Multiple sequence alignment - TraesCS5D01G157900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G157900 chr5D 100.000 5744 0 0 1 5744 246003838 246009581 0.000000e+00 10608.0
1 TraesCS5D01G157900 chr5D 100.000 107 0 0 1 107 245996138 245996244 1.260000e-46 198.0
2 TraesCS5D01G157900 chr5A 91.487 1997 86 26 2786 4739 329989094 329991049 0.000000e+00 2669.0
3 TraesCS5D01G157900 chr5A 91.707 1447 84 16 394 1818 329986692 329988124 0.000000e+00 1975.0
4 TraesCS5D01G157900 chr5A 93.415 820 37 9 1816 2628 329988247 329989056 0.000000e+00 1199.0
5 TraesCS5D01G157900 chr5A 91.629 657 36 7 5094 5744 329991389 329992032 0.000000e+00 891.0
6 TraesCS5D01G157900 chr5A 93.605 172 10 1 1 172 329986470 329986640 7.390000e-64 255.0
7 TraesCS5D01G157900 chr5A 87.500 200 22 3 4914 5113 329991114 329991310 1.610000e-55 228.0
8 TraesCS5D01G157900 chr5B 92.695 1848 67 30 2907 4730 280600516 280602319 0.000000e+00 2603.0
9 TraesCS5D01G157900 chr5B 93.864 1092 50 9 1837 2924 280599382 280600460 0.000000e+00 1629.0
10 TraesCS5D01G157900 chr5B 89.222 1234 72 23 647 1848 280598147 280599351 0.000000e+00 1485.0
11 TraesCS5D01G157900 chr5B 91.758 364 28 2 1 363 280597521 280597883 6.640000e-139 505.0
12 TraesCS5D01G157900 chr5B 90.323 217 20 1 5528 5744 280647046 280647261 3.390000e-72 283.0
13 TraesCS5D01G157900 chr5B 79.657 408 63 14 6 395 418803965 418803560 5.670000e-70 276.0
14 TraesCS5D01G157900 chr5B 86.512 215 22 1 5345 5559 280646834 280647041 4.480000e-56 230.0
15 TraesCS5D01G157900 chr3D 81.471 367 54 8 8 363 496727734 496728097 7.280000e-74 289.0
16 TraesCS5D01G157900 chr3D 79.396 364 64 8 13 366 467498539 467498177 4.450000e-61 246.0
17 TraesCS5D01G157900 chr3D 88.485 165 17 2 5503 5666 322435285 322435448 1.260000e-46 198.0
18 TraesCS5D01G157900 chr3B 82.639 288 39 5 8 285 655841633 655841919 1.600000e-60 244.0
19 TraesCS5D01G157900 chr3B 94.595 148 7 1 4740 4886 507302993 507302846 1.610000e-55 228.0
20 TraesCS5D01G157900 chr7D 95.425 153 4 3 4734 4885 93883542 93883392 2.070000e-59 241.0
21 TraesCS5D01G157900 chr7D 77.258 299 52 13 8 292 588152800 588152504 1.660000e-35 161.0
22 TraesCS5D01G157900 chr1D 96.552 145 4 1 4743 4886 468747352 468747496 7.440000e-59 239.0
23 TraesCS5D01G157900 chr3A 96.528 144 4 1 4743 4885 687616272 687616129 2.680000e-58 237.0
24 TraesCS5D01G157900 chr3A 95.890 146 5 1 4742 4886 737387772 737387917 9.620000e-58 235.0
25 TraesCS5D01G157900 chr3A 95.833 144 5 1 4743 4885 716803131 716802988 1.240000e-56 231.0
26 TraesCS5D01G157900 chr3A 90.196 153 15 0 5509 5661 582283215 582283367 3.510000e-47 200.0
27 TraesCS5D01G157900 chr3A 78.151 238 36 11 129 363 425377558 425377334 2.790000e-28 137.0
28 TraesCS5D01G157900 chr2A 96.479 142 4 1 4745 4885 594654219 594654360 3.460000e-57 233.0
29 TraesCS5D01G157900 chr2A 77.143 350 64 13 27 364 566453662 566454007 7.600000e-44 189.0
30 TraesCS5D01G157900 chr2B 95.205 146 6 1 4743 4887 615332317 615332462 4.480000e-56 230.0
31 TraesCS5D01G157900 chr2B 89.130 46 5 0 4522 4567 64949370 64949325 2.240000e-04 58.4
32 TraesCS5D01G157900 chr7A 95.105 143 6 1 4742 4883 650914161 650914303 2.080000e-54 224.0
33 TraesCS5D01G157900 chr7A 77.907 344 61 11 31 364 265935800 265936138 3.510000e-47 200.0
34 TraesCS5D01G157900 chr7B 78.100 379 61 12 2 366 163488766 163489136 2.690000e-53 220.0
35 TraesCS5D01G157900 chr1B 88.636 176 13 6 5514 5684 632021073 632020900 2.100000e-49 207.0
36 TraesCS5D01G157900 chr4D 90.000 160 15 1 5502 5661 296729552 296729394 7.540000e-49 206.0
37 TraesCS5D01G157900 chr1A 90.323 155 14 1 5508 5661 155857705 155857859 9.760000e-48 202.0
38 TraesCS5D01G157900 chr4B 89.809 157 14 2 5504 5658 146469209 146469365 3.510000e-47 200.0
39 TraesCS5D01G157900 chr4A 88.415 164 18 1 5502 5665 514080170 514080008 4.540000e-46 196.0
40 TraesCS5D01G157900 chr6B 81.818 99 13 4 4929 5025 34088072 34087977 1.720000e-10 78.7
41 TraesCS5D01G157900 chr6B 92.683 41 0 3 362 401 655273533 655273495 8.040000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G157900 chr5D 246003838 246009581 5743 False 10608.000000 10608 100.000000 1 5744 1 chr5D.!!$F2 5743
1 TraesCS5D01G157900 chr5A 329986470 329992032 5562 False 1202.833333 2669 91.557167 1 5744 6 chr5A.!!$F1 5743
2 TraesCS5D01G157900 chr5B 280597521 280602319 4798 False 1555.500000 2603 91.884750 1 4730 4 chr5B.!!$F1 4729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 624 0.037975 TCCGTACTCCCGCAAAGTTC 60.038 55.0 0.0 0.0 0.00 3.01 F
698 741 0.608130 TGTCATCTTCCCGTGGACAG 59.392 55.0 0.0 0.0 33.88 3.51 F
1510 1584 0.969894 CCTCGGTGAAGAAGGTGAGT 59.030 55.0 0.0 0.0 0.00 3.41 F
1904 2121 0.317770 ATTGCACGCCGTTGTCTTTG 60.318 50.0 0.0 0.0 0.00 2.77 F
3631 3958 0.040514 TGATTGGCGAAACTGCAACG 60.041 50.0 0.0 0.0 36.28 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1607 0.462047 CCACCATGACCGCTTCCTAC 60.462 60.000 0.00 0.00 0.00 3.18 R
1540 1615 1.000717 GAACCAAAACCACCATGACCG 60.001 52.381 0.00 0.00 0.00 4.79 R
2848 3082 1.945394 CATCCCTTGTACATCAGCTGC 59.055 52.381 9.47 0.00 0.00 5.25 R
3681 4008 0.311790 CAGCAGAACATTGTTGCGGT 59.688 50.000 6.80 0.35 42.47 5.68 R
4815 5168 0.032130 AGGCCGTACATGCGTATGAG 59.968 55.000 20.86 10.35 36.84 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.320771 GGCAACATCGTCTCCACACT 60.321 55.000 0.00 0.00 0.00 3.55
126 127 6.059484 TGGATGATGTGTATGTCGTAGAGTA 58.941 40.000 0.00 0.00 36.95 2.59
133 134 6.973843 TGTGTATGTCGTAGAGTACTTTTGT 58.026 36.000 0.00 0.00 36.95 2.83
165 166 4.041917 ATGCACGTGCCGCCAAAG 62.042 61.111 35.72 0.00 41.18 2.77
200 201 3.674997 TGAGTTCATGCCTACAAAGTCC 58.325 45.455 0.00 0.00 0.00 3.85
203 204 0.323302 TCATGCCTACAAAGTCCGCA 59.677 50.000 0.00 0.00 0.00 5.69
210 211 0.883153 TACAAAGTCCGCAGCTACGA 59.117 50.000 8.21 0.00 34.06 3.43
215 216 2.092882 GTCCGCAGCTACGACCAAC 61.093 63.158 8.21 0.00 34.06 3.77
223 224 0.378257 GCTACGACCAACCATGCATG 59.622 55.000 20.19 20.19 0.00 4.06
254 256 1.290130 TCCTCCTTCACCTAGTACCCC 59.710 57.143 0.00 0.00 0.00 4.95
280 282 5.289675 CCATCGTGCTTACTCTAGAAAACAG 59.710 44.000 0.00 0.00 0.00 3.16
287 289 6.765989 TGCTTACTCTAGAAAACAGCAAGAAA 59.234 34.615 11.32 0.00 32.96 2.52
322 324 4.145876 TCAATGACATTTGAGCGAACAC 57.854 40.909 0.00 0.00 32.07 3.32
326 328 0.593128 ACATTTGAGCGAACACCTGC 59.407 50.000 0.00 0.00 0.00 4.85
