 0.00 0.00 2.24
587 598 3.826729 AGGCCCTGTTTGTTTCATAAGTC 59.173 43.478 0.00 0.00 0.00 3.01
588 599 3.056821 GGCCCTGTTTGTTTCATAAGTCC 60.057 47.826 0.00 0.00 0.00 3.85
589 600 3.826729 GCCCTGTTTGTTTCATAAGTCCT 59.173 43.478 0.00 0.00 0.00 3.85
590 601 5.007682 GCCCTGTTTGTTTCATAAGTCCTA 58.992 41.667 0.00 0.00 0.00 2.94
591 602 5.123979 GCCCTGTTTGTTTCATAAGTCCTAG 59.876 44.000 0.00 0.00 0.00 3.02
592 603 5.648092 CCCTGTTTGTTTCATAAGTCCTAGG 59.352 44.000 0.82 0.82 0.00 3.02
593 604 6.472887 CCTGTTTGTTTCATAAGTCCTAGGA 58.527 40.000 7.62 7.62 0.00 2.94
594 605 6.371825 CCTGTTTGTTTCATAAGTCCTAGGAC 59.628 42.308 31.29 31.29 44.86 3.85
621 632 8.640063 TTTTTAAGTCCCAACTTATAAGTCCC 57.360 34.615 18.28 5.45 45.16 4.46
622 633 4.482952 AAGTCCCAACTTATAAGTCCCG 57.517 45.455 18.28 9.98 43.98 5.14
623 634 3.716431 AGTCCCAACTTATAAGTCCCGA 58.284 45.455 18.28 10.65 38.57 5.14
624 635 3.705072 AGTCCCAACTTATAAGTCCCGAG 59.295 47.826 18.28 6.66 38.57 4.63
625 636 3.450096 GTCCCAACTTATAAGTCCCGAGT 59.550 47.826 18.28 0.00 38.57 4.18
626 637 3.703052 TCCCAACTTATAAGTCCCGAGTC 59.297 47.826 18.28 0.00 38.57 3.36
627 638 3.181468 CCCAACTTATAAGTCCCGAGTCC 60.181 52.174 18.28 0.00 38.57 3.85
628 639 3.181468 CCAACTTATAAGTCCCGAGTCCC 60.181 52.174 18.28 0.00 38.57 4.46
629 640 3.684408 ACTTATAAGTCCCGAGTCCCT 57.316 47.619 12.50 0.00 32.86 4.20
630 641 4.803329 ACTTATAAGTCCCGAGTCCCTA 57.197 45.455 12.50 0.00 32.86 3.53
631 642 4.468713 ACTTATAAGTCCCGAGTCCCTAC 58.531 47.826 12.50 0.00 32.86 3.18
632 643 2.378378 ATAAGTCCCGAGTCCCTACC 57.622 55.000 0.00 0.00 0.00 3.18
633 644 1.302907 TAAGTCCCGAGTCCCTACCT 58.697 55.000 0.00 0.00 0.00 3.08
634 645 0.324460 AAGTCCCGAGTCCCTACCTG 60.324 60.000 0.00 0.00 0.00 4.00
635 646 1.000107 GTCCCGAGTCCCTACCTGT 60.000 63.158 0.00 0.00 0.00 4.00
636 647 0.614134 GTCCCGAGTCCCTACCTGTT 60.614 60.000 0.00 0.00 0.00 3.16
637 648 0.115745 TCCCGAGTCCCTACCTGTTT 59.884 55.000 0.00 0.00 0.00 2.83
638 649 0.249398 CCCGAGTCCCTACCTGTTTG 59.751 60.000 0.00 0.00 0.00 2.93
639 650 0.974383 CCGAGTCCCTACCTGTTTGT 59.026 55.000 0.00 0.00 0.00 2.83
640 651 1.346722 CCGAGTCCCTACCTGTTTGTT 59.653 52.381 0.00 0.00 0.00 2.83
641 652 2.224450 CCGAGTCCCTACCTGTTTGTTT 60.224 50.000 0.00 0.00 0.00 2.83
642 653 3.007182 CCGAGTCCCTACCTGTTTGTTTA 59.993 47.826 0.00 0.00 0.00 2.01
643 654 3.992427 CGAGTCCCTACCTGTTTGTTTAC 59.008 47.826 0.00 0.00 0.00 2.01
644 655 4.501915 CGAGTCCCTACCTGTTTGTTTACA 60.502 45.833 0.00 0.00 0.00 2.41
645 656 4.969484 AGTCCCTACCTGTTTGTTTACAG 58.031 43.478 0.00 0.00 44.07 2.74
657 668 8.915871 CTGTTTGTTTACAGGATTTATCATGG 57.084 34.615 8.96 0.00 42.42 3.66
658 669 7.835822 TGTTTGTTTACAGGATTTATCATGGG 58.164 34.615 8.96 0.00 42.42 4.00
659 670 6.463995 TTGTTTACAGGATTTATCATGGGC 57.536 37.500 8.96 0.00 42.42 5.36
660 671 5.765510 TGTTTACAGGATTTATCATGGGCT 58.234 37.500 8.96 0.00 42.42 5.19
661 672 6.905736 TGTTTACAGGATTTATCATGGGCTA 58.094 36.000 8.96 0.00 42.42 3.93
662 673 6.998074 TGTTTACAGGATTTATCATGGGCTAG 59.002 38.462 8.96 0.00 42.42 3.42
663 674 7.147391 TGTTTACAGGATTTATCATGGGCTAGA 60.147 37.037 8.96 0.00 42.42 2.43
664 675 5.495926 ACAGGATTTATCATGGGCTAGAG 57.504 43.478 8.96 0.00 42.42 2.43
665 676 4.288105 ACAGGATTTATCATGGGCTAGAGG 59.712 45.833 8.96 0.00 42.42 3.69
666 677 4.288105 CAGGATTTATCATGGGCTAGAGGT 59.712 45.833 0.00 0.00 35.15 3.85
667 678 4.916424 AGGATTTATCATGGGCTAGAGGTT 59.084 41.667 0.00 0.00 0.00 3.50
668 679 6.013379 CAGGATTTATCATGGGCTAGAGGTTA 60.013 42.308 0.00 0.00 35.15 2.85
669 680 6.737608 AGGATTTATCATGGGCTAGAGGTTAT 59.262 38.462 0.00 0.00 0.00 1.89
670 681 7.240616 AGGATTTATCATGGGCTAGAGGTTATT 59.759 37.037 0.00 0.00 0.00 1.40
671 682 8.548877 GGATTTATCATGGGCTAGAGGTTATTA 58.451 37.037 0.00 0.00 0.00 0.98
672 683 9.959721 GATTTATCATGGGCTAGAGGTTATTAA 57.040 33.333 0.00 0.00 0.00 1.40
675 686 9.739276 TTATCATGGGCTAGAGGTTATTAAATG 57.261 33.333 0.00 0.00 0.00 2.32
676 687 7.387265 TCATGGGCTAGAGGTTATTAAATGA 57.613 36.000 0.00 0.00 0.00 2.57
677 688 7.224297 TCATGGGCTAGAGGTTATTAAATGAC 58.776 38.462 0.00 0.00 0.00 3.06
678 689 6.569127 TGGGCTAGAGGTTATTAAATGACA 57.431 37.500 0.00 0.00 0.00 3.58
679 690 7.149202 TGGGCTAGAGGTTATTAAATGACAT 57.851 36.000 0.00 0.00 0.00 3.06
680 691 6.998074 TGGGCTAGAGGTTATTAAATGACATG 59.002 38.462 0.00 0.00 0.00 3.21
681 692 6.072452 GGGCTAGAGGTTATTAAATGACATGC 60.072 42.308 0.00 0.00 0.00 4.06
682 693 6.712547 GGCTAGAGGTTATTAAATGACATGCT 59.287 38.462 0.00 0.00 0.00 3.79
683 694 7.878127 GGCTAGAGGTTATTAAATGACATGCTA 59.122 37.037 0.00 0.00 0.00 3.49
684 695 9.273016 GCTAGAGGTTATTAAATGACATGCTAA 57.727 33.333 0.00 0.00 0.00 3.09
690 701 9.516314 GGTTATTAAATGACATGCTAAAAGACC 57.484 33.333 0.00 0.00 0.00 3.85
691 702 9.516314 GTTATTAAATGACATGCTAAAAGACCC 57.484 33.333 0.00 0.00 0.00 4.46
692 703 7.716799 ATTAAATGACATGCTAAAAGACCCA 57.283 32.000 0.00 0.00 0.00 4.51
693 704 7.531857 TTAAATGACATGCTAAAAGACCCAA 57.468 32.000 0.00 0.00 0.00 4.12
694 705 6.418057 AAATGACATGCTAAAAGACCCAAA 57.582 33.333 0.00 0.00 0.00 3.28
