Multiple sequence alignment - TraesCS5D01G155100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G155100 chr5D 100.000 4953 0 0 1 4953 243317864 243312912 0.000000e+00 9147.0
1 TraesCS5D01G155100 chr5D 81.481 135 19 6 4517 4650 432043703 432043832 6.780000e-19 106.0
2 TraesCS5D01G155100 chr5B 90.735 2137 100 40 2880 4953 254944487 254946588 0.000000e+00 2760.0
3 TraesCS5D01G155100 chr5B 92.460 1114 43 15 685 1791 254942271 254943350 0.000000e+00 1554.0
4 TraesCS5D01G155100 chr5B 89.359 686 62 6 1819 2495 254943351 254944034 0.000000e+00 852.0
5 TraesCS5D01G155100 chr5B 88.467 685 74 5 1 682 254941624 254942306 0.000000e+00 822.0
6 TraesCS5D01G155100 chr5B 92.982 57 4 0 2827 2883 254944339 254944395 3.180000e-12 84.2
7 TraesCS5D01G155100 chr5A 95.854 1013 37 4 3533 4543 307709801 307710810 0.000000e+00 1633.0
8 TraesCS5D01G155100 chr5A 94.469 922 43 8 689 1604 307704350 307705269 0.000000e+00 1413.0
9 TraesCS5D01G155100 chr5A 94.140 785 20 12 2240 3023 307708747 307709506 0.000000e+00 1171.0
10 TraesCS5D01G155100 chr5A 94.048 420 15 3 4538 4953 307710888 307711301 3.250000e-176 628.0
11 TraesCS5D01G155100 chr5A 95.385 390 11 3 1865 2248 307705837 307706225 9.110000e-172 614.0
12 TraesCS5D01G155100 chr5A 89.037 301 9 8 3051 3327 307709500 307709800 7.890000e-93 351.0
13 TraesCS5D01G155100 chr5A 94.241 191 6 4 1677 1867 307705271 307705456 2.260000e-73 287.0
14 TraesCS5D01G155100 chr5A 76.892 489 86 20 4473 4953 588381044 588380575 8.230000e-63 252.0
15 TraesCS5D01G155100 chr5A 79.227 207 33 9 4473 4675 644918751 644918951 8.650000e-28 135.0
16 TraesCS5D01G155100 chr6D 91.028 613 48 5 76 684 431450581 431451190 0.000000e+00 821.0
17 TraesCS5D01G155100 chr6D 89.739 614 58 5 76 684 6831282 6830669 0.000000e+00 780.0
18 TraesCS5D01G155100 chr6D 89.016 610 59 5 76 681 311898534 311897929 0.000000e+00 749.0
19 TraesCS5D01G155100 chr6D 91.753 194 9 3 685 872 311897963 311897771 3.800000e-66 263.0
20 TraesCS5D01G155100 chr6D 90.722 194 12 3 685 872 6830706 6830513 2.290000e-63 254.0
21 TraesCS5D01G155100 chr6D 89.320 206 13 4 685 883 431451153 431451356 2.960000e-62 250.0
22 TraesCS5D01G155100 chr6D 74.590 488 84 22 4475 4937 297466162 297465690 1.420000e-40 178.0
23 TraesCS5D01G155100 chr6D 78.652 178 34 2 4767 4942 363383947 363384122 1.130000e-21 115.0
24 TraesCS5D01G155100 chr6D 80.000 145 26 3 4543 4686 78348879 78348737 2.440000e-18 104.0
25 TraesCS5D01G155100 chr6D 75.352 142 31 3 4543 4683 363319369 363319507 1.150000e-06 65.8
26 TraesCS5D01G155100 chr2D 89.216 612 62 4 77 684 110022664 110022053 0.000000e+00 761.0
27 TraesCS5D01G155100 chr2D 82.524 206 30 5 4511 4714 336734774 336734573 5.100000e-40 176.0
28 TraesCS5D01G155100 chr2D 77.108 166 32 3 4771 4934 45727094 45727255 1.900000e-14 91.6
29 TraesCS5D01G155100 chr7D 88.517 627 66 4 61 684 135439851 135440474 0.000000e+00 754.0
30 TraesCS5D01G155100 chr7D 87.500 216 16 7 685 889 613458342 613458127 6.410000e-59 239.0
31 TraesCS5D01G155100 chr3D 88.925 614 60 6 76 684 400749822 400750432 0.000000e+00 750.0
32 TraesCS5D01G155100 chr3D 81.590 239 35 8 4490 4724 587051368 587051601 6.550000e-44 189.0
33 TraesCS5D01G155100 chr6B 88.525 610 56 11 76 679 382062791 382062190 0.000000e+00 726.0
34 TraesCS5D01G155100 chr1B 87.928 613 68 6 76 684 685178272 685177662 0.000000e+00 717.0
35 TraesCS5D01G155100 chr1B 89.552 201 14 5 679 872 133115931 133115731 1.060000e-61 248.0
36 TraesCS5D01G155100 chr1D 89.474 209 13 3 685 884 222898614 222898822 6.360000e-64 255.0
37 TraesCS5D01G155100 chr1D 78.149 389 59 17 4580 4953 453267123 453267500 1.790000e-54 224.0
38 TraesCS5D01G155100 chr1D 75.654 382 65 16 4476 4851 485621932 485621573 1.100000e-36 165.0