363 365 0.683179 ATGGATGTCGTCGACAGGGA 60.683 55.000 29.78 17.32 46.04 4.20
445 487 4.208686 GCGGCCGGAGAGGTACAG 62.209 72.222 29.38 0.00 43.70 2.74
446 488 4.208686 CGGCCGGAGAGGTACAGC 62.209 72.222 20.10 0.00 43.70 4.40
543 585 1.208052 AGTGAGTCGGGGATGTCAATG 59.792 52.381 0.00 0.00 0.00 2.82
553 595 6.014012 TCGGGGATGTCAATGTACTATATGA 58.986 40.000 0.00 0.00 0.00 2.15
575 617 2.330745 GACGATCCGTACTCCCGC 59.669 66.667 0.00 0.00 41.37 6.13
582 624 0.037975 TCCGTACTCCCGCAAAGTTC 60.038 55.000 0.00 0.00 0.00 3.01
595 637 2.286950 GCAAAGTTCATCACTGTTCGCA 60.287 45.455 0.00 0.00 35.12 5.10
656 699 5.712446 TGATTTGGGATCAACGTTGGAAATA 59.288 36.000 27.02 8.77 31.78 1.40
667 710 3.134081 ACGTTGGAAATACCCGAGATGAT 59.866 43.478 0.00 0.00 38.00 2.45
677 720 3.366396 ACCCGAGATGATGAGTACAACT 58.634 45.455 0.00 0.00 0.00 3.16
685 728 7.536964 CGAGATGATGAGTACAACTATGTCATC 59.463 40.741 10.52 10.52 41.05 2.92
698 741 0.608130 TGTCATCTTCCCGTGGACAG 59.392 55.000 0.00 0.00 33.88 3.51
719 762 4.917415 CAGTGATTTGATTCCGGTGAAAAC 59.083 41.667 0.00 0.00 33.32 2.43
747 790 1.538047 ATCACTGCGCAATTTCAGGT 58.462 45.000 13.05 0.00 34.76 4.00
1081 1140 3.245948 ACTCCTCTCCTTCTCCACATTCT 60.246 47.826 0.00 0.00 0.00 2.40
1082 1141 3.774216 CTCCTCTCCTTCTCCACATTCTT 59.226 47.826 0.00 0.00 0.00 2.52
1090 1149 1.159285 CTCCACATTCTTTGAGCGCA 58.841 50.000 11.47 0.00 0.00 6.09
1093 1152 2.162208 TCCACATTCTTTGAGCGCATTC 59.838 45.455 11.47 0.00 0.00 2.67
1094 1153 2.523015 CACATTCTTTGAGCGCATTCC 58.477 47.619 11.47 0.00 0.00 3.01
1132 1192 1.374560 CTCTCGAGACACAGATCCGT 58.625 55.000 12.08 0.00 0.00 4.69
1204 1264 1.941668 GCTGCTCCACTCACCTTGTAC 60.942 57.143 0.00 0.00 0.00 2.90
1205 1265 1.620819 CTGCTCCACTCACCTTGTACT 59.379 52.381 0.00 0.00 0.00 2.73
1266 1327 2.665185 GGAACGCCGTGTGCTTCT 60.665 61.111 0.00 0.00 38.05 2.85
1308 1369 4.696479 AGCTTTAGGTGCTGCTATATGT 57.304 40.909 0.00 0.00 39.56 2.29
1310 1371 6.174720 AGCTTTAGGTGCTGCTATATGTAA 57.825 37.500 0.00 0.00 39.56 2.41
1311 1372 6.773638 AGCTTTAGGTGCTGCTATATGTAAT 58.226 36.000 0.00 0.00 39.56 1.89
1341 1402 2.752903 TCTTTGCCCTCCTTTTTATCGC 59.247 45.455 0.00 0.00 0.00 4.58
1374 1448 6.492429 TCTGCTCTTACTGTCTTTTACTACCA 59.508 38.462 0.00 0.00 0.00 3.25
1399 1473 3.073735 AGAGCTGCCTGGACTCCG 61.074 66.667 0.00 0.00 0.00 4.63
1510 1584 0.969894 CCTCGGTGAAGAAGGTGAGT 59.030 55.000 0.00 0.00 0.00 3.41
1532 1607 2.102578 GGATTTCCCATGGGTTGTGAG 58.897 52.381 30.28 2.85 36.47 3.51
1540 1615 2.359900 CATGGGTTGTGAGTAGGAAGC 58.640 52.381 0.00 0.00 0.00 3.86
1550 1625 0.537188 AGTAGGAAGCGGTCATGGTG 59.463 55.000 0.00 0.00 0.00 4.17
1553 1628 1.303317 GGAAGCGGTCATGGTGGTT 60.303 57.895 0.00 0.00 0.00 3.67
1583 1658 1.608590 GTGGAACAGTGGTTGACCATG 59.391 52.381 6.09 8.26 42.67 3.66
1584 1659 4.217588 GTGGAACAGTGGTTGACCATGC 62.218 54.545 6.09 0.00 42.67 4.06
1637 1714 2.928757 CCATGAGTTTCAGAGAAGAGCG 59.071 50.000 0.00 0.00 0.00 5.03
1729 1806 4.083590 GCCTGATCTGTTCTTGTTCTTGTC 60.084 45.833 0.00 0.00 0.00 3.18
1730 1807 4.453819 CCTGATCTGTTCTTGTTCTTGTCC 59.546 45.833 0.00 0.00 0.00 4.02
1731 1808 5.296151 TGATCTGTTCTTGTTCTTGTCCT 57.704 39.130 0.00 0.00 0.00 3.85
1732 1809 5.684704 TGATCTGTTCTTGTTCTTGTCCTT 58.315 37.500 0.00 0.00 0.00 3.36
1733 1810 5.528690 TGATCTGTTCTTGTTCTTGTCCTTG 59.471 40.000 0.00 0.00 0.00 3.61
1734 1811 4.843728 TCTGTTCTTGTTCTTGTCCTTGT 58.156 39.130 0.00 0.00 0.00 3.16
1820 1905 9.448438 TCATTTGCAAGTAGTTATCTTGTATGT 57.552 29.630 0.00 0.00 42.67 2.29
1848 2065 9.538508 TCATTAGTCATGATTAAGTCACTCATG 57.461 33.333 14.95 8.95 44.85 3.07
1890 2107 4.787135 TCAAGGGGTACATGATATTGCA 57.213 40.909 0.00 0.00 0.00 4.08
1904 2121 0.317770 ATTGCACGCCGTTGTCTTTG 60.318 50.000 0.00 0.00 0.00 2.77
1914 2131 4.085822 CGCCGTTGTCTTTGTTTATTTGTG 60.086 41.667 0.00 0.00 0.00 3.33
1917 2134 4.800993 CGTTGTCTTTGTTTATTTGTGGCA 59.199 37.500 0.00 0.00 0.00 4.92
1942 2159 3.773560 TGGATTTACAAGTCAAAGGGGG 58.226 45.455 0.00 0.00 0.00 5.40
1943 2160 3.399644 TGGATTTACAAGTCAAAGGGGGA 59.600 43.478 0.00 0.00 0.00 4.81
1966 2187 7.202011 GGGACTAGAAGAAGCCATGACTATTAA 60.202 40.741 0.00 0.00 0.00 1.40
1967 2188 7.870445 GGACTAGAAGAAGCCATGACTATTAAG 59.130 40.741 0.00 0.00 0.00 1.85
1968 2189 8.312669 ACTAGAAGAAGCCATGACTATTAAGT 57.687 34.615 0.00 0.00 39.21 2.24
1969 2190 9.422681 ACTAGAAGAAGCCATGACTATTAAGTA 57.577 33.333 0.00 0.00 35.56 2.24
2010 2231 5.301805 GCTAGATGTCTTTCTAGAGGAAGCT 59.698 44.000 11.65 0.00 45.37 3.74
2011 2232 6.488683 GCTAGATGTCTTTCTAGAGGAAGCTA 59.511 42.308 11.65 0.58 45.37 3.32
2012 2233 6.959639 AGATGTCTTTCTAGAGGAAGCTAG 57.040 41.667 0.00 0.00 39.35 3.42
2051 2272 6.285224 TGGAATATTTAGGATACGTGTGTGG 58.715 40.000 0.00 0.00 46.39 4.17
2130 2354 8.477419 TCCAAAAATATTACCTTCATGGATCC 57.523 34.615 4.20 4.20 39.71 3.36
2150 2374 2.383855 CAGTCCTTCAGGTCTAGGGAG 58.616 57.143 0.00 0.00 32.39 4.30
2220 2444 4.690184 TTTCTGCAGTGCTTGATACATG 57.310 40.909 17.60 0.00 0.00 3.21
2380 2607 4.072131 TCTAACTGATGGAAGGCAACAAC 58.928 43.478 0.00 0.00 41.41 3.32
2381 2608 2.664402 ACTGATGGAAGGCAACAACT 57.336 45.000 0.00 0.00 41.41 3.16
2584 2811 8.371699 CCTTACAATCTTTTCCCCACAAAATAA 58.628 33.333 0.00 0.00 0.00 1.40
2585 2812 9.771534 CTTACAATCTTTTCCCCACAAAATAAA 57.228 29.630 0.00 0.00 0.00 1.40
2635 2867 9.724839 TTTGAATCTTTCGGTAAACTTTTACTG 57.275 29.630 12.67 12.67 46.46 2.74
2731 2965 7.951530 ACAAACAAGAAAGATTTAGCATTGG 57.048 32.000 0.00 0.00 0.00 3.16
2737 2971 7.613022 ACAAGAAAGATTTAGCATTGGAGATCA 59.387 33.333 0.00 0.00 0.00 2.92
2745 2979 8.929260 ATTTAGCATTGGAGATCATGTGATTA 57.071 30.769 0.00 0.00 34.37 1.75
2746 2980 7.974482 TTAGCATTGGAGATCATGTGATTAG 57.026 36.000 0.00 0.00 34.37 1.73
2750 2984 7.660617 AGCATTGGAGATCATGTGATTAGTAAG 59.339 37.037 0.00 0.00 34.37 2.34
2829 3063 9.150348 CACTAAAAATAGGTTAAAGGCAAATGG 57.850 33.333 0.00 0.00 0.00 3.16
2848 3082 7.169645 GCAAATGGCAAACATAAGTATACATGG 59.830 37.037 5.50 0.00 43.97 3.66
3093 3402 2.961741 CCTCTAAGGCTACTGATCAGCA 59.038 50.000 22.83 9.25 40.95 4.41
3139 3463 0.657368 CGCAAGCTGAAACCAACGAC 60.657 55.000 0.00 0.00 0.00 4.34
3162 3486 1.131638 TCTTCTGTGCTTCACTGGGT 58.868 50.000 4.45 0.00 35.11 4.51
3203 3527 2.669569 GAGCGCTTGGCCTTGTGA 60.670 61.111 13.26 0.00 45.17 3.58
3346 3670 5.581126 TTACCTGAAGCTAAAATGCCATG 57.419 39.130 0.00 0.00 0.00 3.66
