Multiple sequence alignment - TraesCS5D01G153100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G153100 chr5D 100.000 2300 0 0 1 2300 241843746 241846045 0.000000e+00 4248.0
1 TraesCS5D01G153100 chr5D 95.570 158 5 2 331 486 115924650 115924493 3.790000e-63 252.0
2 TraesCS5D01G153100 chr5D 95.205 146 7 0 331 476 469424996 469425141 4.940000e-57 231.0
3 TraesCS5D01G153100 chr5A 97.355 1815 31 5 502 2300 311673981 311675794 0.000000e+00 3070.0
4 TraesCS5D01G153100 chr5A 99.102 334 3 0 1 334 311673549 311673882 3.270000e-168 601.0
5 TraesCS5D01G153100 chr5A 100.000 43 0 0 458 500 311673881 311673923 1.890000e-11 80.5
6 TraesCS5D01G153100 chr5B 94.353 974 51 3 536 1509 256614139 256615108 0.000000e+00 1491.0
7 TraesCS5D01G153100 chr5B 93.742 799 38 8 1510 2300 256615141 256615935 0.000000e+00 1188.0
8 TraesCS5D01G153100 chr5B 86.228 334 19 6 1 334 256613761 256614067 1.020000e-88 337.0
9 TraesCS5D01G153100 chr3B 97.163 141 4 0 332 472 76508378 76508238 2.950000e-59 239.0
10 TraesCS5D01G153100 chr2B 93.789 161 7 3 329 487 199013722 199013881 2.950000e-59 239.0
11 TraesCS5D01G153100 chr7D 99.237 131 1 0 331 461 135760762 135760632 1.060000e-58 237.0
12 TraesCS5D01G153100 chr7D 95.804 143 4 2 321 462 576290339 576290198 1.780000e-56 230.0
13 TraesCS5D01G153100 chr3D 99.237 131 1 0 332 462 91666449 91666579 1.060000e-58 237.0
14 TraesCS5D01G153100 chr7B 98.507 134 1 1 331 464 680907437 680907569 3.820000e-58 235.0
15 TraesCS5D01G153100 chr6A 92.903 155 10 1 327 480 330471329 330471175 8.270000e-55 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G153100 chr5D 241843746 241846045 2299 False 4248.000000 4248 100.000 1 2300 1 chr5D.!!$F1 2299
1 TraesCS5D01G153100 chr5A 311673549 311675794 2245 False 1250.500000 3070 98.819 1 2300 3 chr5A.!!$F1 2299
2 TraesCS5D01G153100 chr5B 256613761 256615935 2174 False 1005.333333 1491 91.441 1 2300 3 chr5B.!!$F1 2299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1897 0.457337 CGTCGGTGGCCTAACAGTAC 60.457 60.0 3.32 0.0 0.0 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
338 339 9.910267 TTCTGTTTACCCTTAAATTATACTCCC 57.090 33.333 0.00 0.00 29.82 4.30
339 340 9.287818 TCTGTTTACCCTTAAATTATACTCCCT 57.712 33.333 0.00 0.00 29.82 4.20
340 341 9.557061 CTGTTTACCCTTAAATTATACTCCCTC 57.443 37.037 0.00 0.00 29.82 4.30
341 342 8.496916 TGTTTACCCTTAAATTATACTCCCTCC 58.503 37.037 0.00 0.00 29.82 4.30
342 343 5.820404 ACCCTTAAATTATACTCCCTCCG 57.180 43.478 0.00 0.00 0.00 4.63
343 344 5.222086 ACCCTTAAATTATACTCCCTCCGT 58.778 41.667 0.00 0.00 0.00 4.69
344 345 5.306419 ACCCTTAAATTATACTCCCTCCGTC 59.694 44.000 0.00 0.00 0.00 4.79
345 346 5.279859 CCCTTAAATTATACTCCCTCCGTCC 60.280 48.000 0.00 0.00 0.00 4.79
346 347 5.279859 CCTTAAATTATACTCCCTCCGTCCC 60.280 48.000 0.00 0.00 0.00 4.46
347 348 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
348 349 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
349 350 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
350 351 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
351 352 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
352 353 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
353 354 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
354 355 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
355 356 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
356 357 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
357 358 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
358 359 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
359 360 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
360 361 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
361 362 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
362 363 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
363 364 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
364 365 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
365 366 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
366 367 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
367 368 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
368 369 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
369 370 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
370 371 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
378 379 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
379 380 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
381 382 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
382 383 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
393 394 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
394 395 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
397 398 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
400 401 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
401 402 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
402 403 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
403 404 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
413 414 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
414 415 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
415 416 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
416 417 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
417 418 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
433 434 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
434 435 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
435 436 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
436 437 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
437 438 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
438 439 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
446 447 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
447 448 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
448 449 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
449 450 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
450 451 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
451 452 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
452 453 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
453 454 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
454 455 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
455 456 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