39 TraesCS5D01G155100 chr3A 88.835 206 12 7 689 883 710388548 710388343 4.950000e-60 243.0
40 TraesCS5D01G155100 chr7A 76.427 403 70 13 4517 4910 507170605 507170219 1.410000e-45 195.0
41 TraesCS5D01G155100 chrUn 75.610 369 49 23 4476 4833 31746194 31746532 1.440000e-30 145.0
42 TraesCS5D01G155100 chr2B 83.333 144 23 1 4790 4932 621671383 621671240 1.120000e-26 132.0
43 TraesCS5D01G155100 chr2B 85.000 80 12 0 4854 4933 72890586 72890665 1.140000e-11 82.4
44 TraesCS5D01G155100 chr1A 85.965 57 8 0 4540 4596 23338765 23338709 1.490000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G155100 chr5D 243312912 243317864 4952 True 9147.00 9147 100.0000 1 4953 1 chr5D.!!$R1 4952
1 TraesCS5D01G155100 chr5B 254941624 254946588 4964 False 1214.44 2760 90.8006 1 4953 5 chr5B.!!$F1 4952
2 TraesCS5D01G155100 chr5A 307704350 307711301 6951 False 871.00 1633 93.8820 689 4953 7 chr5A.!!$F2 4264
3 TraesCS5D01G155100 chr6D 431450581 431451356 775 False 535.50 821 90.1740 76 883 2 chr6D.!!$F3 807
4 TraesCS5D01G155100 chr6D 6830513 6831282 769 True 517.00 780 90.2305 76 872 2 chr6D.!!$R3 796
5 TraesCS5D01G155100 chr6D 311897771 311898534 763 True 506.00 749 90.3845 76 872 2 chr6D.!!$R4 796
6 TraesCS5D01G155100 chr2D 110022053 110022664 611 True 761.00 761 89.2160 77 684 1 chr2D.!!$R1 607
7 TraesCS5D01G155100 chr7D 135439851 135440474 623 False 754.00 754 88.5170 61 684 1 chr7D.!!$F1 623
8 TraesCS5D01G155100 chr3D 400749822 400750432 610 False 750.00 750 88.9250 76 684 1 chr3D.!!$F1 608
9 TraesCS5D01G155100 chr6B 382062190 382062791 601 True 726.00 726 88.5250 76 679 1 chr6B.!!$R1 603
10 TraesCS5D01G155100 chr1B 685177662 685178272 610 True 717.00 717 87.9280 76 684 1 chr1B.!!$R2 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 229 0.103572 GGCAATGGCGATGCTGAATT 59.896 50.0 13.05 0.0 43.34 2.17 F
654 669 0.441533 GCATATCAGCGATGAAGCCG 59.558 55.0 7.76 0.0 38.01 5.52 F
676 691 0.605589 CCAAGCTCGAGTGAGAAGGT 59.394 55.0 15.13 0.0 45.57 3.50 F
683 698 0.811915 CGAGTGAGAAGGTGATCCGT 59.188 55.0 0.00 0.0 39.05 4.69 F
1566 1589 1.022451 TCGGGTAATGTTCCTTGCGC 61.022 55.0 0.00 0.0 0.00 6.09 F
2904 5978 0.514691 GCATGCGACTTATGCTAGCC 59.485 55.0 13.29 0.0 45.64 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1751 0.106521 TGCGCAATGCTAGCCATAGA 59.893 50.0 8.16 0.0 46.63 1.98 R
2560 5512 0.682532 AGGATCTCAGCGTCTCTGCA 60.683 55.0 0.00 0.0 42.56 4.41 R
2568 5520 1.012841 GGCAAAGAAGGATCTCAGCG 58.987 55.0 0.00 0.0 36.66 5.18 R
2569 5521 2.119801 TGGCAAAGAAGGATCTCAGC 57.880 50.0 0.00 0.0 33.77 4.26 R
3279 6400 0.894835 CAGGTATGGGGTTTTGGCAC 59.105 55.0 0.00 0.0 0.00 5.01 R
4752 7965 0.849540 AACCCTCCCTAACCCCCAAG 60.850 60.0 0.00 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.866207 AGAAAAGAAGAACGGTAAGATGGT 58.134 37.500 0.00 0.00 0.00 3.55
31 32 7.621796 AGAAAAGAAGAACGGTAAGATGGTAT 58.378 34.615 0.00 0.00 0.00 2.73
56 57 1.207329 GAACCTGCGTATCCTCACCTT 59.793 52.381 0.00 0.00 0.00 3.50
64 65 1.632018 TATCCTCACCTTTGCCCGGG 61.632 60.000 19.09 19.09 0.00 5.73
69 70 3.840132 ACCTTTGCCCGGGGGTTT 61.840 61.111 25.28 0.00 37.65 3.27
101 102 4.762825 CCTTTTGGTCGTCGGTGA 57.237 55.556 0.00 0.00 34.07 4.02
130 134 2.186644 CCGGATCCGCATGTGTGA 59.813 61.111 29.12 2.80 38.24 3.58
157 162 5.880164 TTTTAGCTTTTGGTTTTAGGGCT 57.120 34.783 0.00 0.00 0.00 5.19
158 163 6.980416 TTTTAGCTTTTGGTTTTAGGGCTA 57.020 33.333 0.00 0.00 0.00 3.93
210 215 3.694538 GGCTTTGGTGGCGGCAAT 61.695 61.111 15.50 0.00 0.00 3.56
224 229 0.103572 GGCAATGGCGATGCTGAATT 59.896 50.000 13.05 0.00 43.34 2.17
225 230 1.472026 GGCAATGGCGATGCTGAATTT 60.472 47.619 13.05 0.00 43.34 1.82
287 293 2.649312 TGTTGGTGAAGGATCTGGGAAT 59.351 45.455 0.00 0.00 0.00 3.01
358 370 0.545171 CATGTGTCCTCAGGCTCCAT 59.455 55.000 0.00 0.00 0.00 3.41