3585 3909 1.486211 AAGAATGGTCGGATCGGTCT 58.514 50.000 0.00 0.00 0.00 3.85
3626 3953 3.471495 GGTAACTGATTGGCGAAACTG 57.529 47.619 0.00 0.00 0.00 3.16
3631 3958 0.040514 TGATTGGCGAAACTGCAACG 60.041 50.000 0.00 0.00 36.28 4.10
3652 3979 4.097892 ACGGTGCTCAATTTCTTTCAACTT 59.902 37.500 0.00 0.00 0.00 2.66
3653 3980 4.676924 CGGTGCTCAATTTCTTTCAACTTC 59.323 41.667 0.00 0.00 0.00 3.01
3654 3981 5.506317 CGGTGCTCAATTTCTTTCAACTTCT 60.506 40.000 0.00 0.00 0.00 2.85
3657 3984 6.197842 GTGCTCAATTTCTTTCAACTTCTGTG 59.802 38.462 0.00 0.00 0.00 3.66
3665 3992 3.552132 TTCAACTTCTGTGGTACTGCA 57.448 42.857 0.00 0.00 0.00 4.41
3666 3993 3.769739 TCAACTTCTGTGGTACTGCAT 57.230 42.857 0.00 0.00 0.00 3.96
3667 3994 4.882842 TCAACTTCTGTGGTACTGCATA 57.117 40.909 0.00 0.00 0.00 3.14
3669 3996 5.237815 TCAACTTCTGTGGTACTGCATAAG 58.762 41.667 11.00 11.00 0.00 1.73
3670 3997 4.891992 ACTTCTGTGGTACTGCATAAGT 57.108 40.909 11.86 11.86 43.40 2.24
3672 3999 5.967088 ACTTCTGTGGTACTGCATAAGTAG 58.033 41.667 14.31 5.32 42.15 2.57
3673 4000 5.715279 ACTTCTGTGGTACTGCATAAGTAGA 59.285 40.000 14.31 0.00 42.15 2.59
3676 4003 5.127194 TCTGTGGTACTGCATAAGTAGAAGG 59.873 44.000 0.00 0.00 42.15 3.46
3677 4004 4.120589 GTGGTACTGCATAAGTAGAAGGC 58.879 47.826 0.00 0.00 42.15 4.35
3679 4006 3.067742 GGTACTGCATAAGTAGAAGGCGA 59.932 47.826 0.00 0.00 42.15 5.54
3680 4007 3.887621 ACTGCATAAGTAGAAGGCGAA 57.112 42.857 0.00 0.00 37.36 4.70
3681 4008 4.202245 ACTGCATAAGTAGAAGGCGAAA 57.798 40.909 0.00 0.00 37.36 3.46
3682 4009 3.933332 ACTGCATAAGTAGAAGGCGAAAC 59.067 43.478 0.00 0.00 37.36 2.78
3683 4010 3.267483 TGCATAAGTAGAAGGCGAAACC 58.733 45.455 0.00 0.00 39.61 3.27
3684 4011 2.284417 GCATAAGTAGAAGGCGAAACCG 59.716 50.000 0.00 0.00 46.52 4.44
3696 4023 2.399396 CGAAACCGCAACAATGTTCT 57.601 45.000 0.00 0.00 0.00 3.01
3697 4024 2.043411 CGAAACCGCAACAATGTTCTG 58.957 47.619 0.00 0.00 0.00 3.02
3698 4025 1.786579 GAAACCGCAACAATGTTCTGC 59.213 47.619 0.00 0.00 0.00 4.26
3712 4039 2.366590 TGTTCTGCTGTCTGTGTCTGAT 59.633 45.455 0.00 0.00 0.00 2.90
3727 4054 5.167845 GTGTCTGATCAACTCTTCCTCTTC 58.832 45.833 0.00 0.00 0.00 2.87
3838 4165 2.413837 GTGTTTGAGTACGCTCCATGT 58.586 47.619 0.00 0.00 40.95 3.21
3906 4237 3.998913 TCTGAACACCTTCCATATGCA 57.001 42.857 0.00 0.00 0.00 3.96
3907 4238 3.877559 TCTGAACACCTTCCATATGCAG 58.122 45.455 0.00 0.00 0.00 4.41
3908 4239 3.519107 TCTGAACACCTTCCATATGCAGA 59.481 43.478 0.00 0.00 0.00 4.26
3909 4240 4.164796 TCTGAACACCTTCCATATGCAGAT 59.835 41.667 0.00 0.00 0.00 2.90
3910 4241 5.366477 TCTGAACACCTTCCATATGCAGATA 59.634 40.000 0.00 0.00 0.00 1.98
3911 4242 6.043590 TCTGAACACCTTCCATATGCAGATAT 59.956 38.462 0.00 0.00 0.00 1.63
3912 4243 5.999600 TGAACACCTTCCATATGCAGATATG 59.000 40.000 0.00 0.00 40.85 1.78
3913 4244 5.830799 ACACCTTCCATATGCAGATATGA 57.169 39.130 8.59 0.00 42.96 2.15
3918 4249 6.657966 ACCTTCCATATGCAGATATGATGTTG 59.342 38.462 8.59 0.00 42.96 3.33
3925 4256 3.940852 TGCAGATATGATGTTGTCGCTTT 59.059 39.130 0.00 0.00 0.00 3.51
3968 4299 1.269723 GTGACGCTCATCCGATCCATA 59.730 52.381 0.00 0.00 0.00 2.74
4106 4437 4.019321 CCAAGAACCCTAAACTCCTCATCA 60.019 45.833 0.00 0.00 0.00 3.07
4130 4461 3.906718 CTCACCGAGGACTACGCT 58.093 61.111 0.00 0.00 0.00 5.07
4142 4473 0.388649 ACTACGCTGCCAAGTTCTCG 60.389 55.000 0.00 0.00 0.00 4.04
4172 4503 1.446272 CTGGAAGGACGACGAAGCC 60.446 63.158 0.00 0.00 0.00 4.35
4520 4854 1.047034 CGACCCCGAGGAATAACCCT 61.047 60.000 0.00 0.00 40.05 4.34
4532 4866 1.571773 ATAACCCTCTGTGGTGGGCC 61.572 60.000 0.00 0.00 47.00 5.80
4553 4887 1.680735 GAGCTCGAGATCATGTCCACT 59.319 52.381 25.07 3.66 0.00 4.00
4668 5020 2.290896 TGGTACATCCTTTTGGCCTCAG 60.291 50.000 3.32 0.00 40.12 3.35
4751 5104 8.268850 AGTAATTATCATTTGACGAAACTGCT 57.731 30.769 0.00 0.00 0.00 4.24
4752 5105 8.391106 AGTAATTATCATTTGACGAAACTGCTC 58.609 33.333 0.00 0.00 0.00 4.26
4753 5106 5.545658 TTATCATTTGACGAAACTGCTCC 57.454 39.130 0.00 0.00 0.00 4.70
4754 5107 2.844946 TCATTTGACGAAACTGCTCCA 58.155 42.857 0.00 0.00 0.00 3.86
4755 5108 3.411446 TCATTTGACGAAACTGCTCCAT 58.589 40.909 0.00 0.00 0.00 3.41
4756 5109 3.189080 TCATTTGACGAAACTGCTCCATG 59.811 43.478 0.00 0.00 0.00 3.66
4757 5110 1.522668 TTGACGAAACTGCTCCATGG 58.477 50.000 4.97 4.97 0.00 3.66
4758 5111 0.684535 TGACGAAACTGCTCCATGGA 59.315 50.000 15.27 15.27 0.00 3.41
4759 5112 1.079503 GACGAAACTGCTCCATGGAC 58.920 55.000 11.44 8.83 0.00 4.02
4760 5113 0.670546 ACGAAACTGCTCCATGGACG 60.671 55.000 11.44 13.61 0.00 4.79
4761 5114 0.389817 CGAAACTGCTCCATGGACGA 60.390 55.000 11.44 0.00 0.00 4.20
4762 5115 1.740380 CGAAACTGCTCCATGGACGAT 60.740 52.381 11.44 0.00 0.00 3.73
4763 5116 2.481276 CGAAACTGCTCCATGGACGATA 60.481 50.000 11.44 0.00 0.00 2.92
4764 5117 2.604046 AACTGCTCCATGGACGATAC 57.396 50.000 11.44 0.00 0.00 2.24
4765 5118 1.781786 ACTGCTCCATGGACGATACT 58.218 50.000 11.44 0.00 0.00 2.12
4766 5119 1.410517 ACTGCTCCATGGACGATACTG 59.589 52.381 11.44 0.00 0.00 2.74
4767 5120 0.752658 TGCTCCATGGACGATACTGG 59.247 55.000 11.44 0.00 0.00 4.00
4768 5121 0.601311 GCTCCATGGACGATACTGGC 60.601 60.000 11.44 6.46 0.00 4.85
4769 5122 0.319040 CTCCATGGACGATACTGGCG 60.319 60.000 11.44 0.00 0.00 5.69
4770 5123 1.956170 CCATGGACGATACTGGCGC 60.956 63.158 5.56 0.00 0.00 6.53
4771 5124 1.956170 CATGGACGATACTGGCGCC 60.956 63.158 22.73 22.73 0.00 6.53
4772 5125 3.165160 ATGGACGATACTGGCGCCC 62.165 63.158 26.77 6.80 0.00 6.13
4773 5126 4.944372 GGACGATACTGGCGCCCG 62.944 72.222 26.77 21.78 0.00 6.13
4797 5150 5.083136 GTGTGCACGATATGTAAATCCAG 57.917 43.478 13.13 0.00 0.00 3.86
4798 5151 3.559655 TGTGCACGATATGTAAATCCAGC 59.440 43.478 13.13 0.00 0.00 4.85
4799 5152 2.799978 TGCACGATATGTAAATCCAGCG 59.200 45.455 0.00 0.00 0.00 5.18
4800 5153 2.800544 GCACGATATGTAAATCCAGCGT 59.199 45.455 0.00 0.00 0.00 5.07
4801 5154 3.120991 GCACGATATGTAAATCCAGCGTC 60.121 47.826 0.00 0.00 0.00 5.19
4802 5155 3.428870 CACGATATGTAAATCCAGCGTCC 59.571 47.826 0.00 0.00 0.00 4.79
4803 5156 3.321111 ACGATATGTAAATCCAGCGTCCT 59.679 43.478 0.00 0.00 0.00 3.85
4804 5157 3.675225 CGATATGTAAATCCAGCGTCCTG 59.325 47.826 0.00 0.00 38.85 3.86
4805 5158 4.632153 GATATGTAAATCCAGCGTCCTGT 58.368 43.478 0.00 0.00 37.38 4.00
4806 5159 2.093306 TGTAAATCCAGCGTCCTGTG 57.907 50.000 0.00 0.00 37.38 3.66
