Multiple sequence alignment - TraesCS5D01G154100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G154100 chr5D 100.000 2339 0 0 1 2339 242377482 242379820 0.000000e+00 4320.0
1 TraesCS5D01G154100 chr4B 89.883 1364 116 9 6 1347 358896284 358894921 0.000000e+00 1735.0
2 TraesCS5D01G154100 chr4B 88.580 648 66 7 1696 2339 183488044 183487401 0.000000e+00 780.0
3 TraesCS5D01G154100 chr4B 85.984 635 88 1 1700 2333 292399567 292400201 0.000000e+00 678.0
4 TraesCS5D01G154100 chr2A 86.507 1297 145 14 1 1268 271915042 271913747 0.000000e+00 1399.0
5 TraesCS5D01G154100 chr2A 80.679 766 126 9 5 749 728087387 728086623 2.020000e-160 575.0
6 TraesCS5D01G154100 chr2A 87.692 455 52 4 1886 2339 483597846 483597395 5.720000e-146 527.0
7 TraesCS5D01G154100 chr2D 87.411 1128 109 13 167 1268 226527400 226528520 0.000000e+00 1266.0
8 TraesCS5D01G154100 chr6B 83.165 1384 209 13 1 1362 330983899 330982518 0.000000e+00 1243.0
9 TraesCS5D01G154100 chr6B 86.003 643 58 14 1703 2339 270895425 270894809 0.000000e+00 660.0
10 TraesCS5D01G154100 chr6B 91.711 374 29 2 7 379 154689377 154689005 3.450000e-143 518.0
11 TraesCS5D01G154100 chr6B 82.639 144 25 0 1203 1346 712487015 712487158 6.780000e-26 128.0
12 TraesCS5D01G154100 chr3D 82.476 1381 216 14 5 1363 177015460 177014084 0.000000e+00 1186.0
13 TraesCS5D01G154100 chr3D 80.103 1357 243 9 10 1344 339845399 339844048 0.000000e+00 985.0
14 TraesCS5D01G154100 chr3D 81.157 1141 193 15 239 1364 90829293 90830426 0.000000e+00 896.0
15 TraesCS5D01G154100 chr6D 82.027 1391 227 13 5 1373 462399764 462398375 0.000000e+00 1162.0
16 TraesCS5D01G154100 chr6D 81.680 1381 226 16 5 1363 452072063 452070688 0.000000e+00 1123.0
17 TraesCS5D01G154100 chr1D 82.114 1381 222 15 5 1363 356880578 356881955 0.000000e+00 1158.0
18 TraesCS5D01G154100 chr1D 81.877 1385 228 13 5 1368 176360132 176361514 0.000000e+00 1146.0
19 TraesCS5D01G154100 chr1D 79.623 1379 254 15 10 1363 286395876 286397252 0.000000e+00 965.0
20 TraesCS5D01G154100 chr1B 89.425 643 62 5 1700 2339 81682383 81681744 0.000000e+00 806.0
21 TraesCS5D01G154100 chr1A 81.531 980 134 13 36 997 439093511 439094461 0.000000e+00 763.0
22 TraesCS5D01G154100 chr1A 85.803 641 89 2 1700 2339 177829388 177828749 0.000000e+00 678.0
23 TraesCS5D01G154100 chr1A 85.226 643 80 7 1700 2339 491765017 491765647 0.000000e+00 647.0
24 TraesCS5D01G154100 chr1A 81.290 155 20 7 1546 1697 177813937 177814085 1.470000e-22 117.0
25 TraesCS5D01G154100 chr1A 80.153 131 17 7 1573 1700 234552894 234552770 3.200000e-14 89.8
26 TraesCS5D01G154100 chr7B 86.862 647 74 7 1700 2339 20961814 20962456 0.000000e+00 713.0
27 TraesCS5D01G154100 chr4D 85.226 643 87 6 1700 2339 311273758 311274395 0.000000e+00 654.0
28 TraesCS5D01G154100 chr3B 83.537 656 100 6 1690 2339 525591986 525591333 7.150000e-170 606.0
29 TraesCS5D01G154100 chr3B 80.122 654 115 12 1697 2339 289688234 289688883 7.560000e-130 473.0
30 TraesCS5D01G154100 chr5B 93.134 335 21 2 1365 1699 256278566 256278234 7.510000e-135 490.0
31 TraesCS5D01G154100 chr5B 91.343 335 20 2 1365 1699 259578298 259578623 1.270000e-122 449.0
32 TraesCS5D01G154100 chr5A 94.118 323 16 2 1365 1687 310706609 310706290 2.700000e-134 488.0
33 TraesCS5D01G154100 chr5A 83.007 153 23 3 1546 1697 324015634 324015484 4.050000e-28 135.0
34 TraesCS5D01G154100 chr5A 82.468 154 22 5 1546 1697 324042875 324042725 1.890000e-26 130.0
35 TraesCS5D01G154100 chr7A 77.455 275 41 14 1436 1696 314077415 314077682 6.740000e-31 145.0
36 TraesCS5D01G154100 chr2B 83.974 156 20 5 1546 1700 430834900 430834749 6.740000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G154100 chr5D 242377482 242379820 2338 False 4320 4320 100.000 1 2339 1 chr5D.!!$F1 2338
1 TraesCS5D01G154100 chr4B 358894921 358896284 1363 True 1735 1735 89.883 6 1347 1 chr4B.!!$R2 1341
2 TraesCS5D01G154100 chr4B 183487401 183488044 643 True 780 780 88.580 1696 2339 1 chr4B.!!$R1 643
3 TraesCS5D01G154100 chr4B 292399567 292400201 634 False 678 678 85.984 1700 2333 1 chr4B.!!$F1 633
4 TraesCS5D01G154100 chr2A 271913747 271915042 1295 True 1399 1399 86.507 1 1268 1 chr2A.!!$R1 1267
5 TraesCS5D01G154100 chr2A 728086623 728087387 764 True 575 575 80.679 5 749 1 chr2A.!!$R3 744
6 TraesCS5D01G154100 chr2D 226527400 226528520 1120 False 1266 1266 87.411 167 1268 1 chr2D.!!$F1 1101
7 TraesCS5D01G154100 chr6B 330982518 330983899 1381 True 1243 1243 83.165 1 1362 1 chr6B.!!$R3 1361
8 TraesCS5D01G154100 chr6B 270894809 270895425 616 True 660 660 86.003 1703 2339 1 chr6B.!!$R2 636
9 TraesCS5D01G154100 chr3D 177014084 177015460 1376 True 1186 1186 82.476 5 1363 1 chr3D.!!$R1 1358
10 TraesCS5D01G154100 chr3D 339844048 339845399 1351 True 985 985 80.103 10 1344 1 chr3D.!!$R2 1334
11 TraesCS5D01G154100 chr3D 90829293 90830426 1133 False 896 896 81.157 239 1364 1 chr3D.!!$F1 1125
12 TraesCS5D01G154100 chr6D 462398375 462399764 1389 True 1162 1162 82.027 5 1373 1 chr6D.!!$R2 1368
13 TraesCS5D01G154100 chr6D 452070688 452072063 1375 True 1123 1123 81.680 5 1363 1 chr6D.!!$R1 1358
14 TraesCS5D01G154100 chr1D 356880578 356881955 1377 False 1158 1158 82.114 5 1363 1 chr1D.!!$F3 1358
15 TraesCS5D01G154100 chr1D 176360132 176361514 1382 False 1146 1146 81.877 5 1368 1 chr1D.!!$F1 1363
16 TraesCS5D01G154100 chr1D 286395876 286397252 1376 False 965 965 79.623 10 1363 1 chr1D.!!$F2 1353
17 TraesCS5D01G154100 chr1B 81681744 81682383 639 True 806 806 89.425 1700 2339 1 chr1B.!!$R1 639
18 TraesCS5D01G154100 chr1A 439093511 439094461 950 False 763 763 81.531 36 997 1 chr1A.!!$F2 961
19 TraesCS5D01G154100 chr1A 177828749 177829388 639 True 678 678 85.803 1700 2339 1 chr1A.!!$R1 639
20 TraesCS5D01G154100 chr1A 491765017 491765647 630 False 647 647 85.226 1700 2339 1 chr1A.!!$F3 639
21 TraesCS5D01G154100 chr7B 20961814 20962456 642 False 713 713 86.862 1700 2339 1 chr7B.!!$F1 639
22 TraesCS5D01G154100 chr4D 311273758 311274395 637 False 654 654 85.226 1700 2339 1 chr4D.!!$F1 639
23 TraesCS5D01G154100 chr3B 525591333 525591986 653 True 606 606 83.537 1690 2339 1 chr3B.!!$R1 649
24 TraesCS5D01G154100 chr3B 289688234 289688883 649 False 473 473 80.122 1697 2339 1 chr3B.!!$F1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 380 0.392461 ATGGAATGGGACGAACCACG 60.392 55.0 5.04 0.0 44.72 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1957 0.031585 TGCGAGCACAAACGAGTAGT 59.968 50.0 0.0 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 187 8.083828 AGATCTCATTAGACAAACTATGTGGT 57.916 34.615 0.00 0.00 44.12 4.16
