Multiple sequence alignment - TraesCS5D01G152900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G152900 chr5D 100.000 4707 0 0 1 4707 241840260 241844966 0.000000e+00 8693.0
1 TraesCS5D01G152900 chr5D 95.732 164 5 1 1514 1675 499809908 499809745 3.610000e-66 263.0
2 TraesCS5D01G152900 chr5D 95.570 158 5 2 3817 3972 115924650 115924493 7.820000e-63 252.0
3 TraesCS5D01G152900 chr5D 95.205 146 7 0 3817 3962 469424996 469425141 1.020000e-56 231.0
4 TraesCS5D01G152900 chr5D 97.710 131 2 1 2277 2407 241842410 241842539 1.700000e-54 224.0
5 TraesCS5D01G152900 chr5D 97.710 131 2 1 2151 2280 241842536 241842666 1.700000e-54 224.0
6 TraesCS5D01G152900 chr5D 89.474 95 8 1 239 333 248588863 248588771 8.270000e-23 119.0
7 TraesCS5D01G152900 chr5A 97.929 1545 29 3 2277 3820 311672340 311673882 0.000000e+00 2673.0
8 TraesCS5D01G152900 chr5A 98.481 724 6 3 3988 4707 311673981 311674703 0.000000e+00 1271.0
9 TraesCS5D01G152900 chr5A 93.858 749 24 6 783 1516 311671129 311671870 0.000000e+00 1109.0
10 TraesCS5D01G152900 chr5A 97.529 607 12 1 1674 2280 311671866 311672469 0.000000e+00 1035.0
11 TraesCS5D01G152900 chr5A 89.850 266 20 3 429 693 311670822 311671081 7.550000e-88 335.0
12 TraesCS5D01G152900 chr5A 85.882 255 23 5 329 581 311670315 311670558 4.670000e-65 259.0
13 TraesCS5D01G152900 chr5A 90.751 173 14 2 1514 1686 320214244 320214414 3.660000e-56 230.0
14 TraesCS5D01G152900 chr5A 92.053 151 10 2 1 151 311669945 311670093 1.330000e-50 211.0
15 TraesCS5D01G152900 chr5A 84.507 142 20 2 72 213 311670093 311670232 6.350000e-29 139.0
16 TraesCS5D01G152900 chr5A 100.000 43 0 0 3944 3986 311673881 311673923 3.900000e-11 80.5
17 TraesCS5D01G152900 chr5B 89.430 1192 72 22 235 1401 256611914 256613076 0.000000e+00 1454.0
18 TraesCS5D01G152900 chr5B 94.023 686 37 3 4022 4707 256614139 256614820 0.000000e+00 1037.0
19 TraesCS5D01G152900 chr5B 89.358 592 35 7 3229 3820 256613504 256614067 0.000000e+00 719.0
20 TraesCS5D01G152900 chr5B 93.902 164 10 0 1514 1677 435948215 435948052 1.010000e-61 248.0
21 TraesCS5D01G152900 chr5B 82.374 278 37 8 443 717 51190204 51190472 1.020000e-56 231.0
22 TraesCS5D01G152900 chr5B 89.333 150 12 2 3087 3232 256613198 256613347 8.040000e-43 185.0
23 TraesCS5D01G152900 chr5B 91.525 118 9 1 1 118 256611231 256611347 1.360000e-35 161.0
24 TraesCS5D01G152900 chr5B 90.598 117 9 1 112 226 256611731 256611847 2.270000e-33 154.0
25 TraesCS5D01G152900 chr5B 87.619 105 13 0 122 226 129029158 129029262 6.400000e-24 122.0
26 TraesCS5D01G152900 chr5B 85.841 113 15 1 115 226 475344735 475344847 8.270000e-23 119.0
27 TraesCS5D01G152900 chr5B 76.585 205 34 9 624 826 476806455 476806647 3.000000e-17 100.0
28 TraesCS5D01G152900 chr3D 84.343 396 42 9 444 826 424493352 424493740 2.070000e-98 370.0
29 TraesCS5D01G152900 chr3D 82.741 394 52 9 443 826 307224661 307224274 2.100000e-88 337.0
30 TraesCS5D01G152900 chr3D 99.237 131 1 0 3818 3948 91666449 91666579 2.190000e-58 237.0
31 TraesCS5D01G152900 chr3D 92.500 80 6 0 239 318 582266456 582266377 1.070000e-21 115.0
