Multiple sequence alignment - TraesCS5D01G155400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G155400 chr5D 100.000 4067 0 0 1 4067 243835668 243831602 0.000000e+00 7511
1 TraesCS5D01G155400 chr5B 97.389 2911 72 2 896 3802 276960874 276957964 0.000000e+00 4951
2 TraesCS5D01G155400 chr5B 98.810 168 2 0 3900 4067 276957016 276956849 2.380000e-77 300
3 TraesCS5D01G155400 chr5B 96.522 115 4 0 3801 3915 276957278 276957164 1.490000e-44 191
4 TraesCS5D01G155400 chr5A 97.437 2185 56 0 910 3094 328009685 328007501 0.000000e+00 3725
5 TraesCS5D01G155400 chr5A 85.697 825 98 15 1 811 197493576 197492758 0.000000e+00 852
6 TraesCS5D01G155400 chr5A 85.434 714 50 26 3129 3802 328007501 328006802 0.000000e+00 693
7 TraesCS5D01G155400 chr5A 92.273 220 12 3 3850 4066 328006386 328006169 1.420000e-79 307
8 TraesCS5D01G155400 chr2A 88.582 832 84 6 46 868 456230735 456229906 0.000000e+00 1000
9 TraesCS5D01G155400 chr2A 80.435 138 21 5 730 864 279834878 279835012 2.590000e-17 100
10 TraesCS5D01G155400 chrUn 86.599 888 103 13 1 878 115253156 115252275 0.000000e+00 966
11 TraesCS5D01G155400 chr4A 86.219 878 108 11 1 868 209285752 209286626 0.000000e+00 939
12 TraesCS5D01G155400 chr4A 86.797 818 90 14 1 804 243762600 243763413 0.000000e+00 896
13 TraesCS5D01G155400 chr4A 87.931 696 79 5 1 694 202208620 202209312 0.000000e+00 815
14 TraesCS5D01G155400 chr7A 85.714 889 102 10 1 878 421369302 421370176 0.000000e+00 915
15 TraesCS5D01G155400 chr7D 85.395 849 107 14 1 837 419182318 419181475 0.000000e+00 865
16 TraesCS5D01G155400 chr3D 84.364 889 122 14 1 876 277730461 277729577 0.000000e+00 856
17 TraesCS5D01G155400 chr1D 84.134 895 119 14 1 878 177982794 177981906 0.000000e+00 845
18 TraesCS5D01G155400 chr6D 81.808 885 147 13 1 878 117553339 117552462 0.000000e+00 730
19 TraesCS5D01G155400 chr6D 78.761 904 151 32 1 878 163405340 163404452 5.900000e-158 568
20 TraesCS5D01G155400 chr2D 78.650 904 142 37 1 878 283596331 283597209 1.650000e-153 553
21 TraesCS5D01G155400 chr6A 74.944 447 94 12 436 868 293991171 293990729 5.370000e-44 189
22 TraesCS5D01G155400 chr7B 75.451 277 52 13 604 867 490919695 490919422 1.990000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G155400 chr5D 243831602 243835668 4066 True 7511 7511 100.000000 1 4067 1 chr5D.!!$R1 4066
1 TraesCS5D01G155400 chr5B 276956849 276960874 4025 True 1814 4951 97.573667 896 4067 3 chr5B.!!$R1 3171
2 TraesCS5D01G155400 chr5A 328006169 328009685 3516 True 1575 3725 91.714667 910 4066 3 chr5A.!!$R2 3156
