Multiple sequence alignment - TraesCS5D01G156100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G156100 chr5D 100.000 7190 0 0 1 7190 244376019 244368830 0.000000e+00 13278.0
1 TraesCS5D01G156100 chr5D 96.850 127 4 0 6247 6373 7945908 7945782 5.650000e-51 213.0
2 TraesCS5D01G156100 chr5D 97.183 71 2 0 2039 2109 244373945 244373875 3.520000e-23 121.0
3 TraesCS5D01G156100 chr5D 97.183 71 2 0 2075 2145 244373981 244373911 3.520000e-23 121.0
4 TraesCS5D01G156100 chr5A 98.401 2001 21 8 2075 4072 328725746 328723754 0.000000e+00 3507.0
5 TraesCS5D01G156100 chr5A 94.595 1887 68 11 4087 5958 328720971 328719104 0.000000e+00 2889.0
6 TraesCS5D01G156100 chr5A 96.636 1635 39 9 491 2109 328727310 328725676 0.000000e+00 2700.0
7 TraesCS5D01G156100 chr5A 89.806 824 54 14 6389 7190 328718878 328718063 0.000000e+00 1029.0
8 TraesCS5D01G156100 chr5A 88.595 491 30 10 3 477 328727774 328727294 2.250000e-159 573.0
9 TraesCS5D01G156100 chr5A 92.273 220 7 7 6038 6248 328719106 328718888 3.260000e-78 303.0
10 TraesCS5D01G156100 chr5A 95.276 127 6 0 6247 6373 439864776 439864650 1.220000e-47 202.0
11 TraesCS5D01G156100 chr5A 90.909 88 5 3 5955 6040 436259258 436259172 1.640000e-21 115.0
12 TraesCS5D01G156100 chr5A 97.143 35 1 0 2039 2073 328725710 328725676 7.790000e-05 60.2
13 TraesCS5D01G156100 chr5B 96.957 1972 43 10 2105 4072 277642189 277640231 0.000000e+00 3293.0
14 TraesCS5D01G156100 chr5B 93.280 1890 78 23 4086 5958 277640141 277638284 0.000000e+00 2741.0
15 TraesCS5D01G156100 chr5B 91.289 1986 117 29 101 2073 277644091 277642149 0.000000e+00 2658.0
16 TraesCS5D01G156100 chr5B 92.707 809 39 8 6389 7190 277638064 277637269 0.000000e+00 1149.0
17 TraesCS5D01G156100 chr5B 93.023 215 9 4 6038 6248 277638286 277638074 7.010000e-80 309.0
18 TraesCS5D01G156100 chrUn 97.692 130 3 0 6244 6373 108296189 108296318 2.610000e-54 224.0
19 TraesCS5D01G156100 chrUn 88.298 94 7 3 5955 6045 348315108 348315200 7.630000e-20 110.0
20 TraesCS5D01G156100 chrUn 87.629 97 8 3 5955 6048 382593773 382593678 7.630000e-20 110.0
21 TraesCS5D01G156100 chrUn 87.629 97 8 3 5955 6048 427230699 427230604 7.630000e-20 110.0
22 TraesCS5D01G156100 chr4D 96.947 131 4 0 6243 6373 8137598 8137728 3.380000e-53 220.0
23 TraesCS5D01G156100 chr4D 94.074 135 7 1 6239 6373 329006000 329006133 3.400000e-48 204.0
24 TraesCS5D01G156100 chr4D 89.773 88 8 1 5956 6042 19394963 19395050 2.120000e-20 111.0
25 TraesCS5D01G156100 chr6D 96.094 128 5 0 6246 6373 87124599 87124472 7.310000e-50 209.0
26 TraesCS5D01G156100 chr4A 93.571 140 8 1 6235 6374 520182070 520181932 2.630000e-49 207.0
27 TraesCS5D01G156100 chr7B 92.254 142 10 1 6232 6373 108491014 108491154 4.400000e-47 200.0
28 TraesCS5D01G156100 chr3B 92.806 139 8 2 6246 6383 583843955 583843818 4.400000e-47 200.0
29 TraesCS5D01G156100 chr3B 91.011 89 8 0 5955 6043 256200743 256200655 3.520000e-23 121.0
30 TraesCS5D01G156100 chr3B 74.854 171 37 3 2759 2926 738314706 738314873 1.000000e-08 73.1
31 TraesCS5D01G156100 chr2D 98.750 80 1 0 5364 5443 10777147 10777226 7.520000e-30 143.0
32 TraesCS5D01G156100 chr3A 91.667 84 7 0 5957 6040 265542791 265542708 4.560000e-22 117.0
33 TraesCS5D01G156100 chr2B 94.667 75 3 1 5955 6028 214829043 214828969 1.640000e-21 115.0
34 TraesCS5D01G156100 chr1D 88.172 93 10 1 5952 6043 111518775 111518867 7.630000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G156100 chr5D 244368830 244376019 7189 True 4506.666667 13278 98.122000 1 7190 3 chr5D.!!$R2 7189
1 TraesCS5D01G156100 chr5A 328718063 328727774 9711 True 1580.171429 3507 93.921286 3 7190 7 chr5A.!!$R3 7187
2 TraesCS5D01G156100 chr5B 277637269 277644091 6822 True 2030.000000 3293 93.451200 101 7190 5 chr5B.!!$R1 7089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
748 792 0.098728 GTGGCGTTCCGGATGAAATG 59.901 55.0 4.15 0.0 33.94 2.32 F
915 974 0.794229 ATTTGCGCATCGTGCTTTCG 60.794 50.0 12.75 0.0 42.25 3.46 F
2100 2160 0.684535 TGAGTGGAACAATGAGCGGA 59.315 50.0 0.00 0.0 44.16 5.54 F
3859 3920 0.037326 TACGCTGCAGACCAGGAAAG 60.037 55.0 20.43 0.0 42.03 2.62 F
5583 8443 0.034574 ATGCCCGTCATGGTGCTTTA 60.035 50.0 0.00 0.0 35.60 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2153 0.684535 TCCACTCATTGTTCCGCTCA 59.315 50.000 0.0 0.0 0.00 4.26 R
2126 2186 1.067142 AGCTCGTTGTTCCGCTCATTA 60.067 47.619 0.0 0.0 0.00 1.90 R
4093 6925 0.991920 GTGGTTTCCCCAGGAGATGA 59.008 55.000 0.0 0.0 46.45 2.92 R
5842 8703 0.242017 GTGCTCGGCAGAAAATTGCT 59.758 50.000 0.0 0.0 43.57 3.91 R
7142 10041 0.035439 GAGATGAAAAGGCACGGGGA 60.035 55.000 0.0 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 2.694760 GGCCTTGCCTTCTCTTGCG 61.695 63.158 0.00 0.00 46.69 4.85
142 149 2.092158 TCCCATGCAAATCAACGGGATA 60.092 45.455 0.00 0.00 42.41 2.59
167 174 1.344953 ATGTAGGATGCAAGCGGGGA 61.345 55.000 0.00 0.00 31.62 4.81
185 192 2.048312 GAAATTAGGGCGCGTGCTCC 62.048 60.000 19.09 18.16 45.33 4.70
214 221 4.592192 CGCGAGTGATGCCCCGAT 62.592 66.667 0.00 0.00 0.00 4.18
215 222 2.663188 GCGAGTGATGCCCCGATC 60.663 66.667 0.00 0.00 0.00 3.69
218 225 0.598680 CGAGTGATGCCCCGATCTTC 60.599 60.000 0.00 0.00 0.00 2.87
219 226 0.598680 GAGTGATGCCCCGATCTTCG 60.599 60.000 0.00 0.00 40.07 3.79
220 227 2.108976 TGATGCCCCGATCTTCGC 59.891 61.111 0.00 0.00 38.82 4.70
221 228 2.423446 GATGCCCCGATCTTCGCT 59.577 61.111 0.00 0.00 38.82 4.93
222 229 1.227674 GATGCCCCGATCTTCGCTT 60.228 57.895 0.00 0.00 38.82 4.68
223 230 0.815615 GATGCCCCGATCTTCGCTTT 60.816 55.000 0.00 0.00 38.82 3.51
224 231 0.394352 ATGCCCCGATCTTCGCTTTT 60.394 50.000 0.00 0.00 38.82 2.27
270 279 6.379133 TCTGTTGTATCCGATTACCAAGTACT 59.621 38.462 0.00 0.00 0.00 2.73
272 281 6.071221 TGTTGTATCCGATTACCAAGTACTGT 60.071 38.462 0.00 0.00 0.00 3.55
350 360 1.071019 CTGCTTCTGCTGCAATTGCG 61.071 55.000 24.58 19.32 40.13 4.85
358 368 2.416547 CTGCTGCAATTGCGTAGTACTT 59.583 45.455 24.58 0.00 45.83 2.24
389 399 7.295322 TGTTTGGTTCCATCATTAATTGTGA 57.705 32.000 0.00 0.00 0.00 3.58
443 459 9.395707 GTTTTACTATGAGGTGATATACGACTG 57.604 37.037 0.00 0.00 0.00 3.51
450 471 2.288273 GGTGATATACGACTGACTGGGC 60.288 54.545 0.00 0.00 0.00 5.36
463 484 2.307392 TGACTGGGCCTTGCAGTAATTA 59.693 45.455 12.49 0.00 0.00 1.40
