Multiple sequence alignment - TraesCS5D01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G153000 chr5D 100.000 4714 0 0 1 4714 241848262 241843549 0.000000e+00 8706.0
1 TraesCS5D01G153000 chr5D 95.570 158 5 2 4032 4187 115924493 115924650 7.830000e-63 252.0
2 TraesCS5D01G153000 chr5D 95.205 146 7 0 4042 4187 469425141 469424996 1.020000e-56 231.0
3 TraesCS5D01G153000 chr5A 95.633 3549 114 19 488 4016 311677508 311673981 0.000000e+00 5657.0
4 TraesCS5D01G153000 chr5A 98.870 531 6 0 4184 4714 311673882 311673352 0.000000e+00 948.0
5 TraesCS5D01G153000 chr5A 83.369 469 70 3 11 471 311678288 311677820 1.210000e-115 427.0
6 TraesCS5D01G153000 chr5A 100.000 43 0 0 4018 4060 311673923 311673881 3.910000e-11 80.5
7 TraesCS5D01G153000 chr5B 91.814 2883 164 29 171 3008 256617996 256615141 0.000000e+00 3951.0
8 TraesCS5D01G153000 chr5B 94.353 974 51 3 3009 3982 256615108 256614139 0.000000e+00 1491.0
9 TraesCS5D01G153000 chr5B 89.831 531 27 6 4184 4714 256614067 256613564 0.000000e+00 656.0
10 TraesCS5D01G153000 chr3B 97.163 141 4 0 4046 4186 76508238 76508378 6.100000e-59 239.0
11 TraesCS5D01G153000 chr3B 83.846 130 20 1 1891 2020 264009191 264009319 6.410000e-24 122.0
12 TraesCS5D01G153000 chr2B 93.789 161 7 3 4031 4189 199013881 199013722 6.100000e-59 239.0
13 TraesCS5D01G153000 chr7D 99.237 131 1 0 4057 4187 135760632 135760762 2.190000e-58 237.0
14 TraesCS5D01G153000 chr7D 95.804 143 4 2 4056 4197 576290198 576290339 3.670000e-56 230.0
15 TraesCS5D01G153000 chr3D 99.237 131 1 0 4056 4186 91666579 91666449 2.190000e-58 237.0
16 TraesCS5D01G153000 chr3D 84.127 126 20 0 1891 2016 185236321 185236446 6.410000e-24 122.0
17 TraesCS5D01G153000 chr7B 98.507 134 1 1 4054 4187 680907569 680907437 7.890000e-58 235.0
18 TraesCS5D01G153000 chr6A 92.903 155 10 1 4038 4191 330471175 330471329 1.710000e-54 224.0
19 TraesCS5D01G153000 chr3A 83.846 130 20 1 1891 2020 244351958 244352086 6.410000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G153000 chr5D 241843549 241848262 4713 True 8706.000000 8706 100.000000 1 4714 1 chr5D.!!$R1 4713
1 TraesCS5D01G153000 chr5A 311673352 311678288 4936 True 1778.125000 5657 94.468000 11 4714 4 chr5A.!!$R1 4703
2 TraesCS5D01G153000 chr5B 256613564 256617996 4432 True 2032.666667 3951 91.999333 171 4714 3 chr5B.!!$R1 4543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.109412 GTCGAGACACCCTACCGTTG 60.109 60.0 0.00 0.0 0.00 4.10 F
643 977 0.109781 CGAAGTGCGTGGGAAAATGG 60.110 55.0 0.00 0.0 34.64 3.16 F
1230 1565 0.466555 CGTCCCCCAGGTTTTTCACA 60.467 55.0 0.00 0.0 0.00 3.58 F
1607 1943 0.818040 GGCTGAAACCAACAGGACGT 60.818 55.0 0.00 0.0 36.09 4.34 F
2730 3077 0.457337 CGTCGGTGGCCTAACAGTAC 60.457 60.0 3.32 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1063 1398 1.029681 ACGTTGTTTCCTTTCCAGGC 58.970 50.000 0.00 0.0 40.58 4.85 R
1663 1999 1.202879 TGGCGAAGATCACAAGGGTTT 60.203 47.619 0.00 0.0 0.00 3.27 R
2167 2506 4.020128 AGGCTAGGTCTGGACTTTTACTTG 60.020 45.833 0.67 0.0 0.00 3.16 R
3036 3415 5.163519 GCATTGCAATTAACTCCTACACCAT 60.164 40.000 9.83 0.0 0.00 3.55 R
4059 4516 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.673333 TTCACCGACGTAGCCGACTA 60.673 55.000 0.00 0.00 37.88 2.59
31 32 2.532843 AGCCGACTAGGTCCTTGTAAA 58.467 47.619 5.92 0.00 43.70 2.01
36 37 4.648307 CCGACTAGGTCCTTGTAAACCTAT 59.352 45.833 5.92 0.00 44.92 2.57
39 40 5.347978 ACTAGGTCCTTGTAAACCTATGGT 58.652 41.667 3.93 0.00 44.92 3.55
