Multiple sequence alignment - TraesCS5D01G158900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G158900 chr5D 100.000 4133 0 0 1 4133 247078759 247074627 0.000000e+00 7633.0
1 TraesCS5D01G158900 chr5D 100.000 3794 0 0 4317 8110 247074443 247070650 0.000000e+00 7007.0
2 TraesCS5D01G158900 chr5D 95.785 261 10 1 6286 6545 15953914 15954174 3.500000e-113 420.0
3 TraesCS5D01G158900 chr5D 86.420 324 40 3 7788 8110 62529895 62530215 1.290000e-92 351.0
4 TraesCS5D01G158900 chr5D 96.078 102 4 0 4317 4418 222428130 222428029 5.030000e-37 167.0
5 TraesCS5D01G158900 chr5B 97.234 3651 61 15 515 4133 281576293 281579935 0.000000e+00 6146.0
6 TraesCS5D01G158900 chr5B 94.875 1834 68 7 4418 6235 281579956 281581779 0.000000e+00 2843.0
7 TraesCS5D01G158900 chr5B 93.391 1044 36 15 6545 7578 281581809 281582829 0.000000e+00 1515.0
8 TraesCS5D01G158900 chr5B 88.825 519 34 6 1 513 281575758 281576258 4.160000e-172 616.0
9 TraesCS5D01G158900 chr5B 91.129 124 6 4 7675 7796 281583077 281583197 6.510000e-36 163.0
10 TraesCS5D01G158900 chr5B 84.746 118 8 4 6286 6403 655472723 655472830 8.610000e-20 110.0
11 TraesCS5D01G158900 chr5A 95.473 3601 81 25 566 4131 331118404 331114851 0.000000e+00 5672.0
12 TraesCS5D01G158900 chr5A 94.746 1808 64 10 4443 6235 331114601 331112810 0.000000e+00 2784.0
13 TraesCS5D01G158900 chr5A 93.543 1177 40 12 6545 7692 331112780 331111611 0.000000e+00 1720.0
14 TraesCS5D01G158900 chr5A 88.211 246 14 7 1 243 331118980 331118747 6.200000e-71 279.0
15 TraesCS5D01G158900 chr5A 95.283 106 4 1 4317 4421 706933975 706934080 5.030000e-37 167.0
16 TraesCS5D01G158900 chr5A 91.667 120 9 1 7678 7796 331111597 331111478 1.810000e-36 165.0
17 TraesCS5D01G158900 chr5A 93.636 110 6 1 4317 4426 7007334 7007442 6.510000e-36 163.0
18 TraesCS5D01G158900 chr5A 86.364 132 15 3 6294 6424 560609067 560609196 3.050000e-29 141.0
19 TraesCS5D01G158900 chr3A 90.418 981 69 9 3092 4066 95944668 95945629 0.000000e+00 1267.0
20 TraesCS5D01G158900 chr3A 84.819 1021 120 20 5121 6108 95947609 95948627 0.000000e+00 994.0
21 TraesCS5D01G158900 chr3A 79.200 250 39 12 6298 6546 59427752 59427989 2.340000e-35 161.0
22 TraesCS5D01G158900 chr3B 90.134 973 74 7 3092 4061 127855332 127856285 0.000000e+00 1245.0
23 TraesCS5D01G158900 chr3B 85.371 1039 112 22 5121 6120 127861482 127862519 0.000000e+00 1040.0
24 TraesCS5D01G158900 chr3B 81.818 264 34 11 6286 6547 58625677 58625928 8.250000e-50 209.0
25 TraesCS5D01G158900 chr3D 89.490 980 79 8 3092 4066 81692320 81693280 0.000000e+00 1218.0
26 TraesCS5D01G158900 chr3D 85.559 1011 113 17 5129 6108 81695311 81696319 0.000000e+00 1027.0
27 TraesCS5D01G158900 chr3D 98.106 264 4 1 6286 6548 140412423 140412160 7.420000e-125 459.0
28 TraesCS5D01G158900 chr3D 95.413 109 4 1 4317 4425 159620538 159620645 1.080000e-38 172.0
29 TraesCS5D01G158900 chr3D 96.190 105 4 0 4317 4421 433566096 433565992 1.080000e-38 172.0
30 TraesCS5D01G158900 chr3D 95.238 105 5 0 4317 4421 302930296 302930192 5.030000e-37 167.0
31 TraesCS5D01G158900 chr7D 98.106 264 4 1 6286 6548 69484893 69485156 7.420000e-125 459.0
32 TraesCS5D01G158900 chr7D 96.198 263 8 2 6286 6546 104739740 104740002 5.820000e-116 429.0
33 TraesCS5D01G158900 chr7D 95.489 266 10 2 6286 6549 41506924 41507189 2.710000e-114 424.0
34 TraesCS5D01G158900 chr7D 87.261 314 39 1 7798 8110 329100549 329100236 2.780000e-94 357.0
35 TraesCS5D01G158900 chr7D 86.875 320 41 1 7792 8110 561806013 561805694 2.780000e-94 357.0
36 TraesCS5D01G158900 chr7D 97.143 35 0 1 6260 6294 41506883 41506916 3.160000e-04 58.4
37 TraesCS5D01G158900 chr4D 97.727 264 4 2 6286 6548 508228399 508228661 3.450000e-123 453.0
38 TraesCS5D01G158900 chr4D 96.935 261 7 1 6286 6545 368500619 368500879 3.480000e-118 436.0
39 TraesCS5D01G158900 chr4D 88.449 303 33 2 7810 8110 460656797 460656495 1.660000e-96 364.0
40 TraesCS5D01G158900 chr4D 88.449 303 33 2 7810 8110 460660897 460660595 1.660000e-96 364.0
41 TraesCS5D01G158900 chr4D 88.449 303 33 2 7810 8110 460663267 460662965 1.660000e-96 364.0
42 TraesCS5D01G158900 chr4D 88.449 303 33 2 7810 8110 460665549 460665247 1.660000e-96 364.0
43 TraesCS5D01G158900 chr4D 88.449 303 33 2 7810 8110 460666814 460666512 1.660000e-96 364.0
44 TraesCS5D01G158900 chr4D 94.340 106 6 0 4317 4422 317234722 317234617 6.510000e-36 163.0
45 TraesCS5D01G158900 chr4D 95.098 102 5 0 4317 4418 80470015 80469914 2.340000e-35 161.0
46 TraesCS5D01G158900 chr4D 95.098 102 5 0 4317 4418 211385432 211385331 2.340000e-35 161.0
47 TraesCS5D01G158900 chr4D 94.175 103 6 0 4317 4419 483110238 483110136 3.030000e-34 158.0
48 TraesCS5D01G158900 chr4D 94.118 102 6 0 4317 4418 415293013 415293114 1.090000e-33 156.0
49 TraesCS5D01G158900 chr6D 96.578 263 7 2 6286 6546 461518735 461518997 1.250000e-117 435.0
50 TraesCS5D01G158900 chr6D 96.078 102 4 0 4317 4418 343556365 343556264 5.030000e-37 167.0
51 TraesCS5D01G158900 chr6D 95.146 103 5 0 4317 4419 7489844 7489742 6.510000e-36 163.0
52 TraesCS5D01G158900 chr6D 95.146 103 5 0 4317 4419 7493769 7493667 6.510000e-36 163.0
53 TraesCS5D01G158900 chr6D 94.393 107 5 1 4317 4423 467047368 467047473 6.510000e-36 163.0
54 TraesCS5D01G158900 chr1D 95.849 265 9 2 6286 6548 113862673 113862409 2.090000e-115 427.0
55 TraesCS5D01G158900 chr1D 94.340 106 6 0 4317 4422 247520963 247521068 6.510000e-36 163.0
56 TraesCS5D01G158900 chr1D 95.098 102 5 0 4317 4418 69088001 69088102 2.340000e-35 161.0
57 TraesCS5D01G158900 chr1D 95.098 102 5 0 4317 4418 100826391 100826492 2.340000e-35 161.0
58 TraesCS5D01G158900 chr1D 95.098 102 5 0 4317 4418 227655412 227655311 2.340000e-35 161.0
59 TraesCS5D01G158900 chr1D 93.578 109 6 1 4317 4425 386156822 386156715 2.340000e-35 161.0
60 TraesCS5D01G158900 chr2A 87.461 319 33 4 7793 8110 564613436 564613748 2.150000e-95 361.0
61 TraesCS5D01G158900 chr2A 95.283 106 5 0 4317 4422 63693570 63693675 1.400000e-37 169.0
62 TraesCS5D01G158900 chr2B 81.369 263 37 9 6286 6547 549383245 549382994 3.840000e-48 204.0
63 TraesCS5D01G158900 chr2B 86.822 129 8 4 6288 6407 568822598 568822726 1.420000e-27 135.0
64 TraesCS5D01G158900 chr7B 81.061 264 35 11 6286 6547 652987909 652987659 6.420000e-46 196.0
65 TraesCS5D01G158900 chr2D 96.154 104 4 0 4317 4420 516440347 516440244 3.890000e-38 171.0
66 TraesCS5D01G158900 chr1A 96.154 104 4 0 4317 4420 22631578 22631681 3.890000e-38 171.0
67 TraesCS5D01G158900 chr1A 95.238 105 5 0 4317 4421 376145944 376145840 5.030000e-37 167.0
68 TraesCS5D01G158900 chr1A 95.098 102 5 0 4317 4418 343396701 343396802 2.340000e-35 161.0
69 TraesCS5D01G158900 chr1A 95.098 102 5 0 4317 4418 441770375 441770476 2.340000e-35 161.0