235 254 8.410912 CAATTCCAATCTCACAATATGACATGT 58.589 33.333 0.00 0.00 32.37 3.21
238 257 7.111466 TCCAATCTCACAATATGACATGTCAA 58.889 34.615 31.00 20.03 43.58 3.18
260 279 9.971922 GTCAAATTTTATTGCTTGGAGCTATAT 57.028 29.630 5.23 0.00 42.97 0.86
360 380 0.392461 ATGGAATGGGACGAACCACG 60.392 55.000 5.04 0.00 44.72 4.94
370 390 2.535588 CGAACCACGGTAAACCCTG 58.464 57.895 0.00 0.00 38.46 4.45
406 427 2.280628 GGAAGTTATCTTGCCCGACAG 58.719 52.381 0.00 0.00 36.28 3.51
411 432 2.672961 TATCTTGCCCGACAGAAGTG 57.327 50.000 0.00 0.00 0.00 3.16
495 534 3.470709 CATTTGTCCTACATGCTCGGAT 58.529 45.455 0.00 0.00 0.00 4.18
551 590 5.818678 TGTAGAAAAGCAAAGGAGGTCTA 57.181 39.130 0.00 0.00 0.00 2.59
575 614 2.736670 AGGCTTGGGTTGGATGATAC 57.263 50.000 0.00 0.00 0.00 2.24
595 634 7.282585 TGATACTATTGATAAAGCCTGCAAGT 58.717 34.615 0.00 0.00 0.00 3.16
631 670 5.099042 AGAAGCGGTGTTGGAGTATTTAT 57.901 39.130 0.00 0.00 0.00 1.40
679 718 6.805016 TGATTTTGGGCCATTACAATGTAT 57.195 33.333 7.26 0.00 34.60 2.29
681 720 6.382282 TGATTTTGGGCCATTACAATGTATGA 59.618 34.615 7.26 0.00 34.60 2.15
722 761 4.167892 AGCATGGTATCTATGGTGGGAAAA 59.832 41.667 0.00 0.00 35.18 2.29
752 792 0.521242 GTGCATAAGAAGGCAACGCG 60.521 55.000 3.53 3.53 45.27 6.01
803 843 6.024552 TCTTTCCCTTTCATCAATTTTCGG 57.975 37.500 0.00 0.00 0.00 4.30
806 846 6.509418 TTCCCTTTCATCAATTTTCGGTAG 57.491 37.500 0.00 0.00 0.00 3.18
836 876 2.091111 CCCCCAGGGCTTCTATGAAAAT 60.091 50.000 0.00 0.00 35.35 1.82
866 908 0.400525 TCCTGTCCTCCCATGGGATC 60.401 60.000 33.89 24.57 44.24 3.36
890 932 5.270083 TGTGAAACTTAATGTTGACGCTTG 58.730 37.500 0.00 0.00 39.13 4.01
895 937 7.329717 TGAAACTTAATGTTGACGCTTGTTTTT 59.670 29.630 0.00 0.00 39.13 1.94
976 1020 2.196319 GCAGGAGGCAATGGGAAAG 58.804 57.895 0.00 0.00 43.97 2.62
977 1021 1.953231 GCAGGAGGCAATGGGAAAGC 61.953 60.000 0.00 0.00 43.97 3.51
978 1022 0.612732 CAGGAGGCAATGGGAAAGCA 60.613 55.000 0.00 0.00 0.00 3.91
1041 1085 3.572255 TCAAATTTGGTCTAACACTGGCC 59.428 43.478 17.90 0.00 0.00 5.36
1076 1120 8.788325 GGATGTAATCGCCTTATTATTAACCT 57.212 34.615 0.00 0.00 46.86 3.50
1096 1144 3.455910 CCTGGACAATCTGGAGGTGATTA 59.544 47.826 0.00 0.00 33.38 1.75
1111 1159 5.754782 AGGTGATTAATACCATGCAGAACA 58.245 37.500 13.30 0.00 40.74 3.18
1159 1208 6.420604 AGCGACAATTTTCGATGATTGTTTTT 59.579 30.769 17.74 11.17 44.17 1.94
1293 1342 5.649782 TTGAGGAGCCTTCAAATGAAATC 57.350 39.130 0.00 0.00 33.07 2.17
1294 1343 4.665451 TGAGGAGCCTTCAAATGAAATCA 58.335 39.130 0.00 0.00 33.07 2.57
1308 1357 8.606602 TCAAATGAAATCATAATGACTCTCACG 58.393 33.333 0.00 0.00 35.10 4.35
1331 1380 5.913514 CGGACGATGTACTGGTTATTTCTAG 59.086 44.000 0.00 0.00 0.00 2.43
1383 1432 2.874014 TGGTTGTCAAAGCATGGATGA 58.126 42.857 0.00 0.00 38.83 2.92
1384 1433 3.229293 TGGTTGTCAAAGCATGGATGAA 58.771 40.909 0.00 0.00 38.83 2.57
1385 1434 3.256383 TGGTTGTCAAAGCATGGATGAAG 59.744 43.478 0.00 0.00 38.83 3.02
1386 1435 3.507233 GGTTGTCAAAGCATGGATGAAGA 59.493 43.478 0.00 0.00 33.85 2.87
1387 1436 4.022068 GGTTGTCAAAGCATGGATGAAGAA 60.022 41.667 0.00 0.00 33.85 2.52
1388 1437 4.771590 TGTCAAAGCATGGATGAAGAAC 57.228 40.909 0.00 0.00 0.00 3.01
1389 1438 4.401022 TGTCAAAGCATGGATGAAGAACT 58.599 39.130 0.00 0.00 0.00 3.01
1390 1439 5.559770 TGTCAAAGCATGGATGAAGAACTA 58.440 37.500 0.00 0.00 0.00 2.24
1391 1440 5.645067 TGTCAAAGCATGGATGAAGAACTAG 59.355 40.000 0.00 0.00 0.00 2.57
1392 1441 5.877012 GTCAAAGCATGGATGAAGAACTAGA 59.123 40.000 0.00 0.00 0.00 2.43
1393 1442 6.036953 GTCAAAGCATGGATGAAGAACTAGAG 59.963 42.308 0.00 0.00 0.00 2.43
1394 1443 5.946942 AAGCATGGATGAAGAACTAGAGA 57.053 39.130 0.00 0.00 0.00 3.10
1395 1444 5.534207 AGCATGGATGAAGAACTAGAGAG 57.466 43.478 0.00 0.00 0.00 3.20
1396 1445 5.207354 AGCATGGATGAAGAACTAGAGAGA 58.793 41.667 0.00 0.00 0.00 3.10
1397 1446 5.840149 AGCATGGATGAAGAACTAGAGAGAT 59.160 40.000 0.00 0.00 0.00 2.75
1398 1447 6.015180 AGCATGGATGAAGAACTAGAGAGATC 60.015 42.308 0.00 0.00 0.00 2.75
1399 1448 6.015180 GCATGGATGAAGAACTAGAGAGATCT 60.015 42.308 0.00 0.00 36.43 2.75
1400 1449 7.471819 GCATGGATGAAGAACTAGAGAGATCTT 60.472 40.741 0.00 0.00 44.91 2.40
1401 1450 7.969690 TGGATGAAGAACTAGAGAGATCTTT 57.030 36.000 0.00 0.00 42.95 2.52
1402 1451 7.780064 TGGATGAAGAACTAGAGAGATCTTTG 58.220 38.462 0.00 0.00 42.95 2.77
1403 1452 6.701400 GGATGAAGAACTAGAGAGATCTTTGC 59.299 42.308 0.00 0.00 42.95 3.68
1404 1453 6.849085 TGAAGAACTAGAGAGATCTTTGCT 57.151 37.500 0.00 0.00 42.95 3.91
1405 1454 6.862209 TGAAGAACTAGAGAGATCTTTGCTC 58.138 40.000 0.00 0.00 42.95 4.26
1406 1455 5.852282 AGAACTAGAGAGATCTTTGCTCC 57.148 43.478 0.00 0.00 31.02 4.70
1407 1456 5.518865 AGAACTAGAGAGATCTTTGCTCCT 58.481 41.667 0.00 0.00 31.02 3.69
1408 1457 5.957774 AGAACTAGAGAGATCTTTGCTCCTT 59.042 40.000 0.00 0.00 31.02 3.36
1409 1458 6.440328 AGAACTAGAGAGATCTTTGCTCCTTT 59.560 38.462 0.00 0.00 31.02 3.11
1410 1459 7.617723 AGAACTAGAGAGATCTTTGCTCCTTTA 59.382 37.037 0.00 0.00 31.02 1.85
1411 1460 7.107639 ACTAGAGAGATCTTTGCTCCTTTAC 57.892 40.000 0.00 0.00 32.82 2.01
1412 1461 5.351948 AGAGAGATCTTTGCTCCTTTACC 57.648 43.478 0.00 0.00 32.82 2.85
1413 1462 4.163268 AGAGAGATCTTTGCTCCTTTACCC 59.837 45.833 0.00 0.00 32.82 3.69
1414 1463 3.201045 AGAGATCTTTGCTCCTTTACCCC 59.799 47.826 0.00 0.00 32.82 4.95
1415 1464 2.242452 AGATCTTTGCTCCTTTACCCCC 59.758 50.000 0.00 0.00 0.00 5.40
1435 1484 2.280079 CCCCCATCTTTGGAGGCC 59.720 66.667 0.00 0.00 46.92 5.19
1436 1485 2.625460 CCCCCATCTTTGGAGGCCA 61.625 63.158 5.01 0.00 46.92 5.36
1437 1486 1.387737 CCCCATCTTTGGAGGCCAA 59.612 57.895 5.01 0.00 46.92 4.52
1438 1487 0.685458 CCCCATCTTTGGAGGCCAAG 60.685 60.000 5.01 0.00 46.92 3.61
1439 1488 0.332632 CCCATCTTTGGAGGCCAAGA 59.667 55.000 5.01 5.47 46.92 3.02
1440 1489 1.467920 CCATCTTTGGAGGCCAAGAC 58.532 55.000 5.01 0.00 46.92 3.01
1441 1490 1.467920 CATCTTTGGAGGCCAAGACC 58.532 55.000 5.01 3.18 44.84 3.85
1442 1491 1.005215 CATCTTTGGAGGCCAAGACCT 59.995 52.381 5.01 0.00 44.84 3.85
1457 1506 5.573337 CAAGACCTCCATTGGAAAAGATC 57.427 43.478 6.88 0.73 0.00 2.75
1470 1519 5.982890 GGAAAAGATCCCAAGTGAATTCA 57.017 39.130 3.38 3.38 43.00 2.57
1471 1520 6.345096 GGAAAAGATCCCAAGTGAATTCAA 57.655 37.500 10.35 0.00 43.00 2.69