41 42 5.175388 AGGTCCTTGTAAACCTATGGTTC 57.825 43.478 2.22 0.00 46.20 3.62
43 44 5.045797 AGGTCCTTGTAAACCTATGGTTCTC 60.046 44.000 2.22 0.72 46.20 2.87
45 46 4.773674 TCCTTGTAAACCTATGGTTCTCGA 59.226 41.667 2.22 0.00 46.20 4.04
50 51 7.591421 TGTAAACCTATGGTTCTCGATATCA 57.409 36.000 3.12 0.00 46.20 2.15
52 53 9.304335 TGTAAACCTATGGTTCTCGATATCATA 57.696 33.333 3.12 0.00 46.20 2.15
120 121 6.876155 TCGGTAATACCTATGCTTTGTACAA 58.124 36.000 3.59 3.59 35.66 2.41
126 127 4.672899 ACCTATGCTTTGTACAACCCAAT 58.327 39.130 8.07 2.94 0.00 3.16
135 136 4.891627 TGTACAACCCAATCGCAATATG 57.108 40.909 0.00 0.00 0.00 1.78
136 137 2.869233 ACAACCCAATCGCAATATGC 57.131 45.000 0.00 0.00 40.69 3.14
137 138 1.408702 ACAACCCAATCGCAATATGCC 59.591 47.619 0.00 0.00 41.12 4.40
143 144 2.544277 CCAATCGCAATATGCCCACAAG 60.544 50.000 0.00 0.00 41.12 3.16
174 175 4.510571 GAATGTTACCACATACGAAGGGT 58.489 43.478 0.00 0.00 43.34 4.34
179 180 2.253610 ACCACATACGAAGGGTCTGAA 58.746 47.619 0.00 0.00 0.00 3.02
191 192 2.576648 AGGGTCTGAACCTGGGTAAATC 59.423 50.000 14.80 0.00 45.66 2.17
199 200 4.349636 TGAACCTGGGTAAATCTTGTCTCA 59.650 41.667 0.00 0.00 0.00 3.27
217 218 6.202331 TGTCTCATGTTTCCCCTCTAATCTA 58.798 40.000 0.00 0.00 0.00 1.98
237 238 1.924320 CTCACCTCGTCGAGACACCC 61.924 65.000 23.74 0.00 0.00 4.61
242 243 1.703438 CTCGTCGAGACACCCTACCG 61.703 65.000 17.52 0.00 0.00 4.02
244 245 1.580845 CGTCGAGACACCCTACCGTT 61.581 60.000 4.02 0.00 0.00 4.44
245 246 0.109412 GTCGAGACACCCTACCGTTG 60.109 60.000 0.00 0.00 0.00 4.10
256 257 2.364647 CCCTACCGTTGGAATCTACTCC 59.635 54.545 0.00 0.00 35.88 3.85
260 261 1.475280 CCGTTGGAATCTACTCCGACA 59.525 52.381 10.01 0.00 46.62 4.35
261 262 2.100916 CCGTTGGAATCTACTCCGACAT 59.899 50.000 10.01 0.00 46.62 3.06
274 275 3.378112 ACTCCGACATATGGTGCATTTTG 59.622 43.478 7.80 0.00 0.00 2.44
275 276 3.351740 TCCGACATATGGTGCATTTTGT 58.648 40.909 7.80 0.00 0.00 2.83
295 296 4.954875 TGTACCTGCAAAGGGAAATTTTG 58.045 39.130 0.00 0.00 38.30 2.44
340 346 2.105821 ACAACTTCCATGGAACTTCCGA 59.894 45.455 23.63 1.03 40.17 4.55
352 358 5.243207 TGGAACTTCCGATTCCTAAGTTTC 58.757 41.667 10.64 9.68 45.14 2.78
380 389 6.509418 TTCATCGGTTTTTAGAATTCCAGG 57.491 37.500 0.65 0.00 0.00 4.45
385 394 6.242396 TCGGTTTTTAGAATTCCAGGAATCA 58.758 36.000 15.53 1.29 30.29 2.57
394 403 7.888250 AGAATTCCAGGAATCAAATAGAACC 57.112 36.000 15.53 0.00 30.29 3.62
643 977 0.109781 CGAAGTGCGTGGGAAAATGG 60.110 55.000 0.00 0.00 34.64 3.16
814 1149 3.995048 GCCTTAAACAAGAGCGAAGTACT 59.005 43.478 0.00 0.00 0.00 2.73
907 1242 2.513204 CCTCACTGGCCAGCATCG 60.513 66.667 33.06 18.23 0.00 3.84
953 1288 4.081198 AGGCACACACAGAAAAATTCCAAA 60.081 37.500 0.00 0.00 0.00 3.28
1063 1398 2.187946 CCAAGCGGCTCTACCAGG 59.812 66.667 1.45 0.00 39.03 4.45
1064 1399 2.512515 CAAGCGGCTCTACCAGGC 60.513 66.667 1.45 0.00 44.60 4.85
1091 1426 5.388786 GGAAAGGAAACAACGTACGTACATC 60.389 44.000 23.12 16.45 0.00 3.06
1129 1464 2.665603 GCCTTCTTCTCCGTGCCT 59.334 61.111 0.00 0.00 0.00 4.75
1138 1473 1.118965 TCTCCGTGCCTTGGTCAGAA 61.119 55.000 0.00 0.00 0.00 3.02
1166 1501 2.736995 GCGCCGTGCAACTGTAGA 60.737 61.111 0.00 0.00 45.45 2.59
1167 1502 2.100631 GCGCCGTGCAACTGTAGAT 61.101 57.895 0.00 0.00 45.45 1.98
1168 1503 0.804544 GCGCCGTGCAACTGTAGATA 60.805 55.000 0.00 0.00 45.45 1.98
1169 1504 1.200483 CGCCGTGCAACTGTAGATAG 58.800 55.000 0.00 0.00 31.75 2.08