70 TraesCS5D01G158900 chr4A 95.327 107 4 1 4317 4423 636654184 636654289 1.400000e-37 169.0
71 TraesCS5D01G158900 chr4A 92.920 113 8 0 4317 4429 594217970 594217858 1.810000e-36 165.0
72 TraesCS5D01G158900 chr4A 91.667 120 6 4 4317 4434 537434410 537434293 6.510000e-36 163.0
73 TraesCS5D01G158900 chr4A 89.922 129 9 4 4317 4445 628491015 628491139 6.510000e-36 163.0
74 TraesCS5D01G158900 chrUn 95.146 103 5 0 4317 4419 352766882 352766984 6.510000e-36 163.0
75 TraesCS5D01G158900 chrUn 94.118 102 6 0 4317 4418 11239901 11239800 1.090000e-33 156.0
76 TraesCS5D01G158900 chrUn 94.000 100 6 0 4317 4416 30405961 30406060 1.410000e-32 152.0
77 TraesCS5D01G158900 chrUn 93.204 103 7 0 4317 4419 478682124 478682022 1.410000e-32 152.0
78 TraesCS5D01G158900 chrUn 93.137 102 7 0 4317 4418 103936200 103936301 5.070000e-32 150.0
79 TraesCS5D01G158900 chrUn 91.509 106 8 1 4317 4422 338020805 338020909 2.360000e-30 145.0
80 TraesCS5D01G158900 chrUn 91.176 102 9 0 4317 4418 147145525 147145424 1.100000e-28 139.0
81 TraesCS5D01G158900 chrUn 91.176 102 9 0 4317 4418 147296799 147296698 1.100000e-28 139.0
82 TraesCS5D01G158900 chrUn 90.000 100 10 0 4319 4418 432033539 432033440 6.610000e-26 130.0
83 TraesCS5D01G158900 chrUn 89.899 99 10 0 4317 4415 82693294 82693392 2.380000e-25 128.0
84 TraesCS5D01G158900 chr4B 93.636 110 6 1 4317 4425 54037937 54038046 6.510000e-36 163.0
85 TraesCS5D01G158900 chr6A 93.519 108 7 0 4317 4424 183352226 183352119 2.340000e-35 161.0
86 TraesCS5D01G158900 chr6A 92.035 113 8 1 4317 4428 38893357 38893245 3.030000e-34 158.0
87 TraesCS5D01G158900 chr6A 90.598 117 8 3 4317 4431 190598721 190598836 1.410000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G158900 chr5D 247070650 247078759 8109 True 7320.0 7633 100.0000 1 8110 2 chr5D.!!$R2 8109
1 TraesCS5D01G158900 chr5B 281575758 281583197 7439 False 2256.6 6146 93.0908 1 7796 5 chr5B.!!$F2 7795
2 TraesCS5D01G158900 chr5A 331111478 331118980 7502 True 2124.0 5672 92.7280 1 7796 5 chr5A.!!$R1 7795
3 TraesCS5D01G158900 chr3A 95944668 95948627 3959 False 1130.5 1267 87.6185 3092 6108 2 chr3A.!!$F2 3016
4 TraesCS5D01G158900 chr3B 127855332 127856285 953 False 1245.0 1245 90.1340 3092 4061 1 chr3B.!!$F2 969
5 TraesCS5D01G158900 chr3B 127861482 127862519 1037 False 1040.0 1040 85.3710 5121 6120 1 chr3B.!!$F3 999
6 TraesCS5D01G158900 chr3D 81692320 81696319 3999 False 1122.5 1218 87.5245 3092 6108 2 chr3D.!!$F2 3016
7 TraesCS5D01G158900 chr4D 460656495 460666814 10319 True 364.0 364 88.4490 7810 8110 5 chr4D.!!$R5 300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 288 0.040646 TCCCCTATATGACCGCGGAT 59.959 55.000 35.90 19.1 0.00 4.18 F
1278 1403 1.139095 CTACAACGTCTCCGGCCTC 59.861 63.158 0.00 0.0 38.78 4.70 F
2155 2284 0.540830 ATGGCCGGGTGCTTAAAACA 60.541 50.000 2.18 0.0 40.92 2.83 F
2529 2658 0.532573 TGGAGCTCATCTGTTCGGTC 59.467 55.000 17.19 0.0 0.00 4.79 F
4339 4546 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.0 35.93 5.19 F
6268 7527 0.180406 GCAGGCCCCGAAGAGATTAA 59.820 55.000 0.00 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2284 0.107508 CATTCAGCCAGTCCGACCAT 60.108 55.000 0.00 0.00 0.00 3.55 R
2529 2658 1.538512 CAGTTTGTGGGTCATGAGCAG 59.461 52.381 25.18 2.14 0.00 4.24 R
3828 3987 3.066621 TGAAGCCAGTTGTTGTCAATGTC 59.933 43.478 0.00 0.00 35.92 3.06 R
4388 4595 1.001068 TGTCCCAAATTACTCGTCGCA 59.999 47.619 0.00 0.00 0.00 5.10 R
6270 7529 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34 R
7946 10156 0.036765 TTTGTCGGTTCCGATGAGGG 60.037 55.000 16.87 0.00 40.65 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 76 8.845227 TCTTAGTGTTTTGAATTGCATGAACTA 58.155 29.630 0.00 0.00 0.00 2.24
186 207 7.856145 TTTTGCATGACTTGGTAAAACAAAT 57.144 28.000 0.00 0.00 0.00 2.32
187 208 8.948631 TTTTGCATGACTTGGTAAAACAAATA 57.051 26.923 0.00 0.00 0.00 1.40
188 209 7.938563 TTGCATGACTTGGTAAAACAAATAC 57.061 32.000 0.00 0.00 0.00 1.89
189 210 7.043961 TGCATGACTTGGTAAAACAAATACA 57.956 32.000 0.00 0.00 0.00 2.29
190 211 7.665690 TGCATGACTTGGTAAAACAAATACAT 58.334 30.769 0.00 0.00 0.00 2.29
191 212 7.598118 TGCATGACTTGGTAAAACAAATACATG 59.402 33.333 0.00 12.73 37.74 3.21
192 213 7.812191 GCATGACTTGGTAAAACAAATACATGA 59.188 33.333 17.51 0.00 37.37 3.07
195 216 9.295825 TGACTTGGTAAAACAAATACATGATCT 57.704 29.630 0.00 0.00 0.00 2.75
197 218 9.912634 ACTTGGTAAAACAAATACATGATCTTG 57.087 29.630 0.00 7.04 0.00 3.02
198 219 9.357652 CTTGGTAAAACAAATACATGATCTTGG 57.642 33.333 12.76 0.00 0.00 3.61
201 222 8.190784 GGTAAAACAAATACATGATCTTGGAGG 58.809 37.037 12.76 1.88 0.00 4.30
254 277 5.568620 ATTTGACACCTCCCCTATATGAC 57.431 43.478 0.00 0.00 0.00 3.06
261 288 0.040646 TCCCCTATATGACCGCGGAT 59.959 55.000 35.90 19.10 0.00 4.18
267 294 2.325583 ATATGACCGCGGATGTGTTT 57.674 45.000 35.90 7.12 0.00 2.83
326 353 4.162888 CCATCAGCTGCATCCCTATATACA 59.837 45.833 9.47 0.00 0.00 2.29
341 368 9.951866 TCCCTATATACATGGTCACATACATAT 57.048 33.333 0.00 0.00 34.99 1.78
392 419 3.188786 GACAGCGATCCGTGGTGC 61.189 66.667 0.00 0.00 38.36 5.01
393 420 3.932580 GACAGCGATCCGTGGTGCA 62.933 63.158 0.00 0.00 38.36 4.57
435 462 2.554032 GCCCAAAACATCCGGATATGAG 59.446 50.000 18.63 7.35 0.00 2.90
470 545 7.284034 AGGGTTCATGAACATATGAGAACAATC 59.716 37.037 33.42 14.79 42.85 2.67
546 661 8.087136 TGCAGATGCTCTAAAGAGATAATACAG 58.913 37.037 11.20 0.00 44.74 2.74
553 668 9.601971 GCTCTAAAGAGATAATACAGTTACTCG 57.398 37.037 11.20 0.00 44.74 4.18
883 1008 4.452733 GGCACCTCCCCGTTCTCG 62.453 72.222 0.00 0.00 0.00 4.04
1278 1403 1.139095 CTACAACGTCTCCGGCCTC 59.861 63.158 0.00 0.00 38.78 4.70
1507 1632 3.641439 CGATCGCTTCGTTTCTTTCAT 57.359 42.857 0.26 0.00 43.01 2.57
1547 1672 2.023673 CTGCAACAAACACCTCCTTCA 58.976 47.619 0.00 0.00 0.00 3.02
1548 1673 2.023673 TGCAACAAACACCTCCTTCAG 58.976 47.619 0.00 0.00 0.00 3.02
2104 2233 2.553028 GCCAGATTCAAGGTCTTGGTCA 60.553 50.000 10.39 0.00 40.78 4.02
2128 2257 2.184830 CGACGAGGTGCCGAGGATA 61.185 63.158 0.00 0.00 0.00 2.59
2149 2278 2.519302 GCATATGGCCGGGTGCTT 60.519 61.111 16.15 0.00 40.92 3.91
2155 2284 0.540830 ATGGCCGGGTGCTTAAAACA 60.541 50.000 2.18 0.00 40.92 2.83
2311 2440 3.764237 TCATTAAGGTCCCCGATAAGC 57.236 47.619 0.00 0.00 0.00 3.09
2337 2466 7.455058 TGTTTAGGTCCTAGAGCAATTTTACA 58.545 34.615 0.00 0.00 31.89 2.41
2367 2496 4.525912 ACAATCTTCATTGCTTTGGACC 57.474 40.909 0.00 0.00 43.03 4.46
2525 2654 3.376546 GGTCAAATGGAGCTCATCTGTTC 59.623 47.826 17.19 0.00 40.87 3.18
2529 2658 0.532573 TGGAGCTCATCTGTTCGGTC 59.467 55.000 17.19 0.00 0.00 4.79
2562 2699 3.826157 CCACAAACTGGCCTAATTTCTGA 59.174 43.478 3.32 0.00 31.36 3.27
2583 2720 4.202192 TGACTCTTATAGTGAGCATGGCAG 60.202 45.833 0.00 0.00 39.07 4.85
4042 4202 5.769662 ACATACCTGTGCAAATCAAGAAAGA 59.230 36.000 0.00 0.00 33.22 2.52