450 462 1.094785 TCTGCATCGACGACATCTGA 58.905 50.000 0.00 0.00 0.00 3.27
490 502 3.487202 CGTGGTTCGTGGATGGCG 61.487 66.667 0.00 0.00 34.52 5.69
524 539 5.485353 TCCTCCTTTGATGTCTTAGTCATGT 59.515 40.000 0.00 0.00 0.00 3.21
531 546 1.628340 TGTCTTAGTCATGTGGGGTGG 59.372 52.381 0.00 0.00 0.00 4.61
546 561 2.838202 GGGGTGGTAGATCTGAAGTTCA 59.162 50.000 5.18 5.25 0.00 3.18
652 667 2.876992 CTGCATATCAGCGATGAAGC 57.123 50.000 7.76 13.11 35.78 3.86
653 668 1.463831 CTGCATATCAGCGATGAAGCC 59.536 52.381 7.76 0.00 35.78 4.35
654 669 0.441533 GCATATCAGCGATGAAGCCG 59.558 55.000 7.76 0.00 38.01 5.52
661 676 4.228097 CGATGAAGCCGCGCCAAG 62.228 66.667 0.00 0.00 0.00 3.61
662 677 4.543084 GATGAAGCCGCGCCAAGC 62.543 66.667 0.00 2.00 43.95 4.01
671 686 3.184683 GCGCCAAGCTCGAGTGAG 61.185 66.667 15.13 3.78 45.49 3.51
672 687 2.568612 CGCCAAGCTCGAGTGAGA 59.431 61.111 15.13 0.00 45.57 3.27
673 688 1.080501 CGCCAAGCTCGAGTGAGAA 60.081 57.895 15.13 0.00 45.57 2.87
674 689 1.075425 CGCCAAGCTCGAGTGAGAAG 61.075 60.000 15.13 0.00 45.57 2.85
675 690 0.739112 GCCAAGCTCGAGTGAGAAGG 60.739 60.000 15.13 8.91 45.57 3.46
676 691 0.605589 CCAAGCTCGAGTGAGAAGGT 59.394 55.000 15.13 0.00 45.57 3.50
677 692 1.671261 CCAAGCTCGAGTGAGAAGGTG 60.671 57.143 15.13 1.21 45.57 4.00
678 693 1.270826 CAAGCTCGAGTGAGAAGGTGA 59.729 52.381 15.13 0.00 45.57 4.02
679 694 1.846007 AGCTCGAGTGAGAAGGTGAT 58.154 50.000 15.13 0.00 45.57 3.06
680 695 1.748493 AGCTCGAGTGAGAAGGTGATC 59.252 52.381 15.13 0.00 45.57 2.92
681 696 1.202359 GCTCGAGTGAGAAGGTGATCC 60.202 57.143 15.13 0.00 45.57 3.36
682 697 1.064803 CTCGAGTGAGAAGGTGATCCG 59.935 57.143 3.62 0.00 45.57 4.18
683 698 0.811915 CGAGTGAGAAGGTGATCCGT 59.188 55.000 0.00 0.00 39.05 4.69
684 699 2.014857 CGAGTGAGAAGGTGATCCGTA 58.985 52.381 0.00 0.00 39.05 4.02
685 700 2.619177 CGAGTGAGAAGGTGATCCGTAT 59.381 50.000 0.00 0.00 39.05 3.06
686 701 3.549019 CGAGTGAGAAGGTGATCCGTATG 60.549 52.174 0.00 0.00 39.05 2.39
687 702 3.632333 AGTGAGAAGGTGATCCGTATGA 58.368 45.455 0.00 0.00 39.05 2.15
830 847 4.035091 TCAGTTTTGTCATGTCGGTCTTTG 59.965 41.667 0.00 0.00 0.00 2.77
971 994 3.805307 CAGGCTCGAGTCGCGACT 61.805 66.667 39.89 39.89 45.59 4.18
1182 1205 2.511452 CGCCCTATCCTCCCACCAG 61.511 68.421 0.00 0.00 0.00 4.00
1524 1547 2.669133 CCCTGGCGATGGTGGAGAA 61.669 63.158 0.00 0.00 0.00 2.87
1525 1548 1.450312 CCTGGCGATGGTGGAGAAC 60.450 63.158 0.00 0.00 0.00 3.01
1566 1589 1.022451 TCGGGTAATGTTCCTTGCGC 61.022 55.000 0.00 0.00 0.00 6.09
1615 1640 6.930722 TGATGCTATGTATACCATGTGTCAAG 59.069 38.462 0.00 0.00 34.86 3.02
1618 1643 6.049149 GCTATGTATACCATGTGTCAAGTGT 58.951 40.000 0.00 0.00 34.86 3.55
1619 1644 6.201044 GCTATGTATACCATGTGTCAAGTGTC 59.799 42.308 0.00 0.00 34.86 3.67
1620 1645 5.476091 TGTATACCATGTGTCAAGTGTCA 57.524 39.130 0.00 0.00 0.00 3.58
1621 1646 5.859495 TGTATACCATGTGTCAAGTGTCAA 58.141 37.500 0.00 0.00 0.00 3.18
1622 1647 5.699001 TGTATACCATGTGTCAAGTGTCAAC 59.301 40.000 0.00 0.00 0.00 3.18
1623 1648 3.281727 ACCATGTGTCAAGTGTCAACT 57.718 42.857 0.00 0.00 38.71 3.16
1624 1649 2.945008 ACCATGTGTCAAGTGTCAACTG 59.055 45.455 0.00 0.00 36.51 3.16
1625 1650 3.205338 CCATGTGTCAAGTGTCAACTGA 58.795 45.455 0.00 0.00 36.51 3.41
1626 1651 3.627123 CCATGTGTCAAGTGTCAACTGAA 59.373 43.478 0.00 0.00 36.51 3.02
1627 1652 4.496341 CCATGTGTCAAGTGTCAACTGAAC 60.496 45.833 0.00 0.00 36.51 3.18
1628 1653 3.937814 TGTGTCAAGTGTCAACTGAACT 58.062 40.909 0.00 0.00 36.51 3.01
1629 1654 3.684305 TGTGTCAAGTGTCAACTGAACTG 59.316 43.478 0.00 0.00 36.51 3.16
1630 1655 3.932710 GTGTCAAGTGTCAACTGAACTGA 59.067 43.478 0.00 0.00 36.51 3.41
1631 1656 4.391830 GTGTCAAGTGTCAACTGAACTGAA 59.608 41.667 0.00 0.00 36.51 3.02