464 485 3.053693 TGACTGGGCCTTGCAGTAATTAT 60.054 43.478 12.49 0.00 0.00 1.28
465 486 3.290710 ACTGGGCCTTGCAGTAATTATG 58.709 45.455 11.03 0.00 0.00 1.90
466 487 3.290710 CTGGGCCTTGCAGTAATTATGT 58.709 45.455 4.53 0.00 0.00 2.29
467 488 3.701040 CTGGGCCTTGCAGTAATTATGTT 59.299 43.478 4.53 0.00 0.00 2.71
468 489 4.093011 TGGGCCTTGCAGTAATTATGTTT 58.907 39.130 4.53 0.00 0.00 2.83
469 490 5.265191 TGGGCCTTGCAGTAATTATGTTTA 58.735 37.500 4.53 0.00 0.00 2.01
470 491 5.359576 TGGGCCTTGCAGTAATTATGTTTAG 59.640 40.000 4.53 0.00 0.00 1.85
471 492 5.359860 GGGCCTTGCAGTAATTATGTTTAGT 59.640 40.000 0.84 0.00 0.00 2.24
472 493 6.265577 GGCCTTGCAGTAATTATGTTTAGTG 58.734 40.000 0.00 0.00 36.17 2.74
473 494 6.127730 GGCCTTGCAGTAATTATGTTTAGTGT 60.128 38.462 0.00 0.00 35.72 3.55
474 495 7.066525 GGCCTTGCAGTAATTATGTTTAGTGTA 59.933 37.037 0.00 0.00 35.72 2.90
475 496 7.908601 GCCTTGCAGTAATTATGTTTAGTGTAC 59.091 37.037 0.00 0.00 35.72 2.90
476 497 9.162764 CCTTGCAGTAATTATGTTTAGTGTACT 57.837 33.333 0.00 0.00 35.72 2.73
509 530 8.562949 AGGGGTATTATGTTTAGTGTACTGAT 57.437 34.615 0.00 0.00 0.00 2.90
522 563 6.349973 AGTGTACTGATATGTTGAATTGCG 57.650 37.500 0.00 0.00 0.00 4.85
748 792 0.098728 GTGGCGTTCCGGATGAAATG 59.901 55.000 4.15 0.00 33.94 2.32
827 876 5.648178 ACAACTTGCTTCATATCAATGCA 57.352 34.783 0.00 0.00 32.76 3.96
915 974 0.794229 ATTTGCGCATCGTGCTTTCG 60.794 50.000 12.75 0.00 42.25 3.46
972 1031 2.480802 TCGCGCTGCACTTTGTTTAATA 59.519 40.909 5.56 0.00 0.00 0.98
1236 1296 6.424812 TCATACAAAGAAGTGACATGTCTGTG 59.575 38.462 25.55 13.08 35.14 3.66
1239 1299 5.415701 ACAAAGAAGTGACATGTCTGTGTTT 59.584 36.000 25.55 17.02 36.63 2.83
1262 1322 1.195115 AGAGCGTATGCCTTCTCCAA 58.805 50.000 2.51 0.00 44.31 3.53
1347 1407 9.590088 GAATTCAGATTTTTGAAATCAGTTTGC 57.410 29.630 13.92 0.00 40.21 3.68
1667 1727 1.667236 TCTAGGTTGCAATGCGGATG 58.333 50.000 0.59 0.00 0.00 3.51
2087 2147 3.822735 ACAATGAGTGGAACAATGAGTGG 59.177 43.478 0.00 0.00 40.17 4.00
2088 2148 4.074259 CAATGAGTGGAACAATGAGTGGA 58.926 43.478 0.00 0.00 44.16 4.02
2089 2149 3.855255 TGAGTGGAACAATGAGTGGAA 57.145 42.857 0.00 0.00 44.16 3.53
2090 2150 3.476552 TGAGTGGAACAATGAGTGGAAC 58.523 45.455 0.00 0.00 44.16 3.62
2091 2151 3.118075 TGAGTGGAACAATGAGTGGAACA 60.118 43.478 0.00 0.00 44.16 3.18
2092 2152 3.882888 GAGTGGAACAATGAGTGGAACAA 59.117 43.478 0.00 0.00 40.90 2.83
2093 2153 4.473444 AGTGGAACAATGAGTGGAACAAT 58.527 39.130 0.00 0.00 40.90 2.71
2094 2154 4.279169 AGTGGAACAATGAGTGGAACAATG 59.721 41.667 0.00 0.00 40.90 2.82
2095 2155 4.278170 GTGGAACAATGAGTGGAACAATGA 59.722 41.667 0.00 0.00 40.90 2.57
2096 2156 4.520111 TGGAACAATGAGTGGAACAATGAG 59.480 41.667 0.00 0.00 35.01 2.90
2097 2157 4.479619 GAACAATGAGTGGAACAATGAGC 58.520 43.478 0.00 0.00 44.16 4.26
2098 2158 2.485426 ACAATGAGTGGAACAATGAGCG 59.515 45.455 0.00 0.00 44.16 5.03
2099 2159 1.742761 ATGAGTGGAACAATGAGCGG 58.257 50.000 0.00 0.00 44.16 5.52
2100 2160 0.684535 TGAGTGGAACAATGAGCGGA 59.315 50.000 0.00 0.00 44.16 5.54
2101 2161 1.071542 TGAGTGGAACAATGAGCGGAA 59.928 47.619 0.00 0.00 44.16 4.30
2102 2162 1.464997 GAGTGGAACAATGAGCGGAAC 59.535 52.381 0.00 0.00 44.16 3.62
2103 2163 1.202758 AGTGGAACAATGAGCGGAACA 60.203 47.619 0.00 0.00 44.16 3.18
2104 2164 1.606668 GTGGAACAATGAGCGGAACAA 59.393 47.619 0.00 0.00 44.16 2.83
2105 2165 2.228822 GTGGAACAATGAGCGGAACAAT 59.771 45.455 0.00 0.00 44.16 2.71
2106 2166 2.228582 TGGAACAATGAGCGGAACAATG 59.771 45.455 0.00 0.00 31.92 2.82
2107 2167 2.487762 GGAACAATGAGCGGAACAATGA 59.512 45.455 0.00 0.00 0.00 2.57
2108 2168 3.426695 GGAACAATGAGCGGAACAATGAG 60.427 47.826 0.00 0.00 0.00 2.90
2109 2169 2.783135 ACAATGAGCGGAACAATGAGT 58.217 42.857 0.00 0.00 0.00 3.41
2110 2170 2.485426 ACAATGAGCGGAACAATGAGTG 59.515 45.455 0.00 0.00 0.00 3.51
2111 2171 1.742761 ATGAGCGGAACAATGAGTGG 58.257 50.000 0.00 0.00 0.00 4.00
2112 2172 0.684535 TGAGCGGAACAATGAGTGGA 59.315 50.000 0.00 0.00 0.00 4.02
2113 2173 1.071542 TGAGCGGAACAATGAGTGGAA 59.928 47.619 0.00 0.00 0.00 3.53
2114 2174 1.464997 GAGCGGAACAATGAGTGGAAC 59.535 52.381 0.00 0.00 0.00 3.62
2115 2175 1.202758 AGCGGAACAATGAGTGGAACA 60.203 47.619 0.00 0.00 41.43 3.18
2116 2176 1.606668 GCGGAACAATGAGTGGAACAA 59.393 47.619 0.00 0.00 44.16 2.83
2117 2177 2.228822 GCGGAACAATGAGTGGAACAAT 59.771 45.455 0.00 0.00 44.16 2.71
2118 2178 3.825308 CGGAACAATGAGTGGAACAATG 58.175 45.455 0.00 0.00 44.16 2.82
2119 2179 3.501828 CGGAACAATGAGTGGAACAATGA 59.498 43.478 0.00 0.00 44.16 2.57
2120 2180 4.378770 CGGAACAATGAGTGGAACAATGAG 60.379 45.833 0.00 0.00 44.16 2.90
2121 2181 4.520492 GGAACAATGAGTGGAACAATGAGT 59.480 41.667 0.00 0.00 44.16 3.41
2122 2182 5.443185 AACAATGAGTGGAACAATGAGTG 57.557 39.130 0.00 0.00 41.73 3.51
2126 2186 4.371624 TGAGTGGAACAATGAGTGGAAT 57.628 40.909 0.00 0.00 44.16 3.01
2483 2543 1.779221 TTTATGCCAATGGAGCTGGG 58.221 50.000 2.05 0.00 34.25 4.45
2855 2916 3.737850 AGCAGGTATCTCTAAATGCTGC 58.262 45.455 0.00 0.00 42.11 5.25
2950 3011 7.283127 AGTTGATCATAGCGTTAATTCATGGTT 59.717 33.333 0.00 0.00 0.00 3.67
2951 3012 6.958255 TGATCATAGCGTTAATTCATGGTTG 58.042 36.000 0.00 0.00 0.00 3.77
2952 3013 5.749596 TCATAGCGTTAATTCATGGTTGG 57.250 39.130 0.00 0.00 0.00 3.77
2953 3014 5.189928 TCATAGCGTTAATTCATGGTTGGT 58.810 37.500 0.00 0.00 0.00 3.67
3162 3223 2.079925 GGAGTGAATGACAGGTTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
3800 3861 6.173339 TGTCATCCTTGATTCAACTTACCTC 58.827 40.000 0.00 0.00 33.56 3.85
3851 3912 4.600012 AATTGTTGTATACGCTGCAGAC 57.400 40.909 20.43 6.73 0.00 3.51
3859 3920 0.037326 TACGCTGCAGACCAGGAAAG 60.037 55.000 20.43 0.00 42.03 2.62
4072 4136 5.536538 CAGTTACAGATAGAGCCTCCATGTA 59.463 44.000 0.00 0.00 0.00 2.29
4073 4137 5.536916 AGTTACAGATAGAGCCTCCATGTAC 59.463 44.000 0.00 0.00 0.00 2.90
4074 4138 3.235200 ACAGATAGAGCCTCCATGTACC 58.765 50.000 0.00 0.00 0.00 3.34
4076 4140 3.643320 CAGATAGAGCCTCCATGTACCAA 59.357 47.826 0.00 0.00 0.00 3.67
4077 4141 3.643792 AGATAGAGCCTCCATGTACCAAC 59.356 47.826 0.00 0.00 0.00 3.77
4078 4142 1.958288 AGAGCCTCCATGTACCAACT 58.042 50.000 0.00 0.00 0.00 3.16
4080 4144 2.237392 AGAGCCTCCATGTACCAACTTC 59.763 50.000 0.00 0.00 0.00 3.01