4068 4228 9.196552 AGCTATTAAGAAATTTGAAAACTGCAC 57.803 29.630 0.00 0.00 0.00 4.57
4086 4248 1.873591 CACGCACTGCTTTCTAAAGGT 59.126 47.619 4.71 0.00 36.53 3.50
4336 4543 1.206371 CCTCCGTCCCGAATTACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
4337 4544 2.537401 CTCCGTCCCGAATTACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
4338 4545 1.135315 TCCGTCCCGAATTACTTGTCG 60.135 52.381 0.00 0.00 37.01 4.35
4339 4546 0.643820 CGTCCCGAATTACTTGTCGC 59.356 55.000 0.00 0.00 35.93 5.19
4344 4551 2.417651 CCCGAATTACTTGTCGCAGGTA 60.418 50.000 0.00 0.00 35.93 3.08
4347 4554 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
4349 4556 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
4350 4557 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
4353 4560 2.882927 TGTCGCAGGTATGGATGTAC 57.117 50.000 0.00 0.00 0.00 2.90
4354 4561 1.411246 TGTCGCAGGTATGGATGTACC 59.589 52.381 0.00 0.00 43.65 3.34
4392 4599 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
4393 4600 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
4395 4602 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
4396 4603 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
4398 4605 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
4399 4606 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
4400 4607 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
4402 4609 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
4403 4610 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
4404 4611 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
4405 4612 2.004583 TCTGCGACGAGTAATTTGGG 57.995 50.000 0.00 0.00 0.00 4.12
4406 4613 1.546923 TCTGCGACGAGTAATTTGGGA 59.453 47.619 0.00 0.00 0.00 4.37
4408 4615 1.001068 TGCGACGAGTAATTTGGGACA 59.999 47.619 0.00 0.00 0.00 4.02
4410 4617 2.673043 GCGACGAGTAATTTGGGACAGA 60.673 50.000 0.00 0.00 42.39 3.41
4411 4618 3.179830 CGACGAGTAATTTGGGACAGAG 58.820 50.000 0.00 0.00 42.39 3.35
4413 4620 2.236395 ACGAGTAATTTGGGACAGAGGG 59.764 50.000 0.00 0.00 42.39 4.30
4414 4621 2.500098 CGAGTAATTTGGGACAGAGGGA 59.500 50.000 0.00 0.00 42.39 4.20
4416 4623 3.519913 GAGTAATTTGGGACAGAGGGAGT 59.480 47.826 0.00 0.00 42.39 3.85
4537 5212 4.924305 CCAATGATGGGGATTAGTTGTG 57.076 45.455 0.00 0.00 43.51 3.33
4591 5294 6.127980 TGCTCTGTCTATATAACGATGCCTAC 60.128 42.308 0.00 0.00 0.00 3.18
4713 5484 1.227823 CGGAGGTTGCTGGTGTTCA 60.228 57.895 0.00 0.00 0.00 3.18
4888 5666 3.022406 GTCACCCCTACTCTGACGTATT 58.978 50.000 0.00 0.00 0.00 1.89
4930 5708 7.956420 TTCGATAATTATAGACACGCCAATT 57.044 32.000 7.68 0.00 0.00 2.32
5099 6230 7.041508 CCTGATGTTGCTTTCATATTACTCCTC 60.042 40.741 0.00 0.00 0.00 3.71
5102 6233 5.116882 GTTGCTTTCATATTACTCCTCCGT 58.883 41.667 0.00 0.00 0.00 4.69
5104 6235 4.649674 TGCTTTCATATTACTCCTCCGTCT 59.350 41.667 0.00 0.00 0.00 4.18
5106 6237 5.692654 GCTTTCATATTACTCCTCCGTCTTC 59.307 44.000 0.00 0.00 0.00 2.87
5335 6555 3.011517 GGCCTGCTTGAGGGGAGA 61.012 66.667 0.00 0.00 43.07 3.71
5642 6862 4.344865 TCCCAGAAGTTGCGGGCC 62.345 66.667 0.00 0.00 40.05 5.80
6077 7330 2.581216 ACTCCTCGTAGTTGTCCTCA 57.419 50.000 0.00 0.00 0.00 3.86
6083 7336 3.634448 CCTCGTAGTTGTCCTCATCATCT 59.366 47.826 0.00 0.00 0.00 2.90
6170 7429 0.472161 GGGAGGGAGAGGTGGGTATC 60.472 65.000 0.00 0.00 0.00 2.24
6182 7441 7.229581 AGAGGTGGGTATCTAAATCGATTAC 57.770 40.000 11.83 5.25 0.00 1.89
6235 7494 1.811359 AGTTACCGACTCGACTTGGAG 59.189 52.381 5.43 0.00 39.97 3.86
6237 7496 1.310933 TACCGACTCGACTTGGAGGC 61.311 60.000 5.43 0.00 38.77 4.70
6238 7497 2.182030 CGACTCGACTTGGAGGCC 59.818 66.667 0.00 0.00 38.96 5.19
6241 7500 2.266055 CTCGACTTGGAGGCCCAC 59.734 66.667 0.00 0.00 43.41 4.61
6242 7501 3.316573 CTCGACTTGGAGGCCCACC 62.317 68.421 0.00 3.98 43.41 4.61
6243 7502 4.760047 CGACTTGGAGGCCCACCG 62.760 72.222 0.00 0.00 43.41 4.94
6266 7525 1.852157 TTGCAGGCCCCGAAGAGATT 61.852 55.000 0.00 0.00 0.00 2.40
6267 7526 0.980754 TGCAGGCCCCGAAGAGATTA 60.981 55.000 0.00 0.00 0.00 1.75
6268 7527 0.180406 GCAGGCCCCGAAGAGATTAA 59.820 55.000 0.00 0.00 0.00 1.40
6269 7528 1.811941 GCAGGCCCCGAAGAGATTAAG 60.812 57.143 0.00 0.00 0.00 1.85
6270 7529 1.762957 CAGGCCCCGAAGAGATTAAGA 59.237 52.381 0.00 0.00 0.00 2.10
6272 7531 1.070914 GGCCCCGAAGAGATTAAGAGG 59.929 57.143 0.00 0.00 0.00 3.69
6273 7532 1.070914 GCCCCGAAGAGATTAAGAGGG 59.929 57.143 0.00 0.00 37.20 4.30
6274 7533 2.399580 CCCCGAAGAGATTAAGAGGGT 58.600 52.381 0.00 0.00 35.75 4.34
6275 7534 2.103263 CCCCGAAGAGATTAAGAGGGTG 59.897 54.545 0.00 0.00 35.75 4.61
6278 7537 4.323562 CCCGAAGAGATTAAGAGGGTGTTT 60.324 45.833 0.00 0.00 33.00 2.83
6279 7538 4.631813 CCGAAGAGATTAAGAGGGTGTTTG 59.368 45.833 0.00 0.00 0.00 2.93
6280 7539 5.238583 CGAAGAGATTAAGAGGGTGTTTGT 58.761 41.667 0.00 0.00 0.00 2.83
6281 7540 5.701290 CGAAGAGATTAAGAGGGTGTTTGTT 59.299 40.000 0.00 0.00 0.00 2.83
6282 7541 6.204882 CGAAGAGATTAAGAGGGTGTTTGTTT 59.795 38.462 0.00 0.00 0.00 2.83
6283 7542 7.511959 AAGAGATTAAGAGGGTGTTTGTTTC 57.488 36.000 0.00 0.00 0.00 2.78
6284 7543 6.004574 AGAGATTAAGAGGGTGTTTGTTTCC 58.995 40.000 0.00 0.00 0.00 3.13
6286 7545 5.770162 AGATTAAGAGGGTGTTTGTTTCCAG 59.230 40.000 0.00 0.00 0.00 3.86
6287 7546 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
6288 7547 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
6289 7548 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
6291 7550 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
6292 7551 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
6293 7552 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
6294 7553 3.955551 GGTGTTTGTTTCCAGGGACTTAA 59.044 43.478 0.00 0.00 34.60 1.85
6296 7555 5.105269 GGTGTTTGTTTCCAGGGACTTAAAA 60.105 40.000 0.00 0.00 34.60 1.52
6317 7576 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
6319 7578 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
6320 7579 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
6321 7580 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
6322 7581 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
6324 7583 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
6325 7584 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
6326 7585 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
6327 7586 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
6329 7588 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
6330 7589 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
6331 7590 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
6332 7591 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
6335 7594 3.782656 TCTAAACCAAACAGGAGGGAC 57.217 47.619 0.00 0.00 41.22 4.46
6337 7596 3.720002 TCTAAACCAAACAGGAGGGACTT 59.280 43.478 0.00 0.00 41.55 3.01