1472 1521 6.393171 GGAAAAGATCCCAAGTGAATTCAAG 58.607 40.000 10.35 3.33 43.00 3.02
1473 1522 6.209391 GGAAAAGATCCCAAGTGAATTCAAGA 59.791 38.462 10.35 3.01 43.00 3.02
1474 1523 6.581171 AAAGATCCCAAGTGAATTCAAGAC 57.419 37.500 10.35 0.00 0.00 3.01
1475 1524 4.593956 AGATCCCAAGTGAATTCAAGACC 58.406 43.478 10.35 0.00 0.00 3.85
1476 1525 3.154827 TCCCAAGTGAATTCAAGACCC 57.845 47.619 10.35 0.00 0.00 4.46
1477 1526 2.716424 TCCCAAGTGAATTCAAGACCCT 59.284 45.455 10.35 0.00 0.00 4.34
1478 1527 3.084786 CCCAAGTGAATTCAAGACCCTC 58.915 50.000 10.35 0.00 0.00 4.30
1479 1528 3.498481 CCCAAGTGAATTCAAGACCCTCA 60.498 47.826 10.35 0.00 0.00 3.86
1480 1529 3.503748 CCAAGTGAATTCAAGACCCTCAC 59.496 47.826 10.35 0.00 37.30 3.51
1481 1530 4.136796 CAAGTGAATTCAAGACCCTCACA 58.863 43.478 10.35 0.00 39.08 3.58
1482 1531 4.437682 AGTGAATTCAAGACCCTCACAA 57.562 40.909 10.35 0.00 39.08 3.33
1483 1532 4.392940 AGTGAATTCAAGACCCTCACAAG 58.607 43.478 10.35 0.00 39.08 3.16
1484 1533 3.503748 GTGAATTCAAGACCCTCACAAGG 59.496 47.826 10.35 0.00 42.95 3.61
1493 1542 3.768633 CCTCACAAGGGAAGATCCG 57.231 57.895 0.00 0.00 39.21 4.18
1494 1543 0.462759 CCTCACAAGGGAAGATCCGC 60.463 60.000 0.00 0.00 39.21 5.54
1495 1544 0.462759 CTCACAAGGGAAGATCCGCC 60.463 60.000 0.00 0.00 37.43 6.13
1496 1545 1.198094 TCACAAGGGAAGATCCGCCA 61.198 55.000 4.08 0.00 37.43 5.69
1497 1546 0.107017 CACAAGGGAAGATCCGCCAT 60.107 55.000 4.08 0.00 37.43 4.40
1498 1547 0.107017 ACAAGGGAAGATCCGCCATG 60.107 55.000 4.08 4.87 37.43 3.66
1499 1548 0.820891 CAAGGGAAGATCCGCCATGG 60.821 60.000 7.63 7.63 37.43 3.66
1507 1556 4.240881 TCCGCCATGGATTCAAGC 57.759 55.556 18.40 0.00 43.74 4.01
1508 1557 1.453745 TCCGCCATGGATTCAAGCC 60.454 57.895 18.40 0.00 43.74 4.35
1509 1558 2.492773 CCGCCATGGATTCAAGCCC 61.493 63.158 18.40 0.00 42.00 5.19
1510 1559 2.492773 CGCCATGGATTCAAGCCCC 61.493 63.158 18.40 0.00 0.00 5.80
1511 1560 1.075748 GCCATGGATTCAAGCCCCT 60.076 57.895 18.40 0.00 0.00 4.79
1512 1561 0.185901 GCCATGGATTCAAGCCCCTA 59.814 55.000 18.40 0.00 0.00 3.53
1513 1562 1.203100 GCCATGGATTCAAGCCCCTAT 60.203 52.381 18.40 0.00 0.00 2.57
1514 1563 2.800250 CCATGGATTCAAGCCCCTATC 58.200 52.381 5.56 0.00 0.00 2.08
1515 1564 2.377869 CCATGGATTCAAGCCCCTATCT 59.622 50.000 5.56 0.00 0.00 1.98
1516 1565 3.560882 CCATGGATTCAAGCCCCTATCTC 60.561 52.174 5.56 0.00 0.00 2.75
1517 1566 3.066208 TGGATTCAAGCCCCTATCTCT 57.934 47.619 0.00 0.00 0.00 3.10
1518 1567 2.975489 TGGATTCAAGCCCCTATCTCTC 59.025 50.000 0.00 0.00 0.00 3.20
1519 1568 2.304470 GGATTCAAGCCCCTATCTCTCC 59.696 54.545 0.00 0.00 0.00 3.71
1520 1569 2.877154 TTCAAGCCCCTATCTCTCCT 57.123 50.000 0.00 0.00 0.00 3.69
1521 1570 3.993658 TTCAAGCCCCTATCTCTCCTA 57.006 47.619 0.00 0.00 0.00 2.94
1522 1571 3.534357 TCAAGCCCCTATCTCTCCTAG 57.466 52.381 0.00 0.00 0.00 3.02
1523 1572 3.064412 TCAAGCCCCTATCTCTCCTAGA 58.936 50.000 0.00 0.00 39.02 2.43
1524 1573 3.075283 TCAAGCCCCTATCTCTCCTAGAG 59.925 52.174 0.00 0.00 43.64 2.43
1538 1587 7.878495 TCTCTCCTAGAGATTTAGGAAGAACT 58.122 38.462 2.50 0.00 45.77 3.01
1539 1588 9.005318 TCTCTCCTAGAGATTTAGGAAGAACTA 57.995 37.037 2.50 0.00 45.77 2.24
1540 1589 9.807921 CTCTCCTAGAGATTTAGGAAGAACTAT 57.192 37.037 0.00 0.00 46.46 2.12
1541 1590 9.802039 TCTCCTAGAGATTTAGGAAGAACTATC 57.198 37.037 3.61 0.00 46.46 2.08
1542 1591 9.807921 CTCCTAGAGATTTAGGAAGAACTATCT 57.192 37.037 3.61 0.00 46.46 1.98
1547 1596 9.890915 AGAGATTTAGGAAGAACTATCTACCAT 57.109 33.333 0.00 0.00 33.77 3.55
1549 1598 9.661954 AGATTTAGGAAGAACTATCTACCATCA 57.338 33.333 0.00 0.00 33.77 3.07
1552 1601 9.488762 TTTAGGAAGAACTATCTACCATCAAGA 57.511 33.333 0.00 0.00 33.77 3.02
1553 1602 7.354751 AGGAAGAACTATCTACCATCAAGAC 57.645 40.000 0.00 0.00 33.77 3.01
1554 1603 6.325286 AGGAAGAACTATCTACCATCAAGACC 59.675 42.308 0.00 0.00 33.77 3.85
1555 1604 6.463190 GGAAGAACTATCTACCATCAAGACCC 60.463 46.154 0.00 0.00 33.77 4.46
1556 1605 4.902448 AGAACTATCTACCATCAAGACCCC 59.098 45.833 0.00 0.00 32.88 4.95
1557 1606 4.280789 ACTATCTACCATCAAGACCCCA 57.719 45.455 0.00 0.00 0.00 4.96
1558 1607 3.967987 ACTATCTACCATCAAGACCCCAC 59.032 47.826 0.00 0.00 0.00 4.61
1559 1608 2.642171 TCTACCATCAAGACCCCACT 57.358 50.000 0.00 0.00 0.00 4.00
1560 1609 2.915869 TCTACCATCAAGACCCCACTT 58.084 47.619 0.00 0.00 0.00 3.16
1561 1610 2.838202 TCTACCATCAAGACCCCACTTC 59.162 50.000 0.00 0.00 0.00 3.01
1562 1611 0.698818 ACCATCAAGACCCCACTTCC 59.301 55.000 0.00 0.00 0.00 3.46
1563 1612 0.995024 CCATCAAGACCCCACTTCCT 59.005 55.000 0.00 0.00 0.00 3.36
1564 1613 1.065126 CCATCAAGACCCCACTTCCTC 60.065 57.143 0.00 0.00 0.00 3.71
1565 1614 1.912043 CATCAAGACCCCACTTCCTCT 59.088 52.381 0.00 0.00 0.00 3.69
1566 1615 2.118403 TCAAGACCCCACTTCCTCTT 57.882 50.000 0.00 0.00 0.00 2.85
1567 1616 1.699634 TCAAGACCCCACTTCCTCTTG 59.300 52.381 0.00 0.00 40.62 3.02
1568 1617 1.068121 AAGACCCCACTTCCTCTTGG 58.932 55.000 0.00 0.00 0.00 3.61
1569 1618 0.193574 AGACCCCACTTCCTCTTGGA 59.806 55.000 0.00 0.00 41.36 3.53
1570 1619 1.203492 AGACCCCACTTCCTCTTGGAT 60.203 52.381 0.00 0.00 42.81 3.41
1571 1620 1.636003 GACCCCACTTCCTCTTGGATT 59.364 52.381 0.00 0.00 42.81 3.01
1572 1621 2.041755 GACCCCACTTCCTCTTGGATTT 59.958 50.000 0.00 0.00 42.81 2.17
1573 1622 2.225117 ACCCCACTTCCTCTTGGATTTG 60.225 50.000 0.00 0.00 42.81 2.32
1574 1623 2.450476 CCCACTTCCTCTTGGATTTGG 58.550 52.381 0.00 0.00 42.81 3.28
1575 1624 2.450476 CCACTTCCTCTTGGATTTGGG 58.550 52.381 0.00 0.00 42.81 4.12
1576 1625 2.041620 CCACTTCCTCTTGGATTTGGGA 59.958 50.000 0.00 0.00 42.81 4.37
1577 1626 3.309410 CCACTTCCTCTTGGATTTGGGAT 60.309 47.826 0.00 0.00 42.81 3.85
1578 1627 3.698040 CACTTCCTCTTGGATTTGGGATG 59.302 47.826 0.00 0.00 42.81 3.51
1579 1628 3.593328 ACTTCCTCTTGGATTTGGGATGA 59.407 43.478 0.00 0.00 42.81 2.92
1580 1629 4.044571 ACTTCCTCTTGGATTTGGGATGAA 59.955 41.667 0.00 0.00 42.81 2.57
1581 1630 3.968265 TCCTCTTGGATTTGGGATGAAC 58.032 45.455 0.00 0.00 37.46 3.18
1582 1631 3.593328 TCCTCTTGGATTTGGGATGAACT 59.407 43.478 0.00 0.00 37.46 3.01
1583 1632 4.044571 TCCTCTTGGATTTGGGATGAACTT 59.955 41.667 0.00 0.00 37.46 2.66
1584 1633 4.774200 CCTCTTGGATTTGGGATGAACTTT 59.226 41.667 0.00 0.00 34.57 2.66
1585 1634 5.951747 CCTCTTGGATTTGGGATGAACTTTA 59.048 40.000 0.00 0.00 34.57 1.85
1586 1635 6.127619 CCTCTTGGATTTGGGATGAACTTTAC 60.128 42.308 0.00 0.00 34.57 2.01