4081 4145 1.985159 AGCCTCCATGTACCAACTTCA 59.015 47.619 0.00 0.00 0.00 3.02
4085 4149 3.200825 CCTCCATGTACCAACTTCATCCT 59.799 47.826 0.00 0.00 0.00 3.24
4093 6925 2.904434 ACCAACTTCATCCTTAGTCGGT 59.096 45.455 0.00 0.00 26.89 4.69
4393 7234 6.846325 AAGTCTTCTGTAAGGAAAGAAACG 57.154 37.500 0.00 0.00 32.23 3.60
4414 7255 2.290960 GGGGGCTCCGCTAATTCATTAT 60.291 50.000 0.00 0.00 33.42 1.28
4472 7313 4.081420 GCAGGGAGACAGTCTCTTATTCAA 60.081 45.833 26.51 0.00 42.95 2.69
4550 7398 2.040278 TGGTCTCCACTGCTTATTTGCT 59.960 45.455 0.00 0.00 0.00 3.91
4606 7454 9.448294 CTAGCGAAACTCGTTAGTATCTTTTAT 57.552 33.333 10.62 0.00 44.83 1.40
4857 7708 1.825474 AGCGCTTTTCTCTAGCTGGTA 59.175 47.619 2.64 0.00 36.73 3.25
5058 7909 6.430962 AGAGCACATATCATAACTCATGGT 57.569 37.500 0.00 0.00 35.16 3.55
5076 7927 8.924303 ACTCATGGTTTAGTGCATATTACTCTA 58.076 33.333 0.00 0.00 0.00 2.43
5083 7934 7.997773 TTAGTGCATATTACTCTATCGACCT 57.002 36.000 0.00 0.00 0.00 3.85
5105 7956 4.389374 TCCTTTTCGAGCAACAGAGAAAT 58.611 39.130 0.00 0.00 33.37 2.17
5167 8019 3.863424 ACTGAGTAATTGCACGGTATTCG 59.137 43.478 3.73 0.00 45.88 3.34
5441 8293 6.699575 AATTGTAGAATGTGGGCATCTAAC 57.300 37.500 0.00 0.00 33.50 2.34
5463 8315 7.576861 AACTAAGTCTCTGGTATAGCTCTTC 57.423 40.000 3.20 0.00 0.00 2.87
5464 8316 6.664714 ACTAAGTCTCTGGTATAGCTCTTCA 58.335 40.000 3.20 0.00 0.00 3.02
5467 8319 5.454062 AGTCTCTGGTATAGCTCTTCATGT 58.546 41.667 3.20 0.00 0.00 3.21
5468 8320 5.534654 AGTCTCTGGTATAGCTCTTCATGTC 59.465 44.000 3.20 0.00 0.00 3.06
5470 8322 6.015519 GTCTCTGGTATAGCTCTTCATGTCAT 60.016 42.308 3.20 0.00 0.00 3.06
5476 8335 7.233348 TGGTATAGCTCTTCATGTCATATCACA 59.767 37.037 3.20 0.00 0.00 3.58
5486 8345 3.040477 TGTCATATCACAGGGATCAGCA 58.960 45.455 0.00 0.00 37.44 4.41
5488 8347 4.001652 GTCATATCACAGGGATCAGCATG 58.998 47.826 0.00 0.00 37.44 4.06
5509 8368 2.102070 ATTTTGTACGATGTCGGCCA 57.898 45.000 2.24 0.17 44.95 5.36
5510 8369 2.102070 TTTTGTACGATGTCGGCCAT 57.898 45.000 2.24 0.00 44.95 4.40
5511 8370 1.647346 TTTGTACGATGTCGGCCATC 58.353 50.000 2.24 0.00 45.50 3.51
5512 8371 0.821517 TTGTACGATGTCGGCCATCT 59.178 50.000 2.24 4.72 46.56 2.90
5513 8372 1.682740 TGTACGATGTCGGCCATCTA 58.317 50.000 2.24 0.00 46.56 1.98
5515 8374 2.626266 TGTACGATGTCGGCCATCTAAT 59.374 45.455 2.24 0.00 46.56 1.73
5516 8375 2.440539 ACGATGTCGGCCATCTAATC 57.559 50.000 2.24 0.00 46.56 1.75
5517 8376 1.964223 ACGATGTCGGCCATCTAATCT 59.036 47.619 2.24 0.00 46.56 2.40
5518 8377 2.288457 ACGATGTCGGCCATCTAATCTG 60.288 50.000 2.24 0.00 46.56 2.90
5521 8381 3.179443 TGTCGGCCATCTAATCTGAAC 57.821 47.619 2.24 0.00 0.00 3.18
5540 8400 8.197988 TCTGAACTTTTGTTTTACTGACTCTC 57.802 34.615 0.00 0.00 43.66 3.20
5542 8402 6.592607 TGAACTTTTGTTTTACTGACTCTCGT 59.407 34.615 0.00 0.00 43.66 4.18
5557 8417 5.870433 TGACTCTCGTTACAACTGAAAACAA 59.130 36.000 0.00 0.00 0.00 2.83
5582 8442 1.304381 ATGCCCGTCATGGTGCTTT 60.304 52.632 0.00 0.00 35.60 3.51
5583 8443 0.034574 ATGCCCGTCATGGTGCTTTA 60.035 50.000 0.00 0.00 35.60 1.85
5589 8449 2.487762 CCGTCATGGTGCTTTACAATGT 59.512 45.455 0.00 0.00 40.88 2.71
5740 8601 0.471617 ACCACTCTTCAGCTGTGCTT 59.528 50.000 14.67 0.00 36.40 3.91
5758 8619 2.905075 CTTGGTGGCTCGATATTCACA 58.095 47.619 8.89 0.00 32.29 3.58
5832 8693 5.125417 GCTACACCCAGATGCAATTTTCTTA 59.875 40.000 0.00 0.00 0.00 2.10
5833 8694 5.391312 ACACCCAGATGCAATTTTCTTAC 57.609 39.130 0.00 0.00 0.00 2.34
5834 8695 4.832266 ACACCCAGATGCAATTTTCTTACA 59.168 37.500 0.00 0.00 0.00 2.41
5835 8696 5.304101 ACACCCAGATGCAATTTTCTTACAA 59.696 36.000 0.00 0.00 0.00 2.41
5836 8697 6.014327 ACACCCAGATGCAATTTTCTTACAAT 60.014 34.615 0.00 0.00 0.00 2.71
5837 8698 6.311935 CACCCAGATGCAATTTTCTTACAATG 59.688 38.462 0.00 0.00 0.00 2.82
5838 8699 6.014327 ACCCAGATGCAATTTTCTTACAATGT 60.014 34.615 0.00 0.00 0.00 2.71
5839 8700 6.532657 CCCAGATGCAATTTTCTTACAATGTC 59.467 38.462 0.00 0.00 0.00 3.06
5840 8701 6.532657 CCAGATGCAATTTTCTTACAATGTCC 59.467 38.462 0.00 0.00 0.00 4.02
5841 8702 7.092079 CAGATGCAATTTTCTTACAATGTCCA 58.908 34.615 0.00 0.00 0.00 4.02
5842 8703 7.599621 CAGATGCAATTTTCTTACAATGTCCAA 59.400 33.333 0.00 0.00 0.00 3.53
5871 8732 3.125607 CCGAGCACCATACGGCTA 58.874 61.111 0.00 0.00 41.22 3.93
5872 8733 1.440060 CCGAGCACCATACGGCTAA 59.560 57.895 0.00 0.00 41.22 3.09
5873 8734 0.874607 CCGAGCACCATACGGCTAAC 60.875 60.000 0.00 0.00 41.22 2.34
5874 8735 0.179121 CGAGCACCATACGGCTAACA 60.179 55.000 0.00 0.00 41.22 2.41
5905 8771 6.842280 TCCAACCTACATTACTGCCTAGATTA 59.158 38.462 0.00 0.00 0.00 1.75
5906 8772 7.512746 TCCAACCTACATTACTGCCTAGATTAT 59.487 37.037 0.00 0.00 0.00 1.28
5907 8773 7.819900 CCAACCTACATTACTGCCTAGATTATC 59.180 40.741 0.00 0.00 0.00 1.75
5908 8774 7.483580 ACCTACATTACTGCCTAGATTATCC 57.516 40.000 0.00 0.00 0.00 2.59
5909 8775 7.249715 ACCTACATTACTGCCTAGATTATCCT 58.750 38.462 0.00 0.00 0.00 3.24
5938 8804 5.545658 TCAGCCGTTTTATCACTTGATTC 57.454 39.130 0.00 0.00 36.05 2.52
5958 8824 3.575630 TCTCTCGCTGTTTGATGTGTAC 58.424 45.455 0.00 0.00 0.00 2.90
5960 8826 3.575630 TCTCGCTGTTTGATGTGTACTC 58.424 45.455 0.00 0.00 0.00 2.59
5961 8827 2.668457 CTCGCTGTTTGATGTGTACTCC 59.332 50.000 0.00 0.00 0.00 3.85
5962 8828 1.732259 CGCTGTTTGATGTGTACTCCC 59.268 52.381 0.00 0.00 0.00 4.30
5963 8829 2.612972 CGCTGTTTGATGTGTACTCCCT 60.613 50.000 0.00 0.00 0.00 4.20
5964 8830 3.003480 GCTGTTTGATGTGTACTCCCTC 58.997 50.000 0.00 0.00 0.00 4.30
5965 8831 3.307059 GCTGTTTGATGTGTACTCCCTCT 60.307 47.826 0.00 0.00 0.00 3.69
5966 8832 4.248859 CTGTTTGATGTGTACTCCCTCTG 58.751 47.826 0.00 0.00 0.00 3.35
5967 8833 3.646162 TGTTTGATGTGTACTCCCTCTGT 59.354 43.478 0.00 0.00 0.00 3.41
5968 8834 4.836175 TGTTTGATGTGTACTCCCTCTGTA 59.164 41.667 0.00 0.00 0.00 2.74
5969 8835 5.305902 TGTTTGATGTGTACTCCCTCTGTAA 59.694 40.000 0.00 0.00 0.00 2.41
5970 8836 6.183361 TGTTTGATGTGTACTCCCTCTGTAAA 60.183 38.462 0.00 0.00 0.00 2.01
5971 8837 5.661056 TGATGTGTACTCCCTCTGTAAAG 57.339 43.478 0.00 0.00 0.00 1.85
5972 8838 5.330233 TGATGTGTACTCCCTCTGTAAAGA 58.670 41.667 0.00 0.00 0.00 2.52
5973 8839 5.778241 TGATGTGTACTCCCTCTGTAAAGAA 59.222 40.000 0.00 0.00 0.00 2.52
5974 8840 6.269077 TGATGTGTACTCCCTCTGTAAAGAAA 59.731 38.462 0.00 0.00 0.00 2.52