695 706 6.610075 AATGACATGCTAAAAGACCCAAAT 57.390 33.333 0.00 0.00 0.00 2.32
696 707 5.643379 TGACATGCTAAAAGACCCAAATC 57.357 39.130 0.00 0.00 0.00 2.17
697 708 5.076182 TGACATGCTAAAAGACCCAAATCA 58.924 37.500 0.00 0.00 0.00 2.57
698 709 5.048083 TGACATGCTAAAAGACCCAAATCAC 60.048 40.000 0.00 0.00 0.00 3.06
699 710 4.220602 ACATGCTAAAAGACCCAAATCACC 59.779 41.667 0.00 0.00 0.00 4.02
700 711 3.838565 TGCTAAAAGACCCAAATCACCA 58.161 40.909 0.00 0.00 0.00 4.17
701 712 3.572255 TGCTAAAAGACCCAAATCACCAC 59.428 43.478 0.00 0.00 0.00 4.16
702 713 3.826729 GCTAAAAGACCCAAATCACCACT 59.173 43.478 0.00 0.00 0.00 4.00
703 714 5.007682 GCTAAAAGACCCAAATCACCACTA 58.992 41.667 0.00 0.00 0.00 2.74
704 715 5.652452 GCTAAAAGACCCAAATCACCACTAT 59.348 40.000 0.00 0.00 0.00 2.12
705 716 6.826741 GCTAAAAGACCCAAATCACCACTATA 59.173 38.462 0.00 0.00 0.00 1.31
706 717 7.338449 GCTAAAAGACCCAAATCACCACTATAA 59.662 37.037 0.00 0.00 0.00 0.98
707 718 9.408648 CTAAAAGACCCAAATCACCACTATAAT 57.591 33.333 0.00 0.00 0.00 1.28
708 719 7.881775 AAAGACCCAAATCACCACTATAATC 57.118 36.000 0.00 0.00 0.00 1.75
709 720 5.941788 AGACCCAAATCACCACTATAATCC 58.058 41.667 0.00 0.00 0.00 3.01
710 721 5.061721 ACCCAAATCACCACTATAATCCC 57.938 43.478 0.00 0.00 0.00 3.85
711 722 4.731929 ACCCAAATCACCACTATAATCCCT 59.268 41.667 0.00 0.00 0.00 4.20
712 723 5.914716 ACCCAAATCACCACTATAATCCCTA 59.085 40.000 0.00 0.00 0.00 3.53
713 724 6.566480 ACCCAAATCACCACTATAATCCCTAT 59.434 38.462 0.00 0.00 0.00 2.57
714 725 7.742213 ACCCAAATCACCACTATAATCCCTATA 59.258 37.037 0.00 0.00 0.00 1.31
715 726 8.611257 CCCAAATCACCACTATAATCCCTATAA 58.389 37.037 0.00 0.00 0.00 0.98
716 727 9.672673 CCAAATCACCACTATAATCCCTATAAG 57.327 37.037 0.00 0.00 0.00 1.73
720 731 8.431910 TCACCACTATAATCCCTATAAGTTCC 57.568 38.462 0.00 0.00 0.00 3.62
721 732 8.239478 TCACCACTATAATCCCTATAAGTTCCT 58.761 37.037 0.00 0.00 0.00 3.36
722 733 8.532819 CACCACTATAATCCCTATAAGTTCCTC 58.467 40.741 0.00 0.00 0.00 3.71
723 734 7.679025 ACCACTATAATCCCTATAAGTTCCTCC 59.321 40.741 0.00 0.00 0.00 4.30
724 735 7.125963 CCACTATAATCCCTATAAGTTCCTCCC 59.874 44.444 0.00 0.00 0.00 4.30
725 736 7.901861 CACTATAATCCCTATAAGTTCCTCCCT 59.098 40.741 0.00 0.00 0.00 4.20
726 737 7.901861 ACTATAATCCCTATAAGTTCCTCCCTG 59.098 40.741 0.00 0.00 0.00 4.45
727 738 4.852991 ATCCCTATAAGTTCCTCCCTGA 57.147 45.455 0.00 0.00 0.00 3.86
728 739 4.200447 TCCCTATAAGTTCCTCCCTGAG 57.800 50.000 0.00 0.00 0.00 3.35
729 740 3.797845 TCCCTATAAGTTCCTCCCTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
730 741 4.140900 TCCCTATAAGTTCCTCCCTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
731 742 4.388118 CCCTATAAGTTCCTCCCTGAGAGT 60.388 50.000 0.00 0.00 41.47 3.24
732 743 4.830600 CCTATAAGTTCCTCCCTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
733 744 4.618378 ATAAGTTCCTCCCTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
734 745 3.268034 AAGTTCCTCCCTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
735 746 3.268034 AGTTCCTCCCTGAGAGTCTTT 57.732 47.619 0.00 0.00 41.47 2.52
736 747 3.592865 AGTTCCTCCCTGAGAGTCTTTT 58.407 45.455 0.00 0.00 41.47 2.27
737 748 3.977326 AGTTCCTCCCTGAGAGTCTTTTT 59.023 43.478 0.00 0.00 41.47 1.94
756 767 5.467035 TTTTTGATGAGTCCCAAATCACC 57.533 39.130 8.14 0.00 33.00 4.02
757 768 3.805066 TTGATGAGTCCCAAATCACCA 57.195 42.857 0.00 0.00 30.26 4.17
758 769 3.071874 TGATGAGTCCCAAATCACCAC 57.928 47.619 0.00 0.00 0.00 4.16
759 770 2.644299 TGATGAGTCCCAAATCACCACT 59.356 45.455 0.00 0.00 0.00 4.00
760 771 3.074390 TGATGAGTCCCAAATCACCACTT 59.926 43.478 0.00 0.00 0.00 3.16
761 772 3.593442 TGAGTCCCAAATCACCACTTT 57.407 42.857 0.00 0.00 0.00 2.66
762 773 4.715534 TGAGTCCCAAATCACCACTTTA 57.284 40.909 0.00 0.00 0.00 1.85
763 774 5.055265 TGAGTCCCAAATCACCACTTTAA 57.945 39.130 0.00 0.00 0.00 1.52
764 775 5.070001 TGAGTCCCAAATCACCACTTTAAG 58.930 41.667 0.00 0.00 0.00 1.85
765 776 5.061721 AGTCCCAAATCACCACTTTAAGT 57.938 39.130 0.00 0.00 0.00 2.24
766 777 5.070685 AGTCCCAAATCACCACTTTAAGTC 58.929 41.667 0.00 0.00 0.00 3.01
767 778 4.217767 GTCCCAAATCACCACTTTAAGTCC 59.782 45.833 0.00 0.00 0.00 3.85
768 779 3.509967 CCCAAATCACCACTTTAAGTCCC 59.490 47.826 0.00 0.00 0.00 4.46
769 780 4.407365 CCAAATCACCACTTTAAGTCCCT 58.593 43.478 0.00 0.00 0.00 4.20
770 781 5.515886 CCCAAATCACCACTTTAAGTCCCTA 60.516 44.000 0.00 0.00 0.00 3.53
771 782 6.187682 CCAAATCACCACTTTAAGTCCCTAT 58.812 40.000 0.00 0.00 0.00 2.57
772 783 7.343357 CCAAATCACCACTTTAAGTCCCTATA 58.657 38.462 0.00 0.00 0.00 1.31
773 784 7.832187 CCAAATCACCACTTTAAGTCCCTATAA 59.168 37.037 0.00 0.00 0.00 0.98
774 785 8.893727 CAAATCACCACTTTAAGTCCCTATAAG 58.106 37.037 0.00 0.00 0.00 1.73
775 786 7.750947 ATCACCACTTTAAGTCCCTATAAGT 57.249 36.000 0.00 0.00 0.00 2.24
776 787 7.179076 TCACCACTTTAAGTCCCTATAAGTC 57.821 40.000 0.00 0.00 0.00 3.01
777 788 6.155737 TCACCACTTTAAGTCCCTATAAGTCC 59.844 42.308 0.00 0.00 0.00 3.85
778 789 5.427806 ACCACTTTAAGTCCCTATAAGTCCC 59.572 44.000 0.00 0.00 0.00 4.46