1587 1636 5.714806 TCTTGGATTTGGGATGAACTTTACC 59.285 40.000 0.00 0.00 0.00 2.85
1588 1637 5.269554 TGGATTTGGGATGAACTTTACCT 57.730 39.130 0.00 0.00 0.00 3.08
1589 1638 5.650283 TGGATTTGGGATGAACTTTACCTT 58.350 37.500 0.00 0.00 0.00 3.50
1590 1639 5.480073 TGGATTTGGGATGAACTTTACCTTG 59.520 40.000 0.00 0.00 0.00 3.61
1591 1640 5.480422 GGATTTGGGATGAACTTTACCTTGT 59.520 40.000 0.00 0.00 0.00 3.16
1592 1641 6.014584 GGATTTGGGATGAACTTTACCTTGTT 60.015 38.462 0.00 0.00 0.00 2.83
1593 1642 6.399639 TTTGGGATGAACTTTACCTTGTTC 57.600 37.500 0.00 0.00 41.87 3.18
1594 1643 4.403734 TGGGATGAACTTTACCTTGTTCC 58.596 43.478 0.00 0.00 41.10 3.62
1595 1644 4.105697 TGGGATGAACTTTACCTTGTTCCT 59.894 41.667 0.00 0.00 41.10 3.36
1596 1645 4.700692 GGGATGAACTTTACCTTGTTCCTC 59.299 45.833 0.00 0.00 41.10 3.71
1597 1646 5.515008 GGGATGAACTTTACCTTGTTCCTCT 60.515 44.000 0.00 0.00 41.10 3.69
1598 1647 6.004574 GGATGAACTTTACCTTGTTCCTCTT 58.995 40.000 0.00 0.00 41.10 2.85
1599 1648 6.490381 GGATGAACTTTACCTTGTTCCTCTTT 59.510 38.462 0.00 0.00 41.10 2.52
1600 1649 7.014326 GGATGAACTTTACCTTGTTCCTCTTTT 59.986 37.037 0.00 0.00 41.10 2.27
1601 1650 7.329588 TGAACTTTACCTTGTTCCTCTTTTC 57.670 36.000 0.00 0.00 41.10 2.29
1602 1651 7.116736 TGAACTTTACCTTGTTCCTCTTTTCT 58.883 34.615 0.00 0.00 41.10 2.52
1603 1652 7.282450 TGAACTTTACCTTGTTCCTCTTTTCTC 59.718 37.037 0.00 0.00 41.10 2.87
1604 1653 6.901300 ACTTTACCTTGTTCCTCTTTTCTCT 58.099 36.000 0.00 0.00 0.00 3.10
1605 1654 7.347252 ACTTTACCTTGTTCCTCTTTTCTCTT 58.653 34.615 0.00 0.00 0.00 2.85
1606 1655 7.283354 ACTTTACCTTGTTCCTCTTTTCTCTTG 59.717 37.037 0.00 0.00 0.00 3.02
1607 1656 4.464947 ACCTTGTTCCTCTTTTCTCTTGG 58.535 43.478 0.00 0.00 0.00 3.61
1608 1657 4.166144 ACCTTGTTCCTCTTTTCTCTTGGA 59.834 41.667 0.00 0.00 0.00 3.53
1609 1658 5.163045 ACCTTGTTCCTCTTTTCTCTTGGAT 60.163 40.000 0.00 0.00 0.00 3.41
1610 1659 5.772169 CCTTGTTCCTCTTTTCTCTTGGATT 59.228 40.000 0.00 0.00 0.00 3.01
1611 1660 6.294397 CCTTGTTCCTCTTTTCTCTTGGATTG 60.294 42.308 0.00 0.00 0.00 2.67
1612 1661 5.694995 TGTTCCTCTTTTCTCTTGGATTGT 58.305 37.500 0.00 0.00 0.00 2.71
1613 1662 6.129179 TGTTCCTCTTTTCTCTTGGATTGTT 58.871 36.000 0.00 0.00 0.00 2.83
1614 1663 6.607198 TGTTCCTCTTTTCTCTTGGATTGTTT 59.393 34.615 0.00 0.00 0.00 2.83
1615 1664 6.639632 TCCTCTTTTCTCTTGGATTGTTTG 57.360 37.500 0.00 0.00 0.00 2.93
1616 1665 6.129179 TCCTCTTTTCTCTTGGATTGTTTGT 58.871 36.000 0.00 0.00 0.00 2.83
1617 1666 6.039717 TCCTCTTTTCTCTTGGATTGTTTGTG 59.960 38.462 0.00 0.00 0.00 3.33
1618 1667 6.183360 CCTCTTTTCTCTTGGATTGTTTGTGT 60.183 38.462 0.00 0.00 0.00 3.72
1619 1668 7.013274 CCTCTTTTCTCTTGGATTGTTTGTGTA 59.987 37.037 0.00 0.00 0.00 2.90
1620 1669 8.463930 TCTTTTCTCTTGGATTGTTTGTGTAT 57.536 30.769 0.00 0.00 0.00 2.29
1621 1670 8.352201 TCTTTTCTCTTGGATTGTTTGTGTATG 58.648 33.333 0.00 0.00 0.00 2.39
1622 1671 5.627499 TCTCTTGGATTGTTTGTGTATGC 57.373 39.130 0.00 0.00 0.00 3.14
1623 1672 5.316167 TCTCTTGGATTGTTTGTGTATGCT 58.684 37.500 0.00 0.00 0.00 3.79
1624 1673 5.769662 TCTCTTGGATTGTTTGTGTATGCTT 59.230 36.000 0.00 0.00 0.00 3.91
1625 1674 5.771469 TCTTGGATTGTTTGTGTATGCTTG 58.229 37.500 0.00 0.00 0.00 4.01
1626 1675 5.301551 TCTTGGATTGTTTGTGTATGCTTGT 59.698 36.000 0.00 0.00 0.00 3.16
1627 1676 4.869215 TGGATTGTTTGTGTATGCTTGTG 58.131 39.130 0.00 0.00 0.00 3.33
1628 1677 4.236935 GGATTGTTTGTGTATGCTTGTGG 58.763 43.478 0.00 0.00 0.00 4.17
1629 1678 4.022416 GGATTGTTTGTGTATGCTTGTGGA 60.022 41.667 0.00 0.00 0.00 4.02
1630 1679 4.991153 TTGTTTGTGTATGCTTGTGGAA 57.009 36.364 0.00 0.00 0.00 3.53
1631 1680 4.300189 TGTTTGTGTATGCTTGTGGAAC 57.700 40.909 0.00 0.00 37.35 3.62
1632 1681 3.951037 TGTTTGTGTATGCTTGTGGAACT 59.049 39.130 0.00 0.00 38.04 3.01
1633 1682 4.036262 TGTTTGTGTATGCTTGTGGAACTC 59.964 41.667 0.00 0.00 38.04 3.01
1634 1683 3.483808 TGTGTATGCTTGTGGAACTCA 57.516 42.857 0.00 0.00 38.04 3.41
1635 1684 4.019792 TGTGTATGCTTGTGGAACTCAT 57.980 40.909 0.00 0.00 38.04 2.90
1636 1685 3.752747 TGTGTATGCTTGTGGAACTCATG 59.247 43.478 0.00 0.00 38.04 3.07
1637 1686 3.753272 GTGTATGCTTGTGGAACTCATGT 59.247 43.478 0.00 0.00 38.04 3.21
1638 1687 3.752747 TGTATGCTTGTGGAACTCATGTG 59.247 43.478 0.00 0.00 38.04 3.21
1639 1688 2.346766 TGCTTGTGGAACTCATGTGT 57.653 45.000 0.00 0.00 38.04 3.72
1640 1689 2.653726 TGCTTGTGGAACTCATGTGTT 58.346 42.857 12.74 12.74 38.04 3.32
1641 1690 3.023119 TGCTTGTGGAACTCATGTGTTT 58.977 40.909 13.95 0.00 38.04 2.83
1642 1691 3.181488 TGCTTGTGGAACTCATGTGTTTG 60.181 43.478 13.95 3.51 38.04 2.93
1643 1692 3.181487 GCTTGTGGAACTCATGTGTTTGT 60.181 43.478 13.95 0.00 38.04 2.83
1644 1693 4.601019 CTTGTGGAACTCATGTGTTTGTC 58.399 43.478 13.95 8.15 38.04 3.18
1645 1694 3.884895 TGTGGAACTCATGTGTTTGTCT 58.115 40.909 13.95 0.00 38.04 3.41
1646 1695 5.029807 TGTGGAACTCATGTGTTTGTCTA 57.970 39.130 13.95 0.00 38.04 2.59
1647 1696 5.620206 TGTGGAACTCATGTGTTTGTCTAT 58.380 37.500 13.95 0.00 38.04 1.98
1648 1697 5.700832 TGTGGAACTCATGTGTTTGTCTATC 59.299 40.000 13.95 0.50 38.04 2.08
1649 1698 5.934625 GTGGAACTCATGTGTTTGTCTATCT 59.065 40.000 13.95 0.00 0.00 1.98
1650 1699 7.097192 GTGGAACTCATGTGTTTGTCTATCTA 58.903 38.462 13.95 0.00 0.00 1.98
1651 1700 7.276658 GTGGAACTCATGTGTTTGTCTATCTAG 59.723 40.741 13.95 0.00 0.00 2.43
1652 1701 7.039011 TGGAACTCATGTGTTTGTCTATCTAGT 60.039 37.037 13.95 0.00 0.00 2.57
1653 1702 7.276658 GGAACTCATGTGTTTGTCTATCTAGTG 59.723 40.741 13.95 0.00 0.00 2.74
1654 1703 6.634805 ACTCATGTGTTTGTCTATCTAGTGG 58.365 40.000 0.00 0.00 0.00 4.00
1655 1704 6.437477 ACTCATGTGTTTGTCTATCTAGTGGA 59.563 38.462 0.00 0.00 0.00 4.02
1656 1705 7.124901 ACTCATGTGTTTGTCTATCTAGTGGAT 59.875 37.037 0.00 0.00 38.38 3.41
1657 1706 7.267857 TCATGTGTTTGTCTATCTAGTGGATG 58.732 38.462 0.00 0.00 35.98 3.51
1658 1707 6.605471 TGTGTTTGTCTATCTAGTGGATGT 57.395 37.500 0.00 0.00 35.98 3.06
1659 1708 6.398095 TGTGTTTGTCTATCTAGTGGATGTG 58.602 40.000 0.00 0.00 35.98 3.21
1660 1709 6.014584 TGTGTTTGTCTATCTAGTGGATGTGT 60.015 38.462 0.00 0.00 35.98 3.72
1661 1710 6.311445 GTGTTTGTCTATCTAGTGGATGTGTG 59.689 42.308 0.00 0.00 35.98 3.82
1662 1711 6.210584 TGTTTGTCTATCTAGTGGATGTGTGA 59.789 38.462 0.00 0.00 35.98 3.58
1663 1712 7.093333 TGTTTGTCTATCTAGTGGATGTGTGAT 60.093 37.037 0.00 0.00 35.98 3.06
1664 1713 6.641169 TGTCTATCTAGTGGATGTGTGATC 57.359 41.667 0.00 0.00 35.98 2.92
1665 1714 5.239525 TGTCTATCTAGTGGATGTGTGATCG 59.760 44.000 0.00 0.00 35.98 3.69