6338 7597 4.909088 TCTAAACCAAACAGGAGGGACTTA 59.091 41.667 0.00 0.00 41.55 2.24
6339 7598 4.741928 AAACCAAACAGGAGGGACTTAT 57.258 40.909 0.00 0.00 41.55 1.73
6340 7599 5.853572 AAACCAAACAGGAGGGACTTATA 57.146 39.130 0.00 0.00 41.55 0.98
6342 7601 3.780850 ACCAAACAGGAGGGACTTATAGG 59.219 47.826 0.00 0.00 41.55 2.57
6345 7604 3.331718 ACAGGAGGGACTTATAGGGAC 57.668 52.381 0.00 0.00 41.55 4.46
6346 7605 2.866454 ACAGGAGGGACTTATAGGGACT 59.134 50.000 0.00 0.00 41.55 3.85
6347 7606 3.275228 ACAGGAGGGACTTATAGGGACTT 59.725 47.826 0.00 0.00 41.55 3.01
6348 7607 4.485021 ACAGGAGGGACTTATAGGGACTTA 59.515 45.833 0.00 0.00 41.55 2.24
6350 7609 5.903589 CAGGAGGGACTTATAGGGACTTAAA 59.096 44.000 0.00 0.00 41.55 1.52
6352 7611 5.904169 GGAGGGACTTATAGGGACTTAAAGT 59.096 44.000 0.00 0.00 42.31 2.66
6353 7612 6.183360 GGAGGGACTTATAGGGACTTAAAGTG 60.183 46.154 0.00 0.00 40.60 3.16
6355 7614 5.427806 GGGACTTATAGGGACTTAAAGTGGT 59.572 44.000 0.00 0.00 40.60 4.16
6356 7615 6.346896 GGACTTATAGGGACTTAAAGTGGTG 58.653 44.000 0.00 0.00 40.60 4.17
6357 7616 6.155737 GGACTTATAGGGACTTAAAGTGGTGA 59.844 42.308 0.00 0.00 40.60 4.02
6358 7617 7.147532 GGACTTATAGGGACTTAAAGTGGTGAT 60.148 40.741 0.00 0.00 40.60 3.06
6359 7618 8.159229 ACTTATAGGGACTTAAAGTGGTGATT 57.841 34.615 0.00 0.00 39.58 2.57
6361 7620 8.801882 TTATAGGGACTTAAAGTGGTGATTTG 57.198 34.615 0.00 0.00 41.75 2.32
6362 7621 4.407365 AGGGACTTAAAGTGGTGATTTGG 58.593 43.478 0.00 0.00 27.25 3.28
6363 7622 3.509967 GGGACTTAAAGTGGTGATTTGGG 59.490 47.826 0.00 0.00 0.00 4.12
6364 7623 4.403734 GGACTTAAAGTGGTGATTTGGGA 58.596 43.478 0.00 0.00 0.00 4.37
6366 7625 5.061721 ACTTAAAGTGGTGATTTGGGACT 57.938 39.130 0.00 0.00 0.00 3.85
6367 7626 5.070685 ACTTAAAGTGGTGATTTGGGACTC 58.929 41.667 0.00 0.00 0.00 3.36
6368 7627 3.593442 AAAGTGGTGATTTGGGACTCA 57.407 42.857 0.00 0.00 0.00 3.41
6371 7630 2.644299 AGTGGTGATTTGGGACTCATCA 59.356 45.455 0.00 0.00 30.23 3.07
6372 7631 3.074390 AGTGGTGATTTGGGACTCATCAA 59.926 43.478 0.00 0.00 34.46 2.57
6373 7632 3.826157 GTGGTGATTTGGGACTCATCAAA 59.174 43.478 0.00 0.00 34.46 2.69
6374 7633 4.280677 GTGGTGATTTGGGACTCATCAAAA 59.719 41.667 0.00 0.00 34.46 2.44
6375 7634 4.898265 TGGTGATTTGGGACTCATCAAAAA 59.102 37.500 0.00 0.00 36.60 1.94
6393 7652 4.359434 AAAAAGACTCTCAGGGAGGAAC 57.641 45.455 1.29 0.00 45.83 3.62
6394 7653 3.268034 AAAGACTCTCAGGGAGGAACT 57.732 47.619 1.29 0.00 45.83 3.01
6395 7654 3.268034 AAGACTCTCAGGGAGGAACTT 57.732 47.619 1.29 1.84 45.83 2.66
6398 7657 5.735733 AGACTCTCAGGGAGGAACTTATA 57.264 43.478 1.29 0.00 45.83 0.98
6399 7658 5.701224 AGACTCTCAGGGAGGAACTTATAG 58.299 45.833 1.29 0.00 45.83 1.31
6403 7662 4.423960 TCTCAGGGAGGAACTTATAGGGAT 59.576 45.833 0.00 0.00 41.55 3.85
6404 7663 5.102609 TCTCAGGGAGGAACTTATAGGGATT 60.103 44.000 0.00 0.00 41.55 3.01
6406 7665 6.886637 TCAGGGAGGAACTTATAGGGATTAT 58.113 40.000 0.00 0.00 41.55 1.28
6408 7667 8.123130 TCAGGGAGGAACTTATAGGGATTATAG 58.877 40.741 0.00 0.00 41.55 1.31
6409 7668 7.901861 CAGGGAGGAACTTATAGGGATTATAGT 59.098 40.741 0.00 0.00 41.55 2.12
6410 7669 7.901861 AGGGAGGAACTTATAGGGATTATAGTG 59.098 40.741 0.00 0.00 41.55 2.74
6411 7670 7.125963 GGGAGGAACTTATAGGGATTATAGTGG 59.874 44.444 0.00 0.00 41.55 4.00
6412 7671 7.679025 GGAGGAACTTATAGGGATTATAGTGGT 59.321 40.741 0.00 0.00 41.55 4.16
6413 7672 8.437274 AGGAACTTATAGGGATTATAGTGGTG 57.563 38.462 0.00 0.00 27.25 4.17
6414 7673 8.239478 AGGAACTTATAGGGATTATAGTGGTGA 58.761 37.037 0.00 0.00 27.25 4.02
6415 7674 9.047947 GGAACTTATAGGGATTATAGTGGTGAT 57.952 37.037 0.00 0.00 0.00 3.06
6419 7678 9.672673 CTTATAGGGATTATAGTGGTGATTTGG 57.327 37.037 0.00 0.00 0.00 3.28
6420 7679 5.324832 AGGGATTATAGTGGTGATTTGGG 57.675 43.478 0.00 0.00 0.00 4.12
6422 7681 5.070685 GGGATTATAGTGGTGATTTGGGTC 58.929 45.833 0.00 0.00 0.00 4.46
6423 7682 5.163088 GGGATTATAGTGGTGATTTGGGTCT 60.163 44.000 0.00 0.00 0.00 3.85
6424 7683 6.365520 GGATTATAGTGGTGATTTGGGTCTT 58.634 40.000 0.00 0.00 0.00 3.01
6425 7684 6.833933 GGATTATAGTGGTGATTTGGGTCTTT 59.166 38.462 0.00 0.00 0.00 2.52
6426 7685 7.342026 GGATTATAGTGGTGATTTGGGTCTTTT 59.658 37.037 0.00 0.00 0.00 2.27
6428 7687 8.801882 TTATAGTGGTGATTTGGGTCTTTTAG 57.198 34.615 0.00 0.00 0.00 1.85
6429 7688 3.826729 AGTGGTGATTTGGGTCTTTTAGC 59.173 43.478 0.00 0.00 0.00 3.09
6432 7691 4.220382 TGGTGATTTGGGTCTTTTAGCATG 59.780 41.667 0.00 0.00 0.00 4.06
6433 7692 4.220602 GGTGATTTGGGTCTTTTAGCATGT 59.779 41.667 0.00 0.00 0.00 3.21
6434 7693 5.402398 GTGATTTGGGTCTTTTAGCATGTC 58.598 41.667 0.00 0.00 0.00 3.06
6436 7695 5.716228 TGATTTGGGTCTTTTAGCATGTCAT 59.284 36.000 0.00 0.00 0.00 3.06
6439 7698 7.531857 TTTGGGTCTTTTAGCATGTCATTTA 57.468 32.000 0.00 0.00 0.00 1.40
6441 7700 7.716799 TGGGTCTTTTAGCATGTCATTTAAT 57.283 32.000 0.00 0.00 0.00 1.40
6442 7701 8.815565 TGGGTCTTTTAGCATGTCATTTAATA 57.184 30.769 0.00 0.00 0.00 0.98
6443 7702 9.249053 TGGGTCTTTTAGCATGTCATTTAATAA 57.751 29.630 0.00 0.00 0.00 1.40
6444 7703 9.516314 GGGTCTTTTAGCATGTCATTTAATAAC 57.484 33.333 0.00 0.00 0.00 1.89
6445 7704 9.516314 GGTCTTTTAGCATGTCATTTAATAACC 57.484 33.333 0.00 0.00 0.00 2.85
6452 7711 6.712547 AGCATGTCATTTAATAACCTCTAGCC 59.287 38.462 0.00 0.00 0.00 3.93
6453 7712 6.072452 GCATGTCATTTAATAACCTCTAGCCC 60.072 42.308 0.00 0.00 0.00 5.19
6454 7713 6.569127 TGTCATTTAATAACCTCTAGCCCA 57.431 37.500 0.00 0.00 0.00 5.36
6456 7715 6.998074 TGTCATTTAATAACCTCTAGCCCATG 59.002 38.462 0.00 0.00 0.00 3.66
6457 7716 7.147391 TGTCATTTAATAACCTCTAGCCCATGA 60.147 37.037 0.00 0.00 0.00 3.07
6459 7718 9.111519 TCATTTAATAACCTCTAGCCCATGATA 57.888 33.333 0.00 0.00 0.00 2.15
6460 7719 9.739276 CATTTAATAACCTCTAGCCCATGATAA 57.261 33.333 0.00 0.00 0.00 1.75
6464 7723 4.917906 ACCTCTAGCCCATGATAAATCC 57.082 45.455 0.00 0.00 0.00 3.01
6465 7724 4.507342 ACCTCTAGCCCATGATAAATCCT 58.493 43.478 0.00 0.00 0.00 3.24
6466 7725 4.288105 ACCTCTAGCCCATGATAAATCCTG 59.712 45.833 0.00 0.00 0.00 3.86
6467 7726 4.288105 CCTCTAGCCCATGATAAATCCTGT 59.712 45.833 0.00 0.00 0.00 4.00
6468 7727 5.485353 CCTCTAGCCCATGATAAATCCTGTA 59.515 44.000 0.00 0.00 0.00 2.74
6470 7729 7.387265 TCTAGCCCATGATAAATCCTGTAAA 57.613 36.000 0.00 0.00 0.00 2.01
6471 7730 7.224297 TCTAGCCCATGATAAATCCTGTAAAC 58.776 38.462 0.00 0.00 0.00 2.01
6472 7731 5.765510 AGCCCATGATAAATCCTGTAAACA 58.234 37.500 0.00 0.00 0.00 2.83
6473 7732 6.194235 AGCCCATGATAAATCCTGTAAACAA 58.806 36.000 0.00 0.00 0.00 2.83
6474 7733 6.667414 AGCCCATGATAAATCCTGTAAACAAA 59.333 34.615 0.00 0.00 0.00 2.83
6475 7734 6.756542 GCCCATGATAAATCCTGTAAACAAAC 59.243 38.462 0.00 0.00 0.00 2.93
6476 7735 7.578571 GCCCATGATAAATCCTGTAAACAAACA 60.579 37.037 0.00 0.00 0.00 2.83
6487 7746 4.964593 TGTAAACAAACAGGTAGGGACTC 58.035 43.478 0.00 0.00 41.75 3.36