5975 8841 6.681729 TGTGTACTCCCTCTGTAAAGAAAT 57.318 37.500 0.00 0.00 0.00 2.17
5976 8842 7.786046 TGTGTACTCCCTCTGTAAAGAAATA 57.214 36.000 0.00 0.00 0.00 1.40
5977 8843 8.375493 TGTGTACTCCCTCTGTAAAGAAATAT 57.625 34.615 0.00 0.00 0.00 1.28
5978 8844 9.483489 TGTGTACTCCCTCTGTAAAGAAATATA 57.517 33.333 0.00 0.00 0.00 0.86
5984 8850 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
5985 8851 9.144298 TCCCTCTGTAAAGAAATATAAGATCGT 57.856 33.333 0.00 0.00 0.00 3.73
5986 8852 9.765795 CCCTCTGTAAAGAAATATAAGATCGTT 57.234 33.333 0.00 0.00 0.00 3.85
6004 8870 5.638596 TCGTTTAGATCACTACTTGCTGA 57.361 39.130 0.00 0.00 0.00 4.26
6005 8871 6.208988 TCGTTTAGATCACTACTTGCTGAT 57.791 37.500 0.00 0.00 0.00 2.90
6006 8872 6.266323 TCGTTTAGATCACTACTTGCTGATC 58.734 40.000 0.00 3.76 42.16 2.92
6012 8878 6.503616 GATCACTACTTGCTGATCTAAACG 57.496 41.667 4.57 0.00 39.76 3.60
6013 8879 4.174009 TCACTACTTGCTGATCTAAACGC 58.826 43.478 0.00 0.00 0.00 4.84
6014 8880 4.082190 TCACTACTTGCTGATCTAAACGCT 60.082 41.667 0.00 0.00 0.00 5.07
6015 8881 4.266502 CACTACTTGCTGATCTAAACGCTC 59.733 45.833 0.00 0.00 0.00 5.03
6016 8882 3.601443 ACTTGCTGATCTAAACGCTCT 57.399 42.857 0.00 0.00 0.00 4.09
6017 8883 3.931578 ACTTGCTGATCTAAACGCTCTT 58.068 40.909 0.00 0.00 0.00 2.85
6018 8884 5.073311 ACTTGCTGATCTAAACGCTCTTA 57.927 39.130 0.00 0.00 0.00 2.10
6019 8885 5.665459 ACTTGCTGATCTAAACGCTCTTAT 58.335 37.500 0.00 0.00 0.00 1.73
6020 8886 6.806751 ACTTGCTGATCTAAACGCTCTTATA 58.193 36.000 0.00 0.00 0.00 0.98
6021 8887 7.437748 ACTTGCTGATCTAAACGCTCTTATAT 58.562 34.615 0.00 0.00 0.00 0.86
6022 8888 7.928706 ACTTGCTGATCTAAACGCTCTTATATT 59.071 33.333 0.00 0.00 0.00 1.28
6023 8889 8.662781 TTGCTGATCTAAACGCTCTTATATTT 57.337 30.769 0.00 0.00 0.00 1.40
6024 8890 8.299262 TGCTGATCTAAACGCTCTTATATTTC 57.701 34.615 0.00 0.00 0.00 2.17
6025 8891 8.144478 TGCTGATCTAAACGCTCTTATATTTCT 58.856 33.333 0.00 0.00 0.00 2.52
6026 8892 8.983724 GCTGATCTAAACGCTCTTATATTTCTT 58.016 33.333 0.00 0.00 0.00 2.52
6029 8895 9.587461 GATCTAAACGCTCTTATATTTCTTTGC 57.413 33.333 0.00 0.00 0.00 3.68
6030 8896 8.487313 TCTAAACGCTCTTATATTTCTTTGCA 57.513 30.769 0.00 0.00 0.00 4.08
6031 8897 8.941977 TCTAAACGCTCTTATATTTCTTTGCAA 58.058 29.630 0.00 0.00 0.00 4.08
6032 8898 9.214953 CTAAACGCTCTTATATTTCTTTGCAAG 57.785 33.333 0.00 0.00 0.00 4.01
6033 8899 6.124088 ACGCTCTTATATTTCTTTGCAAGG 57.876 37.500 1.35 1.35 0.00 3.61
6034 8900 5.066505 ACGCTCTTATATTTCTTTGCAAGGG 59.933 40.000 8.88 2.01 0.00 3.95
6035 8901 5.506317 CGCTCTTATATTTCTTTGCAAGGGG 60.506 44.000 8.88 0.00 0.00 4.79
6036 8902 5.594317 GCTCTTATATTTCTTTGCAAGGGGA 59.406 40.000 8.88 1.95 0.00 4.81
6037 8903 6.238869 GCTCTTATATTTCTTTGCAAGGGGAG 60.239 42.308 8.88 0.00 0.00 4.30
6038 8904 6.731467 TCTTATATTTCTTTGCAAGGGGAGT 58.269 36.000 8.88 0.00 0.00 3.85
6039 8905 7.867921 TCTTATATTTCTTTGCAAGGGGAGTA 58.132 34.615 8.88 0.40 0.00 2.59
6040 8906 7.993183 TCTTATATTTCTTTGCAAGGGGAGTAG 59.007 37.037 8.88 0.00 0.00 2.57
6058 8924 5.179555 GGAGTAGTTCTCAGAAAAATTGCGT 59.820 40.000 0.00 0.00 44.40 5.24
6066 8932 6.680810 TCTCAGAAAAATTGCGTTGATCAAT 58.319 32.000 12.12 0.00 35.83 2.57
6078 8944 4.744631 GCGTTGATCAATTGTTGAAACCTT 59.255 37.500 12.12 0.00 43.95 3.50
6152 9018 4.636206 GGTGAATACAGGGATGAAGTCAAC 59.364 45.833 0.00 0.00 0.00 3.18
6248 9125 9.377312 CCGAACCTATACCTACTATCTAAGTAC 57.623 40.741 0.00 0.00 39.80 2.73
6252 9129 9.056799 ACCTATACCTACTATCTAAGTACTCCC 57.943 40.741 0.00 0.00 39.80 4.30
6253 9130 9.282905 CCTATACCTACTATCTAAGTACTCCCT 57.717 40.741 0.00 0.00 39.80 4.20
6255 9132 6.452757 ACCTACTATCTAAGTACTCCCTCC 57.547 45.833 0.00 0.00 39.80 4.30
6256 9133 5.012975 ACCTACTATCTAAGTACTCCCTCCG 59.987 48.000 0.00 0.00 39.80 4.63
6257 9134 5.012975 CCTACTATCTAAGTACTCCCTCCGT 59.987 48.000 0.00 0.00 39.80 4.69
6258 9135 4.971939 ACTATCTAAGTACTCCCTCCGTC 58.028 47.826 0.00 0.00 36.36 4.79
6259 9136 2.725221 TCTAAGTACTCCCTCCGTCC 57.275 55.000 0.00 0.00 0.00 4.79
6260 9137 1.213926 TCTAAGTACTCCCTCCGTCCC 59.786 57.143 0.00 0.00 0.00 4.46
6261 9138 0.107017 TAAGTACTCCCTCCGTCCCG 60.107 60.000 0.00 0.00 0.00 5.14
6262 9139 1.856539 AAGTACTCCCTCCGTCCCGA 61.857 60.000 0.00 0.00 0.00 5.14
6263 9140 1.379044 GTACTCCCTCCGTCCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
6264 9141 0.967380 GTACTCCCTCCGTCCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
6265 9142 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
6266 9143 0.032813 ACTCCCTCCGTCCCGAAATA 60.033 55.000 0.00 0.00 0.00 1.40
6267 9144 0.388294 CTCCCTCCGTCCCGAAATAC 59.612 60.000 0.00 0.00 0.00 1.89
6268 9145 0.032813 TCCCTCCGTCCCGAAATACT 60.033 55.000 0.00 0.00 0.00 2.12
6269 9146 0.828677 CCCTCCGTCCCGAAATACTT 59.171 55.000 0.00 0.00 0.00 2.24
6270 9147 1.472728 CCCTCCGTCCCGAAATACTTG 60.473 57.143 0.00 0.00 0.00 3.16
6271 9148 1.206371 CCTCCGTCCCGAAATACTTGT 59.794 52.381 0.00 0.00 0.00 3.16
6272 9149 2.537401 CTCCGTCCCGAAATACTTGTC 58.463 52.381 0.00 0.00 0.00 3.18
6273 9150 1.894466 TCCGTCCCGAAATACTTGTCA 59.106 47.619 0.00 0.00 0.00 3.58
6274 9151 2.498481 TCCGTCCCGAAATACTTGTCAT 59.502 45.455 0.00 0.00 0.00 3.06
6275 9152 2.864343 CCGTCCCGAAATACTTGTCATC 59.136 50.000 0.00 0.00 0.00 2.92
6276 9153 3.517602 CGTCCCGAAATACTTGTCATCA 58.482 45.455 0.00 0.00 0.00 3.07
6277 9154 3.930229 CGTCCCGAAATACTTGTCATCAA 59.070 43.478 0.00 0.00 0.00 2.57
6278 9155 4.390603 CGTCCCGAAATACTTGTCATCAAA 59.609 41.667 0.00 0.00 32.87 2.69
6279 9156 5.106869 CGTCCCGAAATACTTGTCATCAAAA 60.107 40.000 0.00 0.00 32.87 2.44
6280 9157 6.403200 CGTCCCGAAATACTTGTCATCAAAAT 60.403 38.462 0.00 0.00 32.87 1.82
6281 9158 6.747280 GTCCCGAAATACTTGTCATCAAAATG 59.253 38.462 0.00 0.00 32.87 2.32
6282 9159 6.035843 CCCGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
6283 9160 6.127758 CCCGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
6284 9161 6.747280 CCGAAATACTTGTCATCAAAATGGAC 59.253 38.462 0.00 0.00 33.42 4.02
6285 9162 7.304735 CGAAATACTTGTCATCAAAATGGACA 58.695 34.615 0.00 0.00 33.42 4.02
6286 9163 7.807433 CGAAATACTTGTCATCAAAATGGACAA 59.193 33.333 0.00 0.00 34.59 3.18
6287 9164 9.474920 GAAATACTTGTCATCAAAATGGACAAA 57.525 29.630 7.70 0.00 34.98 2.83
