Multiple sequence alignment - TraesCS5D01G153600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G153600 chr5D 100.000 6497 0 0 1 6497 242022054 242015558 0.000000e+00 11998.0
1 TraesCS5D01G153600 chr5D 90.132 152 10 3 6349 6497 354839365 354839216 6.650000e-45 193.0
2 TraesCS5D01G153600 chr5D 89.362 47 3 2 1703 1747 554366996 554366950 2.530000e-04 58.4
3 TraesCS5D01G153600 chr5D 94.595 37 0 2 1703 1738 175782090 175782055 1.000000e-03 56.5
4 TraesCS5D01G153600 chr5A 94.193 3961 129 53 2071 5979 312245350 312241439 0.000000e+00 5947.0
5 TraesCS5D01G153600 chr5A 89.918 1587 99 38 12 1575 312247432 312245884 0.000000e+00 1988.0
6 TraesCS5D01G153600 chr5A 89.101 367 12 6 5983 6337 312234419 312234069 1.290000e-116 431.0
7 TraesCS5D01G153600 chr5A 85.345 232 20 8 5437 5668 614167160 614166943 1.820000e-55 228.0
8 TraesCS5D01G153600 chr5A 95.575 113 5 0 1846 1958 312245459 312245347 1.440000e-41 182.0
9 TraesCS5D01G153600 chr5A 97.059 34 1 0 1702 1735 630026271 630026304 2.530000e-04 58.4
10 TraesCS5D01G153600 chr5A 96.875 32 0 1 3581 3611 312265302 312265271 1.200000e-02 52.8
11 TraesCS5D01G153600 chr5B 94.391 1676 62 17 2042 3691 257013971 257012302 0.000000e+00 2545.0
12 TraesCS5D01G153600 chr5B 95.267 972 32 8 3704 4662 257012317 257011347 0.000000e+00 1528.0
13 TraesCS5D01G153600 chr5B 83.185 898 59 29 5373 6205 257004783 257003913 0.000000e+00 737.0
14 TraesCS5D01G153600 chr5B 89.234 548 40 6 4650 5192 257005320 257004787 0.000000e+00 667.0
15 TraesCS5D01G153600 chr5B 81.818 671 45 37 538 1178 257017244 257016621 5.850000e-135 492.0
16 TraesCS5D01G153600 chr5B 88.889 162 13 5 313 469 257017398 257017237 1.850000e-45 195.0
17 TraesCS5D01G153600 chr5B 93.750 128 8 0 1901 2028 257014082 257013955 6.650000e-45 193.0
18 TraesCS5D01G153600 chr5B 89.437 142 7 5 6194 6335 257003882 257003749 8.660000e-39 172.0
19 TraesCS5D01G153600 chr5B 88.710 124 3 3 1183 1306 257016500 257016388 2.440000e-29 141.0
20 TraesCS5D01G153600 chr5B 89.796 98 6 2 1605 1698 257014263 257014166 8.850000e-24 122.0
21 TraesCS5D01G153600 chr5B 83.594 128 18 2 44 168 257017595 257017468 4.120000e-22 117.0
22 TraesCS5D01G153600 chr5B 91.045 67 4 2 5218 5282 711742601 711742667 8.970000e-14 89.8
23 TraesCS5D01G153600 chr3D 88.312 231 13 8 5438 5668 482119904 482120120 1.390000e-66 265.0
24 TraesCS5D01G153600 chr3D 91.156 147 13 0 6350 6496 523207922 523207776 3.970000e-47 200.0
25 TraesCS5D01G153600 chr3D 87.791 172 19 2 6327 6497 525655909 525655739 3.970000e-47 200.0
26 TraesCS5D01G153600 chr3D 90.132 152 14 1 6347 6497 590751751 590751902 5.140000e-46 196.0
27 TraesCS5D01G153600 chr3D 89.855 69 5 2 5227 5293 423260079 423260147 3.230000e-13 87.9
28 TraesCS5D01G153600 chr3D 88.636 44 4 1 1703 1746 610346988 610347030 1.200000e-02 52.8
29 TraesCS5D01G153600 chr6A 81.155 329 34 18 5441 5767 304899372 304899070 8.420000e-59 239.0
30 TraesCS5D01G153600 chr6A 95.082 61 1 2 5213 5272 538047986 538048045 1.930000e-15 95.3
31 TraesCS5D01G153600 chr6A 94.595 37 2 0 1706 1742 8213305 8213269 2.530000e-04 58.4
32 TraesCS5D01G153600 chr1A 81.366 322 35 16 5438 5758 562698762 562699059 8.420000e-59 239.0
33 TraesCS5D01G153600 chr1A 90.244 41 3 1 1706 1745 474384748 474384788 1.200000e-02 52.8
34 TraesCS5D01G153600 chr4B 86.854 213 18 5 5441 5653 359898849 359898647 5.070000e-56 230.0
35 TraesCS5D01G153600 chr4B 80.612 98 17 2 2415 2511 59204926 59205022 2.510000e-09 75.0
36 TraesCS5D01G153600 chr4B 100.000 31 0 0 1701 1731 507357777 507357747 2.530000e-04 58.4
37 TraesCS5D01G153600 chr4B 100.000 31 0 0 1701 1731 551262864 551262894 2.530000e-04 58.4
38 TraesCS5D01G153600 chr4B 92.500 40 1 2 1703 1741 231034722 231034684 1.000000e-03 56.5
39 TraesCS5D01G153600 chr2A 86.512 215 19 5 5438 5652 305598948 305599152 1.820000e-55 228.0
40 TraesCS5D01G153600 chr2A 91.275 149 12 1 6350 6497 729555245 729555097 1.100000e-47 202.0
41 TraesCS5D01G153600 chr2A 89.041 73 2 3 5200 5272 65084795 65084861 1.160000e-12 86.1
42 TraesCS5D01G153600 chr2D 90.541 148 14 0 6350 6497 644282067 644282214 5.140000e-46 196.0
43 TraesCS5D01G153600 chr2D 90.132 152 10 3 6346 6497 37935941 37936087 6.650000e-45 193.0
44 TraesCS5D01G153600 chr2D 92.308 65 3 2 5226 5289 631487226 631487289 2.490000e-14 91.6
45 TraesCS5D01G153600 chr2D 87.755 49 4 2 1706 1752 592729071 592729023 1.000000e-03 56.5
46 TraesCS5D01G153600 chr7D 90.541 148 13 1 6350 6497 49806593 49806739 1.850000e-45 195.0
47 TraesCS5D01G153600 chr3A 89.032 155 17 0 6343 6497 522052709 522052863 6.650000e-45 193.0
48 TraesCS5D01G153600 chr4A 90.000 100 10 0 1051 1150 466643944 466643845 5.290000e-26 130.0
49 TraesCS5D01G153600 chr4A 87.838 74 7 2 5224 5296 710779509 710779437 1.160000e-12 86.1
50 TraesCS5D01G153600 chr4A 89.362 47 4 1 1703 1748 659188428 659188382 2.530000e-04 58.4
51 TraesCS5D01G153600 chr4A 90.698 43 2 2 1706 1747 17481969 17481928 1.000000e-03 56.5
52 TraesCS5D01G153600 chr4A 90.476 42 3 1 1705 1745 683883574 683883615 3.000000e-03 54.7
53 TraesCS5D01G153600 chr3B 96.429 56 2 0 5217 5272 777994687 777994742 6.940000e-15 93.5
54 TraesCS5D01G153600 chr1B 89.706 68 6 1 5216 5282 151463494 151463427 1.160000e-12 86.1
55 TraesCS5D01G153600 chr1B 97.059 34 1 0 1702 1735 357593952 357593985 2.530000e-04 58.4
56 TraesCS5D01G153600 chr1B 94.595 37 2 0 1702 1738 516582573 516582537 2.530000e-04 58.4
57 TraesCS5D01G153600 chr1B 94.595 37 2 0 1702 1738 664204338 664204302 2.530000e-04 58.4
58 TraesCS5D01G153600 chr6B 91.489 47 2 2 1694 1740 185011549 185011505 5.440000e-06 63.9
59 TraesCS5D01G153600 chr7B 90.698 43 3 1 1706 1747 72609120 72609162 1.000000e-03 56.5
60 TraesCS5D01G153600 chr7B 96.970 33 0 1 1701 1733 705867439 705867470 3.000000e-03 54.7
61 TraesCS5D01G153600 chr6D 88.889 45 3 2 1703 1745 120657664 120657620 3.000000e-03 54.7
62 TraesCS5D01G153600 chr4D 100.000 29 0 0 1703 1731 436953151 436953179 3.000000e-03 54.7
63 TraesCS5D01G153600 chr4D 100.000 29 0 0 1703 1731 436959009 436959037 3.000000e-03 54.7
64 TraesCS5D01G153600 chr4D 90.476 42 3 1 1705 1745 477107839 477107880 3.000000e-03 54.7
65 TraesCS5D01G153600 chr4D 100.000 28 0 0 1706 1733 214998304 214998331 1.200000e-02 52.8
66 TraesCS5D01G153600 chr4D 90.244 41 2 2 1706 1745 215003677 215003638 1.200000e-02 52.8
67 TraesCS5D01G153600 chr4D 100.000 28 0 0 1705 1732 258922352 258922325 1.200000e-02 52.8
68 TraesCS5D01G153600 chr1D 100.000 29 0 0 1703 1731 335585037 335585065 3.000000e-03 54.7
69 TraesCS5D01G153600 chrUn 90.244 41 3 1 1706 1745 42479324 42479284 1.200000e-02 52.8
70 TraesCS5D01G153600 chrUn 100.000 28 0 0 1704 1731 42635416 42635389 1.200000e-02 52.8
71 TraesCS5D01G153600 chrUn 100.000 28 0 0 1704 1731 42892579 42892606 1.200000e-02 52.8
72 TraesCS5D01G153600 chrUn 100.000 28 0 0 1706 1733 94184264 94184237 1.200000e-02 52.8
73 TraesCS5D01G153600 chrUn 100.000 28 0 0 1704 1731 252849706 252849679 1.200000e-02 52.8
74 TraesCS5D01G153600 chrUn 100.000 28 0 0 1704 1731 367959442 367959415 1.200000e-02 52.8
75 TraesCS5D01G153600 chr2B 87.755 49 1 4 1702 1748 45097696 45097651 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G153600 chr5D 242015558 242022054 6496 True 11998.000000 11998 100.000000 1 6497 1 chr5D.!!$R2 6496
1 TraesCS5D01G153600 chr5A 312241439 312247432 5993 True 2705.666667 5947 93.228667 12 5979 3 chr5A.!!$R4 5967
2 TraesCS5D01G153600 chr5B 257011347 257017595 6248 True 666.625000 2545 89.526875 44 4662 8 chr5B.!!$R2 4618
3 TraesCS5D01G153600 chr5B 257003749 257005320 1571 True 525.333333 737 87.285333 4650 6335 3 chr5B.!!$R1 1685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 483 0.698818 AACCCCGGAAATCTCAGCTT 59.301 50.000 0.73 0.00 0.00 3.74 F
1683 3899 0.037326 TCGAACTGCCCAGACATGTC 60.037 55.000 18.47 18.47 0.00 3.06 F
1829 4045 0.249615 CGGATCCGCATGTCAGTGAT 60.250 55.000 23.37 0.00 0.00 3.06 F
1991 4207 0.771755 AACTCCTTTCCCTGTGTCCC 59.228 55.000 0.00 0.00 0.00 4.46 F
2796 5020 1.197721 GGACAGTTGCAGGAATGAACG 59.802 52.381 0.00 0.00 0.00 3.95 F
3453 5697 0.303493 AAACACTACACAAGCACGCG 59.697 50.000 3.53 3.53 0.00 6.01 F
3466 5710 1.052287 GCACGCGAAGTTTGAAATGG 58.948 50.000 15.93 0.00 0.00 3.16 F