1632 1657 4.391830 TGTCAAGTGTCAACTGAACTGAAC 59.608 41.667 0.00 0.00 36.51 3.18
1633 1658 4.631813 GTCAAGTGTCAACTGAACTGAACT 59.368 41.667 0.00 0.00 36.51 3.01
1634 1659 4.631377 TCAAGTGTCAACTGAACTGAACTG 59.369 41.667 0.00 0.00 36.51 3.16
1635 1660 4.471904 AGTGTCAACTGAACTGAACTGA 57.528 40.909 0.00 0.00 34.48 3.41
1636 1661 4.832248 AGTGTCAACTGAACTGAACTGAA 58.168 39.130 0.00 0.00 34.48 3.02
1637 1662 4.631813 AGTGTCAACTGAACTGAACTGAAC 59.368 41.667 0.00 0.00 34.48 3.18
1638 1663 4.631813 GTGTCAACTGAACTGAACTGAACT 59.368 41.667 0.00 0.00 0.00 3.01
1639 1664 4.631377 TGTCAACTGAACTGAACTGAACTG 59.369 41.667 0.00 0.00 0.00 3.16
1640 1665 4.870426 GTCAACTGAACTGAACTGAACTGA 59.130 41.667 0.00 0.00 0.00 3.41
1668 1693 5.514500 ACTGATACATTGGGGTTTACTGT 57.486 39.130 0.00 0.00 0.00 3.55
1683 1708 5.163332 GGTTTACTGTATGGAACTAGGGAGG 60.163 48.000 0.00 0.00 0.00 4.30
1684 1709 3.778622 ACTGTATGGAACTAGGGAGGT 57.221 47.619 0.00 0.00 0.00 3.85
1691 1716 1.139853 GGAACTAGGGAGGTGAGCATG 59.860 57.143 0.00 0.00 0.00 4.06
1697 1722 1.028868 GGGAGGTGAGCATGCTGAAC 61.029 60.000 28.27 21.49 0.00 3.18
1766 1791 4.775236 CAGCCTGAAATCCTAGCTTAGTT 58.225 43.478 0.00 0.00 0.00 2.24
1782 1807 6.199393 AGCTTAGTTTTTACTTTCTGTTGCG 58.801 36.000 0.00 0.00 0.00 4.85
1816 1841 8.385858 GTTGGTACTTTGTTATTCCGTTATCTC 58.614 37.037 0.00 0.00 0.00 2.75
1817 1842 7.844009 TGGTACTTTGTTATTCCGTTATCTCT 58.156 34.615 0.00 0.00 0.00 3.10
1893 2301 8.964476 AACATGAATACGATAGGAATGAAGTT 57.036 30.769 0.00 0.00 43.77 2.66
1894 2302 8.964476 ACATGAATACGATAGGAATGAAGTTT 57.036 30.769 0.00 0.00 43.77 2.66
1912 2320 8.154649 TGAAGTTTAAATCACAGGACTTCTTC 57.845 34.615 13.23 6.81 41.97 2.87
2111 2520 8.594687 CAAAGGGCATTTATACAGAAAATTTCG 58.405 33.333 0.00 0.00 34.02 3.46
2562 5514 6.862209 TGGAATTTTGGATATTACACTGTGC 58.138 36.000 7.90 0.00 0.00 4.57
2563 5515 6.435591 TGGAATTTTGGATATTACACTGTGCA 59.564 34.615 7.90 0.00 0.00 4.57
2564 5516 6.974622 GGAATTTTGGATATTACACTGTGCAG 59.025 38.462 7.90 0.00 0.00 4.41
2565 5517 7.148086 GGAATTTTGGATATTACACTGTGCAGA 60.148 37.037 7.90 0.00 0.00 4.26
2566 5518 6.741992 TTTTGGATATTACACTGTGCAGAG 57.258 37.500 9.74 9.74 0.00 3.35
2567 5519 5.675684 TTGGATATTACACTGTGCAGAGA 57.324 39.130 19.13 0.00 0.00 3.10
2568 5520 5.011090 TGGATATTACACTGTGCAGAGAC 57.989 43.478 19.13 0.00 0.00 3.36
2569 5521 4.045104 GGATATTACACTGTGCAGAGACG 58.955 47.826 19.13 10.48 0.00 4.18
2849 5828 3.878086 AGTTTGCGTGAATGTAGTGTG 57.122 42.857 0.00 0.00 0.00 3.82
2904 5978 0.514691 GCATGCGACTTATGCTAGCC 59.485 55.000 13.29 0.00 45.64 3.93
2964 6039 5.586243 GCATGAGATACAGCAAGAGGTTTTA 59.414 40.000 0.00 0.00 0.00 1.52
2991 6066 6.653740 CGATTATTATTGTAAGGGAAGGGACC 59.346 42.308 0.00 0.00 0.00 4.46
3086 6162 5.523916 CACTTTTTCGGGATCGACATAGATT 59.476 40.000 0.00 0.00 45.92 2.40
3238 6357 7.448748 AAACCTGTACAGATTGGTCATTTAC 57.551 36.000 24.68 0.00 31.64 2.01
3245 6364 6.178239 ACAGATTGGTCATTTACGCTTAAC 57.822 37.500 0.00 0.00 0.00 2.01
3247 6366 4.331717 AGATTGGTCATTTACGCTTAACCG 59.668 41.667 0.00 0.00 0.00 4.44
3254 6375 6.081693 GTCATTTACGCTTAACCGTTTTGAT 58.918 36.000 0.43 0.00 42.20 2.57
3337 6458 3.961408 GACTAGACTGGGCTTAAGATGGA 59.039 47.826 6.67 0.00 0.00 3.41
3338 6459 4.561752 ACTAGACTGGGCTTAAGATGGAT 58.438 43.478 6.67 0.00 0.00 3.41
3339 6460 5.716979 ACTAGACTGGGCTTAAGATGGATA 58.283 41.667 6.67 0.00 0.00 2.59
3347 6468 6.793478 TGGGCTTAAGATGGATAATAATGCT 58.207 36.000 6.67 0.00 0.00 3.79
3350 6471 7.414540 GGGCTTAAGATGGATAATAATGCTTCG 60.415 40.741 6.67 0.00 34.17 3.79
3417 6538 2.268762 TGTGCTCAAAGTGCATACCA 57.731 45.000 0.00 0.00 42.69 3.25
3464 6586 6.893759 TCGGTTACATCTGTTGTTGTTAATG 58.106 36.000 0.00 0.00 39.87 1.90
3490 6612 4.804261 GCCTATGGTTTGTTCTGAGTGAGT 60.804 45.833 0.00 0.00 0.00 3.41