6288 9165 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
6289 9166 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
6338 9215 9.607333 ATGTCTAGATACATCTCCTTTTATCCA 57.393 33.333 0.00 0.00 35.08 3.41
6339 9216 9.607333 TGTCTAGATACATCTCCTTTTATCCAT 57.393 33.333 0.00 0.00 38.32 3.41
6347 9224 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
6348 9225 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
6349 9226 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
6350 9227 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
6351 9228 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
6352 9229 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
6353 9230 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
6359 9236 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
6360 9237 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
6361 9238 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
6362 9239 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
6363 9240 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
6364 9241 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
6365 9242 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
6366 9243 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
6367 9244 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6368 9245 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6369 9246 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6370 9247 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
6371 9248 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
6372 9249 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
6373 9250 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
6374 9251 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
6375 9252 1.150992 CCGGACGGAGGGAGTATCT 59.849 63.158 4.40 0.00 37.50 1.98
6376 9253 0.890090 CCGGACGGAGGGAGTATCTC 60.890 65.000 4.40 0.00 37.50 2.75
6386 9263 3.934457 GGGAGTATCTCTCTAAGCTGC 57.066 52.381 0.00 0.00 42.40 5.25
6387 9264 3.496331 GGGAGTATCTCTCTAAGCTGCT 58.504 50.000 0.00 0.00 42.40 4.24
6486 9363 1.077858 GAAGCCCTTGCCTCCTGAG 60.078 63.158 0.00 0.00 38.69 3.35
6501 9378 0.319555 CTGAGCCGAGAAAACCGTCA 60.320 55.000 0.00 0.00 0.00 4.35
6502 9379 0.320374 TGAGCCGAGAAAACCGTCAT 59.680 50.000 0.00 0.00 0.00 3.06
6592 9470 6.096036 TGAAACTGAACTGAATTGCGAAAAA 58.904 32.000 0.00 0.00 0.00 1.94
6638 9516 6.551736 ACATTTGATTTGTTACCGTATGCTC 58.448 36.000 0.00 0.00 0.00 4.26
6645 9531 4.664150 TGTTACCGTATGCTCATGATCA 57.336 40.909 1.00 1.00 0.00 2.92
6677 9563 2.159310 TCGTTTGCCTTCCTGTTGTTTG 60.159 45.455 0.00 0.00 0.00 2.93
6721 9607 1.486310 ACACAGCAAGAGAACACCAGA 59.514 47.619 0.00 0.00 0.00 3.86
6875 9763 5.195848 ACTAGAACTGTAGAAGTAGGGCT 57.804 43.478 0.00 0.00 38.56 5.19
6876 9764 4.951094 ACTAGAACTGTAGAAGTAGGGCTG 59.049 45.833 0.00 0.00 38.56 4.85
6877 9765 3.100671 AGAACTGTAGAAGTAGGGCTGG 58.899 50.000 0.00 0.00 38.56 4.85
6878 9766 1.196012 ACTGTAGAAGTAGGGCTGGC 58.804 55.000 0.00 0.00 37.36 4.85
6889 9788 2.980233 GGCTGGCGTGCAGAAAGT 60.980 61.111 4.78 0.00 34.04 2.66
6921 9820 4.705507 AGATAGTAAAGAGGACGTGCAGAA 59.294 41.667 10.52 0.00 0.00 3.02
6950 9849 0.382873 TTACACGTCCCCATCGATCG 59.617 55.000 9.36 9.36 0.00 3.69
6955 9854 1.367471 GTCCCCATCGATCGCATCA 59.633 57.895 11.09 0.00 0.00 3.07
6958 9857 0.321034 CCCCATCGATCGCATCACAT 60.321 55.000 11.09 0.00 0.00 3.21
6960 9859 1.073964 CCATCGATCGCATCACATCC 58.926 55.000 11.09 0.00 0.00 3.51
6962 9861 0.681175 ATCGATCGCATCACATCCCA 59.319 50.000 11.09 0.00 0.00 4.37
7126 10025 0.465824 CCACCCTCTCCGACTACGAT 60.466 60.000 0.00 0.00 42.66 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.375140 CAGAAGCAGCCGCAAGAGA 60.375 57.895 0.00 0.00 42.27 3.10
66 67 2.633509 CCACCAAGCAGAAGCAGCC 61.634 63.158 0.00 0.00 45.49 4.85
98 105 4.735358 GAAGAACCGCCCCACCCC 62.735 72.222 0.00 0.00 0.00 4.95
109 116 2.091541 TGCATGGGAAATCCGAAGAAC 58.908 47.619 0.00 0.00 38.76 3.01
110 117 2.505650 TGCATGGGAAATCCGAAGAA 57.494 45.000 0.00 0.00 38.76 2.52
142 149 1.019673 CTTGCATCCTACATTGCGCT 58.980 50.000 9.73 0.00 41.80 5.92
167 174 2.112815 GGAGCACGCGCCCTAATTT 61.113 57.895 5.73 0.00 39.83 1.82
185 192 0.374758 CACTCGCGTGATGGAAATGG 59.625 55.000 16.04 0.00 43.97 3.16
230 237 4.012374 ACAACAGAGCATTCACAATAGGG 58.988 43.478 0.00 0.00 0.00 3.53
333 343 0.168788 TACGCAATTGCAGCAGAAGC 59.831 50.000 28.77 0.00 42.21 3.86
344 354 5.235516 ACAAGCTACAAGTACTACGCAATT 58.764 37.500 0.00 0.00 0.00 2.32
346 356 4.247267 ACAAGCTACAAGTACTACGCAA 57.753 40.909 0.00 0.00 0.00 4.85
348 358 4.143179 CCAAACAAGCTACAAGTACTACGC 60.143 45.833 0.00 0.00 0.00 4.42
350 360 6.073385 GGAACCAAACAAGCTACAAGTACTAC 60.073 42.308 0.00 0.00 0.00 2.73
358 368 3.826524 TGATGGAACCAAACAAGCTACA 58.173 40.909 0.00 0.00 0.00 2.74
443 459 1.839424 AATTACTGCAAGGCCCAGTC 58.161 50.000 15.44 0.00 42.22 3.51
450 471 9.162764 AGTACACTAAACATAATTACTGCAAGG 57.837 33.333 0.00 0.00 39.30 3.61
482 503 9.491406 TCAGTACACTAAACATAATACCCCTAA 57.509 33.333 0.00 0.00 0.00 2.69
483 504 9.664777 ATCAGTACACTAAACATAATACCCCTA 57.335 33.333 0.00 0.00 0.00 3.53
484 505 7.983166 TCAGTACACTAAACATAATACCCCT 57.017 36.000 0.00 0.00 0.00 4.79
497 518 7.547722 ACGCAATTCAACATATCAGTACACTAA 59.452 33.333 0.00 0.00 0.00 2.24
509 530 6.089476 CCAAACATGTACGCAATTCAACATA 58.911 36.000 0.00 0.00 31.55 2.29
522 563 4.319261 GGAACTGAACGACCAAACATGTAC 60.319 45.833 0.00 0.00 0.00 2.90
748 792 2.057137 TCCCCTATCTGCATGCAAAC 57.943 50.000 22.88 0.00 0.00 2.93
841 890 7.927048 ACTTAATTAGTTGTGTGAAGGTTCAC 58.073 34.615 14.73 14.73 45.23 3.18
872 921 4.067972 ACTAACACCGTGTCATCAGTTT 57.932 40.909 4.23 0.00 0.00 2.66
875 924 3.649073 TCAACTAACACCGTGTCATCAG 58.351 45.455 4.23 3.21 0.00 2.90
882 941 2.570169 CGCAAATCAACTAACACCGTG 58.430 47.619 0.00 0.00 0.00 4.94
972 1031 2.508526 AGCTGAGAACAAGCGGAAATT 58.491 42.857 0.00 0.00 0.00 1.82
1239 1299 3.196901 TGGAGAAGGCATACGCTCTAAAA 59.803 43.478 0.00 0.00 38.60 1.52
1262 1322 5.698089 CACAAGGTATCGTAGATGCATCAAT 59.302 40.000 27.81 16.71 45.12 2.57
1347 1407 9.102757 AGTTACATAAGTTAGTGCATGATTCAG 57.897 33.333 0.00 0.00 0.00 3.02