779 790 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
780 791 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
781 792 5.904169 ACTTTAAGTCCCTATAAGTCCCTCC 59.096 44.000 0.00 0.00 0.00 4.30
782 793 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
783 794 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
784 795 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
785 796 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
786 797 4.038633 GTCCCTATAAGTCCCTCCTGTTT 58.961 47.826 0.00 0.00 0.00 2.83
787 798 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
788 799 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
789 800 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
790 801 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
791 802 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
792 803 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
793 804 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
794 805 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
795 806 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
796 807 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
797 808 3.010138 TCCCTCCTGTTTGGTTTAGATGG 59.990 47.826 0.00 0.00 37.07 3.51
798 809 3.356290 CCTCCTGTTTGGTTTAGATGGG 58.644 50.000 0.00 0.00 37.07 4.00
799 810 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
800 811 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
801 812 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
802 813 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
803 814 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
804 815 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
805 816 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
806 817 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
807 818 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
808 819 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
809 820 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
810 821 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
811 822 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
812 823 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
813 824 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
814 825 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
815 826 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
835 846 6.607004 TTTTTAAGTCCCTGGAAACAAACA 57.393 33.333 0.00 0.00 42.06 2.83
836 847 5.585820 TTTAAGTCCCTGGAAACAAACAC 57.414 39.130 0.00 0.00 42.06 3.32
837 848 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
838 849 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
839 850 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
840 851 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
841 852 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
842 853 2.666317 CCTGGAAACAAACACCCTCTT 58.334 47.619 0.00 0.00 42.06 2.85
843 854 3.435890 CCCTGGAAACAAACACCCTCTTA 60.436 47.826 0.00 0.00 42.06 2.10
858 869 2.043227 CTCTTAATCTCTTCGGGGCCT 58.957 52.381 0.84 0.00 0.00 5.19
863 874 2.262774 ATCTCTTCGGGGCCTGCAAG 62.263 60.000 7.74 12.26 0.00 4.01
927 938 3.849951 CCAGGGTCGGACCGGATG 61.850 72.222 20.35 17.31 39.83 3.51
939 950 3.918591 CGGACCGGATGTAATCGATTTAG 59.081 47.826 17.19 2.11 46.86 1.85
985 996 1.106944 CACGAAAAACCCCACCTGCT 61.107 55.000 0.00 0.00 0.00 4.24
1032 1049 1.315690 CCGCTGCCAAATCAGATGAT 58.684 50.000 0.00 0.00 36.19 2.45
1167 1217 1.599797 CCCACCGACCAACAACTCC 60.600 63.158 0.00 0.00 0.00 3.85
1168 1218 1.959226 CCACCGACCAACAACTCCG 60.959 63.158 0.00 0.00 0.00 4.63
1169 1219 2.280592 ACCGACCAACAACTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
1170 1220 3.047877 CCGACCAACAACTCCGCC 61.048 66.667 0.00 0.00 0.00 6.13
1171 1221 3.047877 CGACCAACAACTCCGCCC 61.048 66.667 0.00 0.00 0.00 6.13
1172 1222 2.671963 GACCAACAACTCCGCCCC 60.672 66.667 0.00 0.00 0.00 5.80
1347 1397 1.279271 GCCAAGGACATCACCTACACT 59.721 52.381 0.00 0.00 39.62 3.55
1774 1824 8.184848 CGTATGATGTTATCGATATGTTCCTCT 58.815 37.037 5.84 0.00 0.00 3.69
1791 1841 3.011517 TCTCCCCTCAAGCAGGCC 61.012 66.667 0.00 0.00 41.80 5.19
2001 2055 6.252599 TCATATCTTGACCATAGCCTTGTT 57.747 37.500 0.00 0.00 0.00 2.83
2003 2057 6.543465 TCATATCTTGACCATAGCCTTGTTTG 59.457 38.462 0.00 0.00 0.00 2.93
2179 2671 4.808558 TCTAAAAACTTAAGAGCGCGGTA 58.191 39.130 12.41 0.00 0.00 4.02
2372 2871 4.782019 TGCCAAAGTTTACAATAGGCAG 57.218 40.909 10.20 0.00 44.89 4.85
2396 2895 4.353788 TGTTATATTGCAGGCCCTCCTATT 59.646 41.667 0.00 0.00 41.93 1.73
2409 2908 2.749621 CCTCCTATTGAACACCAGCAAC 59.250 50.000 0.00 0.00 0.00 4.17
2410 2909 2.749621 CTCCTATTGAACACCAGCAACC 59.250 50.000 0.00 0.00 0.00 3.77
2491 3051 7.604164 AGATGAGATAACGACAATTTCAGTGTT 59.396 33.333 0.00 0.00 0.00 3.32
2518 3085 7.534085 TCTTAGTTAATGCCAACGATTACAG 57.466 36.000 0.00 0.00 33.50 2.74
2684 3279 1.339438 CCACTGCTGCAGTACCAAGAT 60.339 52.381 32.51 7.14 43.43 2.40