4807 5160 1.346395 TGTAAATCCAGCGTCCTGTGT 59.654 47.619 0.00 0.00 37.38 3.72
4808 5161 2.224426 TGTAAATCCAGCGTCCTGTGTT 60.224 45.455 0.00 0.00 37.38 3.32
4809 5162 1.238439 AAATCCAGCGTCCTGTGTTG 58.762 50.000 0.00 0.00 37.38 3.33
4810 5163 0.108585 AATCCAGCGTCCTGTGTTGT 59.891 50.000 0.00 0.00 37.38 3.32
4811 5164 0.108585 ATCCAGCGTCCTGTGTTGTT 59.891 50.000 0.00 0.00 37.38 2.83
4812 5165 0.107410 TCCAGCGTCCTGTGTTGTTT 60.107 50.000 0.00 0.00 37.38 2.83
4813 5166 0.307760 CCAGCGTCCTGTGTTGTTTC 59.692 55.000 0.00 0.00 37.38 2.78
4814 5167 1.013596 CAGCGTCCTGTGTTGTTTCA 58.986 50.000 0.00 0.00 34.31 2.69
4815 5168 1.014352 AGCGTCCTGTGTTGTTTCAC 58.986 50.000 0.00 0.00 38.63 3.18
4816 5169 1.014352 GCGTCCTGTGTTGTTTCACT 58.986 50.000 0.00 0.00 38.90 3.41
4817 5170 1.003866 GCGTCCTGTGTTGTTTCACTC 60.004 52.381 0.00 0.00 38.90 3.51
4818 5171 2.276201 CGTCCTGTGTTGTTTCACTCA 58.724 47.619 0.00 0.00 38.90 3.41
4819 5172 2.872245 CGTCCTGTGTTGTTTCACTCAT 59.128 45.455 0.00 0.00 38.90 2.90
4820 5173 4.055360 CGTCCTGTGTTGTTTCACTCATA 58.945 43.478 0.00 0.00 38.90 2.15
4821 5174 4.084537 CGTCCTGTGTTGTTTCACTCATAC 60.085 45.833 0.00 0.00 38.90 2.39
4822 5175 4.055360 TCCTGTGTTGTTTCACTCATACG 58.945 43.478 0.00 0.00 38.90 3.06
4823 5176 3.363970 CCTGTGTTGTTTCACTCATACGC 60.364 47.826 0.00 0.00 38.90 4.42
4824 5177 3.198872 TGTGTTGTTTCACTCATACGCA 58.801 40.909 0.00 0.00 38.90 5.24
4825 5178 3.812609 TGTGTTGTTTCACTCATACGCAT 59.187 39.130 0.00 0.00 38.90 4.73
4826 5179 4.151070 GTGTTGTTTCACTCATACGCATG 58.849 43.478 0.00 0.00 35.68 4.06
4827 5180 3.812609 TGTTGTTTCACTCATACGCATGT 59.187 39.130 0.00 0.00 33.57 3.21
4828 5181 4.991687 TGTTGTTTCACTCATACGCATGTA 59.008 37.500 0.00 0.00 33.57 2.29
4829 5182 5.107259 TGTTGTTTCACTCATACGCATGTAC 60.107 40.000 0.00 0.00 32.26 2.90
4830 5183 3.610677 TGTTTCACTCATACGCATGTACG 59.389 43.478 0.00 0.00 39.50 3.67
4831 5184 2.485266 TCACTCATACGCATGTACGG 57.515 50.000 0.00 0.00 37.37 4.02
4832 5185 0.852777 CACTCATACGCATGTACGGC 59.147 55.000 0.00 0.00 37.37 5.68
4833 5186 0.249322 ACTCATACGCATGTACGGCC 60.249 55.000 0.00 0.00 37.37 6.13
4834 5187 0.032130 CTCATACGCATGTACGGCCT 59.968 55.000 0.00 0.00 37.37 5.19
4835 5188 0.249280 TCATACGCATGTACGGCCTG 60.249 55.000 0.00 0.00 37.37 4.85
4836 5189 0.249280 CATACGCATGTACGGCCTGA 60.249 55.000 0.00 0.00 37.37 3.86
4837 5190 0.679505 ATACGCATGTACGGCCTGAT 59.320 50.000 0.00 0.00 37.37 2.90
4838 5191 0.462375 TACGCATGTACGGCCTGATT 59.538 50.000 0.00 0.00 37.37 2.57
4839 5192 0.392461 ACGCATGTACGGCCTGATTT 60.392 50.000 0.00 0.00 37.37 2.17
4840 5193 1.134640 ACGCATGTACGGCCTGATTTA 60.135 47.619 0.00 0.00 37.37 1.40
4841 5194 1.937223 CGCATGTACGGCCTGATTTAA 59.063 47.619 0.00 0.00 0.00 1.52
4842 5195 2.286184 CGCATGTACGGCCTGATTTAAC 60.286 50.000 0.00 0.00 0.00 2.01
4843 5196 2.032924 GCATGTACGGCCTGATTTAACC 59.967 50.000 0.00 0.00 0.00 2.85
4844 5197 3.275143 CATGTACGGCCTGATTTAACCA 58.725 45.455 0.00 0.00 0.00 3.67
4845 5198 3.637911 TGTACGGCCTGATTTAACCAT 57.362 42.857 0.00 0.00 0.00 3.55
4846 5199 3.537580 TGTACGGCCTGATTTAACCATC 58.462 45.455 0.00 0.00 0.00 3.51
4847 5200 1.663695 ACGGCCTGATTTAACCATCG 58.336 50.000 0.00 0.00 0.00 3.84
4848 5201 1.065709 ACGGCCTGATTTAACCATCGT 60.066 47.619 0.00 0.00 0.00 3.73
4849 5202 1.597663 CGGCCTGATTTAACCATCGTC 59.402 52.381 0.00 0.00 0.00 4.20
4850 5203 2.741878 CGGCCTGATTTAACCATCGTCT 60.742 50.000 0.00 0.00 0.00 4.18
4851 5204 2.614057 GGCCTGATTTAACCATCGTCTG 59.386 50.000 0.00 0.00 0.00 3.51
4852 5205 3.270877 GCCTGATTTAACCATCGTCTGT 58.729 45.455 0.00 0.00 0.00 3.41
4853 5206 3.063997 GCCTGATTTAACCATCGTCTGTG 59.936 47.826 0.00 0.00 0.00 3.66
4854 5207 4.503910 CCTGATTTAACCATCGTCTGTGA 58.496 43.478 0.00 0.00 0.00 3.58
4855 5208 4.935205 CCTGATTTAACCATCGTCTGTGAA 59.065 41.667 0.00 0.00 0.00 3.18
4856 5209 5.586243 CCTGATTTAACCATCGTCTGTGAAT 59.414 40.000 0.00 0.00 0.00 2.57
4857 5210 6.238211 CCTGATTTAACCATCGTCTGTGAATC 60.238 42.308 0.00 0.00 0.00 2.52
4858 5211 5.290885 TGATTTAACCATCGTCTGTGAATCG 59.709 40.000 0.00 0.00 0.00 3.34
4859 5212 2.743636 AACCATCGTCTGTGAATCGT 57.256 45.000 0.00 0.00 0.00 3.73
4860 5213 2.279582 ACCATCGTCTGTGAATCGTC 57.720 50.000 0.00 0.00 0.00 4.20
4861 5214 1.135083 ACCATCGTCTGTGAATCGTCC 60.135 52.381 0.00 0.00 0.00 4.79
4862 5215 1.135139 CCATCGTCTGTGAATCGTCCT 59.865 52.381 0.00 0.00 0.00 3.85
4863 5216 2.188524 CATCGTCTGTGAATCGTCCTG 58.811 52.381 0.00 0.00 0.00 3.86
4864 5217 1.530323 TCGTCTGTGAATCGTCCTGA 58.470 50.000 0.00 0.00 0.00 3.86
4865 5218 2.092323 TCGTCTGTGAATCGTCCTGAT 58.908 47.619 0.00 0.00 39.67 2.90
4876 5229 5.718649 AATCGTCCTGATTTTATCGTGTG 57.281 39.130 0.00 0.00 45.06 3.82
4877 5230 2.927477 TCGTCCTGATTTTATCGTGTGC 59.073 45.455 0.00 0.00 0.00 4.57
4878 5231 2.670905 CGTCCTGATTTTATCGTGTGCA 59.329 45.455 0.00 0.00 0.00 4.57
4879 5232 3.309682 CGTCCTGATTTTATCGTGTGCAT 59.690 43.478 0.00 0.00 0.00 3.96
4880 5233 4.506288 CGTCCTGATTTTATCGTGTGCATA 59.494 41.667 0.00 0.00 0.00 3.14
4881 5234 5.332581 CGTCCTGATTTTATCGTGTGCATAG 60.333 44.000 0.00 0.00 0.00 2.23
4882 5235 4.511454 TCCTGATTTTATCGTGTGCATAGC 59.489 41.667 0.00 0.00 0.00 2.97
4883 5236 4.273235 CCTGATTTTATCGTGTGCATAGCA 59.727 41.667 0.00 0.00 35.60 3.49
4884 5237 5.049198 CCTGATTTTATCGTGTGCATAGCAT 60.049 40.000 0.00 0.00 41.91 3.79
4885 5238 5.750650 TGATTTTATCGTGTGCATAGCATG 58.249 37.500 0.00 0.00 41.91 4.06
4933 5312 8.576442 GTTGAATATGTAATTTGGTAGATGGGG 58.424 37.037 0.00 0.00 0.00 4.96
4952 5331 2.108952 GGGAGGTGAGCCCATAATCATT 59.891 50.000 0.00 0.00 45.31 2.57
4956 5335 3.073650 AGGTGAGCCCATAATCATTCCTC 59.926 47.826 0.00 0.00 34.66 3.71
4957 5336 3.181440 GGTGAGCCCATAATCATTCCTCA 60.181 47.826 0.00 0.00 0.00 3.86
4968 5347 3.845781 TCATTCCTCAGGATTAGCCAC 57.154 47.619 0.00 0.00 40.02 5.01
4971 5350 2.088104 TCCTCAGGATTAGCCACGAT 57.912 50.000 0.00 0.00 40.02 3.73
4973 5352 1.270518 CCTCAGGATTAGCCACGATGG 60.271 57.143 0.00 0.00 41.55 3.51
4988 5367 1.652124 CGATGGTGAACCTCGTTAACG 59.348 52.381 21.85 21.85 41.45 3.18
5024 5403 5.645497 GTCCTGTCTACTTTTCTGCAATGAT 59.355 40.000 0.00 0.00 0.00 2.45
5026 5405 7.010923 GTCCTGTCTACTTTTCTGCAATGATAG 59.989 40.741 0.00 0.00 0.00 2.08
5027 5406 7.044181 CCTGTCTACTTTTCTGCAATGATAGA 58.956 38.462 0.00 0.00 0.00 1.98
5029 5408 9.107177 CTGTCTACTTTTCTGCAATGATAGATT 57.893 33.333 0.00 0.00 0.00 2.40