5080 7348 3.573772 CTCGTGGGCACAGAAGCGA 62.574 63.158 0.00 0.00 34.64 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 4053 0.108945 GCATCTGCTTTTGGCCACTC 60.109 55.000 3.88 0.00 40.92 3.51 R
2769 4993 0.036010 CCTGCAACTGTCCCTCGATT 60.036 55.000 0.00 0.00 0.00 3.34 R
2770 4994 0.904865 TCCTGCAACTGTCCCTCGAT 60.905 55.000 0.00 0.00 0.00 3.59 R
2853 5077 1.149401 GAGTAAGCCTGCATCCCCC 59.851 63.158 0.00 0.00 0.00 5.40 R
4503 6763 0.391927 GGCCACGTACCACAGCATTA 60.392 55.000 0.00 0.00 0.00 1.90 R
5080 7348 0.239347 GAAAGAACGCTGCATGCTGT 59.761 50.000 23.42 14.41 40.11 4.40 R
5109 7377 2.107378 TGTATTTCCTGGAACTGCACCA 59.893 45.455 9.04 0.00 35.96 4.17 R
6372 8760 0.041488 GAGCATGTATGAGCGCTTGC 60.041 55.000 19.24 19.24 34.12 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 3.649023 TGACAGTAACCACTATGTTGGGT 59.351 43.478 0.00 0.00 41.49 4.51
52 54 5.944007 ACTATGTTGGGTGACAAAAGGATAC 59.056 40.000 0.00 0.00 41.58 2.24
106 108 2.398252 AGACTGTGCATGTGATGGAG 57.602 50.000 0.00 0.00 0.00 3.86
117 119 2.092323 TGTGATGGAGGAGTAGACGTG 58.908 52.381 0.00 0.00 0.00 4.49
119 121 2.492484 GTGATGGAGGAGTAGACGTGTT 59.508 50.000 0.00 0.00 0.00 3.32
165 170 3.282885 GGGAAAGAAGATGTGATGGACC 58.717 50.000 0.00 0.00 0.00 4.46
177 182 1.066430 TGATGGACCAGTAGGCGTTTC 60.066 52.381 0.00 0.00 39.06 2.78
207 212 6.241645 TGTTTTTGTGGGGAAAAGAAAATGT 58.758 32.000 0.00 0.00 0.00 2.71
210 215 3.379452 TGTGGGGAAAAGAAAATGTGGT 58.621 40.909 0.00 0.00 0.00 4.16
219 224 2.767505 AGAAAATGTGGTGGACGAGAC 58.232 47.619 0.00 0.00 0.00 3.36
343 351 5.530519 TGCATCAGTTCGATTTCAAGTAC 57.469 39.130 0.00 0.00 29.21 2.73
351 359 8.085909 TCAGTTCGATTTCAAGTACAATACTCA 58.914 33.333 0.00 0.00 38.26 3.41
377 385 9.805204 ATATATACTCCATCCACCTTAAATCCT 57.195 33.333 0.00 0.00 0.00 3.24
453 470 5.503520 GCTCGTATCTTATTTTTCAACCCCG 60.504 44.000 0.00 0.00 0.00 5.73
466 483 0.698818 AACCCCGGAAATCTCAGCTT 59.301 50.000 0.73 0.00 0.00 3.74
469 486 1.614317 CCCCGGAAATCTCAGCTTTGT 60.614 52.381 0.73 0.00 0.00 2.83
474 491 5.588648 CCCGGAAATCTCAGCTTTGTATTTA 59.411 40.000 0.73 0.00 0.00 1.40
478 495 9.573133 CGGAAATCTCAGCTTTGTATTTATTTT 57.427 29.630 0.00 0.00 0.00 1.82
506 523 1.191535 AAAAATTAGCCCCGGCCTTC 58.808 50.000 0.00 0.00 43.17 3.46
517 534 2.802667 CGGCCTTCGCATCAGAACG 61.803 63.158 0.00 0.00 36.38 3.95
529 546 4.201208 CATCAGAACGATGCATACAACC 57.799 45.455 0.00 0.00 44.95 3.77
534 551 3.863424 AGAACGATGCATACAACCGTAAG 59.137 43.478 10.34 0.00 32.81 2.34
536 553 1.260561 CGATGCATACAACCGTAAGCC 59.739 52.381 0.00 0.00 40.74 4.35
576 593 8.247562 GGCACTTTCTCTCTATATATACCAGTG 58.752 40.741 0.00 0.00 0.00 3.66
608 627 2.005370 ACGTACCTTCTTCACCCTCA 57.995 50.000 0.00 0.00 0.00 3.86
613 632 1.421646 ACCTTCTTCACCCTCAGTTGG 59.578 52.381 0.00 0.00 0.00 3.77
629 652 0.746063 TTGGTTTGCCAGCTTCAGTG 59.254 50.000 0.00 0.00 46.91 3.66
632 655 1.024271 GTTTGCCAGCTTCAGTGACA 58.976 50.000 0.00 0.00 0.00 3.58
645 668 4.652175 TCAGTGACAGTAACTACGTACG 57.348 45.455 15.01 15.01 0.00 3.67
646 669 4.058124 TCAGTGACAGTAACTACGTACGT 58.942 43.478 25.98 25.98 0.00 3.57
647 670 5.227152 TCAGTGACAGTAACTACGTACGTA 58.773 41.667 25.41 25.41 0.00 3.57
822 860 3.802139 CACACGACAAGCTTCTTCAACTA 59.198 43.478 0.00 0.00 0.00 2.24
832 870 1.276622 TCTTCAACTAGCCCCCACTC 58.723 55.000 0.00 0.00 0.00 3.51
968 1037 2.288948 CCAGCCATCATCTCAGAGTAGC 60.289 54.545 0.00 0.00 0.00 3.58
1014 1083 1.306141 AAGGATGGGAGAGTCGCCA 60.306 57.895 15.36 1.51 0.00 5.69
1020 1089 2.105128 GGAGAGTCGCCATCACCG 59.895 66.667 8.20 0.00 0.00 4.94
1173 1242 7.875041 ACCTTTGCATCATGTCAGTATATACTC 59.125 37.037 12.62 3.71 33.46 2.59
1189 1376 6.651975 ATATACTCCTCCCTGTCTAAAACG 57.348 41.667 0.00 0.00 0.00 3.60
1225 1412 0.464036 TGGTACTGGCATGGTCGATC 59.536 55.000 0.00 0.00 0.00 3.69
1227 1414 1.139058 GGTACTGGCATGGTCGATCTT 59.861 52.381 0.00 0.00 0.00 2.40
1228 1415 2.205074 GTACTGGCATGGTCGATCTTG 58.795 52.381 7.19 7.19 0.00 3.02
1229 1416 0.745845 ACTGGCATGGTCGATCTTGC 60.746 55.000 24.28 24.28 37.17 4.01
1230 1417 0.463295 CTGGCATGGTCGATCTTGCT 60.463 55.000 28.95 0.00 37.76 3.91
1232 1419 0.179062 GGCATGGTCGATCTTGCTCT 60.179 55.000 28.95 0.00 37.76 4.09
1233 1420 1.661341 GCATGGTCGATCTTGCTCTT 58.339 50.000 24.83 0.00 35.67 2.85
1234 1421 1.329906 GCATGGTCGATCTTGCTCTTG 59.670 52.381 24.83 1.33 35.67 3.02
1321 3165 1.182667 ATAGCCACTGCACGTACTCA 58.817 50.000 0.00 0.00 41.13 3.41
1394 3240 5.237344 GTGGTATCATTCTTGGAGCACATAC 59.763 44.000 0.00 0.00 37.46 2.39
1395 3241 5.130975 TGGTATCATTCTTGGAGCACATACT 59.869 40.000 0.00 0.00 0.00 2.12
1396 3242 5.698545 GGTATCATTCTTGGAGCACATACTC 59.301 44.000 0.00 0.00 35.86 2.59
1448 3294 4.829872 ACTCGGTTGTATTCCCAACATA 57.170 40.909 6.41 0.00 45.16 2.29
1458 3304 6.356556 TGTATTCCCAACATAACTGATCCTG 58.643 40.000 0.00 0.00 0.00 3.86
1463 3309 4.323792 CCCAACATAACTGATCCTGTCTGT 60.324 45.833 0.00 0.00 40.30 3.41
1465 3311 4.744795 ACATAACTGATCCTGTCTGTCC 57.255 45.455 0.00 0.00 37.96 4.02
1470 3316 0.970937 TGATCCTGTCTGTCCGTCCC 60.971 60.000 0.00 0.00 0.00 4.46
1473 3319 1.304547 CCTGTCTGTCCGTCCCTCT 60.305 63.158 0.00 0.00 0.00 3.69
1474 3320 0.900647 CCTGTCTGTCCGTCCCTCTT 60.901 60.000 0.00 0.00 0.00 2.85
1475 3321 0.244994 CTGTCTGTCCGTCCCTCTTG 59.755 60.000 0.00 0.00 0.00 3.02
1476 3322 0.469331 TGTCTGTCCGTCCCTCTTGT 60.469 55.000 0.00 0.00 0.00 3.16
1477 3323 0.244178 GTCTGTCCGTCCCTCTTGTC 59.756 60.000 0.00 0.00 0.00 3.18
1478 3324 0.112606 TCTGTCCGTCCCTCTTGTCT 59.887 55.000 0.00 0.00 0.00 3.41
1479 3325 0.528470 CTGTCCGTCCCTCTTGTCTC 59.472 60.000 0.00 0.00 0.00 3.36
1480 3326 0.112606 TGTCCGTCCCTCTTGTCTCT 59.887 55.000 0.00 0.00 0.00 3.10
1481 3327 1.353358 TGTCCGTCCCTCTTGTCTCTA 59.647 52.381 0.00 0.00 0.00 2.43
1482 3328 2.025226 TGTCCGTCCCTCTTGTCTCTAT 60.025 50.000 0.00 0.00 0.00 1.98
1484 3330 2.510382 TCCGTCCCTCTTGTCTCTATCT 59.490 50.000 0.00 0.00 0.00 1.98
1485 3331 3.715315 TCCGTCCCTCTTGTCTCTATCTA 59.285 47.826 0.00 0.00 0.00 1.98
1486 3332 4.351407 TCCGTCCCTCTTGTCTCTATCTAT 59.649 45.833 0.00 0.00 0.00 1.98
1488 3334 5.514136 CCGTCCCTCTTGTCTCTATCTATCT 60.514 48.000 0.00 0.00 0.00 1.98
1547 3532 4.859798 CGTTTCTCTACTTCATGGTGAGTC 59.140 45.833 0.00 0.00 0.00 3.36
1548 3533 5.336055 CGTTTCTCTACTTCATGGTGAGTCT 60.336 44.000 0.00 0.00 0.00 3.24
1549 3534 6.127980 CGTTTCTCTACTTCATGGTGAGTCTA 60.128 42.308 0.00 0.00 0.00 2.59
1559 3544 3.961480 TGGTGAGTCTACCTTCACATG 57.039 47.619 11.48 0.00 41.43 3.21
1569 3554 1.259142 CCTTCACATGCCCATGCCAA 61.259 55.000 8.11 1.19 42.39 4.52
1573 3558 1.629353 TCACATGCCCATGCCAATTTT 59.371 42.857 8.11 0.00 42.39 1.82
1575 3560 1.910671 ACATGCCCATGCCAATTTTCT 59.089 42.857 8.11 0.00 42.39 2.52
1577 3562 2.766345 TGCCCATGCCAATTTTCTTC 57.234 45.000 0.00 0.00 36.33 2.87
1578 3563 1.976404 TGCCCATGCCAATTTTCTTCA 59.024 42.857 0.00 0.00 36.33 3.02
1583 3589 4.873827 CCCATGCCAATTTTCTTCATTCAG 59.126 41.667 0.00 0.00 0.00 3.02
1585 3591 6.351202 CCCATGCCAATTTTCTTCATTCAGTA 60.351 38.462 0.00 0.00 0.00 2.74
1641 3846 5.163237 GCATAATAGTCCACCTCACCCTAAA 60.163 44.000 0.00 0.00 0.00 1.85
1683 3899 0.037326 TCGAACTGCCCAGACATGTC 60.037 55.000 18.47 18.47 0.00 3.06
1689 3905 1.745489 GCCCAGACATGTCCGGTTC 60.745 63.158 23.55 12.97 0.00 3.62
1698 3914 1.065102 CATGTCCGGTTCGTCGATAGT 59.935 52.381 0.00 0.00 37.40 2.12
1700 3916 1.541147 TGTCCGGTTCGTCGATAGTTT 59.459 47.619 0.00 0.00 37.40 2.66
1702 3918 3.190327 TGTCCGGTTCGTCGATAGTTTAA 59.810 43.478 0.00 0.00 37.40 1.52
1703 3919 3.788163 GTCCGGTTCGTCGATAGTTTAAG 59.212 47.826 0.00 0.00 37.40 1.85
1704 3920 3.689161 TCCGGTTCGTCGATAGTTTAAGA 59.311 43.478 0.00 0.00 37.40 2.10
1705 3921 4.336433 TCCGGTTCGTCGATAGTTTAAGAT 59.664 41.667 0.00 0.00 37.40 2.40
1706 3922 5.527214 TCCGGTTCGTCGATAGTTTAAGATA 59.473 40.000 0.00 0.00 37.40 1.98
1707 3923 5.622856 CCGGTTCGTCGATAGTTTAAGATAC 59.377 44.000 0.00 0.00 37.40 2.24
1710 3926 6.855403 GGTTCGTCGATAGTTTAAGATACTCC 59.145 42.308 0.00 0.00 37.40 3.85
1711 3927 6.551385 TCGTCGATAGTTTAAGATACTCCC 57.449 41.667 0.00 0.00 37.40 4.30
1712 3928 6.294473 TCGTCGATAGTTTAAGATACTCCCT 58.706 40.000 0.00 0.00 37.40 4.20
1713 3929 6.426328 TCGTCGATAGTTTAAGATACTCCCTC 59.574 42.308 0.00 0.00 37.40 4.30
1714 3930 6.427547 CGTCGATAGTTTAAGATACTCCCTCT 59.572 42.308 0.00 0.00 37.40 3.69
1715 3931 7.571613 CGTCGATAGTTTAAGATACTCCCTCTG 60.572 44.444 0.00 0.00 37.40 3.35