2707 3302 9.480362 AGATATATATATACTCCCTCTGTCCCA 57.520 37.037 5.19 0.00 0.00 4.37
2711 3306 9.805204 ATATATATACTCCCTCTGTCCCAAATT 57.195 33.333 0.00 0.00 0.00 1.82
2713 3308 5.632034 ATACTCCCTCTGTCCCAAATTAC 57.368 43.478 0.00 0.00 0.00 1.89
2715 3310 3.519913 ACTCCCTCTGTCCCAAATTACTC 59.480 47.826 0.00 0.00 0.00 2.59
2716 3311 2.500098 TCCCTCTGTCCCAAATTACTCG 59.500 50.000 0.00 0.00 0.00 4.18
2718 3313 3.522553 CCTCTGTCCCAAATTACTCGTC 58.477 50.000 0.00 0.00 0.00 4.20
2719 3314 3.179830 CTCTGTCCCAAATTACTCGTCG 58.820 50.000 0.00 0.00 0.00 5.12
2720 3315 1.659098 CTGTCCCAAATTACTCGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
2721 3316 1.001068 TGTCCCAAATTACTCGTCGCA 59.999 47.619 0.00 0.00 0.00 5.10
2723 3318 1.546923 TCCCAAATTACTCGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
2725 3320 2.739913 CCCAAATTACTCGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
2726 3321 3.374058 CCCAAATTACTCGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
2727 3322 4.334443 CCAAATTACTCGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
2728 3323 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
2729 3324 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2731 3326 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2732 3327 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2733 3328 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2734 3329 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2735 3330 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2736 3331 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2737 3332 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2739 3334 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
2740 3335 6.019075 CGTCGCAGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 39.69 1.52
2743 3338 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
2744 3339 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
2774 3369 2.150397 GGTACATCCATACCTGCGAC 57.850 55.000 0.00 0.00 41.38 5.19
2775 3370 1.411246 GGTACATCCATACCTGCGACA 59.589 52.381 0.00 0.00 41.38 4.35
2777 3372 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2778 3373 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2781 3376 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2782 3377 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2783 3378 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2784 3379 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
2785 3380 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
2786 3381 1.006832 CCTGCGACAAGTAATTCGGG 58.993 55.000 0.00 0.00 35.73 5.14
2787 3382 1.404986 CCTGCGACAAGTAATTCGGGA 60.405 52.381 0.00 0.00 35.73 5.14
2788 3383 1.659098 CTGCGACAAGTAATTCGGGAC 59.341 52.381 0.00 0.00 35.73 4.46
3023 4131 6.360370 AAATGCAAGTAGAACCTCTCAGTA 57.640 37.500 0.00 0.00 0.00 2.74
3030 4140 7.540299 CAAGTAGAACCTCTCAGTACCTTTAG 58.460 42.308 0.00 0.00 0.00 1.85
3041 4151 3.123621 CAGTACCTTTAGAAAGCAGTGCG 59.876 47.826 10.00 0.00 34.69 5.34
3067 4177 9.196552 GTGCAGTTTTCAAATTTCTTAATAGCT 57.803 29.630 0.00 0.00 0.00 3.32
3281 4392 3.066621 TGAAGCCAGTTGTTGTCAATGTC 59.933 43.478 0.00 0.00 35.92 3.06
3908 5019 3.695606 GAGCACCAGAGGTCCGCA 61.696 66.667 0.00 0.00 31.02 5.69
4020 5135 4.852134 TCAAGAGCTAAAATGCTGCAAA 57.148 36.364 6.36 0.00 44.17 3.68
4282 5414 1.990160 TATTTGGTAGCCGGGCCCAG 61.990 60.000 24.92 12.86 0.00 4.45
4526 5659 2.035066 AGTGTGAAATTGACTTGCCAGC 59.965 45.455 0.00 0.00 0.00 4.85
4547 5680 3.494048 GCTGCCATGCTCACTATAAGAGT 60.494 47.826 0.00 0.00 39.82 3.24
4580 5721 1.538512 CAGTTTGTGGGTCATGAGCAG 59.461 52.381 25.18 2.14 0.00 4.24
4690 5831 1.549170 AGAACGCGACTGGGACTTAAT 59.451 47.619 15.93 0.00 0.00 1.40
4772 5913 5.600908 GCAATGAAGATTGTTGCATTGTT 57.399 34.783 13.75 0.00 45.63 2.83
4798 5939 7.606456 TGTAAAATTGCTCTAGGACCTAAACAG 59.394 37.037 2.08 0.49 0.00 3.16
4954 6095 0.107508 CATTCAGCCAGTCCGACCAT 60.108 55.000 0.00 0.00 0.00 3.55
4960 6101 1.349688 AGCCAGTCCGACCATGTTTTA 59.650 47.619 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
487 497 3.806316 ATCTTTCGTTTGTGCTAACCG 57.194 42.857 0.00 0.00 0.00 4.44
528 539 2.031157 CCAGACCCAAAATTGTCACGTC 60.031 50.000 0.00 0.00 33.89 4.34
531 542 2.035832 CCACCAGACCCAAAATTGTCAC 59.964 50.000 0.00 0.00 33.89 3.67
537 548 0.178935 CCCACCACCAGACCCAAAAT 60.179 55.000 0.00 0.00 0.00 1.82
539 550 2.931107 CCCACCACCAGACCCAAA 59.069 61.111 0.00 0.00 0.00 3.28
566 577 3.056821 GGACTTATGAAACAAACAGGGCC 60.057 47.826 0.00 0.00 0.00 5.80
567 578 3.826729 AGGACTTATGAAACAAACAGGGC 59.173 43.478 0.00 0.00 0.00 5.19
568 579 5.648092 CCTAGGACTTATGAAACAAACAGGG 59.352 44.000 1.05 0.00 0.00 4.45
569 580 6.371825 GTCCTAGGACTTATGAAACAAACAGG 59.628 42.308 31.12 0.00 41.57 4.00
570 581 7.365840 GTCCTAGGACTTATGAAACAAACAG 57.634 40.000 31.12 0.00 41.57 3.16
602 613 3.705072 CTCGGGACTTATAAGTTGGGACT 59.295 47.826 18.96 0.00 39.88 3.85
603 614 3.450096 ACTCGGGACTTATAAGTTGGGAC 59.550 47.826 18.96 6.19 39.88 4.46