1170 1505 0.931005 GCCGTGCAACTGTAGATAGC 59.069 55.000 0.00 0.00 31.75 2.97
1171 1506 1.571919 CCGTGCAACTGTAGATAGCC 58.428 55.000 0.00 0.00 31.75 3.93
1172 1507 1.137086 CCGTGCAACTGTAGATAGCCT 59.863 52.381 0.00 0.00 31.75 4.58
1173 1508 2.418746 CCGTGCAACTGTAGATAGCCTT 60.419 50.000 0.00 0.00 31.75 4.35
1174 1509 3.262420 CGTGCAACTGTAGATAGCCTTT 58.738 45.455 0.00 0.00 31.75 3.11
1175 1510 3.307242 CGTGCAACTGTAGATAGCCTTTC 59.693 47.826 0.00 0.00 31.75 2.62
1176 1511 4.253685 GTGCAACTGTAGATAGCCTTTCA 58.746 43.478 0.00 0.00 0.00 2.69
1177 1512 4.331168 GTGCAACTGTAGATAGCCTTTCAG 59.669 45.833 0.00 0.00 34.31 3.02
1178 1513 3.311048 GCAACTGTAGATAGCCTTTCAGC 59.689 47.826 0.00 0.00 32.67 4.26
1230 1565 0.466555 CGTCCCCCAGGTTTTTCACA 60.467 55.000 0.00 0.00 0.00 3.58
1253 1588 2.094957 GTGTGAGAGAGCAGAGTGTACC 60.095 54.545 0.00 0.00 0.00 3.34
1254 1589 2.163509 GTGAGAGAGCAGAGTGTACCA 58.836 52.381 0.00 0.00 0.00 3.25
1255 1590 2.094957 GTGAGAGAGCAGAGTGTACCAC 60.095 54.545 0.00 0.00 34.10 4.16
1256 1591 1.131504 GAGAGAGCAGAGTGTACCACG 59.868 57.143 0.00 0.00 39.64 4.94
1567 1903 1.955778 CAATGGCTGGAGTCAACAACA 59.044 47.619 0.00 0.00 31.21 3.33
1568 1904 1.901591 ATGGCTGGAGTCAACAACAG 58.098 50.000 0.00 0.00 31.21 3.16
1582 1918 1.242076 CAACAGTTCCAGCCTTCAGG 58.758 55.000 0.00 0.00 38.53 3.86
1604 1940 0.843309 TGAGGCTGAAACCAACAGGA 59.157 50.000 0.00 0.00 36.09 3.86
1607 1943 0.818040 GGCTGAAACCAACAGGACGT 60.818 55.000 0.00 0.00 36.09 4.34
1637 1973 2.423577 ACTTACGATTCCAGTTGCCAC 58.576 47.619 0.00 0.00 0.00 5.01
1642 1978 4.689612 ACGATTCCAGTTGCCACTATAT 57.310 40.909 0.00 0.00 0.00 0.86
1663 1999 2.177394 TACCAGATGCAACGCTGAAA 57.823 45.000 14.05 1.95 34.06 2.69
1676 2012 2.293399 ACGCTGAAAAACCCTTGTGATC 59.707 45.455 0.00 0.00 0.00 2.92
1886 2224 1.974265 TGAATGGCTTCACGGTGAAA 58.026 45.000 22.60 10.21 35.73 2.69
1973 2311 1.583054 ACTGCGTCCAGAAGTTTGAC 58.417 50.000 0.00 0.00 41.77 3.18
2148 2487 4.841246 AGTAAGAGCCAGGAAGAGAAAAGA 59.159 41.667 0.00 0.00 0.00 2.52
2446 2792 8.890410 AACTAAGTCCTGAACTATACCTAACA 57.110 34.615 0.00 0.00 37.17 2.41
2505 2851 4.342951 CAGTTGGCCCATCATAATCACAAT 59.657 41.667 0.00 0.00 0.00 2.71
2678 3025 5.562890 GCGCAAGGAAGTCTATTCTTTTGTT 60.563 40.000 0.30 0.00 38.28 2.83
2730 3077 0.457337 CGTCGGTGGCCTAACAGTAC 60.457 60.000 3.32 0.00 0.00 2.73
2990 3337 1.341209 GTTTCCTGCCCTGGTGAAAAG 59.659 52.381 0.00 0.00 0.00 2.27
3035 3414 4.516321 TGAGTGGATTGTTTGTGATGTCTG 59.484 41.667 0.00 0.00 0.00 3.51
3036 3415 4.717877 AGTGGATTGTTTGTGATGTCTGA 58.282 39.130 0.00 0.00 0.00 3.27
3348 3727 9.565090 CAAGGGAAAAGATTGATACAGATATGA 57.435 33.333 0.00 0.00 0.00 2.15
3695 4074 0.325296 ATAGAAGTCCCGCCCAGTCA 60.325 55.000 0.00 0.00 0.00 3.41
3855 4235 8.877864 AATGATTTAAGGAGTGTAATGAACCA 57.122 30.769 0.00 0.00 0.00 3.67
4069 4526 8.896722 ATAACAGAAATATATACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
4070 4527 6.837471 ACAGAAATATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
4071 4528 5.715753 ACAGAAATATATACTCCCTCCGTCC 59.284 44.000 0.00 0.00 0.00 4.79
4072 4529 5.127356 CAGAAATATATACTCCCTCCGTCCC 59.873 48.000 0.00 0.00 0.00 4.46
4073 4530 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
4074 4531 4.687262 ATATATACTCCCTCCGTCCCAA 57.313 45.455 0.00 0.00 0.00 4.12