1716 3932 7.229106 GTCGATAGTTTAAGATACTCCCTCTGT 59.771 40.741 0.00 0.00 37.40 3.41
1717 3933 7.444792 TCGATAGTTTAAGATACTCCCTCTGTC 59.555 40.741 0.00 0.00 37.40 3.51
1718 3934 7.308710 CGATAGTTTAAGATACTCCCTCTGTCC 60.309 44.444 0.00 0.00 0.00 4.02
1719 3935 4.963628 AGTTTAAGATACTCCCTCTGTCCC 59.036 45.833 0.00 0.00 0.00 4.46
1720 3936 4.620086 TTAAGATACTCCCTCTGTCCCA 57.380 45.455 0.00 0.00 0.00 4.37
1721 3937 3.715648 AAGATACTCCCTCTGTCCCAT 57.284 47.619 0.00 0.00 0.00 4.00
1722 3938 4.834406 AAGATACTCCCTCTGTCCCATA 57.166 45.455 0.00 0.00 0.00 2.74
1723 3939 4.834406 AGATACTCCCTCTGTCCCATAA 57.166 45.455 0.00 0.00 0.00 1.90
1724 3940 5.361630 AGATACTCCCTCTGTCCCATAAT 57.638 43.478 0.00 0.00 0.00 1.28
1725 3941 6.485388 AGATACTCCCTCTGTCCCATAATA 57.515 41.667 0.00 0.00 0.00 0.98
1726 3942 7.062584 AGATACTCCCTCTGTCCCATAATAT 57.937 40.000 0.00 0.00 0.00 1.28
1727 3943 8.188501 AGATACTCCCTCTGTCCCATAATATA 57.811 38.462 0.00 0.00 0.00 0.86
1728 3944 8.633724 AGATACTCCCTCTGTCCCATAATATAA 58.366 37.037 0.00 0.00 0.00 0.98
1729 3945 8.846423 ATACTCCCTCTGTCCCATAATATAAG 57.154 38.462 0.00 0.00 0.00 1.73
1730 3946 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
1731 3947 6.726764 ACTCCCTCTGTCCCATAATATAAGAC 59.273 42.308 0.00 0.00 0.00 3.01
1732 3948 5.715279 TCCCTCTGTCCCATAATATAAGACG 59.285 44.000 0.00 0.00 0.00 4.18
1733 3949 5.411781 CCTCTGTCCCATAATATAAGACGC 58.588 45.833 0.00 0.00 0.00 5.19
1734 3950 5.186021 CCTCTGTCCCATAATATAAGACGCT 59.814 44.000 0.00 0.00 0.00 5.07
1735 3951 6.268825 TCTGTCCCATAATATAAGACGCTC 57.731 41.667 0.00 0.00 0.00 5.03
1736 3952 6.010850 TCTGTCCCATAATATAAGACGCTCT 58.989 40.000 0.00 0.00 0.00 4.09
1737 3953 6.493802 TCTGTCCCATAATATAAGACGCTCTT 59.506 38.462 5.74 5.74 40.35 2.85
1738 3954 6.455647 TGTCCCATAATATAAGACGCTCTTG 58.544 40.000 9.58 0.00 37.29 3.02
1739 3955 6.041637 TGTCCCATAATATAAGACGCTCTTGT 59.958 38.462 9.58 6.43 37.29 3.16
1740 3956 7.231925 TGTCCCATAATATAAGACGCTCTTGTA 59.768 37.037 9.58 8.04 37.29 2.41
1741 3957 8.086522 GTCCCATAATATAAGACGCTCTTGTAA 58.913 37.037 9.58 0.00 37.29 2.41
1774 3990 4.846779 TTACCTTTTTGCCAGTAAGCTG 57.153 40.909 0.00 0.00 42.22 4.24
1790 4006 7.043192 CCAGTAAGCTGTTTTCATCTGTTTTTG 60.043 37.037 0.00 0.00 41.02 2.44
1791 4007 5.723492 AAGCTGTTTTCATCTGTTTTTGC 57.277 34.783 0.00 0.00 0.00 3.68
1792 4008 4.122046 AGCTGTTTTCATCTGTTTTTGCC 58.878 39.130 0.00 0.00 0.00 4.52
1793 4009 3.870419 GCTGTTTTCATCTGTTTTTGCCA 59.130 39.130 0.00 0.00 0.00 4.92
1794 4010 4.260334 GCTGTTTTCATCTGTTTTTGCCAC 60.260 41.667 0.00 0.00 0.00 5.01
1795 4011 5.083533 TGTTTTCATCTGTTTTTGCCACT 57.916 34.783 0.00 0.00 0.00 4.00
1796 4012 5.486526 TGTTTTCATCTGTTTTTGCCACTT 58.513 33.333 0.00 0.00 0.00 3.16
1797 4013 5.936956 TGTTTTCATCTGTTTTTGCCACTTT 59.063 32.000 0.00 0.00 0.00 2.66
1798 4014 6.429385 TGTTTTCATCTGTTTTTGCCACTTTT 59.571 30.769 0.00 0.00 0.00 2.27
1799 4015 7.040823 TGTTTTCATCTGTTTTTGCCACTTTTT 60.041 29.630 0.00 0.00 0.00 1.94
1800 4016 8.447053 GTTTTCATCTGTTTTTGCCACTTTTTA 58.553 29.630 0.00 0.00 0.00 1.52
1801 4017 8.553459 TTTCATCTGTTTTTGCCACTTTTTAA 57.447 26.923 0.00 0.00 0.00 1.52
1802 4018 8.729805 TTCATCTGTTTTTGCCACTTTTTAAT 57.270 26.923 0.00 0.00 0.00 1.40
1803 4019 8.140677 TCATCTGTTTTTGCCACTTTTTAATG 57.859 30.769 0.00 0.00 0.00 1.90
1804 4020 7.768120 TCATCTGTTTTTGCCACTTTTTAATGT 59.232 29.630 0.00 0.00 0.00 2.71
1805 4021 7.913674 TCTGTTTTTGCCACTTTTTAATGTT 57.086 28.000 0.00 0.00 0.00 2.71
1806 4022 7.969314 TCTGTTTTTGCCACTTTTTAATGTTC 58.031 30.769 0.00 0.00 0.00 3.18
1807 4023 6.766084 TGTTTTTGCCACTTTTTAATGTTCG 58.234 32.000 0.00 0.00 0.00 3.95
1808 4024 5.975410 TTTTGCCACTTTTTAATGTTCGG 57.025 34.783 0.00 0.00 0.00 4.30
1809 4025 4.920640 TTGCCACTTTTTAATGTTCGGA 57.079 36.364 0.00 0.00 0.00 4.55
1810 4026 4.231718 TGCCACTTTTTAATGTTCGGAC 57.768 40.909 0.00 0.00 0.00 4.79
1811 4027 3.231160 GCCACTTTTTAATGTTCGGACG 58.769 45.455 0.00 0.00 0.00 4.79
1812 4028 3.817238 CCACTTTTTAATGTTCGGACGG 58.183 45.455 0.00 0.00 0.00 4.79
1813 4029 3.499157 CCACTTTTTAATGTTCGGACGGA 59.501 43.478 0.00 0.00 0.00 4.69
1814 4030 4.155280 CCACTTTTTAATGTTCGGACGGAT 59.845 41.667 0.00 0.00 0.00 4.18
1815 4031 5.321516 CACTTTTTAATGTTCGGACGGATC 58.678 41.667 0.00 0.00 0.00 3.36
1816 4032 4.393990 ACTTTTTAATGTTCGGACGGATCC 59.606 41.667 0.00 0.00 42.28 3.36
1824 4040 2.499205 GGACGGATCCGCATGTCA 59.501 61.111 33.62 0.00 44.19 3.58
1825 4041 1.592669 GGACGGATCCGCATGTCAG 60.593 63.158 33.62 5.72 44.19 3.51
1826 4042 1.141881 GACGGATCCGCATGTCAGT 59.858 57.895 33.62 11.98 44.19 3.41
1827 4043 1.148157 GACGGATCCGCATGTCAGTG 61.148 60.000 33.62 4.14 44.19 3.66
1828 4044 1.141665 CGGATCCGCATGTCAGTGA 59.858 57.895 23.37 0.00 0.00 3.41
1829 4045 0.249615 CGGATCCGCATGTCAGTGAT 60.250 55.000 23.37 0.00 0.00 3.06
1830 4046 1.000274 CGGATCCGCATGTCAGTGATA 60.000 52.381 23.37 0.00 0.00 2.15
1831 4047 2.408050 GGATCCGCATGTCAGTGATAC 58.592 52.381 0.00 0.00 0.00 2.24
1832 4048 2.224042 GGATCCGCATGTCAGTGATACA 60.224 50.000 0.00 0.00 0.00 2.29
1833 4049 3.457234 GATCCGCATGTCAGTGATACAA 58.543 45.455 0.00 0.00 0.00 2.41
1834 4050 3.326836 TCCGCATGTCAGTGATACAAA 57.673 42.857 0.00 0.00 0.00 2.83
1835 4051 3.000041 TCCGCATGTCAGTGATACAAAC 59.000 45.455 0.00 0.00 0.00 2.93
1836 4052 2.095853 CCGCATGTCAGTGATACAAACC 59.904 50.000 0.00 0.00 0.00 3.27
1837 4053 2.222796 CGCATGTCAGTGATACAAACCG 60.223 50.000 0.00 0.00 0.00 4.44
1838 4054 3.000041 GCATGTCAGTGATACAAACCGA 59.000 45.455 0.00 0.00 0.00 4.69
1839 4055 3.062639 GCATGTCAGTGATACAAACCGAG 59.937 47.826 0.00 0.00 0.00 4.63
1842 4058 2.993899 GTCAGTGATACAAACCGAGTGG 59.006 50.000 0.00 0.00 42.84 4.00
1844 4060 1.084289 GTGATACAAACCGAGTGGCC 58.916 55.000 0.00 0.00 39.70 5.36
1867 4083 2.596904 AGCAGATGCCATGCAAAATC 57.403 45.000 0.14 0.00 46.31 2.17
1881 4097 5.456548 TGCAAAATCCAGTGGCATATATG 57.543 39.130 3.51 8.45 0.00 1.78
1893 4109 4.453819 GTGGCATATATGAAGGAGAGCAAC 59.546 45.833 17.10 0.00 0.00 4.17
1938 4154 8.925700 CACCAGCCAACTATTCTTTTTATTTTC 58.074 33.333 0.00 0.00 0.00 2.29
1991 4207 0.771755 AACTCCTTTCCCTGTGTCCC 59.228 55.000 0.00 0.00 0.00 4.46
1997 4213 2.487625 CCTTTCCCTGTGTCCCGTTTTA 60.488 50.000 0.00 0.00 0.00 1.52
2009 4225 4.019501 TGTCCCGTTTTAACAATAGGCCTA 60.020 41.667 16.60 16.60 0.00 3.93
2010 4226 5.128205 GTCCCGTTTTAACAATAGGCCTAT 58.872 41.667 20.16 20.16 0.00 2.57
2011 4227 5.591472 GTCCCGTTTTAACAATAGGCCTATT 59.409 40.000 29.02 29.02 36.27 1.73
2012 4228 5.824097 TCCCGTTTTAACAATAGGCCTATTC 59.176 40.000 31.28 18.55 33.79 1.75
2013 4229 5.009310 CCCGTTTTAACAATAGGCCTATTCC 59.991 44.000 31.28 13.88 33.79 3.01
2014 4230 5.591067 CCGTTTTAACAATAGGCCTATTCCA 59.409 40.000 31.28 17.88 33.79 3.53
2015 4231 6.238648 CCGTTTTAACAATAGGCCTATTCCAG 60.239 42.308 31.28 23.06 33.79 3.86
2016 4232 6.317893 CGTTTTAACAATAGGCCTATTCCAGT 59.682 38.462 31.28 23.65 33.79 4.00
2017 4233 7.148137 CGTTTTAACAATAGGCCTATTCCAGTT 60.148 37.037 31.28 29.75 33.79 3.16
2018 4234 9.181061 GTTTTAACAATAGGCCTATTCCAGTTA 57.819 33.333 31.28 28.89 33.79 2.24
2019 4235 8.974060 TTTAACAATAGGCCTATTCCAGTTAG 57.026 34.615 31.28 21.15 33.79 2.34
2020 4236 6.576778 AACAATAGGCCTATTCCAGTTAGT 57.423 37.500 31.28 21.74 33.79 2.24
2021 4237 7.685849 AACAATAGGCCTATTCCAGTTAGTA 57.314 36.000 31.28 0.00 33.79 1.82
2022 4238 7.304497 ACAATAGGCCTATTCCAGTTAGTAG 57.696 40.000 31.28 19.27 33.79 2.57
2023 4239 6.844917 ACAATAGGCCTATTCCAGTTAGTAGT 59.155 38.462 31.28 19.84 33.79 2.73
2024 4240 7.347485 ACAATAGGCCTATTCCAGTTAGTAGTT 59.653 37.037 31.28 7.31 33.79 2.24
2025 4241 7.932683 ATAGGCCTATTCCAGTTAGTAGTTT 57.067 36.000 20.16 0.00 0.00 2.66
2026 4242 6.638021 AGGCCTATTCCAGTTAGTAGTTTT 57.362 37.500 1.29 0.00 0.00 2.43
2027 4243 7.029053 AGGCCTATTCCAGTTAGTAGTTTTT 57.971 36.000 1.29 0.00 0.00 1.94
2052 4268 8.712285 TTTGAAACGGATATTCCAGTTAGTAG 57.288 34.615 0.00 0.00 35.91 2.57
2059 4275 9.139734 ACGGATATTCCAGTTAGTAGTTATTCA 57.860 33.333 0.00 0.00 35.91 2.57
2066 4282 7.889469 TCCAGTTAGTAGTTATTCACTCGTTT 58.111 34.615 0.00 0.00 36.88 3.60
2097 4313 6.667414 CCCTATGATCTGCTATCTTCCTAAGT 59.333 42.308 0.00 0.00 0.00 2.24
2379 4602 9.282247 CTCATGCATACTTTGTTTCAGAATAAC 57.718 33.333 0.00 0.00 0.00 1.89
2381 4604 6.083630 TGCATACTTTGTTTCAGAATAACGC 58.916 36.000 0.00 0.00 0.00 4.84
2554 4777 4.349048 TGTGATGATATCTTCCCCTCCAAG 59.651 45.833 14.26 0.00 0.00 3.61