6488 7747 2.833631 AACAAACAGGTAGGGACTCG 57.166 50.000 0.00 0.00 41.75 4.18
6489 7748 0.974383 ACAAACAGGTAGGGACTCGG 59.026 55.000 0.00 0.00 41.75 4.63
6490 7749 0.249398 CAAACAGGTAGGGACTCGGG 59.751 60.000 0.00 0.00 41.75 5.14
6491 7750 0.115745 AAACAGGTAGGGACTCGGGA 59.884 55.000 0.00 0.00 41.75 5.14
6492 7751 0.614134 AACAGGTAGGGACTCGGGAC 60.614 60.000 0.00 0.00 41.75 4.46
6494 7753 0.324460 CAGGTAGGGACTCGGGACTT 60.324 60.000 0.00 0.00 41.75 3.01
6495 7754 1.064166 CAGGTAGGGACTCGGGACTTA 60.064 57.143 0.00 0.00 41.75 2.24
6496 7755 1.858246 AGGTAGGGACTCGGGACTTAT 59.142 52.381 0.00 0.00 41.75 1.73
6498 7757 3.464833 AGGTAGGGACTCGGGACTTATAA 59.535 47.826 0.00 0.00 41.75 0.98
6500 7759 3.684408 AGGGACTCGGGACTTATAAGT 57.316 47.619 18.05 18.05 43.16 2.24
6501 7760 3.991683 AGGGACTCGGGACTTATAAGTT 58.008 45.455 18.96 2.29 39.88 2.66
6502 7761 3.705072 AGGGACTCGGGACTTATAAGTTG 59.295 47.826 18.96 12.12 39.88 3.16
6504 7763 3.181468 GGACTCGGGACTTATAAGTTGGG 60.181 52.174 18.96 13.91 39.88 4.12
6505 7764 3.703052 GACTCGGGACTTATAAGTTGGGA 59.297 47.826 18.96 14.13 39.88 4.37
6506 7765 3.450096 ACTCGGGACTTATAAGTTGGGAC 59.550 47.826 18.96 6.19 39.88 4.46
6507 7766 3.705072 CTCGGGACTTATAAGTTGGGACT 59.295 47.826 18.96 0.00 39.88 3.85
6539 7798 7.365840 GTCCTAGGACTTATGAAACAAACAG 57.634 40.000 31.12 0.00 41.57 3.16
6540 7799 6.371825 GTCCTAGGACTTATGAAACAAACAGG 59.628 42.308 31.12 0.00 41.57 4.00
6541 7800 5.648092 CCTAGGACTTATGAAACAAACAGGG 59.352 44.000 1.05 0.00 0.00 4.45
6542 7801 3.826729 AGGACTTATGAAACAAACAGGGC 59.173 43.478 0.00 0.00 0.00 5.19
6543 7802 3.056821 GGACTTATGAAACAAACAGGGCC 60.057 47.826 0.00 0.00 0.00 5.80
6570 7829 2.931107 CCCACCACCAGACCCAAA 59.069 61.111 0.00 0.00 0.00 3.28
6581 7840 2.031157 CCAGACCCAAAATTGTCACGTC 60.031 50.000 0.00 0.00 33.89 4.34
7178 8447 3.782656 TCTTTCTTTGGTGGTAGTCCC 57.217 47.619 0.00 0.00 0.00 4.46
7197 8466 2.423947 CCCGGGTAAAGGCTAGTAGAGA 60.424 54.545 14.18 0.00 0.00 3.10
7207 8476 6.478512 AAGGCTAGTAGAGAAGAAGAATGG 57.521 41.667 0.00 0.00 0.00 3.16
7300 8569 7.501559 AGTTGAGCAGGATTCGTTATACTAGTA 59.498 37.037 4.77 4.77 0.00 1.82
7321 8590 5.995282 AGTATAAACAGCTGCACTTGTGTTA 59.005 36.000 15.27 0.38 32.83 2.41
7353 8622 3.537580 AGAGGCGTCAAACAACAAACTA 58.462 40.909 9.41 0.00 0.00 2.24
7454 8741 4.771054 ACCGGAGTAGAATGTGTAACTTCT 59.229 41.667 9.46 0.00 37.78 2.85
7457 8744 5.800941 CGGAGTAGAATGTGTAACTTCTGTC 59.199 44.000 0.00 0.00 35.88 3.51
7482 8769 2.264109 TTCGTGTTTGCAAAGCGAAA 57.736 40.000 31.59 21.67 35.26 3.46
7523 8811 3.682718 ACAGAACTGTTACTGCAAGCAGT 60.683 43.478 28.18 28.18 45.82 4.40
7570 8858 1.271108 TGTGATTTTACTGCTGGCGGA 60.271 47.619 8.50 0.00 0.00 5.54
7603 8891 4.577693 GTCAACATCATGCCAGTGATACAT 59.422 41.667 0.00 0.00 36.72 2.29
7660 8948 7.281999 TGGCGACAAGAAAATGATGATATTACA 59.718 33.333 0.00 0.00 37.44 2.41
7710 9189 1.134175 CCGGTTCTTTGCAACTTGTGT 59.866 47.619 0.00 0.00 0.00 3.72
7723 9202 1.928503 ACTTGTGTTGTACGTGTTCCG 59.071 47.619 0.00 0.00 44.03 4.30
7734 9213 1.394697 CGTGTTCCGTGAATTTGTGC 58.605 50.000 0.00 0.00 0.00 4.57
7776 9255 7.492344 TCAAATTTCAAGCAGTTCTTTTTCTCC 59.508 33.333 0.00 0.00 31.27 3.71
7802 9281 5.151297 TGAGGGGATCAATTTCTTTTTGC 57.849 39.130 0.00 0.00 34.02 3.68
7803 9282 4.592351 TGAGGGGATCAATTTCTTTTTGCA 59.408 37.500 0.00 0.00 34.02 4.08
7804 9283 5.071519 TGAGGGGATCAATTTCTTTTTGCAA 59.928 36.000 0.00 0.00 34.02 4.08
7805 9284 5.554070 AGGGGATCAATTTCTTTTTGCAAG 58.446 37.500 0.00 0.00 0.00 4.01
7808 9287 6.175471 GGGATCAATTTCTTTTTGCAAGGAT 58.825 36.000 0.00 0.00 0.00 3.24
7809 9288 7.330262 GGGATCAATTTCTTTTTGCAAGGATA 58.670 34.615 0.00 0.00 0.00 2.59
7810 9289 7.823799 GGGATCAATTTCTTTTTGCAAGGATAA 59.176 33.333 0.00 0.00 0.00 1.75
7811 9290 8.659491 GGATCAATTTCTTTTTGCAAGGATAAC 58.341 33.333 0.00 0.00 0.00 1.89
7815 9294 9.868389 CAATTTCTTTTTGCAAGGATAACTTTC 57.132 29.630 0.00 0.00 37.29 2.62
7816 9295 9.612066 AATTTCTTTTTGCAAGGATAACTTTCA 57.388 25.926 0.00 0.00 37.29 2.69
7817 9296 9.612066 ATTTCTTTTTGCAAGGATAACTTTCAA 57.388 25.926 0.00 0.00 39.90 2.69
7819 9298 9.612066 TTCTTTTTGCAAGGATAACTTTCAATT 57.388 25.926 0.00 0.00 40.96 2.32
7848 10057 8.902540 TCATCAACTGTCAAGTTAGTACAAAT 57.097 30.769 0.00 0.00 45.07 2.32
7905 10115 3.604582 ACCACCTAGTGACGACTACTAC 58.395 50.000 0.00 0.00 35.23 2.73
7911 10121 2.434428 AGTGACGACTACTACCACTGG 58.566 52.381 0.00 0.00 36.80 4.00
7916 10126 1.747709 GACTACTACCACTGGAGCGA 58.252 55.000 0.71 0.00 0.00 4.93
7946 10156 2.434359 CCGCCGTCTTTGTCCCTC 60.434 66.667 0.00 0.00 0.00 4.30
7951 10161 1.192146 CCGTCTTTGTCCCTCCCTCA 61.192 60.000 0.00 0.00 0.00 3.86
7957 10167 0.252513 TTGTCCCTCCCTCATCGGAA 60.253 55.000 0.00 0.00 33.16 4.30
7983 10194 7.039882 CCGACAAACCTTATTGTAGTAGACAT 58.960 38.462 0.00 0.00 43.31 3.06
8007 10218 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
8023 10234 4.609018 CCCCATAGGACCAGCGCG 62.609 72.222 0.00 0.00 38.24 6.86
8027 10238 3.781307 ATAGGACCAGCGCGCCAA 61.781 61.111 30.33 5.71 0.00 4.52
8035 10246 1.875813 CAGCGCGCCAAAACAACAA 60.876 52.632 30.33 0.00 0.00 2.83
8036 10247 1.067250 AGCGCGCCAAAACAACAAT 59.933 47.368 30.33 0.13 0.00 2.71
8039 10250 1.486801 GCGCCAAAACAACAATCGC 59.513 52.632 0.00 0.00 0.00 4.58
8056 10267 2.567049 CCGCCGACGAAGAGAAGT 59.433 61.111 0.00 0.00 43.93 3.01
8092 10303 7.509546 AGGATCCAATCTATAAACACACGAAT 58.490 34.615 15.82 0.00 0.00 3.34
8099 10310 9.083080 CAATCTATAAACACACGAATACAGACA 57.917 33.333 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 142 6.436843 AACGCCCTTTGTAAATATTCTCTG 57.563 37.500 0.00 0.00 0.00 3.35
146 149 4.945246 TGCAAAAACGCCCTTTGTAAATA 58.055 34.783 6.39 0.00 36.38 1.40
186 207 6.327365 TGCTCTTATTCCTCCAAGATCATGTA 59.673 38.462 0.00 0.00 30.70 2.29
187 208 5.131642 TGCTCTTATTCCTCCAAGATCATGT 59.868 40.000 0.00 0.00 30.70 3.21
188 209 5.618236 TGCTCTTATTCCTCCAAGATCATG 58.382 41.667 0.00 0.00 30.70 3.07
189 210 5.901413 TGCTCTTATTCCTCCAAGATCAT 57.099 39.130 0.00 0.00 30.70 2.45
190 211 5.605908 AGATGCTCTTATTCCTCCAAGATCA 59.394 40.000 0.00 0.00 33.04 2.92
191 212 5.933463 CAGATGCTCTTATTCCTCCAAGATC 59.067 44.000 0.00 0.00 30.70 2.75
192 213 5.745476 GCAGATGCTCTTATTCCTCCAAGAT 60.745 44.000 0.00 0.00 38.21 2.40
194 215 3.814283 GCAGATGCTCTTATTCCTCCAAG 59.186 47.826 0.00 0.00 38.21 3.61
195 216 3.200605 TGCAGATGCTCTTATTCCTCCAA 59.799 43.478 6.35 0.00 42.66 3.53
196 217 2.773661 TGCAGATGCTCTTATTCCTCCA 59.226 45.455 6.35 0.00 42.66 3.86
197 218 3.482156 TGCAGATGCTCTTATTCCTCC 57.518 47.619 6.35 0.00 42.66 4.30
198 219 4.272991 CAGTTGCAGATGCTCTTATTCCTC 59.727 45.833 6.35 0.00 42.66 3.71
201 222 4.034975 GTCCAGTTGCAGATGCTCTTATTC 59.965 45.833 6.35 0.00 42.66 1.75