4075 4532 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4076 4533 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4077 4534 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4078 4535 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4079 4536 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4080 4537 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4081 4538 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4082 4539 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4083 4540 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4084 4541 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4085 4542 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4086 4543 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4087 4544 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4088 4545 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4089 4546 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4090 4547 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4091 4548 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4092 4549 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4093 4550 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4094 4551 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4095 4552 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4096 4553 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4104 4561 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
4105 4562 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
4106 4563 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
4107 4564 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
4108 4565 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
4109 4566 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
4124 4581 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
4125 4582 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
4126 4583 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
4127 4584 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
4128 4585 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
4129 4586 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
4139 4596 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
4140 4597 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
4141 4598 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
4142 4599 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
4145 4602 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
4148 4605 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
4149 4606 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
4160 4617 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
4161 4618 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
4163 4620 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
4164 4621 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
4172 4629 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4173 4630 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4174 4631 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4175 4632 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4176 4633 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
4177 4634 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4178 4635 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4179 4636 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4180 4637 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4181 4638 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4182 4639 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4413 4870 4.437239 CTGCTTACAGCTATAGCACACTT 58.563 43.478 26.07 2.34 42.97 3.16
4659 5116 0.749649 ACGGTGCATGAAAAGCCAAA 59.250 45.000 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.673333 TAGTCGGCTACGTCGGTGAA 60.673 55.000 0.00 0.00 41.85 3.18
1 2 1.079197 TAGTCGGCTACGTCGGTGA 60.079 57.895 0.00 0.00 41.85 4.02
2 3 1.351012 CTAGTCGGCTACGTCGGTG 59.649 63.158 0.00 0.00 41.85 4.94
3 4 1.817099 CCTAGTCGGCTACGTCGGT 60.817 63.158 0.00 0.00 41.85 4.69
4 5 1.770085 GACCTAGTCGGCTACGTCGG 61.770 65.000 9.85 4.69 41.85 4.79
5 6 1.640604 GACCTAGTCGGCTACGTCG 59.359 63.158 9.85 0.00 41.85 5.12
6 7 0.463474 AGGACCTAGTCGGCTACGTC 60.463 60.000 15.28 15.28 41.85 4.34
7 8 0.034670 AAGGACCTAGTCGGCTACGT 60.035 55.000 0.00 0.00 41.85 3.57
8 9 0.381089 CAAGGACCTAGTCGGCTACG 59.619 60.000 0.00 0.00 42.74 3.51
9 10 1.472188 ACAAGGACCTAGTCGGCTAC 58.528 55.000 0.00 0.00 35.61 3.58
19 20 4.850386 AGAACCATAGGTTTACAAGGACCT 59.150 41.667 2.55 0.30 46.95 3.85
23 24 5.080969 TCGAGAACCATAGGTTTACAAGG 57.919 43.478 2.55 0.00 46.95 3.61
45 46 9.752228 AGCTCGATCCTGACATATATATGATAT 57.248 33.333 26.05 12.55 37.15 1.63
50 51 7.386573 CGACTAGCTCGATCCTGACATATATAT 59.613 40.741 8.47 0.00 46.14 0.86
52 53 5.525745 CGACTAGCTCGATCCTGACATATAT 59.474 44.000 8.47 0.00 46.14 0.86
57 58 1.134491 TCGACTAGCTCGATCCTGACA 60.134 52.381 11.68 0.00 46.75 3.58
87 88 7.403671 AGCATAGGTATTACCGAGAGATTCTA 58.596 38.462 7.21 0.00 44.90 2.10
89 90 6.518208 AGCATAGGTATTACCGAGAGATTC 57.482 41.667 7.21 0.00 44.90 2.52
97 98 6.018507 GGTTGTACAAAGCATAGGTATTACCG 60.019 42.308 10.51 0.00 44.90 4.02
110 111 1.268352 TGCGATTGGGTTGTACAAAGC 59.732 47.619 10.51 8.01 36.64 3.51
120 121 0.106268 TGGGCATATTGCGATTGGGT 60.106 50.000 0.00 0.00 46.21 4.51
126 127 0.679321 TGCTTGTGGGCATATTGCGA 60.679 50.000 0.00 0.00 46.21 5.10
135 136 3.305516 CCACCCTTGCTTGTGGGC 61.306 66.667 0.70 0.00 46.67 5.36
143 144 1.917872 TGGTAACATTCCACCCTTGC 58.082 50.000 0.00 0.00 46.17 4.01
156 157 3.194116 TCAGACCCTTCGTATGTGGTAAC 59.806 47.826 0.00 0.00 35.13 2.50
174 175 4.597507 AGACAAGATTTACCCAGGTTCAGA 59.402 41.667 0.00 0.00 0.00 3.27
179 180 4.289672 ACATGAGACAAGATTTACCCAGGT 59.710 41.667 0.00 0.00 0.00 4.00
191 192 3.710209 AGAGGGGAAACATGAGACAAG 57.290 47.619 0.00 0.00 0.00 3.16
199 200 5.367060 GGTGAGTAGATTAGAGGGGAAACAT 59.633 44.000 0.00 0.00 0.00 2.71
217 218 1.235948 GGTGTCTCGACGAGGTGAGT 61.236 60.000 23.92 0.00 33.88 3.41
237 238 2.947652 TCGGAGTAGATTCCAACGGTAG 59.052 50.000 0.00 0.00 37.05 3.18
242 243 5.221461 ACCATATGTCGGAGTAGATTCCAAC 60.221 44.000 1.24 0.00 37.05 3.77
244 245 4.280929 CACCATATGTCGGAGTAGATTCCA 59.719 45.833 1.24 0.00 37.05 3.53
245 246 4.810790 CACCATATGTCGGAGTAGATTCC 58.189 47.826 1.24 0.00 0.00 3.01
256 257 4.335315 AGGTACAAAATGCACCATATGTCG 59.665 41.667 1.24 0.00 36.24 4.35
260 261 4.022603 TGCAGGTACAAAATGCACCATAT 58.977 39.130 9.40 0.00 44.56 1.78
261 262 3.425659 TGCAGGTACAAAATGCACCATA 58.574 40.909 9.40 0.00 44.56 2.74
274 275 5.208463 TCAAAATTTCCCTTTGCAGGTAC 57.792 39.130 0.00 0.00 38.79 3.34
275 276 4.898861 ACTCAAAATTTCCCTTTGCAGGTA 59.101 37.500 0.00 0.00 38.79 3.08
279 280 5.122519 GGAAACTCAAAATTTCCCTTTGCA 58.877 37.500 5.37 0.00 46.42 4.08
295 296 3.489738 CGATTGCATCATTGGGGAAACTC 60.490 47.826 0.00 0.00 0.00 3.01
305 306 4.218200 TGGAAGTTGTTCGATTGCATCATT 59.782 37.500 0.00 0.00 32.92 2.57