5030 5409 9.453572 TGTCTACTTTTCTGCAATGATAGATTT 57.546 29.630 0.00 0.00 0.00 2.17
5032 5411 8.400947 TCTACTTTTCTGCAATGATAGATTTGC 58.599 33.333 0.88 0.88 46.53 3.68
5139 5616 3.053395 ACAGTGCTCCATATTCCACCATT 60.053 43.478 0.00 0.00 0.00 3.16
5253 5730 6.024656 GTTTGCAAACAATGGTCTTGCCAG 62.025 45.833 32.21 0.00 43.58 4.85
5293 5776 4.862350 TCAAACTACTCGAACGAACATGA 58.138 39.130 0.00 0.00 0.00 3.07
5306 5789 6.415280 CGAACGAACATGATAAACAAAACCAA 59.585 34.615 0.00 0.00 0.00 3.67
5309 5792 6.866248 ACGAACATGATAAACAAAACCAATCC 59.134 34.615 0.00 0.00 0.00 3.01
5312 5795 8.606040 AACATGATAAACAAAACCAATCCAAG 57.394 30.769 0.00 0.00 0.00 3.61
5349 5832 2.545526 CACTAGCACACCACTCAAACTG 59.454 50.000 0.00 0.00 0.00 3.16
5359 5842 4.637534 CACCACTCAAACTGAATCCTATGG 59.362 45.833 0.00 0.00 0.00 2.74
5401 5884 6.563422 TGCAATCCTACAAATCAAATAGTGC 58.437 36.000 0.00 0.00 0.00 4.40
5479 5962 0.906756 TAGACAGCAAGAGCCCTGCT 60.907 55.000 0.00 0.00 43.88 4.24
5518 6001 4.161754 AGAACCAAACTAGTATTCCCTCCG 59.838 45.833 0.00 0.00 0.00 4.63
5524 6007 3.705051 ACTAGTATTCCCTCCGTTCACA 58.295 45.455 0.00 0.00 0.00 3.58
5593 6076 7.436536 CACATTTAACTGTGTTTGTTCACTC 57.563 36.000 15.75 0.00 41.29 3.51
5594 6077 7.026562 CACATTTAACTGTGTTTGTTCACTCA 58.973 34.615 15.75 0.00 41.29 3.41
5665 6148 2.635915 TGTGAACGGAGGGAGTAACAAT 59.364 45.455 0.00 0.00 0.00 2.71
5715 6198 7.648908 CCAACATAAATTGTACATGGCATGTAG 59.351 37.037 34.24 23.31 45.62 2.74
5716 6199 7.880160 ACATAAATTGTACATGGCATGTAGT 57.120 32.000 34.24 23.87 45.62 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.030007 CACCATTTGCAACTCCGTCATT 60.030 45.455 0.00 0.00 0.00 2.57
126 127 6.950545 CATGATTTGTTTCATGCACAAAAGT 58.049 32.000 20.41 10.10 45.02 2.66
155 156 1.153568 CTCGATCTCTTTGGCGGCA 60.154 57.895 7.97 7.97 0.00 5.69
165 166 2.425312 TGAACTCAAGGAGCTCGATCTC 59.575 50.000 7.83 7.76 32.04 2.75
200 201 1.447838 ATGGTTGGTCGTAGCTGCG 60.448 57.895 18.85 18.85 0.00 5.18
203 204 0.253044 ATGCATGGTTGGTCGTAGCT 59.747 50.000 0.00 0.00 0.00 3.32
210 211 1.340889 GTTGTGTCATGCATGGTTGGT 59.659 47.619 25.97 0.00 0.00 3.67
215 216 2.098607 GGATGAGTTGTGTCATGCATGG 59.901 50.000 25.97 8.24 43.01 3.66
223 224 3.330267 GTGAAGGAGGATGAGTTGTGTC 58.670 50.000 0.00 0.00 0.00 3.67
254 256 1.333931 TCTAGAGTAAGCACGATGGCG 59.666 52.381 0.00 0.00 44.79 5.69
280 282 6.348621 TGAGCTTTTTGTTGAATTTCTTGC 57.651 33.333 0.00 0.00 0.00 4.01
287 289 8.339714 CAAATGTCATTGAGCTTTTTGTTGAAT 58.660 29.630 0.00 0.00 31.84 2.57
326 328 4.675029 GACGGACACCACACCCGG 62.675 72.222 0.00 0.00 46.83 5.73
330 332 1.369692 TCCATGACGGACACCACAC 59.630 57.895 0.00 0.00 39.64 3.82
331 333 3.878358 TCCATGACGGACACCACA 58.122 55.556 0.00 0.00 39.64 4.17
342 344 0.455815 CCTGTCGACGACATCCATGA 59.544 55.000 29.29 6.46 41.94 3.07
349 351 1.001269 ATCCTCCCTGTCGACGACA 60.001 57.895 27.61 27.61 40.50 4.35
376 401 1.445582 CTTGGACTACACCGCCGTC 60.446 63.158 0.00 0.00 0.00 4.79
481 523 5.130350 CACTTTTCTTTCACTCCACCCTTA 58.870 41.667 0.00 0.00 0.00 2.69
529 571 6.014012 TCATATAGTACATTGACATCCCCGA 58.986 40.000 0.00 0.00 0.00 5.14
543 585 3.484886 GGATCGTCGCCGTCATATAGTAC 60.485 52.174 0.00 0.00 35.01 2.73
575 617 3.248363 TCTGCGAACAGTGATGAACTTTG 59.752 43.478 0.00 0.00 44.77 2.77
582 624 1.073964 CCAGTCTGCGAACAGTGATG 58.926 55.000 0.00 0.00 44.77 3.07
595 637 0.684805 GGATCGGTGGAGACCAGTCT 60.685 60.000 0.00 0.00 43.33 3.24
598 640 0.684479 TCTGGATCGGTGGAGACCAG 60.684 60.000 0.00 0.00 43.33 4.00
601 643 0.741915 GTCTCTGGATCGGTGGAGAC 59.258 60.000 15.09 15.09 44.70 3.36
656 699 3.366396 AGTTGTACTCATCATCTCGGGT 58.634 45.455 0.00 0.00 0.00 5.28
667 710 5.163550 CGGGAAGATGACATAGTTGTACTCA 60.164 44.000 0.00 0.00 35.79 3.41
677 720 2.430694 CTGTCCACGGGAAGATGACATA 59.569 50.000 0.00 0.00 34.98 2.29
685 728 1.806542 CAAATCACTGTCCACGGGAAG 59.193 52.381 0.00 0.00 31.38 3.46
698 741 4.234574 GGTTTTCACCGGAATCAAATCAC 58.765 43.478 9.46 0.00 31.60 3.06
1026 1073 3.879892 GGCTAGGATGCAAAGAAGGTTAG 59.120 47.826 0.00 0.00 34.04 2.34
1029 1076 1.918957 AGGCTAGGATGCAAAGAAGGT 59.081 47.619 0.00 0.00 34.04 3.50
1032 1079 3.763897 GGAAAAGGCTAGGATGCAAAGAA 59.236 43.478 0.00 0.00 34.04 2.52
1038 1085 1.028130 GCAGGAAAAGGCTAGGATGC 58.972 55.000 0.00 0.00 0.00 3.91
1094 1153 0.249120 GCCGGAATTTCAAAAGGGGG 59.751 55.000 5.05 0.00 0.00 5.40
1100 1159 2.028476 TCTCGAGAGCCGGAATTTCAAA 60.028 45.455 12.08 0.00 39.14 2.69
1132 1192 1.455822 AAAGAATCCACCACCCCTCA 58.544 50.000 0.00 0.00 0.00 3.86
1195 1255 3.065095 GTCTCCGCTACTAGTACAAGGTG 59.935 52.174 0.00 4.29 0.00 4.00
1204 1264 3.066481 GGGTAAAGTGTCTCCGCTACTAG 59.934 52.174 0.00 0.00 0.00 2.57
1205 1265 3.019564 GGGTAAAGTGTCTCCGCTACTA 58.980 50.000 0.00 0.00 0.00 1.82
1255 1316 2.380410 GCACGGTAGAAGCACACGG 61.380 63.158 0.00 0.00 0.00 4.94
1266 1327 1.948611 GCTGAAATCTTGGGCACGGTA 60.949 52.381 0.00 0.00 0.00 4.02
1302 1363 9.515226 GGGCAAAGATTCCAACTATTACATATA 57.485 33.333 0.00 0.00 0.00 0.86
1307 1368 5.299531 GGAGGGCAAAGATTCCAACTATTAC 59.700 44.000 0.00 0.00 0.00 1.89
1308 1369 5.193728 AGGAGGGCAAAGATTCCAACTATTA 59.806 40.000 0.00 0.00 32.02 0.98
1310 1371 3.529319 AGGAGGGCAAAGATTCCAACTAT 59.471 43.478 0.00 0.00 32.02 2.12
1311 1372 2.919602 AGGAGGGCAAAGATTCCAACTA 59.080 45.455 0.00 0.00 32.02 2.24
1341 1402 1.134965 CAGTAAGAGCAGAACGGGAGG 60.135 57.143 0.00 0.00 0.00 4.30
1399 1473 2.440247 CTCCATTCCGCCCCCAAC 60.440 66.667 0.00 0.00 0.00 3.77
1478 1552 4.379243 CGAGGGCGGCACAAGACT 62.379 66.667 12.47 0.00 0.00 3.24
1532 1607 0.462047 CCACCATGACCGCTTCCTAC 60.462 60.000 0.00 0.00 0.00 3.18
1540 1615 1.000717 GAACCAAAACCACCATGACCG 60.001 52.381 0.00 0.00 0.00 4.79
1583 1658 2.611292 GCACCAAGATAGACACAGATGC 59.389 50.000 0.00 0.00 0.00 3.91
1584 1659 4.118410 GAGCACCAAGATAGACACAGATG 58.882 47.826 0.00 0.00 0.00 2.90
1585 1660 3.133721 GGAGCACCAAGATAGACACAGAT 59.866 47.826 0.00 0.00 35.97 2.90
1586 1661 2.497675 GGAGCACCAAGATAGACACAGA 59.502 50.000 0.00 0.00 35.97 3.41
1637 1714 1.064017 TCCATAACCATCCACTTGGGC 60.064 52.381 0.00 0.00 41.35 5.36
1729 1806 5.887598 TCACCATGAATTTGATCCTACAAGG 59.112 40.000 0.00 0.00 36.46 3.61
1730 1807 7.395190 TTCACCATGAATTTGATCCTACAAG 57.605 36.000 0.00 0.00 30.26 3.16
1731 1808 7.773489 TTTCACCATGAATTTGATCCTACAA 57.227 32.000 0.00 0.00 36.11 2.41