2581 4804 8.859156 CGGATGAAAATTTACCACAACATTTAG 58.141 33.333 0.00 0.00 0.00 1.85
2754 4978 5.885912 GGATTTCTAGCACCAATCAAGGTAA 59.114 40.000 0.00 0.00 40.77 2.85
2796 5020 1.197721 GGACAGTTGCAGGAATGAACG 59.802 52.381 0.00 0.00 0.00 3.95
2956 5180 9.362539 CGACATAAAACACTTAACTACCTATGT 57.637 33.333 0.00 0.00 31.84 2.29
3085 5327 7.223971 TCAGGTAATATCACAAGCGTTAATCAC 59.776 37.037 0.00 0.00 0.00 3.06
3173 5417 5.126869 ACACATTTTCCATGACAAGTCAACA 59.873 36.000 7.02 0.00 43.58 3.33
3205 5449 8.324191 AGGTACTCATTTCTCCTATCATTGAA 57.676 34.615 0.00 0.00 0.00 2.69
3206 5450 8.207545 AGGTACTCATTTCTCCTATCATTGAAC 58.792 37.037 0.00 0.00 0.00 3.18
3217 5461 8.762645 TCTCCTATCATTGAACTGTTCATACTT 58.237 33.333 22.60 11.58 39.84 2.24
3368 5612 6.202954 GGTATGTACAACCTGAACTATGCATC 59.797 42.308 0.19 0.00 33.97 3.91
3369 5613 5.420725 TGTACAACCTGAACTATGCATCT 57.579 39.130 0.19 0.00 0.00 2.90
3380 5624 9.710900 CCTGAACTATGCATCTTGTATATGTAA 57.289 33.333 0.19 0.00 0.00 2.41
3418 5662 9.926158 TTTGTTTGAATGCTATGTATTCACATT 57.074 25.926 9.84 0.00 42.98 2.71
3453 5697 0.303493 AAACACTACACAAGCACGCG 59.697 50.000 3.53 3.53 0.00 6.01
3466 5710 1.052287 GCACGCGAAGTTTGAAATGG 58.948 50.000 15.93 0.00 0.00 3.16
4003 6248 5.458041 AGCTGTAAACATGCAATCTGTTT 57.542 34.783 18.14 18.14 45.89 2.83
4111 6360 5.920840 GCATCGCATCTGTGAGTTACTAATA 59.079 40.000 0.00 0.00 38.03 0.98
4147 6396 9.474920 TTCTTTATGCCAATTTCAGTTTACTTG 57.525 29.630 0.00 0.00 0.00 3.16
4359 6608 7.201652 GGTTTAAGCCATCTTTACTTCTAGCTG 60.202 40.741 3.05 0.00 33.85 4.24
4503 6763 4.003648 CCGGCACTTCTCTTCTACAAAAT 58.996 43.478 0.00 0.00 0.00 1.82
4592 6853 8.918658 CAGAAACAATATTTGTCCAATTCACTG 58.081 33.333 0.00 0.00 44.59 3.66
4689 6950 4.634443 GGAATAGCCACAACGTTAATGTCT 59.366 41.667 0.00 0.11 36.34 3.41
5080 7348 3.573772 CTCGTGGGCACAGAAGCGA 62.574 63.158 0.00 0.00 34.64 4.93
5109 7377 3.057526 GCAGCGTTCTTTCCAGGTAAAAT 60.058 43.478 0.00 0.00 0.00 1.82
5110 7378 4.475944 CAGCGTTCTTTCCAGGTAAAATG 58.524 43.478 0.00 0.00 0.00 2.32
5129 7398 2.790433 TGGTGCAGTTCCAGGAAATAC 58.210 47.619 2.45 0.00 0.00 1.89
5141 7410 5.263599 TCCAGGAAATACATCAATTGCAGT 58.736 37.500 0.00 4.26 0.00 4.40
5151 7420 9.618890 AATACATCAATTGCAGTATCACTAGTT 57.381 29.630 17.38 4.58 0.00 2.24
5312 7581 3.350219 TTCCATAGAACTGAACCAGGC 57.650 47.619 0.00 0.00 35.51 4.85
5369 7638 7.165483 GTGTATCACTGTCGCTTTGTATAGTAC 59.835 40.741 0.00 0.00 0.00 2.73
5370 7639 5.632244 TCACTGTCGCTTTGTATAGTACA 57.368 39.130 0.00 0.00 36.79 2.90
5481 7750 3.170362 CCTTTCCTGGCAGTCCCA 58.830 61.111 14.43 0.00 42.79 4.37
5647 7926 2.571212 TGTTGGCACTGTGACCTAAAG 58.429 47.619 11.84 0.00 0.00 1.85
5690 7974 1.089920 GCCATCGATTGCAGTCTTGT 58.910 50.000 16.05 0.00 0.00 3.16
5701 7985 1.661112 GCAGTCTTGTATTGCTCCGTC 59.339 52.381 0.00 0.00 37.81 4.79
5749 8055 7.525165 ACGTAGTAAGGAGGAATAGAGGTAAT 58.475 38.462 0.00 0.00 41.94 1.89
5802 8113 4.660938 GCCGTTTGCCCTCACCCT 62.661 66.667 0.00 0.00 0.00 4.34
5804 8115 3.365265 CGTTTGCCCTCACCCTGC 61.365 66.667 0.00 0.00 0.00 4.85
5871 8197 3.853330 CGGGTGCTGCGATTGACG 61.853 66.667 0.00 0.00 45.66 4.35
5949 8286 1.603455 GGTGTGGTCATGGTGGTGG 60.603 63.158 0.00 0.00 0.00 4.61
5950 8287 1.150536 GTGTGGTCATGGTGGTGGT 59.849 57.895 0.00 0.00 0.00 4.16
5951 8288 1.150308 TGTGGTCATGGTGGTGGTG 59.850 57.895 0.00 0.00 0.00 4.17
5979 8316 2.355716 GGATTGGATCTTCGGGTTGTGA 60.356 50.000 0.00 0.00 0.00 3.58
5986 8323 3.604875 TCTTCGGGTTGTGATTAGGAC 57.395 47.619 0.00 0.00 0.00 3.85
5987 8324 3.170717 TCTTCGGGTTGTGATTAGGACT 58.829 45.455 0.00 0.00 0.00 3.85
5988 8325 3.581332 TCTTCGGGTTGTGATTAGGACTT 59.419 43.478 0.00 0.00 0.00 3.01
5989 8326 4.773674 TCTTCGGGTTGTGATTAGGACTTA 59.226 41.667 0.00 0.00 0.00 2.24
5992 8329 3.449737 CGGGTTGTGATTAGGACTTAGGA 59.550 47.826 0.00 0.00 0.00 2.94
5994 8331 4.715297 GGGTTGTGATTAGGACTTAGGAGA 59.285 45.833 0.00 0.00 0.00 3.71
5995 8332 5.189145 GGGTTGTGATTAGGACTTAGGAGAA 59.811 44.000 0.00 0.00 0.00 2.87
5997 8334 6.342111 GTTGTGATTAGGACTTAGGAGAAGG 58.658 44.000 0.00 0.00 0.00 3.46
5999 8336 4.345547 GTGATTAGGACTTAGGAGAAGGGG 59.654 50.000 0.00 0.00 0.00 4.79
6000 8337 2.473576 TAGGACTTAGGAGAAGGGGC 57.526 55.000 0.00 0.00 0.00 5.80
6001 8338 0.417841 AGGACTTAGGAGAAGGGGCA 59.582 55.000 0.00 0.00 0.00 5.36
6002 8339 0.833949 GGACTTAGGAGAAGGGGCAG 59.166 60.000 0.00 0.00 0.00 4.85
6003 8340 1.622725 GGACTTAGGAGAAGGGGCAGA 60.623 57.143 0.00 0.00 0.00 4.26
6004 8341 1.760029 GACTTAGGAGAAGGGGCAGAG 59.240 57.143 0.00 0.00 0.00 3.35
6005 8342 0.467804 CTTAGGAGAAGGGGCAGAGC 59.532 60.000 0.00 0.00 0.00 4.09
6006 8343 1.330655 TTAGGAGAAGGGGCAGAGCG 61.331 60.000 0.00 0.00 0.00 5.03
6007 8344 4.847444 GGAGAAGGGGCAGAGCGC 62.847 72.222 0.00 0.00 40.84 5.92
6008 8345 3.780173 GAGAAGGGGCAGAGCGCT 61.780 66.667 11.27 11.27 41.33 5.92
6068 8405 2.925170 ACGGCACTCCTCCAGCTT 60.925 61.111 0.00 0.00 0.00 3.74
6098 8436 4.524318 CTTCATACCCGCCGCGGT 62.524 66.667 29.21 19.30 46.80 5.68
6154 8500 4.755614 GCCGCTCGTCGAGTCGTT 62.756 66.667 25.95 0.00 41.67 3.85
6180 8526 4.675029 CCGTCCGACCACGCCTTT 62.675 66.667 0.00 0.00 38.52 3.11
6182 8528 2.741211 GTCCGACCACGCCTTTCC 60.741 66.667 0.00 0.00 38.29 3.13
6183 8529 4.367023 TCCGACCACGCCTTTCCG 62.367 66.667 0.00 0.00 38.29 4.30
6250 8638 0.033366 AAACGATGGGCTTTTGTGGC 59.967 50.000 0.00 0.00 0.00 5.01
6257 8645 1.829456 GGCTTTTGTGGCCCAAAGT 59.171 52.632 15.92 0.00 43.63 2.66
6263 8651 0.541764 TTGTGGCCCAAAGTCCCATC 60.542 55.000 0.00 0.00 0.00 3.51
6310 8698 2.851263 TATGGACGCCAGTTTTCACT 57.149 45.000 4.90 0.00 36.75 3.41
6322 8710 6.475402 CGCCAGTTTTCACTAAAATCTTGTTT 59.525 34.615 0.00 0.00 36.96 2.83
6323 8711 7.515059 CGCCAGTTTTCACTAAAATCTTGTTTG 60.515 37.037 0.00 0.00 36.96 2.93
6324 8712 7.277760 GCCAGTTTTCACTAAAATCTTGTTTGT 59.722 33.333 0.00 0.00 36.96 2.83
6325 8713 8.807581 CCAGTTTTCACTAAAATCTTGTTTGTC 58.192 33.333 0.00 0.00 36.96 3.18
6326 8714 9.573133 CAGTTTTCACTAAAATCTTGTTTGTCT 57.427 29.630 0.00 0.00 36.96 3.41
6327 8715 9.788960 AGTTTTCACTAAAATCTTGTTTGTCTC 57.211 29.630 0.00 0.00 36.96 3.36
6375 8763 6.606234 TTTTTAACATCAGTACAGACGCAA 57.394 33.333 0.00 0.00 0.00 4.85
6377 8765 1.714794 ACATCAGTACAGACGCAAGC 58.285 50.000 0.00 0.00 45.62 4.01
6378 8766 0.642291 CATCAGTACAGACGCAAGCG 59.358 55.000 13.50 13.50 46.03 4.68
6379 8767 1.078759 ATCAGTACAGACGCAAGCGC 61.079 55.000 15.09 0.00 44.19 5.92
6380 8768 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
6381 8769 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
6382 8770 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
6383 8771 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
6384 8772 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
6385 8773 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
6386 8774 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
6387 8775 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
6388 8776 0.042708 GACGCAAGCGCTCATACATG 60.043 55.000 12.06 5.02 44.19 3.21
6389 8777 1.368493 CGCAAGCGCTCATACATGC 60.368 57.895 12.06 15.44 35.30 4.06
6390 8778 1.769098 CGCAAGCGCTCATACATGCT 61.769 55.000 22.84 0.00 39.89 3.79
6391 8779 0.041488 GCAAGCGCTCATACATGCTC 60.041 55.000 19.50 0.00 36.49 4.26
6392 8780 0.231534 CAAGCGCTCATACATGCTCG 59.768 55.000 12.06 0.00 36.49 5.03
6393 8781 1.493950 AAGCGCTCATACATGCTCGC 61.494 55.000 12.06 15.28 43.32 5.03
6394 8782 2.239812 GCGCTCATACATGCTCGCA 61.240 57.895 17.03 0.00 42.89 5.10
6395 8783 1.563435 GCGCTCATACATGCTCGCAT 61.563 55.000 17.03 0.00 42.89 4.73
6396 8784 1.701704 CGCTCATACATGCTCGCATA 58.298 50.000 3.79 0.00 34.91 3.14
6397 8785 1.388093 CGCTCATACATGCTCGCATAC 59.612 52.381 3.79 0.00 34.91 2.39
6398 8786 2.407090 GCTCATACATGCTCGCATACA 58.593 47.619 3.79 0.00 34.91 2.29
6399 8787 2.156504 GCTCATACATGCTCGCATACAC 59.843 50.000 3.79 0.00 34.91 2.90
6400 8788 3.646946 CTCATACATGCTCGCATACACT 58.353 45.455 3.79 0.00 34.91 3.55
6401 8789 3.642705 TCATACATGCTCGCATACACTC 58.357 45.455 3.79 0.00 34.91 3.51
6402 8790 3.068024 TCATACATGCTCGCATACACTCA 59.932 43.478 3.79 0.00 34.91 3.41
6403 8791 1.645034 ACATGCTCGCATACACTCAC 58.355 50.000 3.79 0.00 34.91 3.51
6404 8792 0.933097 CATGCTCGCATACACTCACC 59.067 55.000 3.79 0.00 34.91 4.02
6405 8793 0.179073 ATGCTCGCATACACTCACCC 60.179 55.000 1.93 0.00 34.49 4.61