306 307 3.758023 TGGAAGTTGTTCGATTGCATCAT 59.242 39.130 0.00 0.00 32.92 2.45
340 346 9.462606 AACCGATGAATAAAGAAACTTAGGAAT 57.537 29.630 0.00 0.00 0.00 3.01
379 388 7.703058 TTTTGGAGAGGTTCTATTTGATTCC 57.297 36.000 0.00 0.00 0.00 3.01
380 389 8.246871 CCTTTTTGGAGAGGTTCTATTTGATTC 58.753 37.037 0.00 0.00 38.35 2.52
519 852 3.006859 CCTATACACATCAAGCCGATCCA 59.993 47.826 0.00 0.00 29.21 3.41
530 863 3.063997 GCAACACACAGCCTATACACATC 59.936 47.826 0.00 0.00 0.00 3.06
807 1141 1.799548 GCTGCTACGCTGGAGTACTTC 60.800 57.143 0.00 0.00 0.00 3.01
814 1149 4.435436 CACCGCTGCTACGCTGGA 62.435 66.667 0.00 0.00 0.00 3.86
899 1234 4.899239 GAGACGGGCCGATGCTGG 62.899 72.222 35.78 0.83 37.74 4.85
915 1250 2.113433 GCCTGGCTCTAGTCGACGA 61.113 63.158 12.43 3.61 0.00 4.20
1063 1398 1.029681 ACGTTGTTTCCTTTCCAGGC 58.970 50.000 0.00 0.00 40.58 4.85
1064 1399 2.222445 CGTACGTTGTTTCCTTTCCAGG 59.778 50.000 7.22 0.00 42.50 4.45
1091 1426 1.261238 AAGAGGGGAGTCGAGCAAGG 61.261 60.000 0.00 0.00 0.00 3.61
1129 1464 1.609208 GCCAAAGCTCTTCTGACCAA 58.391 50.000 0.00 0.00 35.50 3.67
1154 1489 4.253685 TGAAAGGCTATCTACAGTTGCAC 58.746 43.478 0.00 0.00 0.00 4.57
1157 1492 4.764172 AGCTGAAAGGCTATCTACAGTTG 58.236 43.478 0.00 0.00 41.16 3.16
1158 1493 6.546428 TTAGCTGAAAGGCTATCTACAGTT 57.454 37.500 0.00 0.00 43.21 3.16
1160 1495 7.712639 TGATTTTAGCTGAAAGGCTATCTACAG 59.287 37.037 9.70 0.00 43.21 2.74
1161 1496 7.564793 TGATTTTAGCTGAAAGGCTATCTACA 58.435 34.615 9.70 0.00 43.21 2.74
1162 1497 7.172361 CCTGATTTTAGCTGAAAGGCTATCTAC 59.828 40.741 9.70 0.00 43.21 2.59
1163 1498 7.220030 CCTGATTTTAGCTGAAAGGCTATCTA 58.780 38.462 9.70 0.00 43.21 1.98
1164 1499 6.060788 CCTGATTTTAGCTGAAAGGCTATCT 58.939 40.000 9.70 0.00 43.21 1.98
1166 1501 5.103940 TCCCTGATTTTAGCTGAAAGGCTAT 60.104 40.000 9.70 0.00 43.21 2.97
1167 1502 4.227300 TCCCTGATTTTAGCTGAAAGGCTA 59.773 41.667 9.70 0.00 42.97 3.93
1168 1503 3.010584 TCCCTGATTTTAGCTGAAAGGCT 59.989 43.478 9.70 0.00 45.29 4.58
1169 1504 3.356290 TCCCTGATTTTAGCTGAAAGGC 58.644 45.455 9.70 5.00 0.00 4.35
1170 1505 5.653769 TGAATCCCTGATTTTAGCTGAAAGG 59.346 40.000 9.70 5.28 31.89 3.11
1171 1506 6.764308 TGAATCCCTGATTTTAGCTGAAAG 57.236 37.500 9.70 0.00 31.89 2.62
1172 1507 6.891361 TCATGAATCCCTGATTTTAGCTGAAA 59.109 34.615 6.09 6.09 31.89 2.69
1173 1508 6.425735 TCATGAATCCCTGATTTTAGCTGAA 58.574 36.000 0.00 0.00 31.89 3.02
1174 1509 6.005066 TCATGAATCCCTGATTTTAGCTGA 57.995 37.500 0.00 0.00 31.89 4.26
1175 1510 6.704289 TTCATGAATCCCTGATTTTAGCTG 57.296 37.500 3.38 0.00 31.89 4.24
1176 1511 6.183360 GCTTTCATGAATCCCTGATTTTAGCT 60.183 38.462 9.40 0.00 31.89 3.32
1177 1512 5.981915 GCTTTCATGAATCCCTGATTTTAGC 59.018 40.000 9.40 6.77 31.89 3.09
1178 1513 7.201145 CAGCTTTCATGAATCCCTGATTTTAG 58.799 38.462 18.38 7.52 31.89 1.85
1179 1514 6.406177 GCAGCTTTCATGAATCCCTGATTTTA 60.406 38.462 23.60 2.46 31.89 1.52
1180 1515 5.626116 GCAGCTTTCATGAATCCCTGATTTT 60.626 40.000 23.60 0.00 31.89 1.82
1230 1565 2.246469 ACACTCTGCTCTCTCACACAT 58.754 47.619 0.00 0.00 0.00 3.21
1253 1588 2.534298 AGCGAAGAATGATCTGTCGTG 58.466 47.619 0.00 0.00 37.92 4.35
1254 1589 2.949451 AGCGAAGAATGATCTGTCGT 57.051 45.000 0.00 0.00 37.92 4.34
1255 1590 3.443037 AGAAGCGAAGAATGATCTGTCG 58.557 45.455 0.00 0.00 38.29 4.35
1256 1591 4.503734 CAGAGAAGCGAAGAATGATCTGTC 59.496 45.833 0.00 0.00 35.59 3.51
1604 1940 2.903798 TCGTAAGTTTGAAACCCACGT 58.096 42.857 22.71 0.00 39.04 4.49