604 615 3.703052 GACTCGGGACTTATAAGTTGGGA 59.297 47.826 18.96 14.13 39.88 4.37
605 616 3.181468 GGACTCGGGACTTATAAGTTGGG 60.181 52.174 18.96 13.91 39.88 4.12
606 617 3.181468 GGGACTCGGGACTTATAAGTTGG 60.181 52.174 18.96 11.31 39.88 3.77
607 618 3.705072 AGGGACTCGGGACTTATAAGTTG 59.295 47.826 18.96 12.12 39.88 3.16
608 619 3.991683 AGGGACTCGGGACTTATAAGTT 58.008 45.455 18.96 2.29 39.88 2.66
609 620 3.684408 AGGGACTCGGGACTTATAAGT 57.316 47.619 18.05 18.05 43.16 2.24
610 621 3.825585 GGTAGGGACTCGGGACTTATAAG 59.174 52.174 11.05 11.05 41.75 1.73
611 622 3.464833 AGGTAGGGACTCGGGACTTATAA 59.535 47.826 0.00 0.00 41.75 0.98
612 623 3.059097 AGGTAGGGACTCGGGACTTATA 58.941 50.000 0.00 0.00 41.75 0.98
613 624 1.858246 AGGTAGGGACTCGGGACTTAT 59.142 52.381 0.00 0.00 41.75 1.73
614 625 1.064166 CAGGTAGGGACTCGGGACTTA 60.064 57.143 0.00 0.00 41.75 2.24
615 626 0.324460 CAGGTAGGGACTCGGGACTT 60.324 60.000 0.00 0.00 41.75 3.01
616 627 1.306970 CAGGTAGGGACTCGGGACT 59.693 63.158 0.00 0.00 41.75 3.85
617 628 0.614134 AACAGGTAGGGACTCGGGAC 60.614 60.000 0.00 0.00 41.75 4.46
618 629 0.115745 AAACAGGTAGGGACTCGGGA 59.884 55.000 0.00 0.00 41.75 5.14
619 630 0.249398 CAAACAGGTAGGGACTCGGG 59.751 60.000 0.00 0.00 41.75 5.14
620 631 0.974383 ACAAACAGGTAGGGACTCGG 59.026 55.000 0.00 0.00 41.75 4.63
621 632 2.833631 AACAAACAGGTAGGGACTCG 57.166 50.000 0.00 0.00 41.75 4.18
622 633 4.964593 TGTAAACAAACAGGTAGGGACTC 58.035 43.478 0.00 0.00 41.75 3.36
623 634 4.969484 CTGTAAACAAACAGGTAGGGACT 58.031 43.478 0.00 0.00 42.63 3.85
632 643 7.975616 CCCATGATAAATCCTGTAAACAAACAG 59.024 37.037 0.00 0.00 45.33 3.16
633 644 7.578571 GCCCATGATAAATCCTGTAAACAAACA 60.579 37.037 0.00 0.00 0.00 2.83
634 645 6.756542 GCCCATGATAAATCCTGTAAACAAAC 59.243 38.462 0.00 0.00 0.00 2.93
635 646 6.667414 AGCCCATGATAAATCCTGTAAACAAA 59.333 34.615 0.00 0.00 0.00 2.83
636 647 6.194235 AGCCCATGATAAATCCTGTAAACAA 58.806 36.000 0.00 0.00 0.00 2.83
637 648 5.765510 AGCCCATGATAAATCCTGTAAACA 58.234 37.500 0.00 0.00 0.00 2.83
638 649 7.224297 TCTAGCCCATGATAAATCCTGTAAAC 58.776 38.462 0.00 0.00 0.00 2.01
639 650 7.387265 TCTAGCCCATGATAAATCCTGTAAA 57.613 36.000 0.00 0.00 0.00 2.01
640 651 6.013379 CCTCTAGCCCATGATAAATCCTGTAA 60.013 42.308 0.00 0.00 0.00 2.41
641 652 5.485353 CCTCTAGCCCATGATAAATCCTGTA 59.515 44.000 0.00 0.00 0.00 2.74
642 653 4.288105 CCTCTAGCCCATGATAAATCCTGT 59.712 45.833 0.00 0.00 0.00 4.00
643 654 4.288105 ACCTCTAGCCCATGATAAATCCTG 59.712 45.833 0.00 0.00 0.00 3.86
644 655 4.507342 ACCTCTAGCCCATGATAAATCCT 58.493 43.478 0.00 0.00 0.00 3.24
645 656 4.917906 ACCTCTAGCCCATGATAAATCC 57.082 45.455 0.00 0.00 0.00 3.01
646 657 9.959721 TTAATAACCTCTAGCCCATGATAAATC 57.040 33.333 0.00 0.00 0.00 2.17
649 660 9.739276 CATTTAATAACCTCTAGCCCATGATAA 57.261 33.333 0.00 0.00 0.00 1.75
650 661 9.111519 TCATTTAATAACCTCTAGCCCATGATA 57.888 33.333 0.00 0.00 0.00 2.15
651 662 7.885399 GTCATTTAATAACCTCTAGCCCATGAT 59.115 37.037 0.00 0.00 0.00 2.45
652 663 7.147391 TGTCATTTAATAACCTCTAGCCCATGA 60.147 37.037 0.00 0.00 0.00 3.07
653 664 6.998074 TGTCATTTAATAACCTCTAGCCCATG 59.002 38.462 0.00 0.00 0.00 3.66
654 665 7.149202 TGTCATTTAATAACCTCTAGCCCAT 57.851 36.000 0.00 0.00 0.00 4.00
655 666 6.569127 TGTCATTTAATAACCTCTAGCCCA 57.431 37.500 0.00 0.00 0.00 5.36
656 667 6.072452 GCATGTCATTTAATAACCTCTAGCCC 60.072 42.308 0.00 0.00 0.00 5.19
657 668 6.712547 AGCATGTCATTTAATAACCTCTAGCC 59.287 38.462 0.00 0.00 0.00 3.93
658 669 7.736447 AGCATGTCATTTAATAACCTCTAGC 57.264 36.000 0.00 0.00 0.00 3.42
664 675 9.516314 GGTCTTTTAGCATGTCATTTAATAACC 57.484 33.333 0.00 0.00 0.00 2.85
665 676 9.516314 GGGTCTTTTAGCATGTCATTTAATAAC 57.484 33.333 0.00 0.00 0.00 1.89
666 677 9.249053 TGGGTCTTTTAGCATGTCATTTAATAA 57.751 29.630 0.00 0.00 0.00 1.40
667 678 8.815565 TGGGTCTTTTAGCATGTCATTTAATA 57.184 30.769 0.00 0.00 0.00 0.98
668 679 7.716799 TGGGTCTTTTAGCATGTCATTTAAT 57.283 32.000 0.00 0.00 0.00 1.40
669 680 7.531857 TTGGGTCTTTTAGCATGTCATTTAA 57.468 32.000 0.00 0.00 0.00 1.52
670 681 7.531857 TTTGGGTCTTTTAGCATGTCATTTA 57.468 32.000 0.00 0.00 0.00 1.40
671 682 6.418057 TTTGGGTCTTTTAGCATGTCATTT 57.582 33.333 0.00 0.00 0.00 2.32
672 683 6.211184 TGATTTGGGTCTTTTAGCATGTCATT 59.789 34.615 0.00 0.00 0.00 2.57
673 684 5.716228 TGATTTGGGTCTTTTAGCATGTCAT 59.284 36.000 0.00 0.00 0.00 3.06
674 685 5.048083 GTGATTTGGGTCTTTTAGCATGTCA 60.048 40.000 0.00 0.00 0.00 3.58
675 686 5.402398 GTGATTTGGGTCTTTTAGCATGTC 58.598 41.667 0.00 0.00 0.00 3.06
676 687 4.220602 GGTGATTTGGGTCTTTTAGCATGT 59.779 41.667 0.00 0.00 0.00 3.21
677 688 4.220382 TGGTGATTTGGGTCTTTTAGCATG 59.780 41.667 0.00 0.00 0.00 4.06
678 689 4.220602 GTGGTGATTTGGGTCTTTTAGCAT 59.779 41.667 0.00 0.00 0.00 3.79
679 690 3.572255 GTGGTGATTTGGGTCTTTTAGCA 59.428 43.478 0.00 0.00 0.00 3.49
680 691 3.826729 AGTGGTGATTTGGGTCTTTTAGC 59.173 43.478 0.00 0.00 0.00 3.09
681 692 8.801882 TTATAGTGGTGATTTGGGTCTTTTAG 57.198 34.615 0.00 0.00 0.00 1.85
682 693 9.403583 GATTATAGTGGTGATTTGGGTCTTTTA 57.596 33.333 0.00 0.00 0.00 1.52