3518 6640 5.186256 TGGTGCCTATGGTTTATTCTGAA 57.814 39.130 0.00 0.00 0.00 3.02
3530 6652 1.251251 ATTCTGAAGCCAGGTGCAAC 58.749 50.000 0.00 0.00 44.83 4.17
3542 6664 2.411409 CAGGTGCAACAACAACAACAAC 59.589 45.455 3.64 0.00 39.98 3.32
3590 6715 7.596494 TGTGTTTCTCATCCATGAAATTCTTC 58.404 34.615 0.00 0.00 36.18 2.87
3591 6716 7.449395 TGTGTTTCTCATCCATGAAATTCTTCT 59.551 33.333 0.00 0.00 36.18 2.85
3592 6717 8.302438 GTGTTTCTCATCCATGAAATTCTTCTT 58.698 33.333 0.00 0.00 36.18 2.52
3613 6738 8.575565 TTCTTGTCGATGTTAACTATATCAGC 57.424 34.615 7.22 0.00 0.00 4.26
3707 6834 5.532032 ACCAAAAAGGCAATTGATTCCTTTG 59.468 36.000 21.92 15.90 46.25 2.77
4015 7142 4.197750 TGACCTATTAGTCCTCGTCTGTC 58.802 47.826 0.00 0.00 35.83 3.51
4026 7153 2.213499 CTCGTCTGTCCAACTTTGCTT 58.787 47.619 0.00 0.00 0.00 3.91
4167 7294 0.384353 GGCGTTCTTGTTGAGTTCGC 60.384 55.000 0.00 0.00 42.60 4.70
4225 7352 0.737219 GCTGATTGGTGATGCTGGAC 59.263 55.000 0.00 0.00 0.00 4.02
4467 7594 4.257267 TGTGATATCGCGATGGAAGATT 57.743 40.909 31.05 5.78 0.00 2.40
4468 7595 5.385509 TGTGATATCGCGATGGAAGATTA 57.614 39.130 31.05 10.35 0.00 1.75
4469 7596 5.161358 TGTGATATCGCGATGGAAGATTAC 58.839 41.667 31.05 21.00 0.00 1.89
4470 7597 5.048013 TGTGATATCGCGATGGAAGATTACT 60.048 40.000 31.05 3.57 0.00 2.24
4471 7598 5.513495 GTGATATCGCGATGGAAGATTACTC 59.487 44.000 31.05 6.08 0.00 2.59
4472 7599 2.401017 TCGCGATGGAAGATTACTCG 57.599 50.000 3.71 0.00 0.00 4.18
4612 7822 3.064271 TGTTCGTTGCAACAAGTACCTTC 59.936 43.478 28.01 9.06 33.21 3.46
4613 7823 2.907634 TCGTTGCAACAAGTACCTTCA 58.092 42.857 28.01 0.00 0.00 3.02
4748 7961 4.661247 TTGCTTTTAGGGTTTAGGGCTA 57.339 40.909 0.00 0.00 0.00 3.93
4752 7965 1.514983 TTAGGGTTTAGGGCTAGGGC 58.485 55.000 0.00 0.00 37.82 5.19
4753 7966 0.646055 TAGGGTTTAGGGCTAGGGCT 59.354 55.000 0.00 0.00 38.73 5.19
4755 7968 0.106669 GGGTTTAGGGCTAGGGCTTG 60.107 60.000 0.00 0.00 38.73 4.01
4756 7969 0.106669 GGTTTAGGGCTAGGGCTTGG 60.107 60.000 0.00 0.00 38.73 3.61
4762 7975 2.004693 GGCTAGGGCTTGGGGGTTA 61.005 63.158 0.00 0.00 38.73 2.85
4763 7976 1.532238 GCTAGGGCTTGGGGGTTAG 59.468 63.158 0.00 0.00 35.22 2.34
4764 7977 1.996070 GCTAGGGCTTGGGGGTTAGG 61.996 65.000 0.00 0.00 35.22 2.69
4765 7978 1.308392 TAGGGCTTGGGGGTTAGGG 60.308 63.158 0.00 0.00 0.00 3.53
4891 8105 6.073276 TGTCAAAACATATTCAGAAGTGGTCG 60.073 38.462 3.99 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.070424 TCCATACCATCTTACCGTTCTTCTTT 60.070 38.462 0.00 0.00 0.00 2.52
29 30 3.239449 AGGATACGCAGGTTCATCCATA 58.761 45.455 2.56 0.00 46.39 2.74
31 32 1.412710 GAGGATACGCAGGTTCATCCA 59.587 52.381 2.56 0.00 46.39 3.41
101 102 4.880426 ATCCGGCGACCCCCTCAT 62.880 66.667 9.30 0.00 0.00 2.90
130 134 7.390440 GCCCTAAAACCAAAAGCTAAAATGATT 59.610 33.333 0.00 0.00 0.00 2.57
157 162 5.646360 CGATCCAAAACCCTAAGCTTCTTTA 59.354 40.000 0.00 0.00 0.00 1.85
158 163 4.459337 CGATCCAAAACCCTAAGCTTCTTT 59.541 41.667 0.00 0.00 0.00 2.52
210 215 2.355756 GCTTCTAAATTCAGCATCGCCA 59.644 45.455 0.00 0.00 33.45 5.69
224 229 3.385111 GGAGAAGAATCCGGAGCTTCTAA 59.615 47.826 34.42 5.14 45.97 2.10
225 230 2.959707 GGAGAAGAATCCGGAGCTTCTA 59.040 50.000 34.42 5.85 45.97 2.10
287 293 1.423584 TCCCTGCTTGAACAGACTGA 58.576 50.000 10.08 0.00 40.25 3.41
490 502 3.732048 TCAAAGGAGGAAACCATACCC 57.268 47.619 0.00 0.00 0.00 3.69
524 539 2.642171 ACTTCAGATCTACCACCCCA 57.358 50.000 0.00 0.00 0.00 4.96
531 546 4.033358 CACGCCATTGAACTTCAGATCTAC 59.967 45.833 0.00 0.00 0.00 2.59
546 561 4.715523 CACCCCGGACACGCCATT 62.716 66.667 0.73 0.00 39.22 3.16
654 669 3.184683 CTCACTCGAGCTTGGCGC 61.185 66.667 13.61 0.00 39.57 6.53
655 670 1.075425 CTTCTCACTCGAGCTTGGCG 61.075 60.000 13.61 0.00 39.30 5.69
656 671 0.739112 CCTTCTCACTCGAGCTTGGC 60.739 60.000 13.61 0.00 39.30 4.52