2087 2147 3.189287 ACTCATTGTTCCGCTCATTGTTC 59.811 43.478 0.00 0.00 0.00 3.18
2088 2148 3.058016 CACTCATTGTTCCGCTCATTGTT 60.058 43.478 0.00 0.00 0.00 2.83
2089 2149 2.485426 CACTCATTGTTCCGCTCATTGT 59.515 45.455 0.00 0.00 0.00 2.71
2090 2150 2.159476 CCACTCATTGTTCCGCTCATTG 60.159 50.000 0.00 0.00 0.00 2.82
2091 2151 2.086869 CCACTCATTGTTCCGCTCATT 58.913 47.619 0.00 0.00 0.00 2.57
2092 2152 1.278985 TCCACTCATTGTTCCGCTCAT 59.721 47.619 0.00 0.00 0.00 2.90
2093 2153 0.684535 TCCACTCATTGTTCCGCTCA 59.315 50.000 0.00 0.00 0.00 4.26
2094 2154 1.464997 GTTCCACTCATTGTTCCGCTC 59.535 52.381 0.00 0.00 0.00 5.03
2095 2155 1.202758 TGTTCCACTCATTGTTCCGCT 60.203 47.619 0.00 0.00 0.00 5.52
2096 2156 1.234821 TGTTCCACTCATTGTTCCGC 58.765 50.000 0.00 0.00 0.00 5.54
2097 2157 3.501828 TCATTGTTCCACTCATTGTTCCG 59.498 43.478 0.00 0.00 0.00 4.30
2098 2158 4.520492 ACTCATTGTTCCACTCATTGTTCC 59.480 41.667 0.00 0.00 0.00 3.62
2099 2159 5.455392 CACTCATTGTTCCACTCATTGTTC 58.545 41.667 0.00 0.00 0.00 3.18
2100 2160 4.279169 CCACTCATTGTTCCACTCATTGTT 59.721 41.667 0.00 0.00 0.00 2.83
2101 2161 3.822735 CCACTCATTGTTCCACTCATTGT 59.177 43.478 0.00 0.00 0.00 2.71
2102 2162 4.074259 TCCACTCATTGTTCCACTCATTG 58.926 43.478 0.00 0.00 0.00 2.82
2103 2163 4.371624 TCCACTCATTGTTCCACTCATT 57.628 40.909 0.00 0.00 0.00 2.57
2104 2164 4.371624 TTCCACTCATTGTTCCACTCAT 57.628 40.909 0.00 0.00 0.00 2.90
2105 2165 3.855255 TTCCACTCATTGTTCCACTCA 57.145 42.857 0.00 0.00 0.00 3.41
2106 2166 6.599244 TCATTATTCCACTCATTGTTCCACTC 59.401 38.462 0.00 0.00 0.00 3.51
2107 2167 6.484288 TCATTATTCCACTCATTGTTCCACT 58.516 36.000 0.00 0.00 0.00 4.00
2108 2168 6.678900 GCTCATTATTCCACTCATTGTTCCAC 60.679 42.308 0.00 0.00 0.00 4.02
2109 2169 5.357878 GCTCATTATTCCACTCATTGTTCCA 59.642 40.000 0.00 0.00 0.00 3.53
2110 2170 5.504665 CGCTCATTATTCCACTCATTGTTCC 60.505 44.000 0.00 0.00 0.00 3.62
2111 2171 5.504665 CCGCTCATTATTCCACTCATTGTTC 60.505 44.000 0.00 0.00 0.00 3.18
2112 2172 4.336433 CCGCTCATTATTCCACTCATTGTT 59.664 41.667 0.00 0.00 0.00 2.83
2113 2173 3.879295 CCGCTCATTATTCCACTCATTGT 59.121 43.478 0.00 0.00 0.00 2.71
2114 2174 4.129380 TCCGCTCATTATTCCACTCATTG 58.871 43.478 0.00 0.00 0.00 2.82
2115 2175 4.422073 TCCGCTCATTATTCCACTCATT 57.578 40.909 0.00 0.00 0.00 2.57
2116 2176 4.130118 GTTCCGCTCATTATTCCACTCAT 58.870 43.478 0.00 0.00 0.00 2.90
2117 2177 3.055458 TGTTCCGCTCATTATTCCACTCA 60.055 43.478 0.00 0.00 0.00 3.41
2118 2178 3.531538 TGTTCCGCTCATTATTCCACTC 58.468 45.455 0.00 0.00 0.00 3.51
2119 2179 3.627395 TGTTCCGCTCATTATTCCACT 57.373 42.857 0.00 0.00 0.00 4.00
2120 2180 3.485216 CGTTGTTCCGCTCATTATTCCAC 60.485 47.826 0.00 0.00 0.00 4.02
2121 2181 2.675844 CGTTGTTCCGCTCATTATTCCA 59.324 45.455 0.00 0.00 0.00 3.53
2122 2182 2.933906 TCGTTGTTCCGCTCATTATTCC 59.066 45.455 0.00 0.00 0.00 3.01
2126 2186 1.067142 AGCTCGTTGTTCCGCTCATTA 60.067 47.619 0.00 0.00 0.00 1.90
2950 3011 1.628340 CAACCATCCTGTAGGTCACCA 59.372 52.381 0.00 0.00 37.07 4.17
2951 3012 1.628846 ACAACCATCCTGTAGGTCACC 59.371 52.381 0.00 0.00 37.07 4.02
2952 3013 4.755266 ATACAACCATCCTGTAGGTCAC 57.245 45.455 0.00 0.00 37.07 3.67
2953 3014 5.772393 AAATACAACCATCCTGTAGGTCA 57.228 39.130 0.00 0.00 37.07 4.02
3034 3095 2.676748 TGCAGGAGTTCCCAACATTTT 58.323 42.857 0.00 0.00 37.41 1.82
3162 3223 7.218963 GTGTTCTTTAGCTCAACAACTCTTTTG 59.781 37.037 0.00 0.00 31.95 2.44
3800 3861 6.732154 ACTCGATTAAATCATTCTGCAATGG 58.268 36.000 0.00 0.00 40.08 3.16
3851 3912 7.318141 TCGTTCATAACTAGTAACTTTCCTGG 58.682 38.462 0.00 0.00 0.00 4.45
3859 3920 9.695884 GTGTAGTACTCGTTCATAACTAGTAAC 57.304 37.037 0.00 0.00 40.13 2.50
3908 3971 9.545105 TCGTTCATAACTAAGTTTTCCTGTAAA 57.455 29.630 0.00 0.00 0.00 2.01
3911 3974 7.215085 ACTCGTTCATAACTAAGTTTTCCTGT 58.785 34.615 0.00 0.00 0.00 4.00
3912 3975 7.653767 ACTCGTTCATAACTAAGTTTTCCTG 57.346 36.000 0.00 0.00 0.00 3.86
3913 3976 9.367444 CATACTCGTTCATAACTAAGTTTTCCT 57.633 33.333 0.00 0.00 0.00 3.36
3914 3977 9.362539 TCATACTCGTTCATAACTAAGTTTTCC 57.637 33.333 0.00 0.00 0.00 3.13
3920 3983 7.804129 GGCTACTCATACTCGTTCATAACTAAG 59.196 40.741 0.00 0.00 0.00 2.18
3921 3984 7.501559 AGGCTACTCATACTCGTTCATAACTAA 59.498 37.037 0.00 0.00 0.00 2.24
4072 4136 3.611766 CCGACTAAGGATGAAGTTGGT 57.388 47.619 1.25 0.00 40.90 3.67
4074 4138 4.188247 TGACCGACTAAGGATGAAGTTG 57.812 45.455 0.00 0.00 34.73 3.16
4076 4140 4.282496 AGATGACCGACTAAGGATGAAGT 58.718 43.478 0.00 0.00 34.73 3.01
4077 4141 4.261825 GGAGATGACCGACTAAGGATGAAG 60.262 50.000 0.00 0.00 34.73 3.02
4078 4142 3.637229 GGAGATGACCGACTAAGGATGAA 59.363 47.826 0.00 0.00 34.73 2.57
4080 4144 3.005261 CAGGAGATGACCGACTAAGGATG 59.995 52.174 0.00 0.00 34.73 3.51
4081 4145 3.226777 CAGGAGATGACCGACTAAGGAT 58.773 50.000 0.00 0.00 34.73 3.24
4085 4149 1.688311 CCCCAGGAGATGACCGACTAA 60.688 57.143 0.00 0.00 34.73 2.24
4093 6925 0.991920 GTGGTTTCCCCAGGAGATGA 59.008 55.000 0.00 0.00 46.45 2.92
4345 7185 2.357154 CCTGACCCCATCCAGTTAAAGG 60.357 54.545 0.00 0.00 0.00 3.11
4472 7313 7.903995 AACACATTTTGTTCATTTGTTCACT 57.096 28.000 0.00 0.00 46.05 3.41
4564 7412 7.279313 AGTTTCGCTAGTCAACAGAAAGTAAAA 59.721 33.333 0.00 0.00 34.06 1.52
4606 7454 6.368516 GCCAGCTTTAGATGCATTTTACAAAA 59.631 34.615 0.00 0.00 0.00 2.44
4809 7660 1.531423 AGCAGCACAGATTGTTCAGG 58.469 50.000 0.00 0.00 0.00 3.86
4857 7708 6.404293 GCATAAATCACACCATTAAGTTCCGT 60.404 38.462 0.00 0.00 0.00 4.69
4975 7826 7.402862 ACTTACTTTTGCTGGGTTGATAGTAT 58.597 34.615 0.00 0.00 0.00 2.12
5076 7927 0.895530 TGCTCGAAAAGGAGGTCGAT 59.104 50.000 0.00 0.00 44.63 3.59
5083 7934 3.469008 TTCTCTGTTGCTCGAAAAGGA 57.531 42.857 0.00 0.00 0.00 3.36
5105 7956 7.883833 ACATACTGCTTCGATATAAGGAGAGTA 59.116 37.037 12.26 7.04 45.00 2.59
5233 8085 6.494842 TCGTAGCATTAGCAAAATGGAAATC 58.505 36.000 12.19 0.00 45.49 2.17
5441 8293 7.230510 ACATGAAGAGCTATACCAGAGACTTAG 59.769 40.741 0.00 0.00 0.00 2.18
5463 8315 4.001652 GCTGATCCCTGTGATATGACATG 58.998 47.826 0.00 0.00 32.41 3.21
5464 8316 3.649502 TGCTGATCCCTGTGATATGACAT 59.350 43.478 0.00 0.00 32.41 3.06
5467 8319 3.905591 TCATGCTGATCCCTGTGATATGA 59.094 43.478 0.00 0.00 32.41 2.15
5468 8320 4.281898 TCATGCTGATCCCTGTGATATG 57.718 45.455 0.00 0.00 32.41 1.78