254 277 1.154225 GAAGCAAACACATCCGCGG 60.154 57.895 22.12 22.12 0.00 6.46
261 288 5.772825 AATAAGAGCTTGAAGCAAACACA 57.227 34.783 20.45 0.00 45.56 3.72
267 294 3.569277 TGCACAAATAAGAGCTTGAAGCA 59.431 39.130 20.45 0.00 45.56 3.91
326 353 8.270030 CCCTATCAATGATATGTATGTGACCAT 58.730 37.037 3.12 0.00 34.97 3.55
341 368 8.553085 TTTTCTCTATCTGTCCCTATCAATGA 57.447 34.615 0.00 0.00 0.00 2.57
392 419 1.670811 GTCGCCCTGTATGATTTGGTG 59.329 52.381 0.00 0.00 0.00 4.17
393 420 1.559682 AGTCGCCCTGTATGATTTGGT 59.440 47.619 0.00 0.00 0.00 3.67
435 462 3.181469 TGTTCATGAACCCTCGTATAGGC 60.181 47.826 30.66 6.53 45.03 3.93
450 525 7.713942 TCCTCAGATTGTTCTCATATGTTCATG 59.286 37.037 1.90 0.00 0.00 3.07
454 529 7.093156 TGACTCCTCAGATTGTTCTCATATGTT 60.093 37.037 1.90 0.00 0.00 2.71
502 577 5.358922 TCTGCAATGGGAAACAAAAGAAAG 58.641 37.500 0.00 0.00 0.00 2.62
883 1008 2.044946 GGGTGGTGATGGTGGAGC 60.045 66.667 0.00 0.00 0.00 4.70
1502 1627 4.072131 CTGACGAAGAGGGGAAAATGAAA 58.928 43.478 0.00 0.00 0.00 2.69
1503 1628 3.326588 TCTGACGAAGAGGGGAAAATGAA 59.673 43.478 0.00 0.00 0.00 2.57
1504 1629 2.903784 TCTGACGAAGAGGGGAAAATGA 59.096 45.455 0.00 0.00 0.00 2.57
1505 1630 3.334583 TCTGACGAAGAGGGGAAAATG 57.665 47.619 0.00 0.00 0.00 2.32
1507 1632 3.055819 CAGATCTGACGAAGAGGGGAAAA 60.056 47.826 18.34 0.00 38.67 2.29
1547 1672 9.451002 CTAATTGATCAGCCATGAAATATCTCT 57.549 33.333 0.00 0.00 39.39 3.10
1548 1673 9.445878 TCTAATTGATCAGCCATGAAATATCTC 57.554 33.333 0.00 0.00 39.39 2.75
2026 2155 2.681848 GCATGCAGTTCAAGCAGATACT 59.318 45.455 14.21 0.00 46.36 2.12
2059 2188 5.186996 TCCTGCAGAAATTCAAACAGAAC 57.813 39.130 17.39 0.00 39.49 3.01
2149 2278 1.349688 AGCCAGTCCGACCATGTTTTA 59.650 47.619 0.00 0.00 0.00 1.52
2155 2284 0.107508 CATTCAGCCAGTCCGACCAT 60.108 55.000 0.00 0.00 0.00 3.55
2311 2440 7.606456 TGTAAAATTGCTCTAGGACCTAAACAG 59.394 37.037 2.08 0.49 0.00 3.16
2337 2466 5.600908 GCAATGAAGATTGTTGCATTGTT 57.399 34.783 13.75 0.00 45.63 2.83
2419 2548 1.549170 AGAACGCGACTGGGACTTAAT 59.451 47.619 15.93 0.00 0.00 1.40
2529 2658 1.538512 CAGTTTGTGGGTCATGAGCAG 59.461 52.381 25.18 2.14 0.00 4.24
2562 2699 3.494048 GCTGCCATGCTCACTATAAGAGT 60.494 47.826 0.00 0.00 39.82 3.24
2583 2720 2.035066 AGTGTGAAATTGACTTGCCAGC 59.965 45.455 0.00 0.00 0.00 4.85
2827 2965 1.990160 TATTTGGTAGCCGGGCCCAG 61.990 60.000 24.92 12.86 0.00 4.45
3201 3360 3.695606 GAGCACCAGAGGTCCGCA 61.696 66.667 0.00 0.00 31.02 5.69
3828 3987 3.066621 TGAAGCCAGTTGTTGTCAATGTC 59.933 43.478 0.00 0.00 35.92 3.06
4042 4202 9.196552 GTGCAGTTTTCAAATTTCTTAATAGCT 57.803 29.630 0.00 0.00 0.00 3.32
4068 4228 3.123621 CAGTACCTTTAGAAAGCAGTGCG 59.876 47.826 10.00 0.00 34.69 5.34
4079 4241 7.540299 CAAGTAGAACCTCTCAGTACCTTTAG 58.460 42.308 0.00 0.00 0.00 1.85
4086 4248 6.360370 AAATGCAAGTAGAACCTCTCAGTA 57.640 37.500 0.00 0.00 0.00 2.74
4322 4529 1.404986 CCTGCGACAAGTAATTCGGGA 60.405 52.381 0.00 0.00 35.73 5.14
4323 4530 1.006832 CCTGCGACAAGTAATTCGGG 58.993 55.000 0.00 0.00 35.73 5.14
4326 4533 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
4329 4536 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
4330 4537 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
4332 4539 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
4334 4541 1.411246 GGTACATCCATACCTGCGACA 59.589 52.381 0.00 0.00 41.38 4.35
4365 4572 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
4366 4573 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
4368 4575 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
4370 4577 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
4374 4581 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
4376 4583 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
4377 4584 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
4380 4587 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
4381 4588 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
4386 4593 1.546923 TCCCAAATTACTCGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
4388 4595 1.001068 TGTCCCAAATTACTCGTCGCA 59.999 47.619 0.00 0.00 0.00 5.10
4389 4596 1.659098 CTGTCCCAAATTACTCGTCGC 59.341 52.381 0.00 0.00 0.00 5.19
4392 4599 2.236395 CCCTCTGTCCCAAATTACTCGT 59.764 50.000 0.00 0.00 0.00 4.18
4393 4600 2.500098 TCCCTCTGTCCCAAATTACTCG 59.500 50.000 0.00 0.00 0.00 4.18
4395 4602 3.532102 ACTCCCTCTGTCCCAAATTACT 58.468 45.455 0.00 0.00 0.00 2.24
4396 4603 5.632034 ATACTCCCTCTGTCCCAAATTAC 57.368 43.478 0.00 0.00 0.00 1.89
4398 4605 9.805204 ATATATATACTCCCTCTGTCCCAAATT 57.195 33.333 0.00 0.00 0.00 1.82
4402 4609 9.480362 AGATATATATATACTCCCTCTGTCCCA 57.520 37.037 5.19 0.00 0.00 4.37
4591 5294 7.534085 TCTTAGTTAATGCCAACGATTACAG 57.466 36.000 0.00 0.00 33.50 2.74
4713 5484 4.353788 TGTTATATTGCAGGCCCTCCTATT 59.646 41.667 0.00 0.00 41.93 1.73
4930 5708 4.808558 TCTAAAAACTTAAGAGCGCGGTA 58.191 39.130 12.41 0.00 0.00 4.02
5099 6230 2.420022 CCATAGCCTTGTTTGAAGACGG 59.580 50.000 0.00 0.00 0.00 4.79
5102 6233 4.365514 TGACCATAGCCTTGTTTGAAGA 57.634 40.909 0.00 0.00 0.00 2.87
5104 6235 4.724399 TCTTGACCATAGCCTTGTTTGAA 58.276 39.130 0.00 0.00 0.00 2.69
5106 6237 6.543465 TCATATCTTGACCATAGCCTTGTTTG 59.457 38.462 0.00 0.00 0.00 2.93
5335 6555 8.184848 CGTATGATGTTATCGATATGTTCCTCT 58.815 37.037 5.84 0.00 0.00 3.69
5762 6982 1.279271 GCCAAGGACATCACCTACACT 59.721 52.381 0.00 0.00 39.62 3.55
5936 7156 4.280019 ACCAACAACTCCGCCCCC 62.280 66.667 0.00 0.00 0.00 5.40
5937 7157 2.671963 GACCAACAACTCCGCCCC 60.672 66.667 0.00 0.00 0.00 5.80
5938 7158 3.047877 CGACCAACAACTCCGCCC 61.048 66.667 0.00 0.00 0.00 6.13
6077 7330 1.315690 CCGCTGCCAAATCAGATGAT 58.684 50.000 0.00 0.00 36.19 2.45
6170 7429 3.918591 CGGACCGGATGTAATCGATTTAG 59.081 47.826 17.19 2.11 46.86 1.85
6182 7441 3.849951 CCAGGGTCGGACCGGATG 61.850 72.222 20.35 17.31 39.83 3.51
6246 7505 2.262774 ATCTCTTCGGGGCCTGCAAG 62.263 60.000 7.74 12.26 0.00 4.01
6266 7525 3.435890 CCCTGGAAACAAACACCCTCTTA 60.436 47.826 0.00 0.00 42.06 2.10
6267 7526 2.666317 CCTGGAAACAAACACCCTCTT 58.334 47.619 0.00 0.00 42.06 2.85
6268 7527 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
6269 7528 1.133606 TCCCTGGAAACAAACACCCTC 60.134 52.381 0.00 0.00 42.06 4.30
6270 7529 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
6272 7531 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
6273 7532 5.585820 TTTAAGTCCCTGGAAACAAACAC 57.414 39.130 0.00 0.00 42.06 3.32
6274 7533 6.607004 TTTTTAAGTCCCTGGAAACAAACA 57.393 33.333 0.00 0.00 42.06 2.83
6294 7553 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
6296 7555 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
6299 7558 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
6300 7559 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