657 672 0.605589 ACCTTCTCACTCGAGCTTGG 59.394 55.000 13.61 8.94 39.30 3.61
658 673 1.270826 TCACCTTCTCACTCGAGCTTG 59.729 52.381 13.61 4.30 39.30 4.01
659 674 1.621992 TCACCTTCTCACTCGAGCTT 58.378 50.000 13.61 0.00 39.30 3.74
660 675 1.748493 GATCACCTTCTCACTCGAGCT 59.252 52.381 13.61 0.00 39.30 4.09
661 676 1.202359 GGATCACCTTCTCACTCGAGC 60.202 57.143 13.61 0.00 39.30 5.03
662 677 1.064803 CGGATCACCTTCTCACTCGAG 59.935 57.143 11.84 11.84 40.98 4.04
663 678 1.095600 CGGATCACCTTCTCACTCGA 58.904 55.000 0.00 0.00 0.00 4.04
664 679 0.811915 ACGGATCACCTTCTCACTCG 59.188 55.000 0.00 0.00 0.00 4.18
665 680 3.632604 TCATACGGATCACCTTCTCACTC 59.367 47.826 0.00 0.00 0.00 3.51
666 681 3.632333 TCATACGGATCACCTTCTCACT 58.368 45.455 0.00 0.00 0.00 3.41
667 682 4.363999 CTTCATACGGATCACCTTCTCAC 58.636 47.826 0.00 0.00 0.00 3.51
668 683 3.181475 GCTTCATACGGATCACCTTCTCA 60.181 47.826 0.00 0.00 0.00 3.27
669 684 3.385577 GCTTCATACGGATCACCTTCTC 58.614 50.000 0.00 0.00 0.00 2.87
670 685 2.103263 GGCTTCATACGGATCACCTTCT 59.897 50.000 0.00 0.00 0.00 2.85
671 686 2.484889 GGCTTCATACGGATCACCTTC 58.515 52.381 0.00 0.00 0.00 3.46
672 687 1.202533 CGGCTTCATACGGATCACCTT 60.203 52.381 0.00 0.00 0.00 3.50
673 688 0.389391 CGGCTTCATACGGATCACCT 59.611 55.000 0.00 0.00 0.00 4.00
674 689 1.222115 GCGGCTTCATACGGATCACC 61.222 60.000 0.00 0.00 0.00 4.02
675 690 1.548973 CGCGGCTTCATACGGATCAC 61.549 60.000 0.00 0.00 0.00 3.06
676 691 1.299850 CGCGGCTTCATACGGATCA 60.300 57.895 0.00 0.00 0.00 2.92
677 692 1.276145 GACGCGGCTTCATACGGATC 61.276 60.000 12.47 0.00 0.00 3.36
678 693 1.299926 GACGCGGCTTCATACGGAT 60.300 57.895 12.47 0.00 0.00 4.18
679 694 2.103538 GACGCGGCTTCATACGGA 59.896 61.111 12.47 0.00 0.00 4.69
680 695 1.752501 CTTGACGCGGCTTCATACGG 61.753 60.000 15.80 0.00 0.00 4.02
681 696 1.631072 CTTGACGCGGCTTCATACG 59.369 57.895 15.80 0.00 0.00 3.06
682 697 1.084370 AGCTTGACGCGGCTTCATAC 61.084 55.000 15.80 5.68 45.59 2.39
683 698 0.806102 GAGCTTGACGCGGCTTCATA 60.806 55.000 15.80 0.00 45.59 2.15
684 699 2.046892 AGCTTGACGCGGCTTCAT 60.047 55.556 15.80 0.00 45.59 2.57
685 700 2.738521 GAGCTTGACGCGGCTTCA 60.739 61.111 15.80 4.92 45.59 3.02
686 701 3.843240 CGAGCTTGACGCGGCTTC 61.843 66.667 15.80 4.81 45.59 3.86
687 702 4.357947 TCGAGCTTGACGCGGCTT 62.358 61.111 15.80 0.00 45.59 4.35
971 994 1.068281 GCTTGAGAGAGATGCGGATCA 59.932 52.381 19.67 0.00 0.00 2.92
1139 1162 2.844348 GGTACCTGAGAATGGAGGGAAA 59.156 50.000 4.06 0.00 33.16 3.13
1524 1547 0.392998 CTGGCCCTTCATACTTGCGT 60.393 55.000 0.00 0.00 0.00 5.24
1525 1548 0.107703 TCTGGCCCTTCATACTTGCG 60.108 55.000 0.00 0.00 0.00 4.85
1615 1640 4.631813 AGTTCAGTTCAGTTCAGTTGACAC 59.368 41.667 0.00 0.00 0.00 3.67
1618 1643 5.084818 TCAGTTCAGTTCAGTTCAGTTGA 57.915 39.130 0.00 0.00 0.00 3.18
1619 1644 5.352569 AGTTCAGTTCAGTTCAGTTCAGTTG 59.647 40.000 0.00 0.00 0.00 3.16
1620 1645 5.352569 CAGTTCAGTTCAGTTCAGTTCAGTT 59.647 40.000 0.00 0.00 0.00 3.16
1621 1646 4.872691 CAGTTCAGTTCAGTTCAGTTCAGT 59.127 41.667 0.00 0.00 0.00 3.41
1622 1647 5.111989 TCAGTTCAGTTCAGTTCAGTTCAG 58.888 41.667 0.00 0.00 0.00 3.02
1623 1648 5.084818 TCAGTTCAGTTCAGTTCAGTTCA 57.915 39.130 0.00 0.00 0.00 3.18
1624 1649 5.582665 AGTTCAGTTCAGTTCAGTTCAGTTC 59.417 40.000 0.00 0.00 0.00 3.01
1625 1650 5.352569 CAGTTCAGTTCAGTTCAGTTCAGTT 59.647 40.000 0.00 0.00 0.00 3.16
1626 1651 4.872691 CAGTTCAGTTCAGTTCAGTTCAGT 59.127 41.667 0.00 0.00 0.00 3.41
1627 1652 5.111989 TCAGTTCAGTTCAGTTCAGTTCAG 58.888 41.667 0.00 0.00 0.00 3.02
1628 1653 5.084818 TCAGTTCAGTTCAGTTCAGTTCA 57.915 39.130 0.00 0.00 0.00 3.18
1629 1654 6.701841 TGTATCAGTTCAGTTCAGTTCAGTTC 59.298 38.462 0.00 0.00 0.00 3.01
1630 1655 6.582636 TGTATCAGTTCAGTTCAGTTCAGTT 58.417 36.000 0.00 0.00 0.00 3.16