456 457 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
457 458 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
458 459 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
500 501 5.464030 TTTGTGAAGTACTCCCTCTGTAC 57.536 43.478 0.00 0.00 40.19 2.90
610 685 2.591923 TGCAAGGTCAACATGCCTTAA 58.408 42.857 2.44 0.00 42.68 1.85
821 900 9.270640 GATACTTATCAGCTCATGTCTTTCAAT 57.729 33.333 0.00 0.00 32.98 2.57
1168 1247 5.187687 CCCTACGAGTACTTCTTTCTCTCT 58.812 45.833 0.00 0.00 0.00 3.10
1402 1481 6.425417 TCGTATGTTGTCTGCAGAATTTGTAA 59.575 34.615 20.19 4.47 0.00 2.41
1480 1559 5.163519 GCATTGCAATTAACTCCTACACCAT 60.164 40.000 9.83 0.00 0.00 3.55
1481 1560 6.498304 CATTGCAATTAACTCCTACACCATC 58.502 40.000 9.83 0.00 0.00 3.51
1509 1588 2.611751 CACAAACAATCCACTCACGTCA 59.388 45.455 0.00 0.00 0.00 4.35
1786 1897 6.822667 AGTACTGATCAGATAGAGATGCAG 57.177 41.667 29.27 0.00 32.18 4.41
1826 1937 5.757886 ACGAACCATACAACAATTGAAGTG 58.242 37.500 13.59 9.46 0.00 3.16
1838 1949 9.725019 ACAACAATTGAAGTGTAGATGATTAGA 57.275 29.630 13.59 0.00 0.00 2.10
2070 2182 8.432805 CCTCAAAAGTCAACTAGTGGGATATAT 58.567 37.037 0.00 0.00 0.00 0.86
2116 2228 6.165577 AGTTCACAAATCTGTTTGCTTGTTT 58.834 32.000 1.12 0.00 46.84 2.83
2238 2356 6.647895 AGTTTTGTAGTACTGTTACAATCCCG 59.352 38.462 5.39 0.00 39.84 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 4.437239 CTGCTTACAGCTATAGCACACTT 58.563 43.478 26.07 2.34 42.97 3.16
334 335 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
335 336 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
336 337 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
337 338 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
338 339 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
339 340 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
340 341 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
341 342 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
342 343 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
343 344 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
344 345 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
352 353 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
353 354 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
355 356 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
356 357 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
367 368 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
368 369 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
371 372 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
374 375 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
375 376 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
376 377 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
377 378 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
387 388 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
388 389 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
389 390 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
390 391 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
391 392 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
392 393 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
407 408 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
408 409 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
409 410 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
410 411 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
411 412 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
412 413 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
420 421 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
421 422 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
422 423 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
423 424 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
424 425 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
425 426 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
426 427 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
427 428 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
428 429 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
429 430 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
430 431 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
431 432 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
432 433 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
433 434 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
434 435 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
435 436 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
436 437 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
437 438 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
438 439 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
439 440 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
440 441 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
441 442 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
442 443 4.687262 ATATATACTCCCTCCGTCCCAA 57.313 45.455 0.00 0.00 0.00 4.12
443 444 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
444 445 5.127356 CAGAAATATATACTCCCTCCGTCCC 59.873 48.000 0.00 0.00 0.00 4.46
445 446 5.715753 ACAGAAATATATACTCCCTCCGTCC 59.284 44.000 0.00 0.00 0.00 4.79
446 447 6.837471 ACAGAAATATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
447 448 8.896722 ATAACAGAAATATATACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
661 739 8.877864 AATGATTTAAGGAGTGTAATGAACCA 57.122 30.769 0.00 0.00 0.00 3.67
821 900 0.325296 ATAGAAGTCCCGCCCAGTCA 60.325 55.000 0.00 0.00 0.00 3.41
1168 1247 9.565090 CAAGGGAAAAGATTGATACAGATATGA 57.435 33.333 0.00 0.00 0.00 2.15
1480 1559 4.717877 AGTGGATTGTTTGTGATGTCTGA 58.282 39.130 0.00 0.00 0.00 3.27
1481 1560 4.516321 TGAGTGGATTGTTTGTGATGTCTG 59.484 41.667 0.00 0.00 0.00 3.51
1526 1637 1.341209 GTTTCCTGCCCTGGTGAAAAG 59.659 52.381 0.00 0.00 0.00 2.27
1786 1897 0.457337 CGTCGGTGGCCTAACAGTAC 60.457 60.000 3.32 0.00 0.00 2.73
1838 1949 5.562890 GCGCAAGGAAGTCTATTCTTTTGTT 60.563 40.000 0.30 0.00 38.28 2.83
2011 2123 4.342951 CAGTTGGCCCATCATAATCACAAT 59.657 41.667 0.00 0.00 0.00 2.71
2070 2182 8.890410 AACTAAGTCCTGAACTATACCTAACA 57.110 34.615 0.00 0.00 37.17 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.