3 TraesCS5D01G155400 chr5A 197492758 197493576 818 True 852 852 85.697000 1 811 1 chr5A.!!$R1 810
4 TraesCS5D01G155400 chr2A 456229906 456230735 829 True 1000 1000 88.582000 46 868 1 chr2A.!!$R1 822
5 TraesCS5D01G155400 chrUn 115252275 115253156 881 True 966 966 86.599000 1 878 1 chrUn.!!$R1 877
6 TraesCS5D01G155400 chr4A 209285752 209286626 874 False 939 939 86.219000 1 868 1 chr4A.!!$F2 867
7 TraesCS5D01G155400 chr4A 243762600 243763413 813 False 896 896 86.797000 1 804 1 chr4A.!!$F3 803
8 TraesCS5D01G155400 chr4A 202208620 202209312 692 False 815 815 87.931000 1 694 1 chr4A.!!$F1 693
9 TraesCS5D01G155400 chr7A 421369302 421370176 874 False 915 915 85.714000 1 878 1 chr7A.!!$F1 877
10 TraesCS5D01G155400 chr7D 419181475 419182318 843 True 865 865 85.395000 1 837 1 chr7D.!!$R1 836
11 TraesCS5D01G155400 chr3D 277729577 277730461 884 True 856 856 84.364000 1 876 1 chr3D.!!$R1 875
12 TraesCS5D01G155400 chr1D 177981906 177982794 888 True 845 845 84.134000 1 878 1 chr1D.!!$R1 877
13 TraesCS5D01G155400 chr6D 117552462 117553339 877 True 730 730 81.808000 1 878 1 chr6D.!!$R1 877
14 TraesCS5D01G155400 chr6D 163404452 163405340 888 True 568 568 78.761000 1 878 1 chr6D.!!$R2 877
15 TraesCS5D01G155400 chr2D 283596331 283597209 878 False 553 553 78.650000 1 878 1 chr2D.!!$F1 877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 946 0.381089 GCCGCTCTGTCAGTATACGT 59.619 55.0 0.00 0.00 0.00 3.57 F
1774 1815 0.038251 TGCTTCACGTGGACAGCTAG 60.038 55.0 25.58 5.69 33.53 3.42 F
2168 2209 0.034337 TACTCAAACTGTGGGCGGAC 59.966 55.0 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 1951 0.366871 CGTCGAAGAATCAGGCAACG 59.633 55.000 0.0 0.0 39.69 4.10 R
2895 2936 1.209019 TCCATCTGCTTCAGCCTCTTC 59.791 52.381 0.0 0.0 41.18 2.87 R
3898 5005 0.237498 CGTGAGCGGTTTCCCTTTTC 59.763 55.000 0.0 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 161 4.015918 ACCCTACTCCTACTTTGGTGGATA 60.016 45.833 0.00 0.00 0.00 2.59
171 178 4.721274 TGGTGGATAGATGATGGAAAGTGA 59.279 41.667 0.00 0.00 0.00 3.41
269 285 3.087031 TCCGAATCCTCTCTACGTTTGT 58.913 45.455 0.00 0.00 0.00 2.83
304 320 6.998673 CCTTTTATAGATTAAGGGGTCACCAG 59.001 42.308 0.00 0.00 43.89 4.00
319 335 4.098914 TCACCAGAGTGGCAAAATTAGT 57.901 40.909 0.00 0.00 42.67 2.24
320 336 4.072131 TCACCAGAGTGGCAAAATTAGTC 58.928 43.478 0.00 0.00 42.67 2.59
321 337 4.074970 CACCAGAGTGGCAAAATTAGTCT 58.925 43.478 0.00 0.00 42.67 3.24
372 392 6.551601 AGTGCTATTATACCTAACTCTGCAGT 59.448 38.462 14.67 0.00 0.00 4.40