6301 7560 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
6302 7561 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
6304 7563 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
6305 7564 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
6306 7565 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
6308 7567 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
6310 7569 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
6313 7572 4.010349 GTCCCTCCTGTTTGGTTTAGATG 58.990 47.826 0.00 0.00 37.07 2.90
6314 7573 3.916989 AGTCCCTCCTGTTTGGTTTAGAT 59.083 43.478 0.00 0.00 37.07 1.98
6315 7574 3.323775 AGTCCCTCCTGTTTGGTTTAGA 58.676 45.455 0.00 0.00 37.07 2.10
6316 7575 3.790089 AGTCCCTCCTGTTTGGTTTAG 57.210 47.619 0.00 0.00 37.07 1.85
6317 7576 5.853572 ATAAGTCCCTCCTGTTTGGTTTA 57.146 39.130 0.00 0.00 37.07 2.01
6318 7577 4.741928 ATAAGTCCCTCCTGTTTGGTTT 57.258 40.909 0.00 0.00 37.07 3.27
6319 7578 4.227527 CCTATAAGTCCCTCCTGTTTGGTT 59.772 45.833 0.00 0.00 37.07 3.67
6320 7579 3.780850 CCTATAAGTCCCTCCTGTTTGGT 59.219 47.826 0.00 0.00 37.07 3.67
6321 7580 3.136626 CCCTATAAGTCCCTCCTGTTTGG 59.863 52.174 0.00 0.00 37.10 3.28
6322 7581 4.037927 TCCCTATAAGTCCCTCCTGTTTG 58.962 47.826 0.00 0.00 0.00 2.93
6324 7583 3.275228 AGTCCCTATAAGTCCCTCCTGTT 59.725 47.826 0.00 0.00 0.00 3.16
6325 7584 2.866454 AGTCCCTATAAGTCCCTCCTGT 59.134 50.000 0.00 0.00 0.00 4.00
6326 7585 3.621682 AGTCCCTATAAGTCCCTCCTG 57.378 52.381 0.00 0.00 0.00 3.86
6327 7586 5.763239 TTAAGTCCCTATAAGTCCCTCCT 57.237 43.478 0.00 0.00 0.00 3.69
6329 7588 6.183360 CCACTTTAAGTCCCTATAAGTCCCTC 60.183 46.154 0.00 0.00 0.00 4.30
6330 7589 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
6331 7590 5.427806 ACCACTTTAAGTCCCTATAAGTCCC 59.572 44.000 0.00 0.00 0.00 4.46
6332 7591 6.155737 TCACCACTTTAAGTCCCTATAAGTCC 59.844 42.308 0.00 0.00 0.00 3.85
6335 7594 8.893727 CAAATCACCACTTTAAGTCCCTATAAG 58.106 37.037 0.00 0.00 0.00 1.73
6337 7596 7.343357 CCAAATCACCACTTTAAGTCCCTATA 58.657 38.462 0.00 0.00 0.00 1.31
6338 7597 6.187682 CCAAATCACCACTTTAAGTCCCTAT 58.812 40.000 0.00 0.00 0.00 2.57
6339 7598 5.515886 CCCAAATCACCACTTTAAGTCCCTA 60.516 44.000 0.00 0.00 0.00 3.53
6340 7599 4.407365 CCAAATCACCACTTTAAGTCCCT 58.593 43.478 0.00 0.00 0.00 4.20
6342 7601 4.217767 GTCCCAAATCACCACTTTAAGTCC 59.782 45.833 0.00 0.00 0.00 3.85
6345 7604 5.070001 TGAGTCCCAAATCACCACTTTAAG 58.930 41.667 0.00 0.00 0.00 1.85
6346 7605 5.055265 TGAGTCCCAAATCACCACTTTAA 57.945 39.130 0.00 0.00 0.00 1.52
6347 7606 4.715534 TGAGTCCCAAATCACCACTTTA 57.284 40.909 0.00 0.00 0.00 1.85
6348 7607 3.593442 TGAGTCCCAAATCACCACTTT 57.407 42.857 0.00 0.00 0.00 2.66
6350 7609 2.644299 TGATGAGTCCCAAATCACCACT 59.356 45.455 0.00 0.00 0.00 4.00
6352 7611 3.805066 TTGATGAGTCCCAAATCACCA 57.195 42.857 0.00 0.00 30.26 4.17
6353 7612 5.467035 TTTTTGATGAGTCCCAAATCACC 57.533 39.130 8.14 0.00 33.00 4.02
6372 7631 3.977326 AGTTCCTCCCTGAGAGTCTTTTT 59.023 43.478 0.00 0.00 41.47 1.94
6373 7632 3.592865 AGTTCCTCCCTGAGAGTCTTTT 58.407 45.455 0.00 0.00 41.47 2.27
6374 7633 3.268034 AGTTCCTCCCTGAGAGTCTTT 57.732 47.619 0.00 0.00 41.47 2.52
6375 7634 3.268034 AAGTTCCTCCCTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
6376 7635 4.618378 ATAAGTTCCTCCCTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
6377 7636 4.830600 CCTATAAGTTCCTCCCTGAGAGTC 59.169 50.000 0.00 0.00 41.47 3.36
6379 7638 4.140900 TCCCTATAAGTTCCTCCCTGAGAG 60.141 50.000 0.00 0.00 42.83 3.20
6380 7639 3.797845 TCCCTATAAGTTCCTCCCTGAGA 59.202 47.826 0.00 0.00 0.00 3.27
6381 7640 4.200447 TCCCTATAAGTTCCTCCCTGAG 57.800 50.000 0.00 0.00 0.00 3.35
6382 7641 4.852991 ATCCCTATAAGTTCCTCCCTGA 57.147 45.455 0.00 0.00 0.00 3.86
6383 7642 7.901861 ACTATAATCCCTATAAGTTCCTCCCTG 59.098 40.741 0.00 0.00 0.00 4.45
6384 7643 7.901861 CACTATAATCCCTATAAGTTCCTCCCT 59.098 40.741 0.00 0.00 0.00 4.20
6385 7644 7.125963 CCACTATAATCCCTATAAGTTCCTCCC 59.874 44.444 0.00 0.00 0.00 4.30
6386 7645 7.679025 ACCACTATAATCCCTATAAGTTCCTCC 59.321 40.741 0.00 0.00 0.00 4.30
6387 7646 8.532819 CACCACTATAATCCCTATAAGTTCCTC 58.467 40.741 0.00 0.00 0.00 3.71
6388 7647 8.239478 TCACCACTATAATCCCTATAAGTTCCT 58.761 37.037 0.00 0.00 0.00 3.36
6389 7648 8.431910 TCACCACTATAATCCCTATAAGTTCC 57.568 38.462 0.00 0.00 0.00 3.62
6393 7652 9.672673 CCAAATCACCACTATAATCCCTATAAG 57.327 37.037 0.00 0.00 0.00 1.73
6394 7653 8.611257 CCCAAATCACCACTATAATCCCTATAA 58.389 37.037 0.00 0.00 0.00 0.98
6395 7654 7.742213 ACCCAAATCACCACTATAATCCCTATA 59.258 37.037 0.00 0.00 0.00 1.31
6398 7657 4.731929 ACCCAAATCACCACTATAATCCCT 59.268 41.667 0.00 0.00 0.00 4.20
6399 7658 5.061721 ACCCAAATCACCACTATAATCCC 57.938 43.478 0.00 0.00 0.00 3.85
6403 7662 7.338449 GCTAAAAGACCCAAATCACCACTATAA 59.662 37.037 0.00 0.00 0.00 0.98
6404 7663 6.826741 GCTAAAAGACCCAAATCACCACTATA 59.173 38.462 0.00 0.00 0.00 1.31
6406 7665 5.007682 GCTAAAAGACCCAAATCACCACTA 58.992 41.667 0.00 0.00 0.00 2.74
6408 7667 3.572255 TGCTAAAAGACCCAAATCACCAC 59.428 43.478 0.00 0.00 0.00 4.16
6409 7668 3.838565 TGCTAAAAGACCCAAATCACCA 58.161 40.909 0.00 0.00 0.00 4.17
6410 7669 4.220602 ACATGCTAAAAGACCCAAATCACC 59.779 41.667 0.00 0.00 0.00 4.02
6411 7670 5.048083 TGACATGCTAAAAGACCCAAATCAC 60.048 40.000 0.00 0.00 0.00 3.06
6412 7671 5.076182 TGACATGCTAAAAGACCCAAATCA 58.924 37.500 0.00 0.00 0.00 2.57
6413 7672 5.643379 TGACATGCTAAAAGACCCAAATC 57.357 39.130 0.00 0.00 0.00 2.17
6414 7673 6.610075 AATGACATGCTAAAAGACCCAAAT 57.390 33.333 0.00 0.00 0.00 2.32
6415 7674 6.418057 AAATGACATGCTAAAAGACCCAAA 57.582 33.333 0.00 0.00 0.00 3.28
6416 7675 7.531857 TTAAATGACATGCTAAAAGACCCAA 57.468 32.000 0.00 0.00 0.00 4.12
6417 7676 7.716799 ATTAAATGACATGCTAAAAGACCCA 57.283 32.000 0.00 0.00 0.00 4.51
6418 7677 9.516314 GTTATTAAATGACATGCTAAAAGACCC 57.484 33.333 0.00 0.00 0.00 4.46
6419 7678 9.516314 GGTTATTAAATGACATGCTAAAAGACC 57.484 33.333 0.00 0.00 0.00 3.85
6425 7684 9.273016 GCTAGAGGTTATTAAATGACATGCTAA 57.727 33.333 0.00 0.00 0.00 3.09
6426 7685 7.878127 GGCTAGAGGTTATTAAATGACATGCTA 59.122 37.037 0.00 0.00 0.00 3.49
6428 7687 6.072452 GGGCTAGAGGTTATTAAATGACATGC 60.072 42.308 0.00 0.00 0.00 4.06
6429 7688 6.998074 TGGGCTAGAGGTTATTAAATGACATG 59.002 38.462 0.00 0.00 0.00 3.21
6432 7691 7.224297 TCATGGGCTAGAGGTTATTAAATGAC 58.776 38.462 0.00 0.00 0.00 3.06
6433 7692 7.387265 TCATGGGCTAGAGGTTATTAAATGA 57.613 36.000 0.00 0.00 0.00 2.57
6434 7693 9.739276 TTATCATGGGCTAGAGGTTATTAAATG 57.261 33.333 0.00 0.00 0.00 2.32
6439 7698 7.240616 AGGATTTATCATGGGCTAGAGGTTATT 59.759 37.037 0.00 0.00 0.00 1.40
6441 7700 6.013379 CAGGATTTATCATGGGCTAGAGGTTA 60.013 42.308 0.00 0.00 35.15 2.85
6442 7701 4.916424 AGGATTTATCATGGGCTAGAGGTT 59.084 41.667 0.00 0.00 0.00 3.50