1666 1715 4.762251 TCTATCTAGTGGATGTGTGATCGG 59.238 45.833 0.00 0.00 35.98 4.18
1667 1716 3.012934 TCTAGTGGATGTGTGATCGGA 57.987 47.619 0.00 0.00 0.00 4.55
1668 1717 2.688446 TCTAGTGGATGTGTGATCGGAC 59.312 50.000 0.00 0.00 0.00 4.79
1669 1718 1.561643 AGTGGATGTGTGATCGGACT 58.438 50.000 0.00 0.00 0.00 3.85
1670 1719 1.902508 AGTGGATGTGTGATCGGACTT 59.097 47.619 0.00 0.00 0.00 3.01
1671 1720 2.002586 GTGGATGTGTGATCGGACTTG 58.997 52.381 0.00 0.00 0.00 3.16
1672 1721 1.623311 TGGATGTGTGATCGGACTTGT 59.377 47.619 0.00 0.00 0.00 3.16
1673 1722 2.271800 GGATGTGTGATCGGACTTGTC 58.728 52.381 0.00 0.00 0.00 3.18
1674 1723 2.093973 GGATGTGTGATCGGACTTGTCT 60.094 50.000 0.61 0.00 0.00 3.41
1675 1724 2.724977 TGTGTGATCGGACTTGTCTC 57.275 50.000 0.61 0.00 0.00 3.36
1676 1725 1.068541 TGTGTGATCGGACTTGTCTCG 60.069 52.381 0.61 3.56 0.00 4.04
1677 1726 1.199327 GTGTGATCGGACTTGTCTCGA 59.801 52.381 13.49 13.49 37.33 4.04
1678 1727 1.468914 TGTGATCGGACTTGTCTCGAG 59.531 52.381 5.93 5.93 36.34 4.04
1679 1728 1.469308 GTGATCGGACTTGTCTCGAGT 59.531 52.381 13.13 0.00 36.34 4.18
1680 1729 1.468914 TGATCGGACTTGTCTCGAGTG 59.531 52.381 13.13 4.31 36.34 3.51
1681 1730 1.469308 GATCGGACTTGTCTCGAGTGT 59.531 52.381 13.13 7.51 36.34 3.55
1682 1731 1.315690 TCGGACTTGTCTCGAGTGTT 58.684 50.000 13.13 0.00 0.00 3.32
1683 1732 1.266175 TCGGACTTGTCTCGAGTGTTC 59.734 52.381 13.13 5.71 0.00 3.18
1684 1733 1.666311 CGGACTTGTCTCGAGTGTTCC 60.666 57.143 13.13 10.99 0.00 3.62
1685 1734 1.614413 GGACTTGTCTCGAGTGTTCCT 59.386 52.381 13.13 0.00 0.00 3.36
1686 1735 2.351932 GGACTTGTCTCGAGTGTTCCTC 60.352 54.545 13.13 1.69 36.80 3.71
1687 1736 1.614413 ACTTGTCTCGAGTGTTCCTCC 59.386 52.381 13.13 0.00 36.82 4.30
1688 1737 1.889829 CTTGTCTCGAGTGTTCCTCCT 59.110 52.381 13.13 0.00 36.82 3.69
1695 1744 2.632996 TCGAGTGTTCCTCCTTGTGATT 59.367 45.455 0.00 0.00 36.82 2.57
1698 1747 4.137543 GAGTGTTCCTCCTTGTGATTTGT 58.862 43.478 0.00 0.00 33.79 2.83
1729 1778 1.801395 GCGAGCTGCTATACAAACGGA 60.801 52.381 0.15 0.00 41.73 4.69
1736 1785 7.518370 CGAGCTGCTATACAAACGGATTTTAAT 60.518 37.037 0.15 0.00 0.00 1.40
1782 1831 1.076014 TCGCCTAGTGAGTGTGGGA 59.924 57.895 0.00 0.00 0.00 4.37
1816 1871 1.052124 TCCCACACGACCCAGAAACT 61.052 55.000 0.00 0.00 0.00 2.66
1823 1878 1.108776 CGACCCAGAAACTATCGGGA 58.891 55.000 0.00 0.00 45.39 5.14
1845 1901 5.485708 GGAATAGGGAGTAGGAATGCATACT 59.514 44.000 0.00 0.00 43.67 2.12
1867 1923 5.298276 ACTTTTTCCAGAACAAAGCGTATGA 59.702 36.000 11.56 0.00 31.74 2.15
1874 1930 2.698855 ACAAAGCGTATGAGATGCCT 57.301 45.000 0.00 0.00 41.44 4.75
1884 1940 1.798626 TGAGATGCCTGCACCTATCT 58.201 50.000 0.00 0.00 32.87 1.98
1901 1957 6.938596 CACCTATCTCAAATGCTCCATCATTA 59.061 38.462 0.00 0.00 35.77 1.90
1960 2016 7.163441 GGACTTCTGTGGTTTTACCTTATACA 58.837 38.462 0.00 0.00 39.58 2.29
2057 2135 2.731217 GCCACATCACAAACAGTTCAC 58.269 47.619 0.00 0.00 0.00 3.18
2059 2137 2.286950 CCACATCACAAACAGTTCACGG 60.287 50.000 0.00 0.00 0.00 4.94
2216 2294 7.817478 TGAACCATGTCGGATTATGATGTATAC 59.183 37.037 0.00 0.00 38.63 1.47
2224 2302 6.041069 TCGGATTATGATGTATACCACACACA 59.959 38.462 0.00 0.00 40.86 3.72
2229 2307 4.816392 TGATGTATACCACACACAGTGTC 58.184 43.478 2.14 0.00 43.92 3.67
2262 2341 0.466007 TGCGCCATAATGACCTGCAT 60.466 50.000 4.18 0.00 39.43 3.96
2286 2365 9.659830 CATAGCGTAATTTCACCCTAATTTAAC 57.340 33.333 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.392998 CCCACTCGCCAAATGTAGCT 60.393 55.000 0.00 0.00 0.00 3.32
139 142 3.576982 TCTTCATCCCAACTGTTCGTAGT 59.423 43.478 0.00 0.00 0.00 2.73
184 187 7.174080 TGAAAGAATTCGTTGTACATCAATGGA 59.826 33.333 11.50 0.00 41.76 3.41
235 254 9.970395 CATATAGCTCCAAGCAATAAAATTTGA 57.030 29.630 0.00 0.00 45.56 2.69
260 279 6.442952 CAAACCGAGAACATACCATTTTTCA 58.557 36.000 0.00 0.00 0.00 2.69
304 324 7.839680 ATTTATTTCCATACTGATGTTCCCC 57.160 36.000 0.00 0.00 0.00 4.81
345 365 0.686224 TTACCGTGGTTCGTCCCATT 59.314 50.000 0.00 0.00 36.74 3.16
360 380 3.955551 TCTTGTTCCAAACAGGGTTTACC 59.044 43.478 2.65 0.00 43.27 2.85
370 390 9.178758 AGATAACTTCCATATCTTGTTCCAAAC 57.821 33.333 0.00 0.00 36.88 2.93
406 427 0.721718 GTACCATGCAGCGTCACTTC 59.278 55.000 0.00 0.00 0.00 3.01
411 432 0.721718 GAAGTGTACCATGCAGCGTC 59.278 55.000 0.00 0.00 0.00 5.19
495 534 5.738619 TGTGCTTTGTATCTTCTAGGTCA 57.261 39.130 0.00 0.00 0.00 4.02
551 590 2.158325 TCATCCAACCCAAGCCTTTTCT 60.158 45.455 0.00 0.00 0.00 2.52
575 614 7.792374 TCTAACTTGCAGGCTTTATCAATAG 57.208 36.000 0.00 0.00 0.00 1.73
631 670 5.012354 ACAATTCTTGGTCCGGTAGAAGTAA 59.988 40.000 0.00 0.05 31.98 2.24
679 718 5.065235 TGCTGAGACAACAATCATTTCTCA 58.935 37.500 0.60 0.60 40.26 3.27
681 720 5.105877 CCATGCTGAGACAACAATCATTTCT 60.106 40.000 0.00 0.00 0.00 2.52
722 761 5.469479 CCTTCTTATGCACCAATTTTCGTT 58.531 37.500 0.00 0.00 0.00 3.85
752 792 5.048224 CCCATAGAAATCTGATGTGCATTCC 60.048 44.000 0.00 0.00 0.00 3.01
797 837 2.639065 GGGATGATGCACTACCGAAAA 58.361 47.619 0.00 0.00 0.00 2.29
803 843 0.109342 CCTGGGGGATGATGCACTAC 59.891 60.000 0.00 0.00 33.58 2.73
866 908 5.095691 AGCGTCAACATTAAGTTTCACAG 57.904 39.130 0.00 0.00 38.74 3.66
890 932 4.453478 CCTTAAGGAGGTCGTGGTAAAAAC 59.547 45.833 17.21 0.00 40.95 2.43
895 937 1.856629 CCCTTAAGGAGGTCGTGGTA 58.143 55.000 23.74 0.00 44.71 3.25
976 1020 1.656652 ACATCCACGCAATAGTCTGC 58.343 50.000 0.00 0.00 39.04 4.26
977 1021 4.154015 TCAAAACATCCACGCAATAGTCTG 59.846 41.667 0.00 0.00 0.00 3.51
978 1022 4.323417 TCAAAACATCCACGCAATAGTCT 58.677 39.130 0.00 0.00 0.00 3.24
1041 1085 0.035458 GATTACATCCCGCCCTCTGG 59.965 60.000 0.00 0.00 0.00 3.86
1075 1119 3.641434 AATCACCTCCAGATTGTCCAG 57.359 47.619 0.00 0.00 34.59 3.86
1076 1120 5.715439 ATTAATCACCTCCAGATTGTCCA 57.285 39.130 0.00 0.00 36.45 4.02
1096 1144 3.679917 CGTCCTCTGTTCTGCATGGTATT 60.680 47.826 0.00 0.00 0.00 1.89
1234 1283 8.417884 GGTCACAGAAAATCTAGCTAATCTAGT 58.582 37.037 0.00 0.00 44.10 2.57
1293 1342 3.692791 TCGTCCGTGAGAGTCATTATG 57.307 47.619 0.00 0.00 0.00 1.90
1294 1343 3.632604 ACATCGTCCGTGAGAGTCATTAT 59.367 43.478 0.00 0.00 0.00 1.28
1308 1357 6.696148 CACTAGAAATAACCAGTACATCGTCC 59.304 42.308 0.00 0.00 0.00 4.79
1363 1412 2.874014 TCATCCATGCTTTGACAACCA 58.126 42.857 0.00 0.00 0.00 3.67
1365 1414 4.771590 TCTTCATCCATGCTTTGACAAC 57.228 40.909 0.00 0.00 0.00 3.32
1367 1416 4.401022 AGTTCTTCATCCATGCTTTGACA 58.599 39.130 0.00 0.00 0.00 3.58