583 605 0.392998 ACCGCACTGATTGATGACCC 60.393 55.000 0.00 0.00 0.00 4.46
698 725 1.758514 CCCTCGCCAGGCTCTTCTA 60.759 63.158 10.54 0.00 38.72 2.10
706 741 2.035632 CCAGGCTCTTCTATCGAGGTT 58.964 52.381 0.00 0.00 0.00 3.50
795 835 5.065859 TCGAAAAACTGATCTTTTGTGCTCA 59.934 36.000 0.00 0.00 0.00 4.26
804 844 6.178324 TGATCTTTTGTGCTCAGATCTGATT 58.822 36.000 25.30 1.59 39.13 2.57
819 860 7.177216 TCAGATCTGATTTTGGTGCTTGTAATT 59.823 33.333 21.67 0.00 34.14 1.40
824 865 5.819379 TGATTTTGGTGCTTGTAATTTTGCA 59.181 32.000 0.00 0.00 0.00 4.08
847 888 3.474942 TGCTTGTGCACAGTCTGAA 57.525 47.368 20.59 2.75 45.31 3.02
883 924 2.395651 TTTTTCACCGACACCGTGG 58.604 52.632 3.03 0.00 0.00 4.94
884 925 1.716826 TTTTTCACCGACACCGTGGC 61.717 55.000 3.03 0.00 0.00 5.01
885 926 2.871216 TTTTCACCGACACCGTGGCA 62.871 55.000 4.95 0.00 0.00 4.92
886 927 3.800685 TTCACCGACACCGTGGCAG 62.801 63.158 4.95 0.00 0.00 4.85
899 940 4.385405 GGCAGCCGCTCTGTCAGT 62.385 66.667 0.00 0.00 46.44 3.41
900 941 2.573869 GCAGCCGCTCTGTCAGTA 59.426 61.111 0.00 0.00 44.66 2.74
901 942 1.142748 GCAGCCGCTCTGTCAGTAT 59.857 57.895 0.00 0.00 44.66 2.12
902 943 0.385751 GCAGCCGCTCTGTCAGTATA 59.614 55.000 0.00 0.00 44.66 1.47
903 944 1.866063 GCAGCCGCTCTGTCAGTATAC 60.866 57.143 0.00 0.00 44.66 1.47
904 945 0.663688 AGCCGCTCTGTCAGTATACG 59.336 55.000 0.00 0.28 0.00 3.06
905 946 0.381089 GCCGCTCTGTCAGTATACGT 59.619 55.000 0.00 0.00 0.00 3.57
906 947 1.860399 GCCGCTCTGTCAGTATACGTG 60.860 57.143 0.00 0.00 0.00 4.49
907 948 1.400846 CCGCTCTGTCAGTATACGTGT 59.599 52.381 0.00 0.00 0.00 4.49
908 949 2.159421 CCGCTCTGTCAGTATACGTGTT 60.159 50.000 0.00 0.00 0.00 3.32
940 981 1.961277 CACCCGTGAGTCCAACAGC 60.961 63.158 0.00 0.00 0.00 4.40
1107 1148 2.933287 AAGTCCGGCCATGTCCCA 60.933 61.111 2.24 0.00 0.00 4.37
1368 1409 1.379843 GGATTTGGACACCGCCCAT 60.380 57.895 0.00 0.00 33.04 4.00
1440 1481 1.491668 TGCATAGGTATGTCCGGTGT 58.508 50.000 0.00 0.00 41.99 4.16
1491 1532 1.556911 AGAGAGATTGGTTCGGCATGT 59.443 47.619 0.00 0.00 0.00 3.21
1573 1614 0.955428 TTGTGCTGACCGGATGAAGC 60.955 55.000 9.46 11.94 36.18 3.86
1574 1615 2.125552 TGCTGACCGGATGAAGCG 60.126 61.111 9.46 0.00 38.53 4.68
1587 1628 1.305219 TGAAGCGCGATTTTGGGAGG 61.305 55.000 12.37 0.00 0.00 4.30
1632 1673 3.760151 CTGCCAAGATTGAACTGGATTCA 59.240 43.478 0.00 0.00 45.92 2.57
1701 1742 1.803519 CTCTGCTCGGCGTGTCTTC 60.804 63.158 6.85 0.00 0.00 2.87
1743 1784 2.694213 GAGTTCTCTGTTTCTGCCCTC 58.306 52.381 0.00 0.00 0.00 4.30
1774 1815 0.038251 TGCTTCACGTGGACAGCTAG 60.038 55.000 25.58 5.69 33.53 3.42