683 694 7.342026 GGATTATAGTGGTGATTTGGGTCTTTT 59.658 37.037 0.00 0.00 0.00 2.27
684 695 6.833933 GGATTATAGTGGTGATTTGGGTCTTT 59.166 38.462 0.00 0.00 0.00 2.52
685 696 6.365520 GGATTATAGTGGTGATTTGGGTCTT 58.634 40.000 0.00 0.00 0.00 3.01
686 697 5.163088 GGGATTATAGTGGTGATTTGGGTCT 60.163 44.000 0.00 0.00 0.00 3.85
687 698 5.070685 GGGATTATAGTGGTGATTTGGGTC 58.929 45.833 0.00 0.00 0.00 4.46
688 699 4.731929 AGGGATTATAGTGGTGATTTGGGT 59.268 41.667 0.00 0.00 0.00 4.51
689 700 5.324832 AGGGATTATAGTGGTGATTTGGG 57.675 43.478 0.00 0.00 0.00 4.12
690 701 9.672673 CTTATAGGGATTATAGTGGTGATTTGG 57.327 37.037 0.00 0.00 0.00 3.28
694 705 9.047947 GGAACTTATAGGGATTATAGTGGTGAT 57.952 37.037 0.00 0.00 0.00 3.06
695 706 8.239478 AGGAACTTATAGGGATTATAGTGGTGA 58.761 37.037 0.00 0.00 27.25 4.02
696 707 8.437274 AGGAACTTATAGGGATTATAGTGGTG 57.563 38.462 0.00 0.00 27.25 4.17
697 708 7.679025 GGAGGAACTTATAGGGATTATAGTGGT 59.321 40.741 0.00 0.00 41.55 4.16
698 709 7.125963 GGGAGGAACTTATAGGGATTATAGTGG 59.874 44.444 0.00 0.00 41.55 4.00
699 710 7.901861 AGGGAGGAACTTATAGGGATTATAGTG 59.098 40.741 0.00 0.00 41.55 2.74
700 711 7.901861 CAGGGAGGAACTTATAGGGATTATAGT 59.098 40.741 0.00 0.00 41.55 2.12
701 712 8.123130 TCAGGGAGGAACTTATAGGGATTATAG 58.877 40.741 0.00 0.00 41.55 1.31
702 713 8.019537 TCAGGGAGGAACTTATAGGGATTATA 57.980 38.462 0.00 0.00 41.55 0.98
703 714 6.886637 TCAGGGAGGAACTTATAGGGATTAT 58.113 40.000 0.00 0.00 41.55 1.28
704 715 6.105740 TCTCAGGGAGGAACTTATAGGGATTA 59.894 42.308 0.00 0.00 41.55 1.75
705 716 5.102609 TCTCAGGGAGGAACTTATAGGGATT 60.103 44.000 0.00 0.00 41.55 3.01
706 717 4.423960 TCTCAGGGAGGAACTTATAGGGAT 59.576 45.833 0.00 0.00 41.55 3.85
707 718 3.797845 TCTCAGGGAGGAACTTATAGGGA 59.202 47.826 0.00 0.00 41.55 4.20
708 719 4.156477 CTCTCAGGGAGGAACTTATAGGG 58.844 52.174 0.00 0.00 41.55 3.53
709 720 4.810345 ACTCTCAGGGAGGAACTTATAGG 58.190 47.826 1.29 0.00 45.83 2.57
710 721 5.701224 AGACTCTCAGGGAGGAACTTATAG 58.299 45.833 1.29 0.00 45.83 1.31
711 722 5.735733 AGACTCTCAGGGAGGAACTTATA 57.264 43.478 1.29 0.00 45.83 0.98
712 723 4.618378 AGACTCTCAGGGAGGAACTTAT 57.382 45.455 1.29 0.00 45.83 1.73
713 724 4.405756 AAGACTCTCAGGGAGGAACTTA 57.594 45.455 1.29 0.00 45.83 2.24
714 725 3.268034 AAGACTCTCAGGGAGGAACTT 57.732 47.619 1.29 1.84 45.83 2.66
715 726 3.268034 AAAGACTCTCAGGGAGGAACT 57.732 47.619 1.29 0.00 45.83 3.01
716 727 4.359434 AAAAAGACTCTCAGGGAGGAAC 57.641 45.455 1.29 0.00 45.83 3.62
734 745 4.898265 TGGTGATTTGGGACTCATCAAAAA 59.102 37.500 0.00 0.00 36.60 1.94
735 746 4.280677 GTGGTGATTTGGGACTCATCAAAA 59.719 41.667 0.00 0.00 34.46 2.44
736 747 3.826157 GTGGTGATTTGGGACTCATCAAA 59.174 43.478 0.00 0.00 34.46 2.69
737 748 3.074390 AGTGGTGATTTGGGACTCATCAA 59.926 43.478 0.00 0.00 34.46 2.57
738 749 2.644299 AGTGGTGATTTGGGACTCATCA 59.356 45.455 0.00 0.00 30.23 3.07
739 750 3.356529 AGTGGTGATTTGGGACTCATC 57.643 47.619 0.00 0.00 0.00 2.92
740 751 3.814504 AAGTGGTGATTTGGGACTCAT 57.185 42.857 0.00 0.00 0.00 2.90
741 752 3.593442 AAAGTGGTGATTTGGGACTCA 57.407 42.857 0.00 0.00 0.00 3.41
742 753 5.070685 ACTTAAAGTGGTGATTTGGGACTC 58.929 41.667 0.00 0.00 0.00 3.36
743 754 5.061721 ACTTAAAGTGGTGATTTGGGACT 57.938 39.130 0.00 0.00 0.00 3.85
744 755 4.217767 GGACTTAAAGTGGTGATTTGGGAC 59.782 45.833 0.00 0.00 0.00 4.46
745 756 4.403734 GGACTTAAAGTGGTGATTTGGGA 58.596 43.478 0.00 0.00 0.00 4.37
746 757 3.509967 GGGACTTAAAGTGGTGATTTGGG 59.490 47.826 0.00 0.00 0.00 4.12
747 758 4.407365 AGGGACTTAAAGTGGTGATTTGG 58.593 43.478 0.00 0.00 27.25 3.28
748 759 8.801882 TTATAGGGACTTAAAGTGGTGATTTG 57.198 34.615 0.00 0.00 41.75 2.32
749 760 8.612145 ACTTATAGGGACTTAAAGTGGTGATTT 58.388 33.333 0.00 0.00 39.58 2.17
750 761 8.159229 ACTTATAGGGACTTAAAGTGGTGATT 57.841 34.615 0.00 0.00 39.58 2.57
751 762 7.147532 GGACTTATAGGGACTTAAAGTGGTGAT 60.148 40.741 0.00 0.00 40.60 3.06
752 763 6.155737 GGACTTATAGGGACTTAAAGTGGTGA 59.844 42.308 0.00 0.00 40.60 4.02
753 764 6.346896 GGACTTATAGGGACTTAAAGTGGTG 58.653 44.000 0.00 0.00 40.60 4.17
754 765 5.427806 GGGACTTATAGGGACTTAAAGTGGT 59.572 44.000 0.00 0.00 40.60 4.16
755 766 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
756 767 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
757 768 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
758 769 6.042208 CAGGAGGGACTTATAGGGACTTAAAG 59.958 46.154 0.00 0.00 41.55 1.85
759 770 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
760 771 5.042827 ACAGGAGGGACTTATAGGGACTTAA 60.043 44.000 0.00 0.00 41.55 1.85
761 772 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
762 773 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
763 774 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
764 775 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
765 776 4.037927 CAAACAGGAGGGACTTATAGGGA 58.962 47.826 0.00 0.00 41.55 4.20
766 777 3.136626 CCAAACAGGAGGGACTTATAGGG 59.863 52.174 0.00 0.00 41.55 3.53
767 778 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