1368 1417 5.877012 TCTAGTTCTTCATCCATGCTTTGAC 59.123 40.000 0.00 0.00 0.00 3.18
1369 1418 6.053632 TCTAGTTCTTCATCCATGCTTTGA 57.946 37.500 0.00 0.00 0.00 2.69
1370 1419 6.111382 TCTCTAGTTCTTCATCCATGCTTTG 58.889 40.000 0.00 0.00 0.00 2.77
1371 1420 6.155910 TCTCTCTAGTTCTTCATCCATGCTTT 59.844 38.462 0.00 0.00 0.00 3.51
1372 1421 5.660417 TCTCTCTAGTTCTTCATCCATGCTT 59.340 40.000 0.00 0.00 0.00 3.91
1373 1422 5.207354 TCTCTCTAGTTCTTCATCCATGCT 58.793 41.667 0.00 0.00 0.00 3.79
1374 1423 5.528043 TCTCTCTAGTTCTTCATCCATGC 57.472 43.478 0.00 0.00 0.00 4.06
1375 1424 7.528996 AGATCTCTCTAGTTCTTCATCCATG 57.471 40.000 0.00 0.00 29.13 3.66
1376 1425 8.423349 CAAAGATCTCTCTAGTTCTTCATCCAT 58.577 37.037 0.00 0.00 39.70 3.41
1377 1426 7.632462 GCAAAGATCTCTCTAGTTCTTCATCCA 60.632 40.741 0.00 0.00 39.70 3.41
1378 1427 6.701400 GCAAAGATCTCTCTAGTTCTTCATCC 59.299 42.308 0.00 0.00 39.70 3.51
1379 1428 7.491682 AGCAAAGATCTCTCTAGTTCTTCATC 58.508 38.462 0.00 0.00 39.70 2.92
1380 1429 7.417797 GGAGCAAAGATCTCTCTAGTTCTTCAT 60.418 40.741 9.17 0.00 39.70 2.57
1381 1430 6.127479 GGAGCAAAGATCTCTCTAGTTCTTCA 60.127 42.308 9.17 0.00 39.70 3.02
1382 1431 6.096846 AGGAGCAAAGATCTCTCTAGTTCTTC 59.903 42.308 9.17 0.00 39.70 2.87
1383 1432 5.957774 AGGAGCAAAGATCTCTCTAGTTCTT 59.042 40.000 9.17 0.00 41.49 2.52
1384 1433 5.518865 AGGAGCAAAGATCTCTCTAGTTCT 58.481 41.667 9.17 0.00 33.96 3.01
1385 1434 5.852282 AGGAGCAAAGATCTCTCTAGTTC 57.148 43.478 9.17 0.78 0.00 3.01
1386 1435 6.619329 AAAGGAGCAAAGATCTCTCTAGTT 57.381 37.500 9.17 0.64 0.00 2.24
1387 1436 6.097696 GGTAAAGGAGCAAAGATCTCTCTAGT 59.902 42.308 9.17 0.00 0.00 2.57
1388 1437 6.462347 GGGTAAAGGAGCAAAGATCTCTCTAG 60.462 46.154 9.17 0.00 0.00 2.43
1389 1438 5.364157 GGGTAAAGGAGCAAAGATCTCTCTA 59.636 44.000 9.17 0.00 0.00 2.43
1390 1439 4.163268 GGGTAAAGGAGCAAAGATCTCTCT 59.837 45.833 9.17 1.38 0.00 3.10
1391 1440 4.447290 GGGTAAAGGAGCAAAGATCTCTC 58.553 47.826 0.00 0.00 0.00 3.20
1392 1441 3.201045 GGGGTAAAGGAGCAAAGATCTCT 59.799 47.826 0.00 0.00 0.00 3.10
1393 1442 3.546724 GGGGTAAAGGAGCAAAGATCTC 58.453 50.000 0.00 0.00 0.00 2.75
1394 1443 2.242452 GGGGGTAAAGGAGCAAAGATCT 59.758 50.000 0.00 0.00 0.00 2.75
1395 1444 2.656002 GGGGGTAAAGGAGCAAAGATC 58.344 52.381 0.00 0.00 0.00 2.75
1396 1445 2.828661 GGGGGTAAAGGAGCAAAGAT 57.171 50.000 0.00 0.00 0.00 2.40
1421 1470 1.467920 GTCTTGGCCTCCAAAGATGG 58.532 55.000 3.32 0.00 43.44 3.51
1422 1471 1.005215 AGGTCTTGGCCTCCAAAGATG 59.995 52.381 3.32 0.00 43.44 2.90
1423 1472 1.376649 AGGTCTTGGCCTCCAAAGAT 58.623 50.000 3.32 0.00 43.44 2.40
1424 1473 2.868504 AGGTCTTGGCCTCCAAAGA 58.131 52.632 3.32 0.89 43.44 2.52
1431 1480 0.846427 TCCAATGGAGGTCTTGGCCT 60.846 55.000 3.32 0.00 41.41 5.19
1432 1481 0.039618 TTCCAATGGAGGTCTTGGCC 59.960 55.000 0.86 0.00 41.41 5.36
1433 1482 1.923356 TTTCCAATGGAGGTCTTGGC 58.077 50.000 0.86 0.00 41.41 4.52
1434 1483 3.766545 TCTTTTCCAATGGAGGTCTTGG 58.233 45.455 0.86 0.00 42.72 3.61
1435 1484 4.400567 GGATCTTTTCCAATGGAGGTCTTG 59.599 45.833 0.86 0.00 44.74 3.02
1436 1485 4.604156 GGATCTTTTCCAATGGAGGTCTT 58.396 43.478 0.86 0.00 44.74 3.01
1437 1486 4.242336 GGATCTTTTCCAATGGAGGTCT 57.758 45.455 0.86 0.00 44.74 3.85
1448 1497 5.982890 TGAATTCACTTGGGATCTTTTCC 57.017 39.130 3.38 0.00 44.62 3.13
1449 1498 7.087007 GTCTTGAATTCACTTGGGATCTTTTC 58.913 38.462 7.89 0.00 0.00 2.29
1450 1499 6.015095 GGTCTTGAATTCACTTGGGATCTTTT 60.015 38.462 7.89 0.00 0.00 2.27
1451 1500 5.478332 GGTCTTGAATTCACTTGGGATCTTT 59.522 40.000 7.89 0.00 0.00 2.52
1452 1501 5.012893 GGTCTTGAATTCACTTGGGATCTT 58.987 41.667 7.89 0.00 0.00 2.40
1453 1502 4.568592 GGGTCTTGAATTCACTTGGGATCT 60.569 45.833 7.89 0.00 0.00 2.75
1454 1503 3.696548 GGGTCTTGAATTCACTTGGGATC 59.303 47.826 7.89 2.50 0.00 3.36
1455 1504 3.334881 AGGGTCTTGAATTCACTTGGGAT 59.665 43.478 7.89 0.00 0.00 3.85
1456 1505 2.716424 AGGGTCTTGAATTCACTTGGGA 59.284 45.455 7.89 0.00 0.00 4.37
1457 1506 3.084786 GAGGGTCTTGAATTCACTTGGG 58.915 50.000 7.89 0.00 0.00 4.12
1458 1507 3.503748 GTGAGGGTCTTGAATTCACTTGG 59.496 47.826 7.89 0.00 36.21 3.61
1459 1508 4.136796 TGTGAGGGTCTTGAATTCACTTG 58.863 43.478 7.89 1.87 39.05 3.16
1460 1509 4.437682 TGTGAGGGTCTTGAATTCACTT 57.562 40.909 7.89 0.00 39.05 3.16
1461 1510 4.392940 CTTGTGAGGGTCTTGAATTCACT 58.607 43.478 7.89 0.97 39.05 3.41
1462 1511 3.503748 CCTTGTGAGGGTCTTGAATTCAC 59.496 47.826 7.89 0.00 39.55 3.18
1463 1512 3.754965 CCTTGTGAGGGTCTTGAATTCA 58.245 45.455 3.38 3.38 39.55 2.57
1475 1524 0.462759 GCGGATCTTCCCTTGTGAGG 60.463 60.000 0.00 0.00 43.15 3.86
1476 1525 0.462759 GGCGGATCTTCCCTTGTGAG 60.463 60.000 0.00 0.00 31.13 3.51
1477 1526 1.198094 TGGCGGATCTTCCCTTGTGA 61.198 55.000 0.00 0.00 31.13 3.58
1478 1527 0.107017 ATGGCGGATCTTCCCTTGTG 60.107 55.000 0.00 0.00 31.13 3.33
1479 1528 0.107017 CATGGCGGATCTTCCCTTGT 60.107 55.000 0.00 0.00 31.13 3.16
1480 1529 0.820891 CCATGGCGGATCTTCCCTTG 60.821 60.000 0.00 0.00 36.56 3.61
1481 1530 0.988145 TCCATGGCGGATCTTCCCTT 60.988 55.000 6.96 0.00 39.64 3.95
1482 1531 1.384502 TCCATGGCGGATCTTCCCT 60.385 57.895 6.96 0.00 39.64 4.20
1483 1532 3.240491 TCCATGGCGGATCTTCCC 58.760 61.111 6.96 0.00 39.64 3.97
1491 1540 2.492773 GGGCTTGAATCCATGGCGG 61.493 63.158 6.96 0.00 41.81 6.13
1492 1541 2.492773 GGGGCTTGAATCCATGGCG 61.493 63.158 6.96 0.00 41.81 5.69
1493 1542 0.185901 TAGGGGCTTGAATCCATGGC 59.814 55.000 6.96 0.00 40.69 4.40
1494 1543 2.377869 AGATAGGGGCTTGAATCCATGG 59.622 50.000 4.97 4.97 0.00 3.66
1495 1544 3.330110 AGAGATAGGGGCTTGAATCCATG 59.670 47.826 0.00 0.00 0.00 3.66
1496 1545 3.586618 GAGAGATAGGGGCTTGAATCCAT 59.413 47.826 0.00 0.00 0.00 3.41
1497 1546 2.975489 GAGAGATAGGGGCTTGAATCCA 59.025 50.000 0.00 0.00 0.00 3.41
1498 1547 2.304470 GGAGAGATAGGGGCTTGAATCC 59.696 54.545 0.00 0.00 0.00 3.01
1499 1548 3.247162 AGGAGAGATAGGGGCTTGAATC 58.753 50.000 0.00 0.00 0.00 2.52
1500 1549 3.359110 AGGAGAGATAGGGGCTTGAAT 57.641 47.619 0.00 0.00 0.00 2.57
1501 1550 2.877154 AGGAGAGATAGGGGCTTGAA 57.123 50.000 0.00 0.00 0.00 2.69
1502 1551 3.064412 TCTAGGAGAGATAGGGGCTTGA 58.936 50.000 0.00 0.00 0.00 3.02
1503 1552 3.075283 TCTCTAGGAGAGATAGGGGCTTG 59.925 52.174 1.98 0.00 45.77 4.01
1504 1553 3.341338 TCTCTAGGAGAGATAGGGGCTT 58.659 50.000 1.98 0.00 45.77 4.35
1505 1554 3.012570 TCTCTAGGAGAGATAGGGGCT 57.987 52.381 1.98 0.00 45.77 5.19