1607 1943 4.462133 TGGAATCGTAAGTTTGAAACCCA 58.538 39.130 4.14 0.00 39.48 4.51
1637 1973 6.564328 TCAGCGTTGCATCTGGTATATATAG 58.436 40.000 10.11 0.00 0.00 1.31
1642 1978 3.535280 TTCAGCGTTGCATCTGGTATA 57.465 42.857 10.11 0.00 0.00 1.47
1663 1999 1.202879 TGGCGAAGATCACAAGGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
1832 2170 3.564027 CGGCGAAACCTCATCCGC 61.564 66.667 0.00 0.00 46.04 5.54
1886 2224 2.213499 CAGGTCTCGCAAAACTTGAGT 58.787 47.619 0.00 0.00 0.00 3.41
1973 2311 3.528217 AACCCATGGGCAGTGGTGG 62.528 63.158 31.73 3.80 39.32 4.61
2009 2347 5.143376 AGCAATAACCGTGTGTACTTACT 57.857 39.130 0.00 0.00 0.00 2.24
2163 2502 5.382664 AGGTCTGGACTTTTACTTGGAAA 57.617 39.130 0.67 0.00 0.00 3.13
2164 2503 5.512576 GCTAGGTCTGGACTTTTACTTGGAA 60.513 44.000 0.67 0.00 0.00 3.53
2165 2504 4.020485 GCTAGGTCTGGACTTTTACTTGGA 60.020 45.833 0.67 0.00 0.00 3.53
2166 2505 4.254492 GCTAGGTCTGGACTTTTACTTGG 58.746 47.826 0.67 0.00 0.00 3.61
2167 2506 4.020128 AGGCTAGGTCTGGACTTTTACTTG 60.020 45.833 0.67 0.00 0.00 3.16
2168 2507 4.168883 AGGCTAGGTCTGGACTTTTACTT 58.831 43.478 0.67 0.00 0.00 2.24
2278 2618 6.647895 AGTTTTGTAGTACTGTTACAATCCCG 59.352 38.462 5.39 0.00 39.84 5.14
2400 2746 6.165577 AGTTCACAAATCTGTTTGCTTGTTT 58.834 32.000 1.12 0.00 46.84 2.83
2446 2792 8.432805 CCTCAAAAGTCAACTAGTGGGATATAT 58.567 37.037 0.00 0.00 0.00 0.86
2678 3025 9.725019 ACAACAATTGAAGTGTAGATGATTAGA 57.275 29.630 13.59 0.00 0.00 2.10
2690 3037 5.757886 ACGAACCATACAACAATTGAAGTG 58.242 37.500 13.59 9.46 0.00 3.16
2730 3077 6.822667 AGTACTGATCAGATAGAGATGCAG 57.177 41.667 29.27 0.00 32.18 4.41
3035 3414 6.498304 CATTGCAATTAACTCCTACACCATC 58.502 40.000 9.83 0.00 0.00 3.51
3036 3415 5.163519 GCATTGCAATTAACTCCTACACCAT 60.164 40.000 9.83 0.00 0.00 3.55
3114 3493 6.425417 TCGTATGTTGTCTGCAGAATTTGTAA 59.575 34.615 20.19 4.47 0.00 2.41
3348 3727 5.187687 CCCTACGAGTACTTCTTTCTCTCT 58.812 45.833 0.00 0.00 0.00 3.10
3695 4074 9.270640 GATACTTATCAGCTCATGTCTTTCAAT 57.729 33.333 0.00 0.00 32.98 2.57
3906 4289 2.591923 TGCAAGGTCAACATGCCTTAA 58.408 42.857 2.44 0.00 42.68 1.85
4016 4417 5.464030 TTTGTGAAGTACTCCCTCTGTAC 57.536 43.478 0.00 0.00 40.19 2.90
4058 4515 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4059 4516 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4060 4517 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4061 4518 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4062 4519 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4063 4520 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4064 4521 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4065 4522 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4066 4523 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
4067 4524 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
4068 4525 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4069 4526 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4070 4527 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
4078 4535 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
4079 4536 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
4080 4537 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
4081 4538 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
4082 4539 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
4083 4540 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
4099 4556 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