768 779 5.437191 AACCAAACAGGAGGGACTTATAG 57.563 43.478 0.00 0.00 41.55 1.31
769 780 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
770 781 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
771 782 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
772 783 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
774 785 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
775 786 3.010138 CCATCTAAACCAAACAGGAGGGA 59.990 47.826 0.00 0.00 41.22 4.20
776 787 3.356290 CCATCTAAACCAAACAGGAGGG 58.644 50.000 0.00 0.00 41.22 4.30
777 788 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
778 789 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
779 790 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
780 791 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
781 792 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
782 793 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
783 794 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
784 795 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
785 796 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
786 797 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
787 798 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
788 799 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
789 800 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
790 801 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
792 803 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
812 823 6.399743 GTGTTTGTTTCCAGGGACTTAAAAA 58.600 36.000 0.00 0.00 34.60 1.94
813 824 5.105269 GGTGTTTGTTTCCAGGGACTTAAAA 60.105 40.000 0.00 0.00 34.60 1.52
814 825 4.403113 GGTGTTTGTTTCCAGGGACTTAAA 59.597 41.667 0.00 0.00 34.60 1.52
815 826 3.955551 GGTGTTTGTTTCCAGGGACTTAA 59.044 43.478 0.00 0.00 34.60 1.85
816 827 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
817 828 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
818 829 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
819 830 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
820 831 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
821 832 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
822 833 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
823 834 5.770162 AGATTAAGAGGGTGTTTGTTTCCAG 59.230 40.000 0.00 0.00 0.00 3.86
824 835 5.701224 AGATTAAGAGGGTGTTTGTTTCCA 58.299 37.500 0.00 0.00 0.00 3.53
825 836 6.004574 AGAGATTAAGAGGGTGTTTGTTTCC 58.995 40.000 0.00 0.00 0.00 3.13
826 837 7.511959 AAGAGATTAAGAGGGTGTTTGTTTC 57.488 36.000 0.00 0.00 0.00 2.78
827 838 6.204882 CGAAGAGATTAAGAGGGTGTTTGTTT 59.795 38.462 0.00 0.00 0.00 2.83
828 839 5.701290 CGAAGAGATTAAGAGGGTGTTTGTT 59.299 40.000 0.00 0.00 0.00 2.83
829 840 5.238583 CGAAGAGATTAAGAGGGTGTTTGT 58.761 41.667 0.00 0.00 0.00 2.83
830 841 4.631813 CCGAAGAGATTAAGAGGGTGTTTG 59.368 45.833 0.00 0.00 0.00 2.93
831 842 4.323562 CCCGAAGAGATTAAGAGGGTGTTT 60.324 45.833 0.00 0.00 33.00 2.83
832 843 3.197983 CCCGAAGAGATTAAGAGGGTGTT 59.802 47.826 0.00 0.00 33.00 3.32
833 844 2.766828 CCCGAAGAGATTAAGAGGGTGT 59.233 50.000 0.00 0.00 33.00 4.16
834 845 2.103263 CCCCGAAGAGATTAAGAGGGTG 59.897 54.545 0.00 0.00 35.75 4.61
835 846 2.399580 CCCCGAAGAGATTAAGAGGGT 58.600 52.381 0.00 0.00 35.75 4.34
836 847 1.070914 GCCCCGAAGAGATTAAGAGGG 59.929 57.143 0.00 0.00 37.20 4.30
837 848 1.070914 GGCCCCGAAGAGATTAAGAGG 59.929 57.143 0.00 0.00 0.00 3.69
838 849 2.043227 AGGCCCCGAAGAGATTAAGAG 58.957 52.381 0.00 0.00 0.00 2.85
839 850 1.762957 CAGGCCCCGAAGAGATTAAGA 59.237 52.381 0.00 0.00 0.00 2.10
840 851 1.811941 GCAGGCCCCGAAGAGATTAAG 60.812 57.143 0.00 0.00 0.00 1.85
841 852 0.180406 GCAGGCCCCGAAGAGATTAA 59.820 55.000 0.00 0.00 0.00 1.40
842 853 0.980754 TGCAGGCCCCGAAGAGATTA 60.981 55.000 0.00 0.00 0.00 1.75
843 854 1.852157 TTGCAGGCCCCGAAGAGATT 61.852 55.000 0.00 0.00 0.00 2.40
866 877 4.760047 CGACTTGGAGGCCCACCG 62.760 72.222 0.00 0.00 43.41 4.94
867 878 3.316573 CTCGACTTGGAGGCCCACC 62.317 68.421 0.00 3.98 43.41 4.61
868 879 2.266055 CTCGACTTGGAGGCCCAC 59.734 66.667 0.00 0.00 43.41 4.61
869 880 2.203788 ACTCGACTTGGAGGCCCA 60.204 61.111 0.00 0.00 41.64 5.36
870 881 2.579738 GACTCGACTTGGAGGCCC 59.420 66.667 0.00 0.00 35.97 5.80
871 882 2.182030 CGACTCGACTTGGAGGCC 59.818 66.667 0.00 0.00 38.96 5.19
872 883 1.310933 TACCGACTCGACTTGGAGGC 61.311 60.000 5.43 0.00 38.77 4.70
873 884 1.135460 GTTACCGACTCGACTTGGAGG 60.135 57.143 5.43 0.00 38.39 4.30
875 886 1.538512 CAGTTACCGACTCGACTTGGA 59.461 52.381 5.43 0.00 36.10 3.53
876 887 1.538512 TCAGTTACCGACTCGACTTGG 59.461 52.381 0.00 0.00 36.10 3.61
877 888 2.983402 TCAGTTACCGACTCGACTTG 57.017 50.000 0.00 0.00 36.10 3.16
878 889 3.551659 GGTTTCAGTTACCGACTCGACTT 60.552 47.826 0.00 0.00 36.10 3.01
879 890 2.030451 GGTTTCAGTTACCGACTCGACT 60.030 50.000 0.00 0.00 36.10 4.18
880 891 2.323059 GGTTTCAGTTACCGACTCGAC 58.677 52.381 0.00 0.00 36.10 4.20
881 892 2.712057 GGTTTCAGTTACCGACTCGA 57.288 50.000 0.00 0.00 36.10 4.04