6406 8794 1.521681 GCTCGCATACACTCACCCC 60.522 63.158 0.00 0.00 0.00 4.95
6407 8795 1.961180 GCTCGCATACACTCACCCCT 61.961 60.000 0.00 0.00 0.00 4.79
6408 8796 1.399714 CTCGCATACACTCACCCCTA 58.600 55.000 0.00 0.00 0.00 3.53
6409 8797 1.964223 CTCGCATACACTCACCCCTAT 59.036 52.381 0.00 0.00 0.00 2.57
6410 8798 1.686587 TCGCATACACTCACCCCTATG 59.313 52.381 0.00 0.00 0.00 2.23
6411 8799 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
6412 8800 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
6413 8801 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
6414 8802 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
6415 8803 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
6416 8804 0.806102 CACTCACCCCTATGAACGCG 60.806 60.000 3.53 3.53 0.00 6.01
6417 8805 1.883084 CTCACCCCTATGAACGCGC 60.883 63.158 5.73 0.00 0.00 6.86
6418 8806 3.261951 CACCCCTATGAACGCGCG 61.262 66.667 30.96 30.96 0.00 6.86
6432 8820 3.913573 CGCGCGCACACATCCTAC 61.914 66.667 32.61 0.00 0.00 3.18
6433 8821 3.564027 GCGCGCACACATCCTACC 61.564 66.667 29.10 0.00 0.00 3.18
6434 8822 2.890474 CGCGCACACATCCTACCC 60.890 66.667 8.75 0.00 0.00 3.69
6435 8823 2.513897 GCGCACACATCCTACCCC 60.514 66.667 0.30 0.00 0.00 4.95
6436 8824 3.031417 GCGCACACATCCTACCCCT 62.031 63.158 0.30 0.00 0.00 4.79
6437 8825 1.682451 GCGCACACATCCTACCCCTA 61.682 60.000 0.30 0.00 0.00 3.53
6438 8826 1.048601 CGCACACATCCTACCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
6439 8827 1.270305 CGCACACATCCTACCCCTATG 60.270 57.143 0.00 0.00 0.00 2.23
6440 8828 2.047061 GCACACATCCTACCCCTATGA 58.953 52.381 0.00 0.00 0.00 2.15
6441 8829 2.037772 GCACACATCCTACCCCTATGAG 59.962 54.545 0.00 0.00 0.00 2.90
6442 8830 2.037772 CACACATCCTACCCCTATGAGC 59.962 54.545 0.00 0.00 0.00 4.26
6443 8831 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
6444 8832 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
6445 8833 1.625818 CATCCTACCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
6446 8834 0.941963 TCCTACCCCTATGAGCACCT 59.058 55.000 0.00 0.00 0.00 4.00
6447 8835 1.294068 TCCTACCCCTATGAGCACCTT 59.706 52.381 0.00 0.00 0.00 3.50
6448 8836 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
6449 8837 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
6450 8838 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
6451 8839 0.390860 CCCCTATGAGCACCTTCGAG 59.609 60.000 0.00 0.00 0.00 4.04
6452 8840 1.403814 CCCTATGAGCACCTTCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
6453 8841 1.757118 CCCTATGAGCACCTTCGAGAA 59.243 52.381 0.00 0.00 0.00 2.87
6454 8842 2.168521 CCCTATGAGCACCTTCGAGAAA 59.831 50.000 0.00 0.00 0.00 2.52
6455 8843 3.181461 CCCTATGAGCACCTTCGAGAAAT 60.181 47.826 0.00 0.00 0.00 2.17
6456 8844 4.446371 CCTATGAGCACCTTCGAGAAATT 58.554 43.478 0.00 0.00 0.00 1.82
6457 8845 4.272018 CCTATGAGCACCTTCGAGAAATTG 59.728 45.833 0.00 0.00 0.00 2.32
6458 8846 3.401033 TGAGCACCTTCGAGAAATTGA 57.599 42.857 0.00 0.00 0.00 2.57
6459 8847 3.329386 TGAGCACCTTCGAGAAATTGAG 58.671 45.455 0.00 0.00 0.00 3.02
6460 8848 2.079925 AGCACCTTCGAGAAATTGAGC 58.920 47.619 0.00 0.00 0.00 4.26
6461 8849 1.131315 GCACCTTCGAGAAATTGAGCC 59.869 52.381 0.00 0.00 0.00 4.70
6462 8850 1.394917 CACCTTCGAGAAATTGAGCCG 59.605 52.381 0.00 0.00 0.00 5.52
6463 8851 1.009829 CCTTCGAGAAATTGAGCCGG 58.990 55.000 0.00 0.00 0.00 6.13
6464 8852 1.676014 CCTTCGAGAAATTGAGCCGGT 60.676 52.381 1.90 0.00 0.00 5.28
6465 8853 2.418197 CCTTCGAGAAATTGAGCCGGTA 60.418 50.000 1.90 0.00 0.00 4.02
6466 8854 2.288961 TCGAGAAATTGAGCCGGTAC 57.711 50.000 1.90 0.00 0.00 3.34
6485 8873 6.636666 GGTACGTCATCTTGAAATTTACGA 57.363 37.500 12.83 1.18 33.40 3.43
6486 8874 7.052565 GGTACGTCATCTTGAAATTTACGAA 57.947 36.000 12.83 0.00 33.40 3.85
6487 8875 7.171434 GGTACGTCATCTTGAAATTTACGAAG 58.829 38.462 12.83 6.19 33.40 3.79
6489 8877 6.818416 ACGTCATCTTGAAATTTACGAAGTC 58.182 36.000 12.83 0.00 43.93 3.01
6490 8878 6.422701 ACGTCATCTTGAAATTTACGAAGTCA 59.577 34.615 12.83 0.00 43.93 3.41
6491 8879 6.732392 CGTCATCTTGAAATTTACGAAGTCAC 59.268 38.462 2.05 0.16 43.93 3.67
6492 8880 7.015877 GTCATCTTGAAATTTACGAAGTCACC 58.984 38.462 0.00 0.00 43.93 4.02
6493 8881 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
6494 8882 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
6495 8883 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
6496 8884 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.521560 TGTCACGGATTAATCTGCAGAC 58.478 45.455 27.50 27.50 39.75 3.51
1 2 3.195610 ACTGTCACGGATTAATCTGCAGA 59.804 43.478 25.17 20.79 36.64 4.26
2 3 3.525537 ACTGTCACGGATTAATCTGCAG 58.474 45.455 21.84 20.93 36.64 4.41
3 4 3.610040 ACTGTCACGGATTAATCTGCA 57.390 42.857 21.84 12.15 36.64 4.41
4 5 4.270325 GGTTACTGTCACGGATTAATCTGC 59.730 45.833 21.84 8.47 36.64 4.26
5 6 5.291128 GTGGTTACTGTCACGGATTAATCTG 59.709 44.000 20.59 20.59 39.11 2.90
6 7 5.187186 AGTGGTTACTGTCACGGATTAATCT 59.813 40.000 14.95 0.00 38.77 2.40
7 8 5.416947 AGTGGTTACTGTCACGGATTAATC 58.583 41.667 6.93 6.93 38.77 1.75
8 9 5.416271 AGTGGTTACTGTCACGGATTAAT 57.584 39.130 0.00 0.00 38.77 1.40
9 10 4.877378 AGTGGTTACTGTCACGGATTAA 57.123 40.909 0.00 0.00 38.77 1.40
10 11 5.419788 ACATAGTGGTTACTGTCACGGATTA 59.580 40.000 0.00 0.00 37.78 1.75
14 15 3.587797 ACATAGTGGTTACTGTCACGG 57.412 47.619 0.00 0.00 37.78 4.94
19 20 3.649023 TCACCCAACATAGTGGTTACTGT 59.351 43.478 0.00 0.00 37.78 3.55
39 41 5.512942 TCATCTTGGGTATCCTTTTGTCA 57.487 39.130 0.00 0.00 0.00 3.58
52 54 2.555199 GTCGGAAGTGATCATCTTGGG 58.445 52.381 13.14 6.83 0.00 4.12
134 139 4.594491 ACATCTTCTTTCCCCTGCAAAAAT 59.406 37.500 0.00 0.00 0.00 1.82
165 170 6.582437 AAAACAAAAATGAAACGCCTACTG 57.418 33.333 0.00 0.00 0.00 2.74
177 182 7.150783 TCTTTTCCCCACAAAAACAAAAATG 57.849 32.000 0.00 0.00 0.00 2.32
207 212 0.757561 TTCACCAGTCTCGTCCACCA 60.758 55.000 0.00 0.00 0.00 4.17
210 215 0.608130 CCATTCACCAGTCTCGTCCA 59.392 55.000 0.00 0.00 0.00 4.02
219 224 0.612732 ATGCCACCACCATTCACCAG 60.613 55.000 0.00 0.00 0.00 4.00
272 280 7.148869 ACGAGTAAAAGCAAACAAAACAGTTTC 60.149 33.333 0.00 0.00 39.55 2.78
308 316 2.954318 ACTGATGCATTCCATGGCTTAC 59.046 45.455 6.96 0.00 33.29 2.34
343 351 9.206690 AGGTGGATGGAGTATATATGAGTATTG 57.793 37.037 0.00 0.00 0.00 1.90
351 359 9.805204 AGGATTTAAGGTGGATGGAGTATATAT 57.195 33.333 0.00 0.00 0.00 0.86
498 515 2.125147 TTCTGATGCGAAGGCCGG 60.125 61.111 0.00 0.00 38.85 6.13
524 541 3.157680 AGCTGGGCTTACGGTTGT 58.842 55.556 0.00 0.00 33.89 3.32
534 551 3.688159 CCAGGTGCAAAGCTGGGC 61.688 66.667 14.72 3.03 33.61 5.36
576 593 1.590792 GTACGTACCCCAGCGATGC 60.591 63.158 15.00 0.00 0.00 3.91
587 605 2.821969 TGAGGGTGAAGAAGGTACGTAC 59.178 50.000 17.56 17.56 0.00 3.67
613 632 1.002033 CTGTCACTGAAGCTGGCAAAC 60.002 52.381 0.00 0.00 0.00 2.93
629 652 5.517037 ACAGTACGTACGTAGTTACTGTC 57.483 43.478 33.23 19.41 37.78 3.51
632 655 5.869888 AGCTTACAGTACGTACGTAGTTACT 59.130 40.000 28.59 21.45 37.78 2.24
645 668 4.631813 CCAGACAAATCCAGCTTACAGTAC 59.368 45.833 0.00 0.00 0.00 2.73
646 669 4.530553 TCCAGACAAATCCAGCTTACAGTA 59.469 41.667 0.00 0.00 0.00 2.74
647 670 3.327757 TCCAGACAAATCCAGCTTACAGT 59.672 43.478 0.00 0.00 0.00 3.55
1041 1110 1.808390 GTAGTACACCTTGGCGGCG 60.808 63.158 0.51 0.51 35.61 6.46
1042 1111 1.808390 CGTAGTACACCTTGGCGGC 60.808 63.158 0.00 0.00 35.61 6.53
1044 1113 0.179145 CCTCGTAGTACACCTTGGCG 60.179 60.000 0.38 0.00 0.00 5.69
1173 1242 3.368531 CCTCTTCGTTTTAGACAGGGAGG 60.369 52.174 0.00 0.00 33.15 4.30
1189 1376 7.226918 GCCAGTACCAGTAATTTAATCCTCTTC 59.773 40.741 0.00 0.00 0.00 2.87
1225 1412 4.125703 AGACAAGACAAGACAAGAGCAAG 58.874 43.478 0.00 0.00 0.00 4.01
1227 1414 3.827008 AGACAAGACAAGACAAGAGCA 57.173 42.857 0.00 0.00 0.00 4.26
1228 1415 3.303659 GCAAGACAAGACAAGACAAGAGC 60.304 47.826 0.00 0.00 0.00 4.09
1229 1416 4.125703 AGCAAGACAAGACAAGACAAGAG 58.874 43.478 0.00 0.00 0.00 2.85
1230 1417 4.122776 GAGCAAGACAAGACAAGACAAGA 58.877 43.478 0.00 0.00 0.00 3.02
1232 1419 3.118261 AGGAGCAAGACAAGACAAGACAA 60.118 43.478 0.00 0.00 0.00 3.18
1233 1420 2.435805 AGGAGCAAGACAAGACAAGACA 59.564 45.455 0.00 0.00 0.00 3.41
1234 1421 2.805099 CAGGAGCAAGACAAGACAAGAC 59.195 50.000 0.00 0.00 0.00 3.01
1436 3282 6.386927 AGACAGGATCAGTTATGTTGGGAATA 59.613 38.462 0.00 0.00 0.00 1.75
1437 3283 5.192522 AGACAGGATCAGTTATGTTGGGAAT 59.807 40.000 0.00 0.00 0.00 3.01