1776 1817 1.134965 GCTTCACGTGGACAGCTAGAT 60.135 52.381 17.00 0.00 31.28 1.98
1854 1895 1.132453 CTCATCAGTGGCTGTGCATTG 59.868 52.381 0.00 0.00 32.61 2.82
1910 1951 0.250209 AGGATGATGCGGTCAGATGC 60.250 55.000 0.00 0.00 40.92 3.91
1926 1967 0.729116 ATGCGTTGCCTGATTCTTCG 59.271 50.000 0.00 0.00 0.00 3.79
1947 1988 0.370273 CGTATGCCAGCGTTCTGAAC 59.630 55.000 10.48 10.48 42.95 3.18
1989 2030 0.035725 TCAAGTCTGGGCAGCAGATG 60.036 55.000 0.00 0.00 0.00 2.90
2073 2114 5.165961 ACTTCTACTCAAAATGCAGCCTA 57.834 39.130 0.00 0.00 0.00 3.93
2118 2159 4.569943 TCAGTGAGCTTAGGTTTCATGAC 58.430 43.478 0.00 0.00 0.00 3.06
2168 2209 0.034337 TACTCAAACTGTGGGCGGAC 59.966 55.000 0.00 0.00 0.00 4.79
2226 2267 5.938279 AGCAAGAGTGTCATATCATGGAAT 58.062 37.500 0.00 0.00 0.00 3.01
2435 2476 2.027745 AGTCTGACCATGTTGTAGCCTG 60.028 50.000 3.76 0.00 0.00 4.85
2721 2762 3.118482 TGCAGGAGGATTTCTGTCTGATC 60.118 47.826 0.00 0.00 33.81 2.92
2790 2831 1.537135 GGTCGGCTAGATGAAGCAGTC 60.537 57.143 0.00 0.00 44.64 3.51
2799 2840 4.991153 AGATGAAGCAGTCGAGTTCATA 57.009 40.909 6.01 0.00 40.27 2.15
2847 2888 5.598769 ACAGTAAGTTGGACTACAGTTGTC 58.401 41.667 6.60 6.60 0.00 3.18
2895 2936 2.545532 GGCTCTGATCCAGAAGATGTCG 60.546 54.545 0.00 0.00 40.18 4.35
2901 2942 3.382865 TGATCCAGAAGATGTCGAAGAGG 59.617 47.826 0.00 0.00 32.89 3.69
2937 2978 2.009774 GAATCAGGGTCACCACATTCG 58.990 52.381 0.00 0.00 40.13 3.34
3447 3490 1.819288 TCTGCTGTCAGTACTACAGGC 59.181 52.381 22.75 17.80 43.71 4.85
3500 3545 5.170748 GTTGGAATGACTATTTTGGGCAAG 58.829 41.667 0.00 0.00 0.00 4.01
3840 4784 5.348259 TGGATGGAGGAGTGGTACATATA 57.652 43.478 0.00 0.00 44.52 0.86
3898 5005 6.973474 TGTTTGTTTTCCTTATAACAACCACG 59.027 34.615 0.00 0.00 42.19 4.94
3905 5012 5.005094 TCCTTATAACAACCACGAAAAGGG 58.995 41.667 0.00 0.00 34.36 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 161 4.102838 CCTCTCCATCACTTTCCATCATCT 59.897 45.833 0.00 0.00 0.00 2.90
269 285 5.930209 AATCTATAAAAGGAGGCCCATGA 57.070 39.130 0.00 0.00 33.88 3.07
304 320 9.556030 GTATGTAAAAGACTAATTTTGCCACTC 57.444 33.333 0.00 0.00 34.88 3.51
355 375 5.506708 TGTCAGACTGCAGAGTTAGGTATA 58.493 41.667 23.35 0.00 30.16 1.47
463 483 0.315251 TCCTGAGACGTGTCAAGCAG 59.685 55.000 16.86 4.84 0.00 4.24
706 741 8.918202 AGAGACTGTATACAACCAATGAAAAA 57.082 30.769 7.06 0.00 0.00 1.94
712 749 5.721960 ACCAGAGAGACTGTATACAACCAAT 59.278 40.000 7.06 0.00 44.40 3.16
723 761 5.871396 TCAAAACTAACCAGAGAGACTGT 57.129 39.130 0.00 0.00 44.40 3.55
741 779 3.570975 ACATGCAGCACAAGAAGATCAAA 59.429 39.130 0.00 0.00 0.00 2.69