1631 1656 6.161855 TGTATCAGTTCAGTTCAGTTCAGT 57.838 37.500 0.00 0.00 0.00 3.41
1632 1657 7.360691 CCAATGTATCAGTTCAGTTCAGTTCAG 60.361 40.741 0.00 0.00 0.00 3.02
1633 1658 6.427853 CCAATGTATCAGTTCAGTTCAGTTCA 59.572 38.462 0.00 0.00 0.00 3.18
1634 1659 6.128172 CCCAATGTATCAGTTCAGTTCAGTTC 60.128 42.308 0.00 0.00 0.00 3.01
1635 1660 5.707298 CCCAATGTATCAGTTCAGTTCAGTT 59.293 40.000 0.00 0.00 0.00 3.16
1636 1661 5.248640 CCCAATGTATCAGTTCAGTTCAGT 58.751 41.667 0.00 0.00 0.00 3.41
1637 1662 4.637534 CCCCAATGTATCAGTTCAGTTCAG 59.362 45.833 0.00 0.00 0.00 3.02
1638 1663 4.042809 ACCCCAATGTATCAGTTCAGTTCA 59.957 41.667 0.00 0.00 0.00 3.18
1639 1664 4.589908 ACCCCAATGTATCAGTTCAGTTC 58.410 43.478 0.00 0.00 0.00 3.01
1640 1665 4.657814 ACCCCAATGTATCAGTTCAGTT 57.342 40.909 0.00 0.00 0.00 3.16
1668 1693 2.023404 TGCTCACCTCCCTAGTTCCATA 60.023 50.000 0.00 0.00 0.00 2.74
1683 1708 4.671250 GCTTTCTTAGTTCAGCATGCTCAC 60.671 45.833 19.68 17.43 34.76 3.51
1684 1709 3.438087 GCTTTCTTAGTTCAGCATGCTCA 59.562 43.478 19.68 0.06 34.76 4.26
1691 1716 3.815401 TGTTCCTGCTTTCTTAGTTCAGC 59.185 43.478 0.00 0.00 0.00 4.26
1726 1751 0.106521 TGCGCAATGCTAGCCATAGA 59.893 50.000 8.16 0.00 46.63 1.98
1766 1791 3.378742 TCCTTGCGCAACAGAAAGTAAAA 59.621 39.130 21.02 0.00 0.00 1.52
1782 1807 4.584327 AACAAAGTACCAACATCCTTGC 57.416 40.909 0.00 0.00 0.00 4.01
1817 1842 5.830457 CAGGTTCCACTATCACTCTATCAGA 59.170 44.000 0.00 0.00 0.00 3.27
1877 2285 8.786826 TGTGATTTAAACTTCATTCCTATCGT 57.213 30.769 0.00 0.00 0.00 3.73
1893 2301 7.873719 TTTGTGAAGAAGTCCTGTGATTTAA 57.126 32.000 0.00 0.00 0.00 1.52
1894 2302 7.201785 GGTTTTGTGAAGAAGTCCTGTGATTTA 60.202 37.037 0.00 0.00 0.00 1.40
2021 2429 1.488705 ATGCTCCAGTTCCACCGGAA 61.489 55.000 9.46 0.00 39.66 4.30
2153 2567 1.656095 GAGAAATTCTGCGGTCAGTCG 59.344 52.381 0.00 0.00 41.10 4.18
2428 5380 6.377146 GTCATCCAAAGAGTTAGGGCAATAAA 59.623 38.462 0.00 0.00 0.00 1.40
2431 5383 4.018050 AGTCATCCAAAGAGTTAGGGCAAT 60.018 41.667 0.00 0.00 0.00 3.56
2502 5454 6.414732 CACTATCAAATACTCCACAAAGGGA 58.585 40.000 0.00 0.00 38.24 4.20
2503 5455 5.590259 CCACTATCAAATACTCCACAAAGGG 59.410 44.000 0.00 0.00 38.24 3.95
2504 5456 6.180472 ACCACTATCAAATACTCCACAAAGG 58.820 40.000 0.00 0.00 39.47 3.11
2505 5457 7.390440 TCAACCACTATCAAATACTCCACAAAG 59.610 37.037 0.00 0.00 0.00 2.77
2506 5458 7.227873 TCAACCACTATCAAATACTCCACAAA 58.772 34.615 0.00 0.00 0.00 2.83
2507 5459 6.774673 TCAACCACTATCAAATACTCCACAA 58.225 36.000 0.00 0.00 0.00 3.33
2508 5460 6.367374 TCAACCACTATCAAATACTCCACA 57.633 37.500 0.00 0.00 0.00 4.17
2509 5461 7.681939 TTTCAACCACTATCAAATACTCCAC 57.318 36.000 0.00 0.00 0.00 4.02
2510 5462 8.877864 AATTTCAACCACTATCAAATACTCCA 57.122 30.769 0.00 0.00 0.00 3.86
2560 5512 0.682532 AGGATCTCAGCGTCTCTGCA 60.683 55.000 0.00 0.00 42.56 4.41
2562 5514 2.023673 AGAAGGATCTCAGCGTCTCTG 58.976 52.381 0.00 0.00 44.21 3.35
2563 5515 2.435372 AGAAGGATCTCAGCGTCTCT 57.565 50.000 0.00 0.00 0.00 3.10
2564 5516 3.186119 CAAAGAAGGATCTCAGCGTCTC 58.814 50.000 0.00 0.00 33.77 3.36
2565 5517 2.676463 GCAAAGAAGGATCTCAGCGTCT 60.676 50.000 0.00 0.00 33.77 4.18
2566 5518 1.663135 GCAAAGAAGGATCTCAGCGTC 59.337 52.381 0.00 0.00 33.77 5.19
2567 5519 1.677217 GGCAAAGAAGGATCTCAGCGT 60.677 52.381 0.00 0.00 36.66 5.07
2568 5520 1.012841 GGCAAAGAAGGATCTCAGCG 58.987 55.000 0.00 0.00 36.66 5.18
2569 5521 2.119801 TGGCAAAGAAGGATCTCAGC 57.880 50.000 0.00 0.00 33.77 4.26
2753 5706 5.292834 CGAGCAGCAATCTTGAGAAATTAGA 59.707 40.000 0.00 0.00 0.00 2.10
2796 5749 4.752101 ACTAAAGGCGACATATGATGCTTC 59.248 41.667 10.38 1.48 0.00 3.86
2904 5978 3.007635 GAGAAAGGTACCGGTTCCAATG 58.992 50.000 29.51 0.00 0.00 2.82
2964 6039 8.101419 GTCCCTTCCCTTACAATAATAATCGAT 58.899 37.037 0.00 0.00 0.00 3.59