1732 1809 7.614974 TCATTTCACCATGAATTTGATCCTACA 59.385 33.333 0.00 0.00 36.11 2.74
1733 1810 7.999679 TCATTTCACCATGAATTTGATCCTAC 58.000 34.615 0.00 0.00 36.11 3.18
1734 1811 8.771521 ATCATTTCACCATGAATTTGATCCTA 57.228 30.769 0.00 0.00 36.06 2.94
1775 1856 8.007716 GCAAATGATTTGACATCTTCACAAAAG 58.992 33.333 21.14 0.00 43.26 2.27
1847 2064 8.243961 TTGAAATCAAAATAGGACTTGTTCCA 57.756 30.769 0.00 0.00 38.82 3.53
1848 2065 7.814587 CCTTGAAATCAAAATAGGACTTGTTCC 59.185 37.037 0.00 0.00 38.98 3.62
1890 2107 3.974871 AATAAACAAAGACAACGGCGT 57.025 38.095 6.77 6.77 0.00 5.68
1904 2121 7.763528 TGTAAATCCATGATGCCACAAATAAAC 59.236 33.333 0.00 0.00 0.00 2.01
1914 2131 5.581126 TTGACTTGTAAATCCATGATGCC 57.419 39.130 0.00 0.00 0.00 4.40
1917 2134 5.658190 CCCCTTTGACTTGTAAATCCATGAT 59.342 40.000 0.00 0.00 0.00 2.45
1942 2159 8.417884 ACTTAATAGTCATGGCTTCTTCTAGTC 58.582 37.037 4.49 0.00 0.00 2.59
1943 2160 8.312669 ACTTAATAGTCATGGCTTCTTCTAGT 57.687 34.615 4.49 4.95 0.00 2.57
1966 2187 4.222336 AGCTGTCCTGCATATTCTCTACT 58.778 43.478 0.00 0.00 34.99 2.57
1967 2188 4.599047 AGCTGTCCTGCATATTCTCTAC 57.401 45.455 0.00 0.00 34.99 2.59
1968 2189 5.635120 TCTAGCTGTCCTGCATATTCTCTA 58.365 41.667 0.00 0.00 34.99 2.43
1969 2190 4.478203 TCTAGCTGTCCTGCATATTCTCT 58.522 43.478 0.00 0.00 34.99 3.10
2051 2272 7.770801 ATGCTTAAAAGTCAAAACCTTGTTC 57.229 32.000 0.00 0.00 33.94 3.18
2130 2354 2.024846 TCTCCCTAGACCTGAAGGACTG 60.025 54.545 11.01 2.54 40.30 3.51
2252 2479 7.500720 TCATCACATGGCTTTAGATTATGTG 57.499 36.000 0.00 0.00 46.03 3.21
2380 2607 7.275341 TGACTTTGTTAAACATTTTCTGCACAG 59.725 33.333 0.00 0.00 0.00 3.66
2381 2608 7.093354 TGACTTTGTTAAACATTTTCTGCACA 58.907 30.769 0.00 0.00 0.00 4.57
2750 2984 9.874215 GACAGAAGGTACTACATTTGTTTTTAC 57.126 33.333 0.00 0.00 38.49 2.01
2759 2993 7.215085 AGTTTTTCGACAGAAGGTACTACATT 58.785 34.615 0.00 0.00 38.49 2.71
2760 2994 6.756221 AGTTTTTCGACAGAAGGTACTACAT 58.244 36.000 0.00 0.00 38.49 2.29
2772 3006 8.015087 TGAGCATGTATTTTAGTTTTTCGACAG 58.985 33.333 0.00 0.00 0.00 3.51
2829 3063 5.009010 AGCTGCCATGTATACTTATGTTTGC 59.991 40.000 4.17 4.53 0.00 3.68
2848 3082 1.945394 CATCCCTTGTACATCAGCTGC 59.055 52.381 9.47 0.00 0.00 5.25
3093 3402 2.203070 GCGGCGAAGACATGGGAT 60.203 61.111 12.98 0.00 27.25 3.85
3139 3463 3.065655 CCAGTGAAGCACAGAAGAAGAG 58.934 50.000 0.00 0.00 36.74 2.85
3203 3527 8.713708 AGTAGATACACAACAGAGGCTATAAT 57.286 34.615 0.00 0.00 0.00 1.28
3346 3670 5.106197 TGGCACACATTTCAGATGATGTAAC 60.106 40.000 0.84 0.00 34.88 2.50
3378 3702 3.324846 AGCACACTCAACATCTCCAAGTA 59.675 43.478 0.00 0.00 0.00 2.24
3519 3843 3.073274 ACAGCTATTTCAACCCCACTC 57.927 47.619 0.00 0.00 0.00 3.51
3525 3849 2.164422 GGAGGCAACAGCTATTTCAACC 59.836 50.000 0.00 0.00 41.41 3.77
3585 3909 4.202567 ACCTTGTTCCTAAATTGCTCCTCA 60.203 41.667 0.00 0.00 0.00 3.86
3631 3958 5.689068 CAGAAGTTGAAAGAAATTGAGCACC 59.311 40.000 0.00 0.00 0.00 5.01
3645 3972 3.552132 TGCAGTACCACAGAAGTTGAA 57.448 42.857 0.00 0.00 0.00 2.69
3652 3979 5.127194 CCTTCTACTTATGCAGTACCACAGA 59.873 44.000 0.00 0.00 36.88 3.41
3653 3980 5.352284 CCTTCTACTTATGCAGTACCACAG 58.648 45.833 0.00 0.00 36.88 3.66
3654 3981 4.382685 GCCTTCTACTTATGCAGTACCACA 60.383 45.833 0.00 0.00 36.88 4.17
3657 3984 3.067742 TCGCCTTCTACTTATGCAGTACC 59.932 47.826 0.00 0.00 36.88 3.34
3677 4004 2.043411 CAGAACATTGTTGCGGTTTCG 58.957 47.619 6.80 0.00 39.81 3.46
3679 4006 1.408702 AGCAGAACATTGTTGCGGTTT 59.591 42.857 6.80 0.00 42.47 3.27
3680 4007 1.032014 AGCAGAACATTGTTGCGGTT 58.968 45.000 6.80 0.00 42.47 4.44
3681 4008 0.311790 CAGCAGAACATTGTTGCGGT 59.688 50.000 6.80 0.35 42.47 5.68
3682 4009 0.311790 ACAGCAGAACATTGTTGCGG 59.688 50.000 6.80 9.20 42.47 5.69
3683 4010 1.265095 AGACAGCAGAACATTGTTGCG 59.735 47.619 6.80 5.48 42.47 4.85
3684 4011 2.033801 ACAGACAGCAGAACATTGTTGC 59.966 45.455 6.80 6.06 38.09 4.17
3685 4012 3.065786 ACACAGACAGCAGAACATTGTTG 59.934 43.478 6.80 0.00 35.67 3.33
3686 4013 3.282021 ACACAGACAGCAGAACATTGTT 58.718 40.909 0.63 0.63 0.00 2.83
3687 4014 2.874701 GACACAGACAGCAGAACATTGT 59.125 45.455 0.00 0.00 0.00 2.71
3688 4015 3.059120 CAGACACAGACAGCAGAACATTG 60.059 47.826 0.00 0.00 0.00 2.82
3689 4016 3.136763 CAGACACAGACAGCAGAACATT 58.863 45.455 0.00 0.00 0.00 2.71
3690 4017 2.366590 TCAGACACAGACAGCAGAACAT 59.633 45.455 0.00 0.00 0.00 2.71
3691 4018 1.756538 TCAGACACAGACAGCAGAACA 59.243 47.619 0.00 0.00 0.00 3.18
3692 4019 2.515926 TCAGACACAGACAGCAGAAC 57.484 50.000 0.00 0.00 0.00 3.01
3693 4020 2.629617 TGATCAGACACAGACAGCAGAA 59.370 45.455 0.00 0.00 0.00 3.02
3694 4021 2.242043 TGATCAGACACAGACAGCAGA 58.758 47.619 0.00 0.00 0.00 4.26
3695 4022 2.735663 GTTGATCAGACACAGACAGCAG 59.264 50.000 0.00 0.00 0.00 4.24
3696 4023 2.366590 AGTTGATCAGACACAGACAGCA 59.633 45.455 0.00 0.00 0.00 4.41
3697 4024 2.992543 GAGTTGATCAGACACAGACAGC 59.007 50.000 0.00 0.00 0.00 4.40
3698 4025 4.517952 AGAGTTGATCAGACACAGACAG 57.482 45.455 0.00 0.00 0.00 3.51
3727 4054 6.047870 CACTTTGGATAACTCAGAGATCTGG 58.952 44.000 3.79 3.84 43.91 3.86
3872 4199 6.344500 AGGTGTTCAGATACTGATGATGTTC 58.656 40.000 2.30 0.00 40.39 3.18
3873 4200 6.305272 AGGTGTTCAGATACTGATGATGTT 57.695 37.500 2.30 0.00 40.39 2.71
3874 4201 5.946942 AGGTGTTCAGATACTGATGATGT 57.053 39.130 2.30 0.00 40.39 3.06
3875 4202 5.757320 GGAAGGTGTTCAGATACTGATGATG 59.243 44.000 2.30 0.00 40.39 3.07
3876 4203 5.426509 TGGAAGGTGTTCAGATACTGATGAT 59.573 40.000 2.30 0.00 40.39 2.45
3877 4204 4.777366 TGGAAGGTGTTCAGATACTGATGA 59.223 41.667 2.30 0.00 40.39 2.92
3906 4237 4.201950 GGCAAAAGCGACAACATCATATCT 60.202 41.667 0.00 0.00 0.00 1.98
3907 4238 4.037690 GGCAAAAGCGACAACATCATATC 58.962 43.478 0.00 0.00 0.00 1.63
3908 4239 3.443329 TGGCAAAAGCGACAACATCATAT 59.557 39.130 0.00 0.00 0.00 1.78
3909 4240 2.816672 TGGCAAAAGCGACAACATCATA 59.183 40.909 0.00 0.00 0.00 2.15
3910 4241 1.612950 TGGCAAAAGCGACAACATCAT 59.387 42.857 0.00 0.00 0.00 2.45
3911 4242 1.028130 TGGCAAAAGCGACAACATCA 58.972 45.000 0.00 0.00 0.00 3.07
3912 4243 1.001378 AGTGGCAAAAGCGACAACATC 60.001 47.619 5.47 0.00 0.00 3.06
3913 4244 1.032014 AGTGGCAAAAGCGACAACAT 58.968 45.000 5.47 0.00 0.00 2.71
3918 4249 1.195674 GAGAGAAGTGGCAAAAGCGAC 59.804 52.381 0.00 0.00 0.00 5.19
3925 4256 3.134623 TGTTTCTGAGAGAGAAGTGGCAA 59.865 43.478 0.00 0.00 41.86 4.52
3968 4299 3.071874 TCCCTGACTGCATCGAAAAAT 57.928 42.857 0.00 0.00 0.00 1.82