5470 8322 4.987963 ATTCATGCTGATCCCTGTGATA 57.012 40.909 0.00 0.00 32.41 2.15
5476 8335 4.336433 CGTACAAAATTCATGCTGATCCCT 59.664 41.667 0.00 0.00 0.00 4.20
5486 8345 3.064820 GGCCGACATCGTACAAAATTCAT 59.935 43.478 0.00 0.00 37.74 2.57
5488 8347 2.417239 TGGCCGACATCGTACAAAATTC 59.583 45.455 0.00 0.00 37.74 2.17
5513 8372 9.178758 AGAGTCAGTAAAACAAAAGTTCAGATT 57.821 29.630 0.00 0.00 0.00 2.40
5515 8374 7.010183 CGAGAGTCAGTAAAACAAAAGTTCAGA 59.990 37.037 0.00 0.00 0.00 3.27
5516 8375 7.119997 CGAGAGTCAGTAAAACAAAAGTTCAG 58.880 38.462 0.00 0.00 0.00 3.02
5517 8376 6.592607 ACGAGAGTCAGTAAAACAAAAGTTCA 59.407 34.615 0.00 0.00 44.19 3.18
5518 8377 7.001695 ACGAGAGTCAGTAAAACAAAAGTTC 57.998 36.000 0.00 0.00 44.19 3.01
5540 8400 6.655062 TCTATGCTTGTTTTCAGTTGTAACG 58.345 36.000 0.00 0.00 0.00 3.18
5582 8442 6.912203 TCTGAAAGAAAACACGACATTGTA 57.088 33.333 0.00 0.00 42.31 2.41
5583 8443 5.811399 TCTGAAAGAAAACACGACATTGT 57.189 34.783 0.00 0.00 42.31 2.71
5660 8521 0.727398 GGCATTCTTGGCTCGTACAC 59.273 55.000 0.00 0.00 44.68 2.90
5740 8601 1.831106 AGTGTGAATATCGAGCCACCA 59.169 47.619 0.00 0.00 0.00 4.17
5758 8619 1.699930 ACCTTTGACCCCACCCAGT 60.700 57.895 0.00 0.00 0.00 4.00
5832 8693 4.060205 GCAGAAAATTGCTTGGACATTGT 58.940 39.130 0.00 0.00 40.89 2.71
5833 8694 3.434299 GGCAGAAAATTGCTTGGACATTG 59.566 43.478 0.00 0.00 43.57 2.82
5834 8695 3.667360 GGCAGAAAATTGCTTGGACATT 58.333 40.909 0.00 0.00 43.57 2.71
5835 8696 2.353011 CGGCAGAAAATTGCTTGGACAT 60.353 45.455 0.00 0.00 43.57 3.06
5836 8697 1.000385 CGGCAGAAAATTGCTTGGACA 60.000 47.619 0.00 0.00 43.57 4.02
5837 8698 1.269448 TCGGCAGAAAATTGCTTGGAC 59.731 47.619 0.00 0.00 43.57 4.02
5838 8699 1.541147 CTCGGCAGAAAATTGCTTGGA 59.459 47.619 0.00 0.00 43.57 3.53
5839 8700 1.986698 CTCGGCAGAAAATTGCTTGG 58.013 50.000 0.00 0.00 43.57 3.61
5840 8701 1.336148 TGCTCGGCAGAAAATTGCTTG 60.336 47.619 0.00 0.00 43.57 4.01
5841 8702 0.961019 TGCTCGGCAGAAAATTGCTT 59.039 45.000 0.00 0.00 43.57 3.91
5842 8703 0.242017 GTGCTCGGCAGAAAATTGCT 59.758 50.000 0.00 0.00 43.57 3.91
5871 8732 7.067008 GCAGTAATGTAGGTTGGATGTTATGTT 59.933 37.037 0.00 0.00 0.00 2.71
5872 8733 6.542370 GCAGTAATGTAGGTTGGATGTTATGT 59.458 38.462 0.00 0.00 0.00 2.29
5873 8734 6.017109 GGCAGTAATGTAGGTTGGATGTTATG 60.017 42.308 0.00 0.00 0.00 1.90
5874 8735 6.062095 GGCAGTAATGTAGGTTGGATGTTAT 58.938 40.000 0.00 0.00 0.00 1.89
5905 8771 2.568623 AACGGCTGAAACTGAAGGAT 57.431 45.000 0.00 0.00 0.00 3.24
5906 8772 2.341846 AAACGGCTGAAACTGAAGGA 57.658 45.000 0.00 0.00 0.00 3.36
5907 8773 4.215399 TGATAAAACGGCTGAAACTGAAGG 59.785 41.667 0.00 0.00 0.00 3.46
5908 8774 5.049405 AGTGATAAAACGGCTGAAACTGAAG 60.049 40.000 0.00 0.00 0.00 3.02
5909 8775 4.819630 AGTGATAAAACGGCTGAAACTGAA 59.180 37.500 0.00 0.00 0.00 3.02
5938 8804 3.579709 AGTACACATCAAACAGCGAGAG 58.420 45.455 0.00 0.00 0.00 3.20
5958 8824 9.632807 CGATCTTATATTTCTTTACAGAGGGAG 57.367 37.037 0.00 0.00 0.00 4.30
5960 8826 9.765795 AACGATCTTATATTTCTTTACAGAGGG 57.234 33.333 0.00 0.00 0.00 4.30
5981 8847 6.208988 TCAGCAAGTAGTGATCTAAACGAT 57.791 37.500 0.00 0.00 34.25 3.73
5982 8848 5.638596 TCAGCAAGTAGTGATCTAAACGA 57.361 39.130 0.00 0.00 0.00 3.85
5983 8849 6.503616 GATCAGCAAGTAGTGATCTAAACG 57.496 41.667 5.29 0.00 43.88 3.60
5989 8855 5.051374 GCGTTTAGATCAGCAAGTAGTGATC 60.051 44.000 4.48 4.48 46.45 2.92
5990 8856 4.806247 GCGTTTAGATCAGCAAGTAGTGAT 59.194 41.667 0.00 0.00 36.07 3.06
5991 8857 4.082190 AGCGTTTAGATCAGCAAGTAGTGA 60.082 41.667 0.00 0.00 0.00 3.41
5992 8858 4.177026 AGCGTTTAGATCAGCAAGTAGTG 58.823 43.478 0.00 0.00 0.00 2.74
5993 8859 4.158764 AGAGCGTTTAGATCAGCAAGTAGT 59.841 41.667 0.00 0.00 37.82 2.73
5994 8860 4.677584 AGAGCGTTTAGATCAGCAAGTAG 58.322 43.478 0.00 0.00 37.82 2.57
5995 8861 4.720649 AGAGCGTTTAGATCAGCAAGTA 57.279 40.909 0.00 0.00 37.82 2.24
5996 8862 3.601443 AGAGCGTTTAGATCAGCAAGT 57.399 42.857 0.00 0.00 37.82 3.16
5997 8863 7.881643 ATATAAGAGCGTTTAGATCAGCAAG 57.118 36.000 0.00 0.00 37.82 4.01
5998 8864 8.662781 AAATATAAGAGCGTTTAGATCAGCAA 57.337 30.769 0.00 0.00 37.82 3.91
5999 8865 8.144478 AGAAATATAAGAGCGTTTAGATCAGCA 58.856 33.333 0.00 0.00 37.82 4.41
6000 8866 8.527567 AGAAATATAAGAGCGTTTAGATCAGC 57.472 34.615 0.00 0.00 37.82 4.26
6003 8869 9.587461 GCAAAGAAATATAAGAGCGTTTAGATC 57.413 33.333 0.00 0.00 35.01 2.75
6004 8870 9.109393 TGCAAAGAAATATAAGAGCGTTTAGAT 57.891 29.630 0.00 0.00 0.00 1.98
6005 8871 8.487313 TGCAAAGAAATATAAGAGCGTTTAGA 57.513 30.769 0.00 0.00 0.00 2.10
6019 8885 8.013004 GAGAACTACTCCCCTTGCAAAGAAATA 61.013 40.741 0.00 0.00 42.26 1.40
6020 8886 7.248681 GAGAACTACTCCCCTTGCAAAGAAAT 61.249 42.308 0.00 0.00 42.26 2.17
6021 8887 5.977209 GAGAACTACTCCCCTTGCAAAGAAA 60.977 44.000 0.00 0.00 42.26 2.52
6022 8888 4.505039 GAGAACTACTCCCCTTGCAAAGAA 60.505 45.833 0.00 0.00 42.26 2.52
6023 8889 3.008049 GAGAACTACTCCCCTTGCAAAGA 59.992 47.826 0.00 0.00 42.26 2.52
6024 8890 3.244561 TGAGAACTACTCCCCTTGCAAAG 60.245 47.826 0.00 0.00 44.34 2.77
6025 8891 2.708861 TGAGAACTACTCCCCTTGCAAA 59.291 45.455 0.00 0.00 44.34 3.68
6026 8892 2.303022 CTGAGAACTACTCCCCTTGCAA 59.697 50.000 0.00 0.00 44.34 4.08
6027 8893 1.902508 CTGAGAACTACTCCCCTTGCA 59.097 52.381 0.00 0.00 44.34 4.08
6028 8894 2.180276 TCTGAGAACTACTCCCCTTGC 58.820 52.381 0.00 0.00 44.34 4.01
6029 8895 4.891992 TTTCTGAGAACTACTCCCCTTG 57.108 45.455 0.00 0.00 44.34 3.61
6030 8896 5.906772 TTTTTCTGAGAACTACTCCCCTT 57.093 39.130 0.00 0.00 44.34 3.95
6031 8897 6.241645 CAATTTTTCTGAGAACTACTCCCCT 58.758 40.000 0.00 0.00 44.34 4.79
6032 8898 5.106118 GCAATTTTTCTGAGAACTACTCCCC 60.106 44.000 0.00 0.00 44.34 4.81
6033 8899 5.390991 CGCAATTTTTCTGAGAACTACTCCC 60.391 44.000 0.00 0.00 44.34 4.30
6034 8900 5.179555 ACGCAATTTTTCTGAGAACTACTCC 59.820 40.000 0.00 0.00 44.34 3.85
6035 8901 6.229561 ACGCAATTTTTCTGAGAACTACTC 57.770 37.500 0.00 0.00 45.11 2.59
6036 8902 6.260050 TCAACGCAATTTTTCTGAGAACTACT 59.740 34.615 0.00 0.00 0.00 2.57
6037 8903 6.427150 TCAACGCAATTTTTCTGAGAACTAC 58.573 36.000 0.00 0.00 0.00 2.73
6038 8904 6.612247 TCAACGCAATTTTTCTGAGAACTA 57.388 33.333 0.00 0.00 0.00 2.24
6039 8905 5.499139 TCAACGCAATTTTTCTGAGAACT 57.501 34.783 0.00 0.00 0.00 3.01