2991 6066 8.674607 GTTCCTACTATCAAAACCATTACCTTG 58.325 37.037 0.00 0.00 0.00 3.61
3033 6109 4.771590 ATTGTACACCTTGCAGTCAATG 57.228 40.909 0.00 0.00 0.00 2.82
3034 6110 6.892658 TTAATTGTACACCTTGCAGTCAAT 57.107 33.333 0.00 0.00 0.00 2.57
3050 6126 7.045126 TCCCGAAAAAGTGATGTTTAATTGT 57.955 32.000 0.00 0.00 0.00 2.71
3053 6129 6.373216 TCGATCCCGAAAAAGTGATGTTTAAT 59.627 34.615 0.00 0.00 42.51 1.40
3086 6162 7.222805 CAGCACAGCTATTTCGAGTAATTCTAA 59.777 37.037 0.00 0.00 36.40 2.10
3218 6314 4.870426 AGCGTAAATGACCAATCTGTACAG 59.130 41.667 17.17 17.17 0.00 2.74
3238 6357 2.153680 CCGATCAAAACGGTTAAGCG 57.846 50.000 24.36 24.36 44.57 4.68
3247 6366 5.527582 ACTGTATGCCTTATCCGATCAAAAC 59.472 40.000 0.00 0.00 0.00 2.43
3277 6398 1.078656 AGGTATGGGGTTTTGGCACAT 59.921 47.619 0.00 0.00 39.30 3.21
3279 6400 0.894835 CAGGTATGGGGTTTTGGCAC 59.105 55.000 0.00 0.00 0.00 5.01
3337 6458 7.280356 AGAAAGTGGGTACGAAGCATTATTAT 58.720 34.615 0.00 0.00 0.00 1.28
3338 6459 6.646267 AGAAAGTGGGTACGAAGCATTATTA 58.354 36.000 0.00 0.00 0.00 0.98
3339 6460 5.497474 AGAAAGTGGGTACGAAGCATTATT 58.503 37.500 0.00 0.00 0.00 1.40
3385 6506 4.652421 TTGAGCACATTGTGTTTCACAT 57.348 36.364 17.64 0.00 44.16 3.21
3387 6508 4.266029 CACTTTGAGCACATTGTGTTTCAC 59.734 41.667 17.64 1.77 35.75 3.18
3403 6524 6.939730 TGTTCTCTATTTGGTATGCACTTTGA 59.060 34.615 0.00 0.00 0.00 2.69
3404 6525 7.144722 TGTTCTCTATTTGGTATGCACTTTG 57.855 36.000 0.00 0.00 0.00 2.77
3405 6526 7.944729 ATGTTCTCTATTTGGTATGCACTTT 57.055 32.000 0.00 0.00 0.00 2.66
3417 6538 9.809096 CCGATAGCATATGTATGTTCTCTATTT 57.191 33.333 4.29 0.00 36.11 1.40
3441 6562 6.083630 CCATTAACAACAACAGATGTAACCG 58.916 40.000 0.00 0.00 42.99 4.44
3442 6563 6.861055 CACCATTAACAACAACAGATGTAACC 59.139 38.462 0.00 0.00 42.99 2.85
3464 6586 2.749621 CTCAGAACAAACCATAGGCACC 59.250 50.000 0.00 0.00 0.00 5.01
3490 6612 2.917713 AACCATAGGCACCATTTGGA 57.082 45.000 3.01 0.00 38.94 3.53
3518 6640 0.969917 TGTTGTTGTTGCACCTGGCT 60.970 50.000 0.00 0.00 45.15 4.75
3530 6652 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3542 6664 5.914085 TCCAGTTTTTGTTGTTGTTGTTG 57.086 34.783 0.00 0.00 0.00 3.33
3590 6715 7.649705 ACAGCTGATATAGTTAACATCGACAAG 59.350 37.037 23.35 0.00 0.00 3.16
3591 6716 7.489160 ACAGCTGATATAGTTAACATCGACAA 58.511 34.615 23.35 0.00 0.00 3.18
3592 6717 7.039313 ACAGCTGATATAGTTAACATCGACA 57.961 36.000 23.35 2.00 0.00 4.35
3636 6761 4.044065 TCCTTTTGTCTATGGTGGGACAAT 59.956 41.667 8.91 0.00 46.98 2.71
3681 6808 3.752747 GGAATCAATTGCCTTTTTGGTGG 59.247 43.478 0.00 0.00 38.35 4.61
4026 7153 4.404394 TCAGGAACAGACTAACAACTGACA 59.596 41.667 0.00 0.00 37.54 3.58
4167 7294 5.056480 TGGTGATAACACTTGACAGTTCAG 58.944 41.667 2.93 0.00 45.32 3.02
4345 7472 7.929941 ACAAGATTGAAAAATCTCCTCCTAC 57.070 36.000 0.00 0.00 38.49 3.18
4552 7762 9.733219 ACGAAACTTAATTTGAATTTTCGGTTA 57.267 25.926 20.74 0.00 46.88 2.85
4748 7961 2.617215 CCCTAACCCCCAAGCCCT 60.617 66.667 0.00 0.00 0.00 5.19
4752 7965 0.849540 AACCCTCCCTAACCCCCAAG 60.850 60.000 0.00 0.00 0.00 3.61
4753 7966 1.143970 CAACCCTCCCTAACCCCCAA 61.144 60.000 0.00 0.00 0.00 4.12
4755 7968 1.230050 TCAACCCTCCCTAACCCCC 60.230 63.158 0.00 0.00 0.00 5.40
4756 7969 1.279749 CCTCAACCCTCCCTAACCCC 61.280 65.000 0.00 0.00 0.00 4.95
4760 7973 2.143231 AAACCCTCAACCCTCCCTAA 57.857 50.000 0.00 0.00 0.00 2.69
4762 7975 1.709115 GTTAAACCCTCAACCCTCCCT 59.291 52.381 0.00 0.00 0.00 4.20
4763 7976 1.709115 AGTTAAACCCTCAACCCTCCC 59.291 52.381 0.00 0.00 0.00 4.30
4764 7977 3.520691 AAGTTAAACCCTCAACCCTCC 57.479 47.619 0.00 0.00 0.00 4.30
4765 7978 6.066690 ACTAAAAGTTAAACCCTCAACCCTC 58.933 40.000 0.00 0.00 0.00 4.30
4891 8105 1.305201 TGACGAGGGCTTTGAAACAC 58.695 50.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.