6443 7702 4.288105 CAGGATTTATCATGGGCTAGAGGT 59.712 45.833 0.00 0.00 35.15 3.85
6444 7703 4.288105 ACAGGATTTATCATGGGCTAGAGG 59.712 45.833 8.96 0.00 42.42 3.69
6445 7704 5.495926 ACAGGATTTATCATGGGCTAGAG 57.504 43.478 8.96 0.00 42.42 2.43
6446 7705 7.147391 TGTTTACAGGATTTATCATGGGCTAGA 60.147 37.037 8.96 0.00 42.42 2.43
6447 7706 6.998074 TGTTTACAGGATTTATCATGGGCTAG 59.002 38.462 8.96 0.00 42.42 3.42
6448 7707 6.905736 TGTTTACAGGATTTATCATGGGCTA 58.094 36.000 8.96 0.00 42.42 3.93
6450 7709 6.463995 TTGTTTACAGGATTTATCATGGGC 57.536 37.500 8.96 0.00 42.42 5.36
6452 7711 8.915871 CTGTTTGTTTACAGGATTTATCATGG 57.084 34.615 8.96 0.00 42.42 3.66
6464 7723 4.969484 AGTCCCTACCTGTTTGTTTACAG 58.031 43.478 0.00 0.00 44.07 2.74
6465 7724 4.501915 CGAGTCCCTACCTGTTTGTTTACA 60.502 45.833 0.00 0.00 0.00 2.41
6466 7725 3.992427 CGAGTCCCTACCTGTTTGTTTAC 59.008 47.826 0.00 0.00 0.00 2.01
6467 7726 3.007182 CCGAGTCCCTACCTGTTTGTTTA 59.993 47.826 0.00 0.00 0.00 2.01
6468 7727 2.224450 CCGAGTCCCTACCTGTTTGTTT 60.224 50.000 0.00 0.00 0.00 2.83
6470 7729 0.974383 CCGAGTCCCTACCTGTTTGT 59.026 55.000 0.00 0.00 0.00 2.83
6471 7730 0.249398 CCCGAGTCCCTACCTGTTTG 59.751 60.000 0.00 0.00 0.00 2.93
6472 7731 0.115745 TCCCGAGTCCCTACCTGTTT 59.884 55.000 0.00 0.00 0.00 2.83
6473 7732 0.614134 GTCCCGAGTCCCTACCTGTT 60.614 60.000 0.00 0.00 0.00 3.16
6474 7733 1.000107 GTCCCGAGTCCCTACCTGT 60.000 63.158 0.00 0.00 0.00 4.00
6475 7734 0.324460 AAGTCCCGAGTCCCTACCTG 60.324 60.000 0.00 0.00 0.00 4.00
6476 7735 1.302907 TAAGTCCCGAGTCCCTACCT 58.697 55.000 0.00 0.00 0.00 3.08
6478 7737 4.468713 ACTTATAAGTCCCGAGTCCCTAC 58.531 47.826 12.50 0.00 32.86 3.18
6479 7738 4.803329 ACTTATAAGTCCCGAGTCCCTA 57.197 45.455 12.50 0.00 32.86 3.53
6481 7740 3.181468 CCAACTTATAAGTCCCGAGTCCC 60.181 52.174 18.28 0.00 38.57 4.46
6482 7741 3.181468 CCCAACTTATAAGTCCCGAGTCC 60.181 52.174 18.28 0.00 38.57 3.85
6483 7742 3.703052 TCCCAACTTATAAGTCCCGAGTC 59.297 47.826 18.28 0.00 38.57 3.36
6487 7746 4.482952 AAGTCCCAACTTATAAGTCCCG 57.517 45.455 18.28 9.98 43.98 5.14
6488 7747 8.640063 TTTTTAAGTCCCAACTTATAAGTCCC 57.360 34.615 18.28 5.45 45.16 4.46
6515 7774 6.371825 CCTGTTTGTTTCATAAGTCCTAGGAC 59.628 42.308 31.29 31.29 44.86 3.85
6517 7776 5.648092 CCCTGTTTGTTTCATAAGTCCTAGG 59.352 44.000 0.82 0.82 0.00 3.02
6519 7778 5.007682 GCCCTGTTTGTTTCATAAGTCCTA 58.992 41.667 0.00 0.00 0.00 2.94
6520 7779 3.826729 GCCCTGTTTGTTTCATAAGTCCT 59.173 43.478 0.00 0.00 0.00 3.85
6522 7781 3.826729 AGGCCCTGTTTGTTTCATAAGTC 59.173 43.478 0.00 0.00 0.00 3.01
6523 7782 3.844640 AGGCCCTGTTTGTTTCATAAGT 58.155 40.909 0.00 0.00 0.00 2.24
6524 7783 5.622233 GCTTAGGCCCTGTTTGTTTCATAAG 60.622 44.000 0.00 0.00 0.00 1.73
6525 7784 4.219725 GCTTAGGCCCTGTTTGTTTCATAA 59.780 41.667 0.00 0.00 0.00 1.90
6526 7785 3.761752 GCTTAGGCCCTGTTTGTTTCATA 59.238 43.478 0.00 0.00 0.00 2.15
6527 7786 2.562738 GCTTAGGCCCTGTTTGTTTCAT 59.437 45.455 0.00 0.00 0.00 2.57
6528 7787 1.960689 GCTTAGGCCCTGTTTGTTTCA 59.039 47.619 0.00 0.00 0.00 2.69
6529 7788 1.068541 CGCTTAGGCCCTGTTTGTTTC 60.069 52.381 0.00 0.00 34.44 2.78
6530 7789 0.958822 CGCTTAGGCCCTGTTTGTTT 59.041 50.000 0.00 0.00 34.44 2.83
6531 7790 1.524008 GCGCTTAGGCCCTGTTTGTT 61.524 55.000 0.00 0.00 34.44 2.83
6532 7791 1.971695 GCGCTTAGGCCCTGTTTGT 60.972 57.895 0.00 0.00 34.44 2.83
6533 7792 2.877691 GCGCTTAGGCCCTGTTTG 59.122 61.111 0.00 0.00 34.44 2.93
6534 7793 2.746277 CGCGCTTAGGCCCTGTTT 60.746 61.111 5.56 0.00 34.44 2.83
6535 7794 4.778143 CCGCGCTTAGGCCCTGTT 62.778 66.667 5.56 0.00 34.44 3.16
6696 7965 3.015327 GGCTGAAGCATCACAAGAGAAT 58.985 45.455 4.43 0.00 44.36 2.40
7145 8414 7.223387 CCACCAAAGAAAGAAAAGATTGAACAG 59.777 37.037 0.00 0.00 0.00 3.16
7178 8447 4.205587 TCTTCTCTACTAGCCTTTACCCG 58.794 47.826 0.00 0.00 0.00 5.28
7197 8466 0.040204 CAGCCCACCCCATTCTTCTT 59.960 55.000 0.00 0.00 0.00 2.52
7207 8476 1.463674 CATCAGTAAACAGCCCACCC 58.536 55.000 0.00 0.00 0.00 4.61
7300 8569 5.766150 TTAACACAAGTGCAGCTGTTTAT 57.234 34.783 16.64 0.00 0.00 1.40
7321 8590 6.119536 TGTTTGACGCCTCTTATATGGATTT 58.880 36.000 0.00 0.00 0.00 2.17
7454 8741 4.362932 TTGCAAACACGAATTCTTGACA 57.637 36.364 17.97 7.93 0.00 3.58
7457 8744 3.360956 CGCTTTGCAAACACGAATTCTTG 60.361 43.478 19.96 10.20 0.00 3.02
7482 8769 3.932710 CTGTAACGAATGCCACACTACAT 59.067 43.478 0.00 0.00 0.00 2.29
7523 8811 7.337184 AGAGAAACGACAGACAATATCTCAGTA 59.663 37.037 0.00 0.00 34.41 2.74
7570 8858 3.119245 GCATGATGTTGACCTTGAGCATT 60.119 43.478 0.00 0.00 0.00 3.56
7623 8911 3.411446 TCTTGTCGCCACTGATGAAAAT 58.589 40.909 0.00 0.00 0.00 1.82
7669 8957 8.488308 ACCGGGAACTCTAAATATAATACTGT 57.512 34.615 6.32 0.00 0.00 3.55
7670 8958 9.420551 GAACCGGGAACTCTAAATATAATACTG 57.579 37.037 6.32 0.00 0.00 2.74
7672 8960 9.993454 AAGAACCGGGAACTCTAAATATAATAC 57.007 33.333 6.32 0.00 0.00 1.89
7723 9202 1.212751 GGAGGCGGCACAAATTCAC 59.787 57.895 13.08 0.00 0.00 3.18
7734 9213 0.958091 TTGACAAAACATGGAGGCGG 59.042 50.000 0.00 0.00 0.00 6.13
7776 9255 5.391312 AAAGAAATTGATCCCCTCAAACG 57.609 39.130 0.00 0.00 46.62 3.60
7819 9298 9.990360 TGTACTAACTTGACAGTTGATGAATAA 57.010 29.630 0.00 0.00 43.54 1.40
7893 10103 2.708051 CTCCAGTGGTAGTAGTCGTCA 58.292 52.381 9.54 0.00 0.00 4.35
7896 10106 0.377554 CGCTCCAGTGGTAGTAGTCG 59.622 60.000 9.54 3.88 0.00 4.18
7905 10115 3.997064 CTTCGGCTCGCTCCAGTGG 62.997 68.421 1.40 1.40 0.00 4.00
7939 10149 0.976073 GTTCCGATGAGGGAGGGACA 60.976 60.000 0.00 0.00 41.52 4.02
7941 10151 1.382695 GGTTCCGATGAGGGAGGGA 60.383 63.158 0.00 0.00 41.52 4.20
7946 10156 0.036765 TTTGTCGGTTCCGATGAGGG 60.037 55.000 16.87 0.00 40.65 4.30
7951 10161 3.622166 ATAAGGTTTGTCGGTTCCGAT 57.378 42.857 16.87 2.19 40.65 4.18
7957 10167 6.015180 TGTCTACTACAATAAGGTTTGTCGGT 60.015 38.462 0.00 0.00 40.25 4.69
7961 10171 7.548075 CCGAATGTCTACTACAATAAGGTTTGT 59.452 37.037 0.00 0.00 42.70 2.83
7967 10178 7.490000 ACTTCCCGAATGTCTACTACAATAAG 58.510 38.462 0.00 0.00 42.70 1.73
7970 10181 5.450137 CGACTTCCCGAATGTCTACTACAAT 60.450 44.000 0.00 0.00 42.70 2.71
7983 10194 1.236616 TAGCACGACGACTTCCCGAA 61.237 55.000 0.00 0.00 0.00 4.30
8020 10231 1.766176 CGATTGTTGTTTTGGCGCG 59.234 52.632 0.00 0.00 0.00 6.86
8023 10234 1.885814 GCGGCGATTGTTGTTTTGGC 61.886 55.000 12.98 0.00 0.00 4.52
8027 10238 2.254051 CGGCGGCGATTGTTGTTT 59.746 55.556 29.19 0.00 0.00 2.83
8035 10246 4.554363 CTCTTCGTCGGCGGCGAT 62.554 66.667 37.48 0.00 38.21 4.58
8039 10250 1.801913 CACTTCTCTTCGTCGGCGG 60.802 63.158 10.62 0.00 38.89 6.13
8046 10257 5.355630 TCCTTCTGATCTACACTTCTCTTCG 59.644 44.000 0.00 0.00 0.00 3.79
8079 10290 6.421501 TCGTTTGTCTGTATTCGTGTGTTTAT 59.578 34.615 0.00 0.00 0.00 1.40
8082 10293 4.114073 TCGTTTGTCTGTATTCGTGTGTT 58.886 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.