795 835 7.472334 AATTACAAGCACCAAAATCAGATCT 57.528 32.000 0.00 0.00 0.00 2.75
804 844 6.094603 ACAAATGCAAAATTACAAGCACCAAA 59.905 30.769 0.00 0.00 40.14 3.28
846 887 1.855295 AAAAACCTGGGTCCGTTGTT 58.145 45.000 0.00 0.00 0.00 2.83
847 888 3.600187 AAAAACCTGGGTCCGTTGT 57.400 47.368 0.00 0.00 0.00 3.32
869 910 4.293648 CTGCCACGGTGTCGGTGA 62.294 66.667 7.45 0.00 41.39 4.02
885 926 0.663688 CGTATACTGACAGAGCGGCT 59.336 55.000 10.08 0.00 0.00 5.52
886 927 0.381089 ACGTATACTGACAGAGCGGC 59.619 55.000 10.08 0.00 0.00 6.53
887 928 1.400846 ACACGTATACTGACAGAGCGG 59.599 52.381 10.08 5.03 0.00 5.52
888 929 2.826979 ACACGTATACTGACAGAGCG 57.173 50.000 10.08 9.81 0.00 5.03
889 930 4.092771 TCAACACGTATACTGACAGAGC 57.907 45.455 10.08 0.00 0.00 4.09
890 931 6.586463 ACAAATCAACACGTATACTGACAGAG 59.414 38.462 10.08 0.00 0.00 3.35
891 932 6.452242 ACAAATCAACACGTATACTGACAGA 58.548 36.000 10.08 0.00 0.00 3.41
892 933 6.706055 ACAAATCAACACGTATACTGACAG 57.294 37.500 0.00 0.00 0.00 3.51
893 934 7.146648 TGTACAAATCAACACGTATACTGACA 58.853 34.615 0.56 0.00 0.00 3.58
894 935 7.571089 TGTACAAATCAACACGTATACTGAC 57.429 36.000 0.56 0.00 0.00 3.51
895 936 6.309494 GCTGTACAAATCAACACGTATACTGA 59.691 38.462 0.00 0.00 0.00 3.41
896 937 6.090223 TGCTGTACAAATCAACACGTATACTG 59.910 38.462 0.00 1.45 0.00 2.74
897 938 6.090358 GTGCTGTACAAATCAACACGTATACT 59.910 38.462 0.00 0.00 0.00 2.12
898 939 6.128769 TGTGCTGTACAAATCAACACGTATAC 60.129 38.462 0.00 0.00 35.48 1.47
899 940 5.927115 TGTGCTGTACAAATCAACACGTATA 59.073 36.000 0.00 0.00 35.48 1.47
900 941 4.752604 TGTGCTGTACAAATCAACACGTAT 59.247 37.500 0.00 0.00 35.48 3.06
901 942 4.025563 GTGTGCTGTACAAATCAACACGTA 60.026 41.667 0.00 0.00 41.89 3.57
902 943 2.939756 TGTGCTGTACAAATCAACACGT 59.060 40.909 0.00 0.00 35.48 4.49
903 944 3.288242 GTGTGCTGTACAAATCAACACG 58.712 45.455 0.00 0.00 41.89 4.49
904 945 3.550030 GGGTGTGCTGTACAAATCAACAC 60.550 47.826 0.00 13.57 41.89 3.32
905 946 2.621055 GGGTGTGCTGTACAAATCAACA 59.379 45.455 0.00 0.00 41.89 3.33
906 947 2.350388 CGGGTGTGCTGTACAAATCAAC 60.350 50.000 0.00 0.00 41.89 3.18
907 948 1.876799 CGGGTGTGCTGTACAAATCAA 59.123 47.619 0.00 0.00 41.89 2.57
908 949 1.202710 ACGGGTGTGCTGTACAAATCA 60.203 47.619 0.00 0.00 41.89 2.57
940 981 3.115554 CAGAAAGTGCGAAGTTTTTGGG 58.884 45.455 6.37 0.00 0.00 4.12
1107 1148 4.565850 GAGGGCGGGAGGGAGGAT 62.566 72.222 0.00 0.00 0.00 3.24
1368 1409 0.741326 GCATCTCGTCCAGCAGACTA 59.259 55.000 5.50 0.00 43.91 2.59
1440 1481 4.408821 GCCTCATCCACACGGCCA 62.409 66.667 2.24 0.00 36.56 5.36