1514 1563 9.807921 ATAGTTCTTCCTAAATCTCTAGGAGAG 57.192 37.037 3.65 0.00 46.46 3.20
1515 1564 9.802039 GATAGTTCTTCCTAAATCTCTAGGAGA 57.198 37.037 0.00 0.00 46.46 3.71
1516 1565 9.807921 AGATAGTTCTTCCTAAATCTCTAGGAG 57.192 37.037 0.00 0.00 46.46 3.69
1521 1570 9.890915 ATGGTAGATAGTTCTTCCTAAATCTCT 57.109 33.333 1.21 0.00 39.51 3.10
1523 1572 9.661954 TGATGGTAGATAGTTCTTCCTAAATCT 57.338 33.333 1.21 0.00 39.51 2.40
1526 1575 9.488762 TCTTGATGGTAGATAGTTCTTCCTAAA 57.511 33.333 1.21 0.00 39.51 1.85
1527 1576 8.915036 GTCTTGATGGTAGATAGTTCTTCCTAA 58.085 37.037 1.21 0.00 39.51 2.69
1528 1577 7.506261 GGTCTTGATGGTAGATAGTTCTTCCTA 59.494 40.741 1.21 0.00 39.51 2.94
1529 1578 6.325286 GGTCTTGATGGTAGATAGTTCTTCCT 59.675 42.308 1.21 0.00 39.51 3.36
1530 1579 6.463190 GGGTCTTGATGGTAGATAGTTCTTCC 60.463 46.154 0.00 0.00 39.30 3.46
1531 1580 6.463190 GGGGTCTTGATGGTAGATAGTTCTTC 60.463 46.154 0.00 0.00 33.17 2.87
1532 1581 5.367060 GGGGTCTTGATGGTAGATAGTTCTT 59.633 44.000 0.00 0.00 33.17 2.52
1533 1582 4.902448 GGGGTCTTGATGGTAGATAGTTCT 59.098 45.833 0.00 0.00 35.90 3.01
1534 1583 4.654262 TGGGGTCTTGATGGTAGATAGTTC 59.346 45.833 0.00 0.00 0.00 3.01
1535 1584 4.409247 GTGGGGTCTTGATGGTAGATAGTT 59.591 45.833 0.00 0.00 0.00 2.24
1536 1585 3.967987 GTGGGGTCTTGATGGTAGATAGT 59.032 47.826 0.00 0.00 0.00 2.12
1537 1586 4.227197 AGTGGGGTCTTGATGGTAGATAG 58.773 47.826 0.00 0.00 0.00 2.08
1538 1587 4.280789 AGTGGGGTCTTGATGGTAGATA 57.719 45.455 0.00 0.00 0.00 1.98
1539 1588 3.136641 AGTGGGGTCTTGATGGTAGAT 57.863 47.619 0.00 0.00 0.00 1.98
1540 1589 2.642171 AGTGGGGTCTTGATGGTAGA 57.358 50.000 0.00 0.00 0.00 2.59
1541 1590 2.092914 GGAAGTGGGGTCTTGATGGTAG 60.093 54.545 0.00 0.00 0.00 3.18
1542 1591 1.913419 GGAAGTGGGGTCTTGATGGTA 59.087 52.381 0.00 0.00 0.00 3.25
1543 1592 0.698818 GGAAGTGGGGTCTTGATGGT 59.301 55.000 0.00 0.00 0.00 3.55
1544 1593 0.995024 AGGAAGTGGGGTCTTGATGG 59.005 55.000 0.00 0.00 0.00 3.51
1545 1594 1.912043 AGAGGAAGTGGGGTCTTGATG 59.088 52.381 0.00 0.00 0.00 3.07
1546 1595 2.307098 CAAGAGGAAGTGGGGTCTTGAT 59.693 50.000 5.20 0.00 45.87 2.57
1547 1596 1.699634 CAAGAGGAAGTGGGGTCTTGA 59.300 52.381 5.20 0.00 45.87 3.02
1548 1597 1.271597 CCAAGAGGAAGTGGGGTCTTG 60.272 57.143 4.31 4.31 43.67 3.02
1549 1598 1.068121 CCAAGAGGAAGTGGGGTCTT 58.932 55.000 0.00 0.00 36.89 3.01
1550 1599 0.193574 TCCAAGAGGAAGTGGGGTCT 59.806 55.000 0.00 0.00 42.23 3.85
1551 1600 2.773458 TCCAAGAGGAAGTGGGGTC 58.227 57.895 0.00 0.00 42.23 4.46
1561 1610 3.973425 AGTTCATCCCAAATCCAAGAGG 58.027 45.455 0.00 0.00 0.00 3.69
1562 1611 5.990120 AAAGTTCATCCCAAATCCAAGAG 57.010 39.130 0.00 0.00 0.00 2.85
1563 1612 5.714806 GGTAAAGTTCATCCCAAATCCAAGA 59.285 40.000 0.00 0.00 0.00 3.02
1564 1613 5.716703 AGGTAAAGTTCATCCCAAATCCAAG 59.283 40.000 0.00 0.00 0.00 3.61
1565 1614 5.650283 AGGTAAAGTTCATCCCAAATCCAA 58.350 37.500 0.00 0.00 0.00 3.53
1566 1615 5.269554 AGGTAAAGTTCATCCCAAATCCA 57.730 39.130 0.00 0.00 0.00 3.41
1567 1616 5.480422 ACAAGGTAAAGTTCATCCCAAATCC 59.520 40.000 0.00 0.00 0.00 3.01
1568 1617 6.590234 ACAAGGTAAAGTTCATCCCAAATC 57.410 37.500 0.00 0.00 0.00 2.17
1569 1618 6.014584 GGAACAAGGTAAAGTTCATCCCAAAT 60.015 38.462 7.49 0.00 44.46 2.32
1570 1619 5.303333 GGAACAAGGTAAAGTTCATCCCAAA 59.697 40.000 7.49 0.00 44.46 3.28
1571 1620 4.830600 GGAACAAGGTAAAGTTCATCCCAA 59.169 41.667 7.49 0.00 44.46 4.12
1572 1621 4.105697 AGGAACAAGGTAAAGTTCATCCCA 59.894 41.667 7.49 0.00 44.46 4.37
1573 1622 4.663334 AGGAACAAGGTAAAGTTCATCCC 58.337 43.478 7.49 0.00 44.46 3.85
1574 1623 5.881777 GAGGAACAAGGTAAAGTTCATCC 57.118 43.478 8.30 0.00 44.95 3.51
1576 1625 7.780271 AGAAAAGAGGAACAAGGTAAAGTTCAT 59.220 33.333 7.49 0.20 44.46 2.57
1577 1626 7.116736 AGAAAAGAGGAACAAGGTAAAGTTCA 58.883 34.615 7.49 0.00 44.46 3.18
1578 1627 7.499563 AGAGAAAAGAGGAACAAGGTAAAGTTC 59.500 37.037 0.00 0.00 42.51 3.01
1579 1628 7.347252 AGAGAAAAGAGGAACAAGGTAAAGTT 58.653 34.615 0.00 0.00 0.00 2.66
1580 1629 6.901300 AGAGAAAAGAGGAACAAGGTAAAGT 58.099 36.000 0.00 0.00 0.00 2.66
1581 1630 7.255277 CCAAGAGAAAAGAGGAACAAGGTAAAG 60.255 40.741 0.00 0.00 0.00 1.85
1582 1631 6.546034 CCAAGAGAAAAGAGGAACAAGGTAAA 59.454 38.462 0.00 0.00 0.00 2.01
1583 1632 6.062095 CCAAGAGAAAAGAGGAACAAGGTAA 58.938 40.000 0.00 0.00 0.00 2.85
1584 1633 5.368523 TCCAAGAGAAAAGAGGAACAAGGTA 59.631 40.000 0.00 0.00 0.00 3.08
1585 1634 4.166144 TCCAAGAGAAAAGAGGAACAAGGT 59.834 41.667 0.00 0.00 0.00 3.50
1586 1635 4.718961 TCCAAGAGAAAAGAGGAACAAGG 58.281 43.478 0.00 0.00 0.00 3.61
1587 1636 6.264067 ACAATCCAAGAGAAAAGAGGAACAAG 59.736 38.462 0.00 0.00 31.17 3.16
1588 1637 6.129179 ACAATCCAAGAGAAAAGAGGAACAA 58.871 36.000 0.00 0.00 31.17 2.83
1589 1638 5.694995 ACAATCCAAGAGAAAAGAGGAACA 58.305 37.500 0.00 0.00 31.17 3.18
1590 1639 6.641169 AACAATCCAAGAGAAAAGAGGAAC 57.359 37.500 0.00 0.00 31.17 3.62
1591 1640 6.607198 ACAAACAATCCAAGAGAAAAGAGGAA 59.393 34.615 0.00 0.00 31.17 3.36
1592 1641 6.039717 CACAAACAATCCAAGAGAAAAGAGGA 59.960 38.462 0.00 0.00 0.00 3.71
1593 1642 6.183360 ACACAAACAATCCAAGAGAAAAGAGG 60.183 38.462 0.00 0.00 0.00 3.69
1594 1643 6.799512 ACACAAACAATCCAAGAGAAAAGAG 58.200 36.000 0.00 0.00 0.00 2.85
1595 1644 6.773976 ACACAAACAATCCAAGAGAAAAGA 57.226 33.333 0.00 0.00 0.00 2.52
1596 1645 7.115378 GCATACACAAACAATCCAAGAGAAAAG 59.885 37.037 0.00 0.00 0.00 2.27
1597 1646 6.922957 GCATACACAAACAATCCAAGAGAAAA 59.077 34.615 0.00 0.00 0.00 2.29
1598 1647 6.265196 AGCATACACAAACAATCCAAGAGAAA 59.735 34.615 0.00 0.00 0.00 2.52
1599 1648 5.769662 AGCATACACAAACAATCCAAGAGAA 59.230 36.000 0.00 0.00 0.00 2.87
1600 1649 5.316167 AGCATACACAAACAATCCAAGAGA 58.684 37.500 0.00 0.00 0.00 3.10
1601 1650 5.633830 AGCATACACAAACAATCCAAGAG 57.366 39.130 0.00 0.00 0.00 2.85
1602 1651 5.301551 ACAAGCATACACAAACAATCCAAGA 59.698 36.000 0.00 0.00 0.00 3.02
1603 1652 5.403166 CACAAGCATACACAAACAATCCAAG 59.597 40.000 0.00 0.00 0.00 3.61
1604 1653 5.288015 CACAAGCATACACAAACAATCCAA 58.712 37.500 0.00 0.00 0.00 3.53
1605 1654 4.261952 CCACAAGCATACACAAACAATCCA 60.262 41.667 0.00 0.00 0.00 3.41
1606 1655 4.022416 TCCACAAGCATACACAAACAATCC 60.022 41.667 0.00 0.00 0.00 3.01
1607 1656 5.119931 TCCACAAGCATACACAAACAATC 57.880 39.130 0.00 0.00 0.00 2.67
1608 1657 5.068987 AGTTCCACAAGCATACACAAACAAT 59.931 36.000 0.00 0.00 0.00 2.71
1609 1658 4.400884 AGTTCCACAAGCATACACAAACAA 59.599 37.500 0.00 0.00 0.00 2.83