6040 8906 5.914635 TGATCAACGCAATTTTTCTGAGAAC 59.085 36.000 0.00 0.00 0.00 3.01
6058 8924 7.605691 ACACAAAAGGTTTCAACAATTGATCAA 59.394 29.630 13.59 11.26 39.84 2.57
6066 8932 5.215252 TCCAACACAAAAGGTTTCAACAA 57.785 34.783 0.00 0.00 0.00 2.83
6078 8944 3.573538 CCTGACAATCCATCCAACACAAA 59.426 43.478 0.00 0.00 0.00 2.83
6253 9130 8.687116 TTTGATGACAAGTATTTCGGGACGGA 62.687 42.308 0.00 0.00 44.62 4.69
6254 9131 6.592789 TTTGATGACAAGTATTTCGGGACGG 61.593 44.000 0.00 0.00 44.62 4.79
6255 9132 4.390603 TTTGATGACAAGTATTTCGGGACG 59.609 41.667 0.00 0.00 45.38 4.79
6256 9133 5.873179 TTTGATGACAAGTATTTCGGGAC 57.127 39.130 0.00 0.00 37.32 4.46
6257 9134 6.127758 CCATTTTGATGACAAGTATTTCGGGA 60.128 38.462 0.00 0.00 37.32 5.14
6258 9135 6.035843 CCATTTTGATGACAAGTATTTCGGG 58.964 40.000 0.00 0.00 37.32 5.14
6259 9136 6.747280 GTCCATTTTGATGACAAGTATTTCGG 59.253 38.462 0.00 0.00 37.32 4.30
6260 9137 7.304735 TGTCCATTTTGATGACAAGTATTTCG 58.695 34.615 0.00 0.00 37.32 3.46
6261 9138 9.474920 TTTGTCCATTTTGATGACAAGTATTTC 57.525 29.630 0.00 0.00 37.13 2.17
6262 9139 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
6263 9140 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
6312 9189 9.607333 TGGATAAAAGGAGATGTATCTAGACAT 57.393 33.333 0.00 0.00 42.82 3.06
6313 9190 9.607333 ATGGATAAAAGGAGATGTATCTAGACA 57.393 33.333 0.00 0.00 37.25 3.41
6321 9198 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
6322 9199 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
6323 9200 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
6324 9201 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
6325 9202 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
6326 9203 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
6327 9204 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
6333 9210 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
6334 9211 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
6335 9212 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
6336 9213 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
6337 9214 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
6338 9215 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
6339 9216 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
6340 9217 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
6341 9218 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
6342 9219 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
6343 9220 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
6344 9221 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
6345 9222 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
6346 9223 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6347 9224 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6348 9225 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6349 9226 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6350 9227 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6351 9228 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
6352 9229 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
6353 9230 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
6354 9231 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
6355 9232 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
6356 9233 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
6357 9234 0.890090 GAGATACTCCCTCCGTCCGG 60.890 65.000 0.00 0.00 0.00 5.14
6358 9235 0.108963 AGAGATACTCCCTCCGTCCG 59.891 60.000 0.00 0.00 0.00 4.79
6359 9236 1.422402 AGAGAGATACTCCCTCCGTCC 59.578 57.143 0.00 0.00 45.96 4.79
6360 9237 2.943036 AGAGAGATACTCCCTCCGTC 57.057 55.000 0.00 0.00 45.96 4.79
6361 9238 3.497227 GCTTAGAGAGATACTCCCTCCGT 60.497 52.174 0.00 0.00 45.96 4.69
6362 9239 3.078837 GCTTAGAGAGATACTCCCTCCG 58.921 54.545 0.00 0.00 45.96 4.63
6363 9240 4.079253 CAGCTTAGAGAGATACTCCCTCC 58.921 52.174 0.00 0.00 45.96 4.30
6364 9241 3.506067 GCAGCTTAGAGAGATACTCCCTC 59.494 52.174 0.00 0.00 45.96 4.30
6365 9242 3.140144 AGCAGCTTAGAGAGATACTCCCT 59.860 47.826 0.00 0.00 45.96 4.20
6366 9243 3.255642 CAGCAGCTTAGAGAGATACTCCC 59.744 52.174 0.00 0.00 45.96 4.30
6367 9244 3.305335 GCAGCAGCTTAGAGAGATACTCC 60.305 52.174 0.00 0.00 41.09 3.85
6368 9245 3.900941 GCAGCAGCTTAGAGAGATACTC 58.099 50.000 0.00 0.00 40.78 2.59
6386 9263 1.710103 CTCATCAGCAGCAGCAGCAG 61.710 60.000 12.92 3.97 45.49 4.24
6387 9264 1.745489 CTCATCAGCAGCAGCAGCA 60.745 57.895 12.92 0.00 45.49 4.41
6486 9363 0.734942 TCGATGACGGTTTTCTCGGC 60.735 55.000 0.00 0.00 40.21 5.54
6501 9378 3.594603 ACGAGAAATTGGACAGTCGAT 57.405 42.857 0.00 0.00 0.00 3.59
6502 9379 3.380479 AACGAGAAATTGGACAGTCGA 57.620 42.857 0.00 0.00 0.00 4.20
6550 9428 5.630680 AGTTTCAAATTAGATGTTTGCTGCG 59.369 36.000 0.00 0.00 36.69 5.18
6564 9442 6.272318 TCGCAATTCAGTTCAGTTTCAAATT 58.728 32.000 0.00 0.00 0.00 1.82
6583 9461 2.011222 AGTTCGTGTCCTTTTTCGCAA 58.989 42.857 0.00 0.00 0.00 4.85
6592 9470 3.548770 TCGTCCATATAGTTCGTGTCCT 58.451 45.455 0.00 0.00 0.00 3.85
6628 9506 5.277490 CGAAAAATGATCATGAGCATACGGT 60.277 40.000 25.67 12.10 36.27 4.83
6638 9516 4.007282 ACGACAGCGAAAAATGATCATG 57.993 40.909 9.46 0.00 41.64 3.07
6645 9531 1.336755 AGGCAAACGACAGCGAAAAAT 59.663 42.857 0.00 0.00 41.64 1.82
6721 9607 0.107165 GCCGGGCCTGAATCTAAACT 60.107 55.000 15.09 0.00 0.00 2.66
6875 9763 1.453015 AACCACTTTCTGCACGCCA 60.453 52.632 0.00 0.00 0.00 5.69
6876 9764 1.008538 CAACCACTTTCTGCACGCC 60.009 57.895 0.00 0.00 0.00 5.68
6877 9765 0.100503 AACAACCACTTTCTGCACGC 59.899 50.000 0.00 0.00 0.00 5.34
6878 9766 1.400142 TCAACAACCACTTTCTGCACG 59.600 47.619 0.00 0.00 0.00 5.34
6889 9788 6.571731 CGTCCTCTTTACTATCTCAACAACCA 60.572 42.308 0.00 0.00 0.00 3.67
6921 9820 2.498885 GGGGACGTGTAAAGGTCAGTAT 59.501 50.000 7.98 0.00 34.87 2.12
6950 9849 1.322538 GGTGGGTTGGGATGTGATGC 61.323 60.000 0.00 0.00 0.00 3.91
6955 9854 1.302949 CATCGGTGGGTTGGGATGT 59.697 57.895 0.00 0.00 33.36 3.06
6958 9857 4.041762 GCCATCGGTGGGTTGGGA 62.042 66.667 18.38 0.00 46.14 4.37
6962 9861 4.404098 GACGGCCATCGGTGGGTT 62.404 66.667 18.38 0.00 46.14 4.11
7142 10041 0.035439 GAGATGAAAAGGCACGGGGA 60.035 55.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.