927 938 7.229581 AGAGGTGGGTATCTAAATCGATTAC 57.770 40.000 11.83 5.25 0.00 1.89
939 950 0.472161 GGGAGGGAGAGGTGGGTATC 60.472 65.000 0.00 0.00 0.00 2.24
966 977 1.106944 AGCAGGTGGGGTTTTTCGTG 61.107 55.000 0.00 0.00 0.00 4.35
974 985 0.404426 GGTTTAGAAGCAGGTGGGGT 59.596 55.000 0.00 0.00 0.00 4.95
985 996 0.324275 GCCATGGCTGGGGTTTAGAA 60.324 55.000 29.98 0.00 43.36 2.10
1026 1043 3.634448 CCTCGTAGTTGTCCTCATCATCT 59.366 47.826 0.00 0.00 0.00 2.90
1032 1049 2.581216 ACTCCTCGTAGTTGTCCTCA 57.419 50.000 0.00 0.00 0.00 3.86
1404 1454 4.436998 CGGAGCTCGTCGGCCTTT 62.437 66.667 7.83 0.00 0.00 3.11
1467 1517 4.344865 TCCCAGAAGTTGCGGGCC 62.345 66.667 0.00 0.00 40.05 5.80
1774 1824 3.011517 GGCCTGCTTGAGGGGAGA 61.012 66.667 0.00 0.00 43.07 3.71
2001 2055 6.785337 TTCATATTACTCCTCCGTCTTCAA 57.215 37.500 0.00 0.00 0.00 2.69
2003 2057 5.692654 GCTTTCATATTACTCCTCCGTCTTC 59.307 44.000 0.00 0.00 0.00 2.87
2179 2671 7.956420 TTCGATAATTATAGACACGCCAATT 57.044 32.000 7.68 0.00 0.00 2.32
2221 2713 3.022406 GTCACCCCTACTCTGACGTATT 58.978 50.000 0.00 0.00 0.00 1.89
2372 2871 2.158608 AGGAGGGCCTGCAATATAACAC 60.159 50.000 27.71 0.00 44.90 3.32
2396 2895 1.227823 CGGAGGTTGCTGGTGTTCA 60.228 57.895 0.00 0.00 0.00 3.18
2409 2908 5.521906 TTCATTTAGACTGATCTCGGAGG 57.478 43.478 4.96 0.00 36.29 4.30
2410 2909 7.834068 TTTTTCATTTAGACTGATCTCGGAG 57.166 36.000 0.00 0.00 36.29 4.63
2491 3051 7.820386 TGTAATCGTTGGCATTAACTAAGAAGA 59.180 33.333 0.00 0.00 0.00 2.87
2518 3085 6.127980 TGCTCTGTCTATATAACGATGCCTAC 60.128 42.308 0.00 0.00 0.00 3.18
2572 3167 4.924305 CCAATGATGGGGATTAGTTGTG 57.076 45.455 0.00 0.00 43.51 3.33
2695 3290 2.500098 CGAGTAATTTGGGACAGAGGGA 59.500 50.000 0.00 0.00 42.39 4.20
2696 3291 2.236395 ACGAGTAATTTGGGACAGAGGG 59.764 50.000 0.00 0.00 42.39 4.30
2697 3292 3.522553 GACGAGTAATTTGGGACAGAGG 58.477 50.000 0.00 0.00 42.39 3.69
2698 3293 3.179830 CGACGAGTAATTTGGGACAGAG 58.820 50.000 0.00 0.00 42.39 3.35
2699 3294 2.673043 GCGACGAGTAATTTGGGACAGA 60.673 50.000 0.00 0.00 42.39 3.41
2701 3296 1.001068 TGCGACGAGTAATTTGGGACA 59.999 47.619 0.00 0.00 0.00 4.02
2704 3299 2.004583 TCTGCGACGAGTAATTTGGG 57.995 50.000 0.00 0.00 0.00 4.12
2705 3300 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2706 3301 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2707 3302 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2708 3303 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2709 3304 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2711 3306 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2713 3308 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2715 3310 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2716 3311 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
2718 3313 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
2755 3350 1.411246 TGTCGCAGGTATGGATGTACC 59.589 52.381 0.00 0.00 43.65 3.34
2756 3351 2.882927 TGTCGCAGGTATGGATGTAC 57.117 50.000 0.00 0.00 0.00 2.90
2757 3352 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2758 3353 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2759 3354 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2760 3355 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2761 3356 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2762 3357 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2763 3358 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2764 3359 3.454375 CCGAATTACTTGTCGCAGGTAT 58.546 45.455 3.46 0.00 35.93 2.73
2766 3361 1.674817 CCCGAATTACTTGTCGCAGGT 60.675 52.381 0.00 0.91 35.93 4.00
2767 3362 1.006832 CCCGAATTACTTGTCGCAGG 58.993 55.000 0.00 0.00 35.93 4.85
2768 3363 1.659098 GTCCCGAATTACTTGTCGCAG 59.341 52.381 0.00 0.00 35.93 5.18
2769 3364 1.717194 GTCCCGAATTACTTGTCGCA 58.283 50.000 0.00 0.00 35.93 5.10
2770 3365 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
2771 3366 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
2772 3367 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
2774 3369 1.935933 CCTCCGTCCCGAATTACTTG 58.064 55.000 0.00 0.00 0.00 3.16
3023 4131 1.873591 CACGCACTGCTTTCTAAAGGT 59.126 47.619 4.71 0.00 36.53 3.50
3041 4151 9.196552 AGCTATTAAGAAATTTGAAAACTGCAC 57.803 29.630 0.00 0.00 0.00 4.57
3067 4177 5.769662 ACATACCTGTGCAAATCAAGAAAGA 59.230 36.000 0.00 0.00 33.22 2.52
4020 5135 9.140874 GTAAGGTAAGGTATGGTGTATCTTACT 57.859 37.037 14.44 3.20 37.26 2.24
4526 5659 4.202192 TGACTCTTATAGTGAGCATGGCAG 60.202 45.833 0.00 0.00 39.07 4.85
4547 5680 3.826157 CCACAAACTGGCCTAATTTCTGA 59.174 43.478 3.32 0.00 31.36 3.27
4580 5721 0.532573 TGGAGCTCATCTGTTCGGTC 59.467 55.000 17.19 0.00 0.00 4.79
4584 5725 3.376546 GGTCAAATGGAGCTCATCTGTTC 59.623 47.826 17.19 0.00 40.87 3.18
4742 5883 4.525912 ACAATCTTCATTGCTTTGGACC 57.474 40.909 0.00 0.00 43.03 4.46
4772 5913 7.455058 TGTTTAGGTCCTAGAGCAATTTTACA 58.545 34.615 0.00 0.00 31.89 2.41
4798 5939 3.764237 TCATTAAGGTCCCCGATAAGC 57.236 47.619 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.