1448 3294 1.546476 GACGGACAGACAGGATCAGTT 59.454 52.381 0.00 0.00 0.00 3.16
1458 3304 0.244178 GACAAGAGGGACGGACAGAC 59.756 60.000 0.00 0.00 0.00 3.51
1463 3309 2.510382 AGATAGAGACAAGAGGGACGGA 59.490 50.000 0.00 0.00 0.00 4.69
1465 3311 5.556915 AGATAGATAGAGACAAGAGGGACG 58.443 45.833 0.00 0.00 0.00 4.79
1480 3326 9.277783 GGCAAAGCTGAAAAAGATAGATAGATA 57.722 33.333 0.00 0.00 0.00 1.98
1481 3327 7.041508 CGGCAAAGCTGAAAAAGATAGATAGAT 60.042 37.037 0.00 0.00 37.02 1.98
1482 3328 6.258727 CGGCAAAGCTGAAAAAGATAGATAGA 59.741 38.462 0.00 0.00 37.02 1.98
1484 3330 6.112734 TCGGCAAAGCTGAAAAAGATAGATA 58.887 36.000 0.00 0.00 41.31 1.98
1485 3331 4.943705 TCGGCAAAGCTGAAAAAGATAGAT 59.056 37.500 0.00 0.00 41.31 1.98
1486 3332 4.323417 TCGGCAAAGCTGAAAAAGATAGA 58.677 39.130 0.00 0.00 41.31 1.98
1547 3532 1.027357 GCATGGGCATGTGAAGGTAG 58.973 55.000 0.00 0.00 40.80 3.18
1548 3533 0.395586 GGCATGGGCATGTGAAGGTA 60.396 55.000 0.00 0.00 43.71 3.08
1549 3534 1.683365 GGCATGGGCATGTGAAGGT 60.683 57.895 0.00 0.00 43.71 3.50
1559 3544 2.766345 TGAAGAAAATTGGCATGGGC 57.234 45.000 0.00 0.00 40.13 5.36
1573 3558 8.659491 CGAGACAAAATGAATACTGAATGAAGA 58.341 33.333 0.00 0.00 0.00 2.87
1575 3560 7.390440 ACCGAGACAAAATGAATACTGAATGAA 59.610 33.333 0.00 0.00 0.00 2.57
1577 3562 6.963242 CACCGAGACAAAATGAATACTGAATG 59.037 38.462 0.00 0.00 0.00 2.67
1578 3563 6.655003 ACACCGAGACAAAATGAATACTGAAT 59.345 34.615 0.00 0.00 0.00 2.57
1583 3589 6.435428 ACAAACACCGAGACAAAATGAATAC 58.565 36.000 0.00 0.00 0.00 1.89
1585 3591 5.514274 ACAAACACCGAGACAAAATGAAT 57.486 34.783 0.00 0.00 0.00 2.57
1598 3604 4.022464 TGCAGTCTTAAAACAAACACCG 57.978 40.909 0.00 0.00 0.00 4.94
1641 3846 7.549134 TCGAGACTATCATGCAGTGTTATTTTT 59.451 33.333 4.71 0.00 0.00 1.94
1649 3854 3.795639 CAGTTCGAGACTATCATGCAGTG 59.204 47.826 4.71 0.00 36.65 3.66
1651 3856 2.793790 GCAGTTCGAGACTATCATGCAG 59.206 50.000 0.00 0.00 36.65 4.41
1683 3899 4.019919 TCTTAAACTATCGACGAACCGG 57.980 45.455 0.00 0.00 0.00 5.28
1689 3905 6.427547 AGAGGGAGTATCTTAAACTATCGACG 59.572 42.308 0.00 0.00 33.73 5.12
1698 3914 4.955335 TGGGACAGAGGGAGTATCTTAAA 58.045 43.478 0.00 0.00 33.73 1.52
1711 3927 7.309499 AAGAGCGTCTTATATTATGGGACAGAG 60.309 40.741 0.00 0.00 36.89 3.35
1712 3928 6.493802 AAGAGCGTCTTATATTATGGGACAGA 59.506 38.462 0.00 0.00 36.89 3.41
1713 3929 6.587990 CAAGAGCGTCTTATATTATGGGACAG 59.412 42.308 0.87 5.68 36.59 3.51
1714 3930 6.041637 ACAAGAGCGTCTTATATTATGGGACA 59.958 38.462 0.87 0.00 37.41 4.02
1715 3931 6.456501 ACAAGAGCGTCTTATATTATGGGAC 58.543 40.000 0.87 0.00 33.78 4.46
1716 3932 6.665992 ACAAGAGCGTCTTATATTATGGGA 57.334 37.500 0.87 0.00 33.78 4.37
1717 3933 8.088981 AGTTACAAGAGCGTCTTATATTATGGG 58.911 37.037 0.87 0.00 33.78 4.00
1721 3937 9.622004 GCATAGTTACAAGAGCGTCTTATATTA 57.378 33.333 0.87 0.00 33.78 0.98
1722 3938 7.326305 CGCATAGTTACAAGAGCGTCTTATATT 59.674 37.037 0.00 0.00 40.25 1.28
1723 3939 6.802348 CGCATAGTTACAAGAGCGTCTTATAT 59.198 38.462 0.00 0.00 40.25 0.86
1724 3940 6.017687 TCGCATAGTTACAAGAGCGTCTTATA 60.018 38.462 0.00 0.00 44.83 0.98
1725 3941 4.976731 CGCATAGTTACAAGAGCGTCTTAT 59.023 41.667 0.00 0.00 40.25 1.73
1726 3942 4.095334 TCGCATAGTTACAAGAGCGTCTTA 59.905 41.667 0.00 0.00 44.83 2.10
1727 3943 3.119602 TCGCATAGTTACAAGAGCGTCTT 60.120 43.478 0.00 0.00 44.83 3.01
1728 3944 2.422479 TCGCATAGTTACAAGAGCGTCT 59.578 45.455 0.00 0.00 44.83 4.18
1729 3945 2.793933 TCGCATAGTTACAAGAGCGTC 58.206 47.619 0.00 0.00 44.83 5.19
1730 3946 2.933495 TCGCATAGTTACAAGAGCGT 57.067 45.000 0.00 0.00 44.83 5.07
1731 3947 4.778842 ATTTCGCATAGTTACAAGAGCG 57.221 40.909 0.00 0.00 45.79 5.03
1732 3948 6.905609 GGTAAATTTCGCATAGTTACAAGAGC 59.094 38.462 0.00 0.00 0.00 4.09
1733 3949 8.197988 AGGTAAATTTCGCATAGTTACAAGAG 57.802 34.615 0.00 0.00 0.00 2.85
1734 3950 8.556213 AAGGTAAATTTCGCATAGTTACAAGA 57.444 30.769 0.00 0.00 0.00 3.02
1735 3951 9.620660 AAAAGGTAAATTTCGCATAGTTACAAG 57.379 29.630 0.00 0.00 0.00 3.16
1736 3952 9.968870 AAAAAGGTAAATTTCGCATAGTTACAA 57.031 25.926 0.00 0.00 0.00 2.41
1737 3953 9.400638 CAAAAAGGTAAATTTCGCATAGTTACA 57.599 29.630 0.00 0.00 0.00 2.41
1738 3954 8.370321 GCAAAAAGGTAAATTTCGCATAGTTAC 58.630 33.333 0.00 0.00 0.00 2.50
1739 3955 7.542824 GGCAAAAAGGTAAATTTCGCATAGTTA 59.457 33.333 0.00 0.00 0.00 2.24
1740 3956 6.367695 GGCAAAAAGGTAAATTTCGCATAGTT 59.632 34.615 0.00 0.00 0.00 2.24
1741 3957 5.867174 GGCAAAAAGGTAAATTTCGCATAGT 59.133 36.000 0.00 0.00 0.00 2.12
1748 3964 6.929049 AGCTTACTGGCAAAAAGGTAAATTTC 59.071 34.615 10.45 0.00 34.17 2.17
1774 3990 6.421377 AAAGTGGCAAAAACAGATGAAAAC 57.579 33.333 0.00 0.00 0.00 2.43
1790 4006 3.231160 CGTCCGAACATTAAAAAGTGGC 58.769 45.455 0.00 0.00 0.00 5.01
1791 4007 3.499157 TCCGTCCGAACATTAAAAAGTGG 59.501 43.478 0.00 0.00 0.00 4.00
1792 4008 4.735662 TCCGTCCGAACATTAAAAAGTG 57.264 40.909 0.00 0.00 0.00 3.16
1793 4009 4.393990 GGATCCGTCCGAACATTAAAAAGT 59.606 41.667 0.00 0.00 34.13 2.66
1794 4010 4.905269 GGATCCGTCCGAACATTAAAAAG 58.095 43.478 0.00 0.00 34.13 2.27
1795 4011 4.950434 GGATCCGTCCGAACATTAAAAA 57.050 40.909 0.00 0.00 34.13 1.94
1807 4023 1.592669 CTGACATGCGGATCCGTCC 60.593 63.158 33.33 19.32 42.09 4.79
1808 4024 1.141881 ACTGACATGCGGATCCGTC 59.858 57.895 33.33 25.05 42.09 4.79
1809 4025 1.153568 CACTGACATGCGGATCCGT 60.154 57.895 33.33 15.53 42.09 4.69
1810 4026 0.249615 ATCACTGACATGCGGATCCG 60.250 55.000 30.03 30.03 43.09 4.18
1811 4027 2.224042 TGTATCACTGACATGCGGATCC 60.224 50.000 0.00 0.00 0.00 3.36
1812 4028 3.097877 TGTATCACTGACATGCGGATC 57.902 47.619 0.00 0.00 0.00 3.36
1813 4029 3.541996 TTGTATCACTGACATGCGGAT 57.458 42.857 0.00 0.00 0.00 4.18
1814 4030 3.000041 GTTTGTATCACTGACATGCGGA 59.000 45.455 0.00 0.00 0.00 5.54
1815 4031 2.095853 GGTTTGTATCACTGACATGCGG 59.904 50.000 0.00 0.00 0.00 5.69
1816 4032 2.222796 CGGTTTGTATCACTGACATGCG 60.223 50.000 0.00 0.00 0.00 4.73
1817 4033 3.000041 TCGGTTTGTATCACTGACATGC 59.000 45.455 0.00 0.00 0.00 4.06
1818 4034 4.091945 CACTCGGTTTGTATCACTGACATG 59.908 45.833 0.00 0.00 0.00 3.21
1819 4035 4.245660 CACTCGGTTTGTATCACTGACAT 58.754 43.478 0.00 0.00 0.00 3.06
1820 4036 3.554129 CCACTCGGTTTGTATCACTGACA 60.554 47.826 0.00 0.00 0.00 3.58
1821 4037 2.993899 CCACTCGGTTTGTATCACTGAC 59.006 50.000 0.00 0.00 0.00 3.51
1822 4038 2.611971 GCCACTCGGTTTGTATCACTGA 60.612 50.000 0.00 0.00 33.28 3.41
1823 4039 1.732259 GCCACTCGGTTTGTATCACTG 59.268 52.381 0.00 0.00 33.28 3.66
1824 4040 1.338769 GGCCACTCGGTTTGTATCACT 60.339 52.381 0.00 0.00 33.28 3.41
1825 4041 1.084289 GGCCACTCGGTTTGTATCAC 58.916 55.000 0.00 0.00 33.28 3.06
1826 4042 0.687920 TGGCCACTCGGTTTGTATCA 59.312 50.000 0.00 0.00 33.28 2.15
1827 4043 1.816074 TTGGCCACTCGGTTTGTATC 58.184 50.000 3.88 0.00 33.28 2.24
1828 4044 2.279935 TTTGGCCACTCGGTTTGTAT 57.720 45.000 3.88 0.00 33.28 2.29
1829 4045 1.950909 CTTTTGGCCACTCGGTTTGTA 59.049 47.619 3.88 0.00 33.28 2.41
1830 4046 0.744281 CTTTTGGCCACTCGGTTTGT 59.256 50.000 3.88 0.00 33.28 2.83
1831 4047 0.597377 GCTTTTGGCCACTCGGTTTG 60.597 55.000 3.88 0.00 34.27 2.93
1832 4048 1.040339 TGCTTTTGGCCACTCGGTTT 61.040 50.000 3.88 0.00 40.92 3.27
1833 4049 1.454847 TGCTTTTGGCCACTCGGTT 60.455 52.632 3.88 0.00 40.92 4.44
1834 4050 1.898574 CTGCTTTTGGCCACTCGGT 60.899 57.895 3.88 0.00 40.92 4.69
1835 4051 0.962356 ATCTGCTTTTGGCCACTCGG 60.962 55.000 3.88 0.00 40.92 4.63
1836 4052 0.169672 CATCTGCTTTTGGCCACTCG 59.830 55.000 3.88 0.00 40.92 4.18
1837 4053 0.108945 GCATCTGCTTTTGGCCACTC 60.109 55.000 3.88 0.00 40.92 3.51
1838 4054 1.538687 GGCATCTGCTTTTGGCCACT 61.539 55.000 3.88 0.00 44.01 4.00
1839 4055 1.079612 GGCATCTGCTTTTGGCCAC 60.080 57.895 3.88 0.00 44.01 5.01
1842 4058 1.087771 GCATGGCATCTGCTTTTGGC 61.088 55.000 5.84 0.00 41.70 4.52
1844 4060 2.087501 TTGCATGGCATCTGCTTTTG 57.912 45.000 13.68 0.00 38.76 2.44
1867 4083 4.829968 CTCTCCTTCATATATGCCACTGG 58.170 47.826 7.92 5.62 0.00 4.00
1881 4097 0.318762 ACGGACAGTTGCTCTCCTTC 59.681 55.000 0.00 0.00 0.00 3.46
1893 4109 3.253677 GGTGATCACTAGGATACGGACAG 59.746 52.174 24.50 0.00 46.39 3.51
1938 4154 4.692155 AGTCGGGTTATAAAAACGTTCAGG 59.308 41.667 0.00 0.00 0.00 3.86
1983 4199 4.379082 GCCTATTGTTAAAACGGGACACAG 60.379 45.833 0.00 0.00 0.00 3.66
1991 4207 6.317893 ACTGGAATAGGCCTATTGTTAAAACG 59.682 38.462 37.09 19.38 36.02 3.60