1610 1659 3.951037 AGTTCCACAAGCATACACAAACA 59.049 39.130 0.00 0.00 0.00 2.83
1611 1660 4.036262 TGAGTTCCACAAGCATACACAAAC 59.964 41.667 0.00 0.00 0.00 2.93
1612 1661 4.203226 TGAGTTCCACAAGCATACACAAA 58.797 39.130 0.00 0.00 0.00 2.83
1613 1662 3.814625 TGAGTTCCACAAGCATACACAA 58.185 40.909 0.00 0.00 0.00 3.33
1614 1663 3.483808 TGAGTTCCACAAGCATACACA 57.516 42.857 0.00 0.00 0.00 3.72
1615 1664 3.753272 ACATGAGTTCCACAAGCATACAC 59.247 43.478 0.00 0.00 0.00 2.90
1616 1665 3.752747 CACATGAGTTCCACAAGCATACA 59.247 43.478 0.00 0.00 0.00 2.29
1617 1666 3.753272 ACACATGAGTTCCACAAGCATAC 59.247 43.478 0.00 0.00 0.00 2.39
1618 1667 4.019792 ACACATGAGTTCCACAAGCATA 57.980 40.909 0.00 0.00 0.00 3.14
1619 1668 2.867624 ACACATGAGTTCCACAAGCAT 58.132 42.857 0.00 0.00 0.00 3.79
1620 1669 2.346766 ACACATGAGTTCCACAAGCA 57.653 45.000 0.00 0.00 0.00 3.91
1621 1670 3.181487 ACAAACACATGAGTTCCACAAGC 60.181 43.478 9.04 0.00 0.00 4.01
1622 1671 4.336433 AGACAAACACATGAGTTCCACAAG 59.664 41.667 9.04 0.00 0.00 3.16
1623 1672 4.269183 AGACAAACACATGAGTTCCACAA 58.731 39.130 9.04 0.00 0.00 3.33
1624 1673 3.884895 AGACAAACACATGAGTTCCACA 58.115 40.909 9.04 0.00 0.00 4.17
1625 1674 5.934625 AGATAGACAAACACATGAGTTCCAC 59.065 40.000 9.04 4.10 0.00 4.02
1626 1675 6.114187 AGATAGACAAACACATGAGTTCCA 57.886 37.500 9.04 0.00 0.00 3.53
1627 1676 7.276658 CACTAGATAGACAAACACATGAGTTCC 59.723 40.741 9.04 2.62 0.00 3.62
1628 1677 7.276658 CCACTAGATAGACAAACACATGAGTTC 59.723 40.741 9.04 0.00 0.00 3.01
1629 1678 7.039011 TCCACTAGATAGACAAACACATGAGTT 60.039 37.037 0.00 0.00 0.00 3.01
1630 1679 6.437477 TCCACTAGATAGACAAACACATGAGT 59.563 38.462 0.00 0.00 0.00 3.41
1631 1680 6.867550 TCCACTAGATAGACAAACACATGAG 58.132 40.000 0.00 0.00 0.00 2.90
1632 1681 6.850752 TCCACTAGATAGACAAACACATGA 57.149 37.500 0.00 0.00 0.00 3.07
1633 1682 7.010830 CACATCCACTAGATAGACAAACACATG 59.989 40.741 0.00 0.00 32.37 3.21
1634 1683 7.044181 CACATCCACTAGATAGACAAACACAT 58.956 38.462 0.00 0.00 32.37 3.21
1635 1684 6.014584 ACACATCCACTAGATAGACAAACACA 60.015 38.462 0.00 0.00 32.37 3.72
1636 1685 6.311445 CACACATCCACTAGATAGACAAACAC 59.689 42.308 0.00 0.00 32.37 3.32
1637 1686 6.210584 TCACACATCCACTAGATAGACAAACA 59.789 38.462 0.00 0.00 32.37 2.83
1638 1687 6.631016 TCACACATCCACTAGATAGACAAAC 58.369 40.000 0.00 0.00 32.37 2.93
1639 1688 6.850752 TCACACATCCACTAGATAGACAAA 57.149 37.500 0.00 0.00 32.37 2.83
1640 1689 6.238759 CGATCACACATCCACTAGATAGACAA 60.239 42.308 0.00 0.00 32.37 3.18
1641 1690 5.239525 CGATCACACATCCACTAGATAGACA 59.760 44.000 0.00 0.00 32.37 3.41
1642 1691 5.335269 CCGATCACACATCCACTAGATAGAC 60.335 48.000 0.00 0.00 32.37 2.59
1643 1692 4.762251 CCGATCACACATCCACTAGATAGA 59.238 45.833 0.00 0.00 32.37 1.98
1644 1693 4.762251 TCCGATCACACATCCACTAGATAG 59.238 45.833 0.00 0.00 32.37 2.08
1645 1694 4.519350 GTCCGATCACACATCCACTAGATA 59.481 45.833 0.00 0.00 32.37 1.98
1646 1695 3.319405 GTCCGATCACACATCCACTAGAT 59.681 47.826 0.00 0.00 34.66 1.98
1647 1696 2.688446 GTCCGATCACACATCCACTAGA 59.312 50.000 0.00 0.00 0.00 2.43
1648 1697 2.690497 AGTCCGATCACACATCCACTAG 59.310 50.000 0.00 0.00 0.00 2.57
1649 1698 2.735151 AGTCCGATCACACATCCACTA 58.265 47.619 0.00 0.00 0.00 2.74
1650 1699 1.561643 AGTCCGATCACACATCCACT 58.438 50.000 0.00 0.00 0.00 4.00
1651 1700 2.002586 CAAGTCCGATCACACATCCAC 58.997 52.381 0.00 0.00 0.00 4.02
1652 1701 1.623311 ACAAGTCCGATCACACATCCA 59.377 47.619 0.00 0.00 0.00 3.41
1653 1702 2.093973 AGACAAGTCCGATCACACATCC 60.094 50.000 0.00 0.00 0.00 3.51
1654 1703 3.182967 GAGACAAGTCCGATCACACATC 58.817 50.000 0.00 0.00 0.00 3.06
1655 1704 2.416027 CGAGACAAGTCCGATCACACAT 60.416 50.000 0.00 0.00 0.00 3.21
1656 1705 1.068541 CGAGACAAGTCCGATCACACA 60.069 52.381 0.00 0.00 0.00 3.72
1657 1706 1.199327 TCGAGACAAGTCCGATCACAC 59.801 52.381 8.87 0.00 31.09 3.82
1658 1707 1.468914 CTCGAGACAAGTCCGATCACA 59.531 52.381 6.58 0.00 33.95 3.58
1659 1708 1.469308 ACTCGAGACAAGTCCGATCAC 59.531 52.381 21.68 0.00 33.95 3.06
1660 1709 1.468914 CACTCGAGACAAGTCCGATCA 59.531 52.381 21.68 0.00 33.95 2.92
1661 1710 1.469308 ACACTCGAGACAAGTCCGATC 59.531 52.381 21.68 0.00 33.95 3.69
1662 1711 1.535833 ACACTCGAGACAAGTCCGAT 58.464 50.000 21.68 0.00 33.95 4.18
1663 1712 1.266175 GAACACTCGAGACAAGTCCGA 59.734 52.381 21.68 11.36 33.57 4.55
1664 1713 1.666311 GGAACACTCGAGACAAGTCCG 60.666 57.143 21.68 1.16 0.00 4.79
1665 1714 1.614413 AGGAACACTCGAGACAAGTCC 59.386 52.381 21.68 16.58 0.00 3.85
1666 1715 2.936316 GAGGAACACTCGAGACAAGTC 58.064 52.381 21.68 8.45 36.29 3.01
1676 1725 4.137543 ACAAATCACAAGGAGGAACACTC 58.862 43.478 0.00 0.00 45.84 3.51
1677 1726 4.137543 GACAAATCACAAGGAGGAACACT 58.862 43.478 0.00 0.00 0.00 3.55
1678 1727 3.882888 TGACAAATCACAAGGAGGAACAC 59.117 43.478 0.00 0.00 0.00 3.32
1679 1728 4.163441 TGACAAATCACAAGGAGGAACA 57.837 40.909 0.00 0.00 0.00 3.18
1695 1744 0.319555 GCTCGCTGTACCAGTGACAA 60.320 55.000 3.50 0.00 44.56 3.18
1698 1747 1.586541 CAGCTCGCTGTACCAGTGA 59.413 57.895 10.65 7.23 46.76 3.41
1729 1778 6.284459 TGTTGTTGCGAAAAGGGATTAAAAT 58.716 32.000 0.00 0.00 0.00 1.82
1736 1785 3.810310 AAATGTTGTTGCGAAAAGGGA 57.190 38.095 0.00 0.00 0.00 4.20
1743 1792 4.030134 ACGGTTTAAAATGTTGTTGCGA 57.970 36.364 0.00 0.00 0.00 5.10
1747 1796 3.067040 AGGCGACGGTTTAAAATGTTGTT 59.933 39.130 0.00 0.00 0.00 2.83
1816 1871 5.269991 CATTCCTACTCCCTATTCCCGATA 58.730 45.833 0.00 0.00 0.00 2.92
1823 1878 7.394144 AAAGTATGCATTCCTACTCCCTATT 57.606 36.000 3.54 0.00 0.00 1.73
1845 1901 5.529430 TCTCATACGCTTTGTTCTGGAAAAA 59.471 36.000 0.00 0.00 0.00 1.94
1867 1923 1.798626 TGAGATAGGTGCAGGCATCT 58.201 50.000 12.26 12.26 40.90 2.90
1874 1930 2.239402 TGGAGCATTTGAGATAGGTGCA 59.761 45.455 0.00 0.00 38.23 4.57
1884 1940 5.985530 CGAGTAGTAATGATGGAGCATTTGA 59.014 40.000 0.00 0.00 39.15 2.69
1901 1957 0.031585 TGCGAGCACAAACGAGTAGT 59.968 50.000 0.00 0.00 0.00 2.73
1998 2076 1.369692 CAGTTGGGTACGTGCCTGA 59.630 57.895 22.50 8.46 0.00 3.86
2011 2089 2.937591 TCGTAAACGTAGAGCCAGTTG 58.062 47.619 2.02 0.00 40.80 3.16
2057 2135 1.438059 CGCACACGCTTTACAACCG 60.438 57.895 0.00 0.00 35.30 4.44
2059 2137 3.404564 CTTATCGCACACGCTTTACAAC 58.595 45.455 0.00 0.00 39.84 3.32
2224 2302 3.672511 CGCACACGTCTATAAAGGACACT 60.673 47.826 0.00 0.00 33.73 3.55
2229 2307 0.928229 GGCGCACACGTCTATAAAGG 59.072 55.000 10.83 0.00 41.84 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.