4130 4461 1.070786 GGTGTCCGAGAACTTGGCA 59.929 57.895 3.36 2.96 34.01 4.92
4142 4473 0.037232 CCTTCCAGAACTCGGTGTCC 60.037 60.000 0.00 0.00 0.00 4.02
4532 4866 0.665298 TGGACATGATCTCGAGCTCG 59.335 55.000 30.03 30.03 41.45 5.03
4553 4887 2.583024 TGTCATTTCAGGTGGATGCA 57.417 45.000 0.00 0.00 0.00 3.96
4646 4998 2.311542 TGAGGCCAAAAGGATGTACCAT 59.688 45.455 5.01 0.00 42.04 3.55
4647 4999 1.707989 TGAGGCCAAAAGGATGTACCA 59.292 47.619 5.01 0.00 42.04 3.25
4648 5000 2.290960 ACTGAGGCCAAAAGGATGTACC 60.291 50.000 5.01 0.00 39.35 3.34
4649 5001 3.073274 ACTGAGGCCAAAAGGATGTAC 57.927 47.619 5.01 0.00 0.00 2.90
4653 5005 2.962859 ACAAACTGAGGCCAAAAGGAT 58.037 42.857 5.01 0.00 0.00 3.24
4665 5017 5.420421 TGATCCAAGGACAAAAACAAACTGA 59.580 36.000 0.00 0.00 0.00 3.41
4668 5020 5.519927 CAGTGATCCAAGGACAAAAACAAAC 59.480 40.000 0.00 0.00 0.00 2.93
4735 5088 3.495193 CATGGAGCAGTTTCGTCAAATG 58.505 45.455 0.00 0.00 0.00 2.32
4739 5092 0.684535 TCCATGGAGCAGTTTCGTCA 59.315 50.000 11.44 0.00 0.00 4.35
4740 5093 1.079503 GTCCATGGAGCAGTTTCGTC 58.920 55.000 16.81 0.00 0.00 4.20
4741 5094 0.670546 CGTCCATGGAGCAGTTTCGT 60.671 55.000 16.81 0.00 0.00 3.85
4742 5095 0.389817 TCGTCCATGGAGCAGTTTCG 60.390 55.000 16.81 13.50 0.00 3.46
4743 5096 2.029838 ATCGTCCATGGAGCAGTTTC 57.970 50.000 16.81 0.00 0.00 2.78
4744 5097 2.501723 AGTATCGTCCATGGAGCAGTTT 59.498 45.455 16.81 5.21 0.00 2.66
4746 5099 1.410517 CAGTATCGTCCATGGAGCAGT 59.589 52.381 16.81 4.36 0.00 4.40
4747 5100 1.269988 CCAGTATCGTCCATGGAGCAG 60.270 57.143 16.81 10.10 34.60 4.24
4749 5102 0.601311 GCCAGTATCGTCCATGGAGC 60.601 60.000 16.81 8.76 34.60 4.70
4751 5104 1.739667 CGCCAGTATCGTCCATGGA 59.260 57.895 11.44 11.44 34.60 3.41
4752 5105 1.956170 GCGCCAGTATCGTCCATGG 60.956 63.158 4.97 4.97 35.84 3.66
4753 5106 1.956170 GGCGCCAGTATCGTCCATG 60.956 63.158 24.80 0.00 0.00 3.66
4754 5107 2.421739 GGCGCCAGTATCGTCCAT 59.578 61.111 24.80 0.00 0.00 3.41
4775 5128 4.552767 GCTGGATTTACATATCGTGCACAC 60.553 45.833 18.64 0.00 0.00 3.82
4776 5129 3.559655 GCTGGATTTACATATCGTGCACA 59.440 43.478 18.64 4.45 0.00 4.57
4777 5130 3.362986 CGCTGGATTTACATATCGTGCAC 60.363 47.826 6.82 6.82 0.00 4.57
4778 5131 2.799978 CGCTGGATTTACATATCGTGCA 59.200 45.455 0.00 0.00 0.00 4.57
4779 5132 2.800544 ACGCTGGATTTACATATCGTGC 59.199 45.455 0.00 0.00 0.00 5.34
4780 5133 3.428870 GGACGCTGGATTTACATATCGTG 59.571 47.826 0.00 0.00 0.00 4.35
4781 5134 3.321111 AGGACGCTGGATTTACATATCGT 59.679 43.478 0.00 0.00 0.00 3.73
4782 5135 3.675225 CAGGACGCTGGATTTACATATCG 59.325 47.826 0.00 0.00 0.00 2.92
4783 5136 4.449068 CACAGGACGCTGGATTTACATATC 59.551 45.833 0.00 0.00 0.00 1.63
4784 5137 4.141711 ACACAGGACGCTGGATTTACATAT 60.142 41.667 0.00 0.00 0.00 1.78
4785 5138 3.196901 ACACAGGACGCTGGATTTACATA 59.803 43.478 0.00 0.00 0.00 2.29
4786 5139 2.027192 ACACAGGACGCTGGATTTACAT 60.027 45.455 0.00 0.00 0.00 2.29
4787 5140 1.346395 ACACAGGACGCTGGATTTACA 59.654 47.619 0.00 0.00 0.00 2.41
4788 5141 2.094762 ACACAGGACGCTGGATTTAC 57.905 50.000 0.00 0.00 0.00 2.01
4789 5142 2.224426 ACAACACAGGACGCTGGATTTA 60.224 45.455 0.00 0.00 0.00 1.40
4790 5143 1.238439 CAACACAGGACGCTGGATTT 58.762 50.000 0.00 0.00 0.00 2.17
4791 5144 0.108585 ACAACACAGGACGCTGGATT 59.891 50.000 0.00 0.00 0.00 3.01
4792 5145 0.108585 AACAACACAGGACGCTGGAT 59.891 50.000 0.00 0.00 0.00 3.41
4793 5146 0.107410 AAACAACACAGGACGCTGGA 60.107 50.000 0.00 0.00 0.00 3.86
4794 5147 0.307760 GAAACAACACAGGACGCTGG 59.692 55.000 0.00 0.00 0.00 4.85
4795 5148 1.013596 TGAAACAACACAGGACGCTG 58.986 50.000 0.00 0.00 0.00 5.18
4796 5149 1.014352 GTGAAACAACACAGGACGCT 58.986 50.000 0.00 0.00 40.11 5.07
4797 5150 1.003866 GAGTGAAACAACACAGGACGC 60.004 52.381 0.00 0.00 42.45 5.19
4798 5151 2.276201 TGAGTGAAACAACACAGGACG 58.724 47.619 0.00 0.00 42.45 4.79
4799 5152 4.084537 CGTATGAGTGAAACAACACAGGAC 60.085 45.833 0.00 0.00 42.45 3.85
4800 5153 4.055360 CGTATGAGTGAAACAACACAGGA 58.945 43.478 0.00 0.00 42.45 3.86
4801 5154 3.363970 GCGTATGAGTGAAACAACACAGG 60.364 47.826 0.00 0.00 42.45 4.00
4802 5155 3.247411 TGCGTATGAGTGAAACAACACAG 59.753 43.478 0.00 0.00 42.45 3.66
4803 5156 3.198872 TGCGTATGAGTGAAACAACACA 58.801 40.909 0.00 0.00 42.45 3.72
4804 5157 3.870723 TGCGTATGAGTGAAACAACAC 57.129 42.857 0.00 0.00 41.43 3.32
4805 5158 3.812609 ACATGCGTATGAGTGAAACAACA 59.187 39.130 20.86 0.00 37.19 3.33
4806 5159 4.404507 ACATGCGTATGAGTGAAACAAC 57.595 40.909 20.86 0.00 37.19 3.32
4807 5160 4.090786 CGTACATGCGTATGAGTGAAACAA 59.909 41.667 20.86 0.00 36.84 2.83
4808 5161 3.610677 CGTACATGCGTATGAGTGAAACA 59.389 43.478 20.86 0.00 36.84 2.83
4809 5162 3.000078 CCGTACATGCGTATGAGTGAAAC 60.000 47.826 20.86 7.04 36.84 2.78
4810 5163 3.183754 CCGTACATGCGTATGAGTGAAA 58.816 45.455 20.86 0.00 36.84 2.69
4811 5164 2.804647 CCGTACATGCGTATGAGTGAA 58.195 47.619 20.86 0.00 36.84 3.18
4812 5165 1.535226 GCCGTACATGCGTATGAGTGA 60.535 52.381 20.86 0.00 36.84 3.41
4813 5166 0.852777 GCCGTACATGCGTATGAGTG 59.147 55.000 20.86 8.33 36.84 3.51
4814 5167 0.249322 GGCCGTACATGCGTATGAGT 60.249 55.000 20.86 0.90 36.84 3.41
4815 5168 0.032130 AGGCCGTACATGCGTATGAG 59.968 55.000 20.86 10.35 36.84 2.90
4816 5169 0.249280 CAGGCCGTACATGCGTATGA 60.249 55.000 20.86 1.06 36.84 2.15
4817 5170 0.249280 TCAGGCCGTACATGCGTATG 60.249 55.000 12.28 12.28 40.24 2.39
4818 5171 0.679505 ATCAGGCCGTACATGCGTAT 59.320 50.000 0.00 0.00 0.00 3.06
4819 5172 0.462375 AATCAGGCCGTACATGCGTA 59.538 50.000 0.00 0.00 0.00 4.42
4820 5173 0.392461 AAATCAGGCCGTACATGCGT 60.392 50.000 0.00 0.00 0.00 5.24
4821 5174 1.577468 TAAATCAGGCCGTACATGCG 58.423 50.000 0.00 0.00 0.00 4.73
4822 5175 2.032924 GGTTAAATCAGGCCGTACATGC 59.967 50.000 0.00 0.00 0.00 4.06
4823 5176 3.275143 TGGTTAAATCAGGCCGTACATG 58.725 45.455 0.00 0.00 0.00 3.21
4824 5177 3.637911 TGGTTAAATCAGGCCGTACAT 57.362 42.857 0.00 0.00 0.00 2.29
4825 5178 3.537580 GATGGTTAAATCAGGCCGTACA 58.462 45.455 0.00 0.00 0.00 2.90
4826 5179 2.542595 CGATGGTTAAATCAGGCCGTAC 59.457 50.000 0.00 0.00 0.00 3.67
4827 5180 2.168936 ACGATGGTTAAATCAGGCCGTA 59.831 45.455 0.00 0.00 0.00 4.02
4828 5181 1.065709 ACGATGGTTAAATCAGGCCGT 60.066 47.619 0.00 0.00 0.00 5.68
4829 5182 1.597663 GACGATGGTTAAATCAGGCCG 59.402 52.381 0.00 0.00 0.00 6.13
4830 5183 2.614057 CAGACGATGGTTAAATCAGGCC 59.386 50.000 0.00 0.00 0.00 5.19