1997 4213 6.576778 ACTAACTGGAATAGGCCTATTGTT 57.423 37.500 37.09 32.13 36.02 2.83
2025 4241 8.398878 ACTAACTGGAATATCCGTTTCAAAAA 57.601 30.769 10.33 0.00 40.17 1.94
2026 4242 7.989416 ACTAACTGGAATATCCGTTTCAAAA 57.011 32.000 10.33 0.00 40.17 2.44
2027 4243 8.316214 ACTACTAACTGGAATATCCGTTTCAAA 58.684 33.333 10.33 0.00 40.17 2.69
2028 4244 7.844009 ACTACTAACTGGAATATCCGTTTCAA 58.156 34.615 10.33 0.00 40.17 2.69
2029 4245 7.414222 ACTACTAACTGGAATATCCGTTTCA 57.586 36.000 10.33 0.00 40.17 2.69
2030 4246 9.978044 ATAACTACTAACTGGAATATCCGTTTC 57.022 33.333 10.33 0.00 40.17 2.78
2032 4248 9.978044 GAATAACTACTAACTGGAATATCCGTT 57.022 33.333 10.06 10.06 40.17 4.44
2033 4249 9.139734 TGAATAACTACTAACTGGAATATCCGT 57.860 33.333 0.00 0.00 40.17 4.69
2034 4250 9.408069 GTGAATAACTACTAACTGGAATATCCG 57.592 37.037 0.00 0.00 40.17 4.18
2038 4254 9.182214 ACGAGTGAATAACTACTAACTGGAATA 57.818 33.333 0.00 0.00 40.07 1.75
2039 4255 8.064336 ACGAGTGAATAACTACTAACTGGAAT 57.936 34.615 0.00 0.00 40.07 3.01
2040 4256 7.458409 ACGAGTGAATAACTACTAACTGGAA 57.542 36.000 0.00 0.00 40.07 3.53
2052 4268 3.561503 GGGTGCAAAACGAGTGAATAAC 58.438 45.455 0.00 0.00 0.00 1.89
2059 4275 1.349688 TCATAGGGGTGCAAAACGAGT 59.650 47.619 0.00 0.00 0.00 4.18
2066 4282 1.216064 AGCAGATCATAGGGGTGCAA 58.784 50.000 0.00 0.00 36.57 4.08
2116 4332 8.988934 GGGAAAAACCTGAATACTTTCATTTTC 58.011 33.333 12.89 12.89 41.79 2.29
2129 4347 7.294584 TGATTTAGAGAAGGGAAAAACCTGAA 58.705 34.615 0.00 0.00 40.87 3.02
2229 4447 6.294361 ACAGAATGGCAGTTATGTAGTACA 57.706 37.500 5.24 5.24 43.62 2.90
2379 4602 4.748102 ACAGTTATGTACCGAATATTGGCG 59.252 41.667 0.00 0.00 38.09 5.69
2381 4604 8.651391 TGTAACAGTTATGTACCGAATATTGG 57.349 34.615 0.00 0.00 39.29 3.16
2554 4777 4.551388 TGTTGTGGTAAATTTTCATCCGC 58.449 39.130 0.00 2.47 0.00 5.54
2764 4988 2.293399 GCAACTGTCCCTCGATTTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
2765 4989 2.293122 TGCAACTGTCCCTCGATTTTTG 59.707 45.455 0.00 0.00 0.00 2.44
2769 4993 0.036010 CCTGCAACTGTCCCTCGATT 60.036 55.000 0.00 0.00 0.00 3.34
2770 4994 0.904865 TCCTGCAACTGTCCCTCGAT 60.905 55.000 0.00 0.00 0.00 3.59
2796 5020 6.917477 TGACATGATTAACAAAAACAGCTGTC 59.083 34.615 21.95 3.73 31.10 3.51
2853 5077 1.149401 GAGTAAGCCTGCATCCCCC 59.851 63.158 0.00 0.00 0.00 5.40
2956 5180 8.219546 TCAAACTGAGTTCATGTAATGTTTCA 57.780 30.769 0.00 0.00 46.80 2.69
2957 5181 9.334693 GATCAAACTGAGTTCATGTAATGTTTC 57.665 33.333 0.00 0.00 46.80 2.78
2958 5182 9.071276 AGATCAAACTGAGTTCATGTAATGTTT 57.929 29.630 0.00 0.00 46.80 2.83
2960 5184 8.627208 AAGATCAAACTGAGTTCATGTAATGT 57.373 30.769 0.00 0.00 46.80 2.71
2962 5186 9.288576 TGAAAGATCAAACTGAGTTCATGTAAT 57.711 29.630 0.00 0.00 30.99 1.89
2963 5187 8.675705 TGAAAGATCAAACTGAGTTCATGTAA 57.324 30.769 0.00 0.00 30.99 2.41
2964 5188 8.853077 ATGAAAGATCAAACTGAGTTCATGTA 57.147 30.769 0.00 0.00 39.49 2.29
2965 5189 7.756395 ATGAAAGATCAAACTGAGTTCATGT 57.244 32.000 0.00 0.00 39.49 3.21
3074 5316 4.820897 TCTCAGTGAATGTGATTAACGCT 58.179 39.130 0.00 0.00 0.00 5.07
3085 5327 7.372714 TGGTCAAATGAAAATCTCAGTGAATG 58.627 34.615 0.00 0.00 37.52 2.67
3173 5417 4.790790 AGGAGAAATGAGTACCTCCCAAAT 59.209 41.667 9.27 0.00 44.72 2.32
3231 5475 1.272212 ACGGACATGAAAATGGGCAAC 59.728 47.619 0.00 0.00 0.00 4.17
3418 5662 4.460263 AGTGTTTCCTGTTTAGTGCATCA 58.540 39.130 0.00 0.00 0.00 3.07
3453 5697 4.853924 TTCAGCTCCCATTTCAAACTTC 57.146 40.909 0.00 0.00 0.00 3.01
3466 5710 1.916697 GCTTCAGCCGTTTCAGCTCC 61.917 60.000 0.00 0.00 38.95 4.70
3940 6185 7.713764 AGAGGTATGCAAAAATGTTCAAAAC 57.286 32.000 0.00 0.00 0.00 2.43
4111 6360 9.428097 GAAATTGGCATAAAGAAAAAGAGTGAT 57.572 29.630 0.00 0.00 0.00 3.06
4359 6608 4.199310 AGTGGCACATGTATGTAACCATC 58.801 43.478 21.41 12.47 43.63 3.51
4503 6763 0.391927 GGCCACGTACCACAGCATTA 60.392 55.000 0.00 0.00 0.00 1.90
4680 6941 7.044052 GCAACAGACTTGAACAAAGACATTAAC 60.044 37.037 0.00 0.00 39.38 2.01
4689 6950 3.351740 TGGAGCAACAGACTTGAACAAA 58.648 40.909 0.00 0.00 0.00 2.83
5080 7348 0.239347 GAAAGAACGCTGCATGCTGT 59.761 50.000 23.42 14.41 40.11 4.40
5109 7377 2.107378 TGTATTTCCTGGAACTGCACCA 59.893 45.455 9.04 0.00 35.96 4.17
5110 7378 2.790433 TGTATTTCCTGGAACTGCACC 58.210 47.619 9.04 0.00 0.00 5.01
5129 7398 8.671921 AGAAAACTAGTGATACTGCAATTGATG 58.328 33.333 10.34 3.02 0.00 3.07
5141 7410 9.645059 CATTGAGAACTGAGAAAACTAGTGATA 57.355 33.333 0.00 0.00 0.00 2.15
5151 7420 9.793259 ATACTTTAACCATTGAGAACTGAGAAA 57.207 29.630 0.00 0.00 0.00 2.52
5212 7481 5.452917 CGGAGGGAGTACTACCTATTTTTGG 60.453 48.000 27.44 7.30 46.12 3.28
5312 7581 8.950210 ACCATATGATAGAAATGCTAAATTCCG 58.050 33.333 3.65 0.00 31.66 4.30
5384 7653 4.999311 TCTGATCACCTGAAAACACATGAG 59.001 41.667 0.00 0.00 0.00 2.90
5481 7750 6.174760 TGTCAGGTTTTACTTGTAGTGTTGT 58.825 36.000 0.00 0.00 0.00 3.32
5527 7796 4.600692 ACCACACGCATTGCTCTATATA 57.399 40.909 7.12 0.00 0.00 0.86
5528 7797 3.475566 ACCACACGCATTGCTCTATAT 57.524 42.857 7.12 0.00 0.00 0.86
5595 7864 9.239002 GCTACATCTATCTACAAGTACAACAAG 57.761 37.037 0.00 0.00 0.00 3.16
5598 7867 8.407064 ACTGCTACATCTATCTACAAGTACAAC 58.593 37.037 0.00 0.00 0.00 3.32
5690 7974 0.752009 AGGAGAGCGACGGAGCAATA 60.752 55.000 7.12 0.00 40.15 1.90
5701 7985 3.884091 ACTACACATAGGTTAGGAGAGCG 59.116 47.826 0.00 0.00 32.08 5.03
5762 8072 2.976589 CCCCCAATTGCATCAAGAAAC 58.023 47.619 0.00 0.00 0.00 2.78
5800 8111 4.148825 CCTCCGACCCGAAGCAGG 62.149 72.222 0.00 0.00 0.00 4.85
5802 8113 3.068691 CTCCTCCGACCCGAAGCA 61.069 66.667 0.00 0.00 0.00 3.91
5804 8115 0.606604 TTTTCTCCTCCGACCCGAAG 59.393 55.000 0.00 0.00 0.00 3.79
5863 8184 1.135373 ACTACTGCTGTCCGTCAATCG 60.135 52.381 0.00 0.00 39.52 3.34
5871 8197 1.215647 CGACCCACTACTGCTGTCC 59.784 63.158 0.00 0.00 0.00 4.02
5949 8286 1.369625 AGATCCAATCCGCGTTTCAC 58.630 50.000 4.92 0.00 0.00 3.18
5950 8287 2.006888 GAAGATCCAATCCGCGTTTCA 58.993 47.619 4.92 0.00 0.00 2.69
5951 8288 1.004927 CGAAGATCCAATCCGCGTTTC 60.005 52.381 4.92 0.00 0.00 2.78
5979 8316 3.311402 TGCCCCTTCTCCTAAGTCCTAAT 60.311 47.826 0.00 0.00 0.00 1.73
5986 8323 0.467804 GCTCTGCCCCTTCTCCTAAG 59.532 60.000 0.00 0.00 0.00 2.18
5987 8324 1.330655 CGCTCTGCCCCTTCTCCTAA 61.331 60.000 0.00 0.00 0.00 2.69
5988 8325 1.758514 CGCTCTGCCCCTTCTCCTA 60.759 63.158 0.00 0.00 0.00 2.94
5989 8326 3.080121 CGCTCTGCCCCTTCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
5999 8336 2.886124 GGGTACGAAGCGCTCTGC 60.886 66.667 12.06 2.04 46.98 4.26
6000 8337 2.579787 CGGGTACGAAGCGCTCTG 60.580 66.667 12.06 9.13 44.60 3.35
6001 8338 4.493747 GCGGGTACGAAGCGCTCT 62.494 66.667 12.06 0.00 44.60 4.09
6006 8343 4.125695 AGGTCGCGGGTACGAAGC 62.126 66.667 6.13 0.00 44.93 3.86
6007 8344 2.202570 CAGGTCGCGGGTACGAAG 60.203 66.667 6.13 0.00 44.93 3.79
6008 8345 3.751246 CCAGGTCGCGGGTACGAA 61.751 66.667 6.13 0.00 44.93 3.85
6048 8385 4.135153 CTGGAGGAGTGCCGTCGG 62.135 72.222 6.99 6.99 39.96 4.79
6049 8386 4.803426 GCTGGAGGAGTGCCGTCG 62.803 72.222 0.00 0.00 39.96 5.12
6050 8387 2.456287 AAAGCTGGAGGAGTGCCGTC 62.456 60.000 0.00 0.00 39.96 4.79
6051 8388 2.456287 GAAAGCTGGAGGAGTGCCGT 62.456 60.000 0.00 0.00 39.96 5.68
6052 8389 1.743252 GAAAGCTGGAGGAGTGCCG 60.743 63.158 0.00 0.00 39.96 5.69
6053 8390 1.743252 CGAAAGCTGGAGGAGTGCC 60.743 63.158 0.00 0.00 0.00 5.01
6054 8391 3.882025 CGAAAGCTGGAGGAGTGC 58.118 61.111 0.00 0.00 0.00 4.40
6154 8500 4.465512 GTCGGACGGCGCTACGAA 62.466 66.667 19.63 5.05 37.08 3.85
6175 8521 2.818274 CTGTACGGGCGGAAAGGC 60.818 66.667 0.00 0.00 45.91 4.35
6180 8526 2.707849 GCTTCTCTGTACGGGCGGA 61.708 63.158 0.85 0.00 0.00 5.54
6182 8528 2.579787 CGCTTCTCTGTACGGGCG 60.580 66.667 8.35 8.35 36.89 6.13
6183 8529 2.886124 GCGCTTCTCTGTACGGGC 60.886 66.667 0.00 0.00 0.00 6.13
6216 8604 4.864806 CCATCGTTTATGATCCTATCCGTG 59.135 45.833 0.00 0.00 37.86 4.94
6219 8607 4.080863 AGCCCATCGTTTATGATCCTATCC 60.081 45.833 0.00 0.00 37.86 2.59
6220 8608 5.091261 AGCCCATCGTTTATGATCCTATC 57.909 43.478 0.00 0.00 37.86 2.08
6221 8609 5.505181 AAGCCCATCGTTTATGATCCTAT 57.495 39.130 0.00 0.00 37.86 2.57
6222 8610 4.974645 AAGCCCATCGTTTATGATCCTA 57.025 40.909 0.00 0.00 37.86 2.94
6223 8611 3.864789 AAGCCCATCGTTTATGATCCT 57.135 42.857 0.00 0.00 37.86 3.24
6250 8638 1.957113 GCCTTCAGATGGGACTTTGGG 60.957 57.143 4.53 0.00 0.00 4.12
6257 8645 1.565390 CCACTGGCCTTCAGATGGGA 61.565 60.000 3.32 0.00 46.18 4.37