1491 1532 4.314440 GAGTCCGCTGCACCACCA 62.314 66.667 0.00 0.00 0.00 4.17
1573 1614 1.137404 CTTGCCTCCCAAAATCGCG 59.863 57.895 0.00 0.00 31.94 5.87
1574 1615 0.109132 CACTTGCCTCCCAAAATCGC 60.109 55.000 0.00 0.00 31.94 4.58
1587 1628 0.179156 CCATTCGACCATGCACTTGC 60.179 55.000 0.00 0.00 42.50 4.01
1632 1673 1.408702 ACCAATGCGCAACTCAAAACT 59.591 42.857 17.11 0.00 0.00 2.66
1701 1742 3.242091 CGTCAATCTGTGCTAAACCATCG 60.242 47.826 0.00 0.00 0.00 3.84
1743 1784 2.054363 CGTGAAGCATAGCCATAGACG 58.946 52.381 0.00 0.00 0.00 4.18
1774 1815 6.781138 TGTCAAAAATATGTAACGCCTCATC 58.219 36.000 0.00 0.00 0.00 2.92
1776 1817 5.123186 CCTGTCAAAAATATGTAACGCCTCA 59.877 40.000 0.00 0.00 0.00 3.86
1854 1895 0.822532 CATCATCTCCAAGGCAGGCC 60.823 60.000 0.97 0.97 0.00 5.19
1910 1951 0.366871 CGTCGAAGAATCAGGCAACG 59.633 55.000 0.00 0.00 39.69 4.10
1926 1967 0.457853 TCAGAACGCTGGCATACGTC 60.458 55.000 14.85 9.38 42.68 4.34
1947 1988 3.371168 CATTCCTGAAAAACCACACACG 58.629 45.455 0.00 0.00 0.00 4.49
1950 1991 3.068024 TGAGCATTCCTGAAAAACCACAC 59.932 43.478 0.00 0.00 0.00 3.82
1989 2030 2.290323 ACTCTTTAGACCACACCCATGC 60.290 50.000 0.00 0.00 0.00 4.06
2073 2114 1.383109 TCGACAGGCATCCTCCCAT 60.383 57.895 0.00 0.00 0.00 4.00
2085 2126 1.066914 GCTCACTGAAAGCTCGACAG 58.933 55.000 11.44 11.44 37.60 3.51
2168 2209 4.820284 AAAACTCTTTTCGCCTCTTCTG 57.180 40.909 0.00 0.00 0.00 3.02
2226 2267 2.167487 GCTCAACCCAACAACCAAAGAA 59.833 45.455 0.00 0.00 0.00 2.52
2435 2476 4.805719 TGCAATACAGATCGATGACTGAAC 59.194 41.667 18.18 5.75 37.54 3.18
2721 2762 1.540267 GCATAATGCTCAGCTGATGGG 59.460 52.381 18.63 7.01 40.96 4.00
2790 2831 5.398603 AGGGCATATTCTCTATGAACTCG 57.601 43.478 0.00 0.00 37.52 4.18
2799 2840 4.137543 CGGCTTTAAAGGGCATATTCTCT 58.862 43.478 16.78 0.00 0.00 3.10
2847 2888 1.283793 CTGAGCTTTGCAACCACCG 59.716 57.895 0.00 0.00 0.00 4.94
2895 2936 1.209019 TCCATCTGCTTCAGCCTCTTC 59.791 52.381 0.00 0.00 41.18 2.87
2901 2942 2.220313 GATTCCTCCATCTGCTTCAGC 58.780 52.381 0.00 0.00 42.50 4.26
2937 2978 2.266554 GACAGCTGCACATACAGACTC 58.733 52.381 15.27 0.00 40.25 3.36
3406 3449 3.669939 AAAATGGTATCAGTGAGGGGG 57.330 47.619 0.00 0.00 0.00 5.40
3407 3450 4.641989 CAGAAAAATGGTATCAGTGAGGGG 59.358 45.833 0.00 0.00 0.00 4.79
3447 3490 3.888424 TGGAATGTCATCCAGCCTG 57.112 52.632 0.00 0.00 44.52 4.85
3500 3545 4.363138 GGATAGTTAAATTGGCTGCTTGC 58.637 43.478 0.00 0.00 41.94 4.01
3898 5005 0.237498 CGTGAGCGGTTTCCCTTTTC 59.763 55.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.