4100 4557 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
4101 4558 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
4102 4559 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
4103 4560 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
4113 4570 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
4114 4571 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
4115 4572 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
4116 4573 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
4119 4576 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
4122 4579 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
4123 4580 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
4134 4591 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
4135 4592 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
4137 4594 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
4138 4595 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
4146 4603 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
4147 4604 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4148 4605 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4149 4606 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
4150 4607 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
4151 4608 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
4152 4609 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
4153 4610 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
4154 4611 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
4155 4612 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4156 4613 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4157 4614 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4158 4615 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4159 4616 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4160 4617 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4161 4618 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4162 4619 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4163 4620 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4164 4621 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4165 4622 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4166 4623 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4167 4624 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
4168 4625 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
4169 4626 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
4170 4627 5.279859 CCTTAAATTATACTCCCTCCGTCCC 60.280 48.000 0.00 0.00 0.00 4.46
4171 4628 5.279859 CCCTTAAATTATACTCCCTCCGTCC 60.280 48.000 0.00 0.00 0.00 4.79
4172 4629 5.306419 ACCCTTAAATTATACTCCCTCCGTC 59.694 44.000 0.00 0.00 0.00 4.79
4173 4630 5.222086 ACCCTTAAATTATACTCCCTCCGT 58.778 41.667 0.00 0.00 0.00 4.69
4174 4631 5.820404 ACCCTTAAATTATACTCCCTCCG 57.180 43.478 0.00 0.00 0.00 4.63
4175 4632 8.496916 TGTTTACCCTTAAATTATACTCCCTCC 58.503 37.037 0.00 0.00 29.82 4.30
4176 4633 9.557061 CTGTTTACCCTTAAATTATACTCCCTC 57.443 37.037 0.00 0.00 29.82 4.30
4177 4634 9.287818 TCTGTTTACCCTTAAATTATACTCCCT 57.712 33.333 0.00 0.00 29.82 4.20
4178 4635 9.910267 TTCTGTTTACCCTTAAATTATACTCCC 57.090 33.333 0.00 0.00 29.82 4.30
4659 5116 5.163301 CCTTGTAATAGTGGTCATAGCACCT 60.163 44.000 5.67 0.00 46.99 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.