4831 5184 3.063997 CACAGACGATGGTTAAATCAGGC 59.936 47.826 0.00 0.00 0.00 4.85
4832 5185 4.503910 TCACAGACGATGGTTAAATCAGG 58.496 43.478 0.00 0.00 0.00 3.86
4833 5186 6.508563 CGATTCACAGACGATGGTTAAATCAG 60.509 42.308 0.00 0.00 0.00 2.90
4834 5187 5.290885 CGATTCACAGACGATGGTTAAATCA 59.709 40.000 0.00 0.00 0.00 2.57
4835 5188 5.291128 ACGATTCACAGACGATGGTTAAATC 59.709 40.000 0.00 0.00 0.00 2.17
4836 5189 5.175859 ACGATTCACAGACGATGGTTAAAT 58.824 37.500 0.00 0.00 0.00 1.40
4837 5190 4.562082 ACGATTCACAGACGATGGTTAAA 58.438 39.130 0.00 0.00 0.00 1.52
4838 5191 4.171005 GACGATTCACAGACGATGGTTAA 58.829 43.478 0.00 0.00 0.00 2.01
4839 5192 3.428452 GGACGATTCACAGACGATGGTTA 60.428 47.826 0.00 0.00 0.00 2.85
4840 5193 2.607187 GACGATTCACAGACGATGGTT 58.393 47.619 0.00 0.00 0.00 3.67
4841 5194 1.135083 GGACGATTCACAGACGATGGT 60.135 52.381 0.00 0.00 0.00 3.55
4842 5195 1.135139 AGGACGATTCACAGACGATGG 59.865 52.381 0.00 0.00 0.00 3.51
4843 5196 2.159379 TCAGGACGATTCACAGACGATG 60.159 50.000 0.00 0.00 0.00 3.84
4844 5197 2.092323 TCAGGACGATTCACAGACGAT 58.908 47.619 0.00 0.00 0.00 3.73
4845 5198 1.530323 TCAGGACGATTCACAGACGA 58.470 50.000 0.00 0.00 0.00 4.20
4846 5199 2.568696 ATCAGGACGATTCACAGACG 57.431 50.000 0.00 0.00 0.00 4.18
4847 5200 6.291849 CGATAAAATCAGGACGATTCACAGAC 60.292 42.308 0.00 0.00 43.83 3.51
4848 5201 5.748630 CGATAAAATCAGGACGATTCACAGA 59.251 40.000 0.00 0.00 43.83 3.41
4849 5202 5.520288 ACGATAAAATCAGGACGATTCACAG 59.480 40.000 0.00 0.00 43.83 3.66
4850 5203 5.290885 CACGATAAAATCAGGACGATTCACA 59.709 40.000 0.00 0.00 43.83 3.58
4851 5204 5.291128 ACACGATAAAATCAGGACGATTCAC 59.709 40.000 0.00 0.00 43.83 3.18
4852 5205 5.290885 CACACGATAAAATCAGGACGATTCA 59.709 40.000 0.00 0.00 43.83 2.57
4853 5206 5.728255 CACACGATAAAATCAGGACGATTC 58.272 41.667 0.00 0.00 43.83 2.52
4854 5207 4.034048 GCACACGATAAAATCAGGACGATT 59.966 41.667 0.00 0.00 46.70 3.34
4855 5208 3.555956 GCACACGATAAAATCAGGACGAT 59.444 43.478 0.00 0.00 35.12 3.73
4856 5209 2.927477 GCACACGATAAAATCAGGACGA 59.073 45.455 0.00 0.00 0.00 4.20
4857 5210 2.670905 TGCACACGATAAAATCAGGACG 59.329 45.455 0.00 0.00 0.00 4.79
4858 5211 4.882671 ATGCACACGATAAAATCAGGAC 57.117 40.909 0.00 0.00 0.00 3.85
4859 5212 4.511454 GCTATGCACACGATAAAATCAGGA 59.489 41.667 0.00 0.00 0.00 3.86
4860 5213 4.273235 TGCTATGCACACGATAAAATCAGG 59.727 41.667 0.00 0.00 31.71 3.86
4861 5214 5.408204 TGCTATGCACACGATAAAATCAG 57.592 39.130 0.00 0.00 31.71 2.90
4862 5215 5.750650 CATGCTATGCACACGATAAAATCA 58.249 37.500 0.00 0.00 43.04 2.57
4877 5230 2.759191 ACAGATACACGGCATGCTATG 58.241 47.619 18.92 17.74 0.00 2.23
4878 5231 3.475566 AACAGATACACGGCATGCTAT 57.524 42.857 18.92 7.29 0.00 2.97
4879 5232 2.979814 AACAGATACACGGCATGCTA 57.020 45.000 18.92 1.76 0.00 3.49
4880 5233 2.979814 TAACAGATACACGGCATGCT 57.020 45.000 18.92 0.00 0.00 3.79
4881 5234 4.349663 TTTTAACAGATACACGGCATGC 57.650 40.909 9.90 9.90 0.00 4.06
4882 5235 6.251163 CACAATTTTAACAGATACACGGCATG 59.749 38.462 0.00 0.00 0.00 4.06
4883 5236 6.072175 ACACAATTTTAACAGATACACGGCAT 60.072 34.615 0.00 0.00 0.00 4.40
4884 5237 5.239744 ACACAATTTTAACAGATACACGGCA 59.760 36.000 0.00 0.00 0.00 5.69
4885 5238 5.695818 ACACAATTTTAACAGATACACGGC 58.304 37.500 0.00 0.00 0.00 5.68
4886 5239 7.356540 TCAACACAATTTTAACAGATACACGG 58.643 34.615 0.00 0.00 0.00 4.94
4887 5240 8.775220 TTCAACACAATTTTAACAGATACACG 57.225 30.769 0.00 0.00 0.00 4.49
4918 5271 3.197983 TCACCTCCCCATCTACCAAATT 58.802 45.455 0.00 0.00 0.00 1.82
4933 5312 3.073650 AGGAATGATTATGGGCTCACCTC 59.926 47.826 0.00 0.00 41.11 3.85
4944 5323 6.479884 GTGGCTAATCCTGAGGAATGATTAT 58.520 40.000 4.76 0.00 34.34 1.28
4948 5327 2.103094 CGTGGCTAATCCTGAGGAATGA 59.897 50.000 4.76 0.00 34.34 2.57
4952 5331 1.688735 CATCGTGGCTAATCCTGAGGA 59.311 52.381 2.43 2.43 35.55 3.71
4956 5335 1.138859 TCACCATCGTGGCTAATCCTG 59.861 52.381 4.23 0.00 42.67 3.86
4957 5336 1.496060 TCACCATCGTGGCTAATCCT 58.504 50.000 4.23 0.00 42.67 3.24
4968 5347 1.652124 CGTTAACGAGGTTCACCATCG 59.348 52.381 23.35 13.17 43.02 3.84
4988 5367 2.417719 AGACAGGACTTGCGATGTTTC 58.582 47.619 0.00 0.00 0.00 2.78
4996 5375 3.187432 GCAGAAAAGTAGACAGGACTTGC 59.813 47.826 0.00 0.00 37.22 4.01
4998 5377 4.689612 TGCAGAAAAGTAGACAGGACTT 57.310 40.909 0.00 0.00 38.81 3.01
4999 5378 4.689612 TTGCAGAAAAGTAGACAGGACT 57.310 40.909 0.00 0.00 0.00 3.85
5066 5445 4.080356 TGGTTTCCAAGGGATACATGAGAG 60.080 45.833 0.00 0.00 35.79 3.20
5161 5638 3.947834 GCAGAGAGCAGGGCTAATAAAAA 59.052 43.478 0.00 0.00 44.79 1.94
5201 5678 9.938280 TGTACTCAGCAATGTAATAACTTAAGT 57.062 29.630 1.12 1.12 0.00 2.24
5217 5694 4.082517 TGTTTGCAAACTTTGTACTCAGCA 60.083 37.500 35.09 13.66 39.59 4.41
5293 5776 9.927668 CTCAATACTTGGATTGGTTTTGTTTAT 57.072 29.630 5.81 0.00 37.41 1.40
5306 5789 6.328672 AGTGATAGGCTTCTCAATACTTGGAT 59.671 38.462 0.00 0.00 0.00 3.41
5309 5792 6.644592 GCTAGTGATAGGCTTCTCAATACTTG 59.355 42.308 0.00 0.00 0.00 3.16
5312 5795 5.923684 GTGCTAGTGATAGGCTTCTCAATAC 59.076 44.000 0.00 0.00 0.00 1.89
5398 5881 5.862323 TCTTACGAGTTTTCTCTACATGCAC 59.138 40.000 0.00 0.00 44.16 4.57
5433 5916 8.717717 TCCTATGTGTGATTCTTGAAGGATTAT 58.282 33.333 0.00 0.00 0.00 1.28
5434 5917 8.089625 TCCTATGTGTGATTCTTGAAGGATTA 57.910 34.615 0.00 0.00 0.00 1.75
5435 5918 6.962182 TCCTATGTGTGATTCTTGAAGGATT 58.038 36.000 0.00 0.00 0.00 3.01
5436 5919 6.566079 TCCTATGTGTGATTCTTGAAGGAT 57.434 37.500 0.00 0.00 0.00 3.24
5437 5920 6.566079 ATCCTATGTGTGATTCTTGAAGGA 57.434 37.500 0.00 0.00 35.24 3.36
5438 5921 7.655328 GTCTATCCTATGTGTGATTCTTGAAGG 59.345 40.741 0.00 0.00 0.00 3.46
5445 5928 5.847304 TGCTGTCTATCCTATGTGTGATTC 58.153 41.667 0.00 0.00 0.00 2.52
5501 5984 4.529377 TGTGAACGGAGGGAATACTAGTTT 59.471 41.667 0.00 0.00 0.00 2.66
5510 5993 5.045432 ACCTTATATTTGTGAACGGAGGGAA 60.045 40.000 0.00 0.00 0.00 3.97
5572 6055 9.086336 CAAATGAGTGAACAAACACAGTTAAAT 57.914 29.630 0.00 0.00 42.45 1.40
5576 6059 6.266168 TCAAATGAGTGAACAAACACAGTT 57.734 33.333 0.00 0.00 42.45 3.16
5627 6110 8.240682 TCCGTTCACAAATATAAGATGTTTTGG 58.759 33.333 0.00 0.00 34.23 3.28
5636 6119 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
5715 6198 5.927954 ATGGTGTTTCATTTTTGCATGAC 57.072 34.783 0.00 0.00 32.68 3.06
5716 6199 6.519382 TGTATGGTGTTTCATTTTTGCATGA 58.481 32.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.