6281 8669 4.839121 ACTGGCGTCCATATGTTTCTTAA 58.161 39.130 1.24 0.00 30.82 1.85
6352 8740 6.606234 TTGCGTCTGTACTGATGTTAAAAA 57.394 33.333 19.48 7.53 0.00 1.94
6353 8741 5.333798 GCTTGCGTCTGTACTGATGTTAAAA 60.334 40.000 19.48 10.58 0.00 1.52
6354 8742 4.151689 GCTTGCGTCTGTACTGATGTTAAA 59.848 41.667 19.48 12.39 0.00 1.52
6355 8743 3.678072 GCTTGCGTCTGTACTGATGTTAA 59.322 43.478 19.48 14.64 0.00 2.01
6356 8744 3.250744 GCTTGCGTCTGTACTGATGTTA 58.749 45.455 19.48 9.40 0.00 2.41
6357 8745 2.069273 GCTTGCGTCTGTACTGATGTT 58.931 47.619 19.48 0.00 0.00 2.71
6358 8746 1.714794 GCTTGCGTCTGTACTGATGT 58.285 50.000 19.48 0.00 0.00 3.06
6359 8747 0.642291 CGCTTGCGTCTGTACTGATG 59.358 55.000 15.57 15.57 0.00 3.07
6360 8748 1.078759 GCGCTTGCGTCTGTACTGAT 61.079 55.000 16.38 0.00 0.00 2.90
6361 8749 1.733041 GCGCTTGCGTCTGTACTGA 60.733 57.895 16.38 0.00 0.00 3.41
6362 8750 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
6363 8751 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
6364 8752 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
6365 8753 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
6366 8754 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
6367 8755 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
6368 8756 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
6369 8757 0.042708 CATGTATGAGCGCTTGCGTC 60.043 55.000 13.26 12.36 45.69 5.19
6370 8758 2.009108 CATGTATGAGCGCTTGCGT 58.991 52.632 13.26 3.24 45.69 5.24
6371 8759 1.368493 GCATGTATGAGCGCTTGCG 60.368 57.895 13.26 10.90 45.69 4.85
6372 8760 0.041488 GAGCATGTATGAGCGCTTGC 60.041 55.000 19.24 19.24 34.12 4.01
6373 8761 0.231534 CGAGCATGTATGAGCGCTTG 59.768 55.000 13.26 5.62 34.12 4.01
6374 8762 1.493950 GCGAGCATGTATGAGCGCTT 61.494 55.000 13.26 0.00 43.49 4.68
6375 8763 1.953138 GCGAGCATGTATGAGCGCT 60.953 57.895 11.27 11.27 43.49 5.92
6376 8764 1.563435 ATGCGAGCATGTATGAGCGC 61.563 55.000 10.04 18.35 45.45 5.92
6377 8765 1.388093 GTATGCGAGCATGTATGAGCG 59.612 52.381 19.64 0.00 37.82 5.03
6378 8766 2.156504 GTGTATGCGAGCATGTATGAGC 59.843 50.000 19.64 0.00 37.82 4.26
6379 8767 3.646946 AGTGTATGCGAGCATGTATGAG 58.353 45.455 19.64 0.00 37.82 2.90
6380 8768 3.068024 TGAGTGTATGCGAGCATGTATGA 59.932 43.478 19.64 0.00 37.82 2.15
6381 8769 3.183172 GTGAGTGTATGCGAGCATGTATG 59.817 47.826 19.64 0.00 37.82 2.39
6382 8770 3.384668 GTGAGTGTATGCGAGCATGTAT 58.615 45.455 19.64 4.06 37.82 2.29
6383 8771 2.481276 GGTGAGTGTATGCGAGCATGTA 60.481 50.000 19.64 6.43 37.82 2.29
6384 8772 1.645034 GTGAGTGTATGCGAGCATGT 58.355 50.000 19.64 0.00 37.82 3.21
6385 8773 0.933097 GGTGAGTGTATGCGAGCATG 59.067 55.000 19.64 0.00 37.82 4.06
6386 8774 0.179073 GGGTGAGTGTATGCGAGCAT 60.179 55.000 15.28 15.28 40.19 3.79
6387 8775 1.218047 GGGTGAGTGTATGCGAGCA 59.782 57.895 0.00 0.00 0.00 4.26
6388 8776 1.521681 GGGGTGAGTGTATGCGAGC 60.522 63.158 0.00 0.00 0.00 5.03
6389 8777 1.399714 TAGGGGTGAGTGTATGCGAG 58.600 55.000 0.00 0.00 0.00 5.03
6390 8778 1.686587 CATAGGGGTGAGTGTATGCGA 59.313 52.381 0.00 0.00 0.00 5.10
6391 8779 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
6392 8780 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
6393 8781 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
6394 8782 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
6395 8783 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
6396 8784 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
6397 8785 0.806102 CGCGTTCATAGGGGTGAGTG 60.806 60.000 0.00 0.00 0.00 3.51
6398 8786 1.515954 CGCGTTCATAGGGGTGAGT 59.484 57.895 0.00 0.00 0.00 3.41
6399 8787 1.883084 GCGCGTTCATAGGGGTGAG 60.883 63.158 8.43 0.00 0.00 3.51
6400 8788 2.185867 GCGCGTTCATAGGGGTGA 59.814 61.111 8.43 0.00 0.00 4.02
6401 8789 3.261951 CGCGCGTTCATAGGGGTG 61.262 66.667 24.19 0.00 0.00 4.61
6415 8803 3.913573 GTAGGATGTGTGCGCGCG 61.914 66.667 28.44 28.44 0.00 6.86
6416 8804 3.564027 GGTAGGATGTGTGCGCGC 61.564 66.667 27.26 27.26 0.00 6.86
6417 8805 2.890474 GGGTAGGATGTGTGCGCG 60.890 66.667 0.00 0.00 0.00 6.86
6418 8806 1.682451 TAGGGGTAGGATGTGTGCGC 61.682 60.000 0.00 0.00 0.00 6.09
6419 8807 1.048601 ATAGGGGTAGGATGTGTGCG 58.951 55.000 0.00 0.00 0.00 5.34
6420 8808 2.037772 CTCATAGGGGTAGGATGTGTGC 59.962 54.545 0.00 0.00 0.00 4.57
6421 8809 2.037772 GCTCATAGGGGTAGGATGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
6422 8810 2.330216 GCTCATAGGGGTAGGATGTGT 58.670 52.381 0.00 0.00 0.00 3.72
6423 8811 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
6424 8812 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
6425 8813 1.625818 GGTGCTCATAGGGGTAGGATG 59.374 57.143 0.00 0.00 0.00 3.51
6426 8814 1.509961 AGGTGCTCATAGGGGTAGGAT 59.490 52.381 0.00 0.00 0.00 3.24
6427 8815 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
6428 8816 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
6429 8817 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
6430 8818 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
6431 8819 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
6432 8820 0.390860 CTCGAAGGTGCTCATAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
6433 8821 1.403814 TCTCGAAGGTGCTCATAGGG 58.596 55.000 0.00 0.00 0.00 3.53
6434 8822 3.526931 TTTCTCGAAGGTGCTCATAGG 57.473 47.619 0.00 0.00 0.00 2.57
6435 8823 5.111989 TCAATTTCTCGAAGGTGCTCATAG 58.888 41.667 0.00 0.00 0.00 2.23
6436 8824 5.084818 TCAATTTCTCGAAGGTGCTCATA 57.915 39.130 0.00 0.00 0.00 2.15
6437 8825 3.937706 CTCAATTTCTCGAAGGTGCTCAT 59.062 43.478 0.00 0.00 0.00 2.90
6438 8826 3.329386 CTCAATTTCTCGAAGGTGCTCA 58.671 45.455 0.00 0.00 0.00 4.26
6439 8827 2.095053 GCTCAATTTCTCGAAGGTGCTC 59.905 50.000 0.00 0.00 0.00 4.26
6440 8828 2.079925 GCTCAATTTCTCGAAGGTGCT 58.920 47.619 0.00 0.00 0.00 4.40
6441 8829 1.131315 GGCTCAATTTCTCGAAGGTGC 59.869 52.381 0.00 0.00 0.00 5.01
6442 8830 1.394917 CGGCTCAATTTCTCGAAGGTG 59.605 52.381 0.00 0.00 0.00 4.00
6443 8831 1.676014 CCGGCTCAATTTCTCGAAGGT 60.676 52.381 0.00 0.00 0.00 3.50
6444 8832 1.009829 CCGGCTCAATTTCTCGAAGG 58.990 55.000 0.00 0.00 0.00 3.46
6445 8833 1.726853 ACCGGCTCAATTTCTCGAAG 58.273 50.000 0.00 0.00 0.00 3.79
6446 8834 2.613691 GTACCGGCTCAATTTCTCGAA 58.386 47.619 0.00 0.00 0.00 3.71
6447 8835 1.468565 CGTACCGGCTCAATTTCTCGA 60.469 52.381 0.00 0.00 0.00 4.04
6448 8836 0.921347 CGTACCGGCTCAATTTCTCG 59.079 55.000 0.00 0.00 0.00 4.04
6449 8837 1.925185 GACGTACCGGCTCAATTTCTC 59.075 52.381 0.00 0.00 0.00 2.87
6450 8838 1.274167 TGACGTACCGGCTCAATTTCT 59.726 47.619 0.00 0.00 35.04 2.52
6451 8839 1.717194 TGACGTACCGGCTCAATTTC 58.283 50.000 0.00 0.00 35.04 2.17
6452 8840 2.093658 AGATGACGTACCGGCTCAATTT 60.094 45.455 0.00 0.00 35.04 1.82
6453 8841 1.480954 AGATGACGTACCGGCTCAATT 59.519 47.619 0.00 0.00 35.04 2.32
6454 8842 1.112113 AGATGACGTACCGGCTCAAT 58.888 50.000 0.00 0.00 35.04 2.57
6455 8843 0.892755 AAGATGACGTACCGGCTCAA 59.107 50.000 0.00 0.00 35.04 3.02
6456 8844 0.172578 CAAGATGACGTACCGGCTCA 59.827 55.000 0.00 0.00 35.04 4.26
6457 8845 0.454600 TCAAGATGACGTACCGGCTC 59.545 55.000 0.00 0.00 35.04 4.70
6458 8846 0.892755 TTCAAGATGACGTACCGGCT 59.107 50.000 0.00 0.00 35.04 5.52
6459 8847 1.717194 TTTCAAGATGACGTACCGGC 58.283 50.000 0.00 0.00 34.27 6.13
6460 8848 4.939509 AAATTTCAAGATGACGTACCGG 57.060 40.909 0.00 0.00 0.00 5.28
6461 8849 5.286797 TCGTAAATTTCAAGATGACGTACCG 59.713 40.000 0.00 0.00 0.00 4.02
6462 8850 6.636666 TCGTAAATTTCAAGATGACGTACC 57.363 37.500 0.00 0.00 0.00 3.34
6463 8851 7.727017 ACTTCGTAAATTTCAAGATGACGTAC 58.273 34.615 0.00 0.00 0.00 3.67
6464 8852 7.595875 TGACTTCGTAAATTTCAAGATGACGTA 59.404 33.333 0.00 0.00 0.00 3.57
6465 8853 6.422701 TGACTTCGTAAATTTCAAGATGACGT 59.577 34.615 0.00 0.00 0.00 4.34
6466 8854 6.732392 GTGACTTCGTAAATTTCAAGATGACG 59.268 38.462 0.00 0.00 0.00 4.35
6467 8855 7.015877 GGTGACTTCGTAAATTTCAAGATGAC 58.984 38.462 0.00 0.00 0.00 3.06
6468 8856 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
6469 8857 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
6470 8858 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
6471 8859 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
6472 8860 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
6473 8861 6.456447 CTACGGTGACTTCGTAAATTTCAA 57.544 37.500 0.00 0.00 41.62 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.