32 TraesCS5D01G152900 chr3D 90.385 52 4 1 1454 1504 576707922 576707973 3.040000e-07 67.6
33 TraesCS5D01G152900 chr2B 83.333 390 51 9 444 826 601433044 601432662 9.690000e-92 348.0
34 TraesCS5D01G152900 chr2B 93.789 161 7 3 3815 3973 199013722 199013881 6.090000e-59 239.0
35 TraesCS5D01G152900 chr3B 82.653 392 52 11 444 826 744599959 744600343 2.710000e-87 333.0
36 TraesCS5D01G152900 chr3B 81.980 394 55 10 441 824 399650850 399651237 2.110000e-83 320.0
37 TraesCS5D01G152900 chr3B 81.282 390 56 13 444 826 652290860 652291239 2.750000e-77 300.0
38 TraesCS5D01G152900 chr3B 93.023 172 11 1 1510 1680 752695278 752695449 2.810000e-62 250.0
39 TraesCS5D01G152900 chr3B 97.163 141 4 0 3818 3958 76508378 76508238 6.090000e-59 239.0
40 TraesCS5D01G152900 chr3B 94.118 51 3 0 1454 1504 438917085 438917135 1.400000e-10 78.7
41 TraesCS5D01G152900 chr7D 98.780 164 2 0 1514 1677 548776852 548777015 4.610000e-75 292.0
42 TraesCS5D01G152900 chr7D 99.237 131 1 0 3817 3947 135760762 135760632 2.190000e-58 237.0
43 TraesCS5D01G152900 chr7D 95.804 143 4 2 3807 3948 576290339 576290198 3.660000e-56 230.0
44 TraesCS5D01G152900 chr7D 90.588 85 8 0 236 320 49806812 49806896 3.850000e-21 113.0
45 TraesCS5D01G152900 chr2D 97.561 164 4 0 1514 1677 523154910 523155073 9.970000e-72 281.0
46 TraesCS5D01G152900 chr2D 87.200 125 16 0 319 443 541547414 541547538 4.910000e-30 143.0
47 TraesCS5D01G152900 chr2D 85.345 116 16 1 112 226 553908556 553908671 8.270000e-23 119.0
48 TraesCS5D01G152900 chr2D 91.566 83 7 0 236 318 553908774 553908856 1.070000e-21 115.0
49 TraesCS5D01G152900 chr1B 81.538 325 49 10 442 760 636256113 636256432 1.680000e-64 257.0
50 TraesCS5D01G152900 chr4A 93.671 158 10 0 1520 1677 574285413 574285256 2.190000e-58 237.0
51 TraesCS5D01G152900 chr4A 87.736 106 12 1 122 226 12206611 12206716 6.400000e-24 122.0
52 TraesCS5D01G152900 chr4A 86.364 110 13 2 119 226 719076178 719076287 8.270000e-23 119.0
53 TraesCS5D01G152900 chr7B 98.507 134 1 1 3817 3950 680907437 680907569 7.870000e-58 235.0
54 TraesCS5D01G152900 chr7B 81.395 172 28 3 2531 2700 244637872 244637703 2.280000e-28 137.0
55 TraesCS5D01G152900 chr6B 92.593 162 12 0 1520 1681 20869409 20869248 2.830000e-57 233.0
56 TraesCS5D01G152900 chr6B 87.097 124 16 0 319 442 347227270 347227147 1.770000e-29 141.0
57 TraesCS5D01G152900 chr6B 87.619 105 13 0 122 226 68385453 68385557 6.400000e-24 122.0
58 TraesCS5D01G152900 chr6B 93.750 48 2 1 779 826 711692239 711692285 2.350000e-08 71.3
59 TraesCS5D01G152900 chr4D 92.547 161 12 0 1517 1677 29317009 29317169 1.020000e-56 231.0
60 TraesCS5D01G152900 chr6A 92.903 155 10 1 3813 3966 330471329 330471175 1.700000e-54 224.0
61 TraesCS5D01G152900 chr2A 78.628 379 46 22 443 816 498037676 498038024 7.930000e-53 219.0
62 TraesCS5D01G152900 chr2A 87.736 106 12 1 122 226 620676121 620676016 6.400000e-24 122.0
63 TraesCS5D01G152900 chr2A 92.453 53 2 2 1454 1506 765191338 765191288 1.820000e-09 75.0
64 TraesCS5D01G152900 chr7A 87.121 132 16 1 319 449 493632814 493632683 1.060000e-31 148.0
65 TraesCS5D01G152900 chr7A 93.750 80 5 0 239 318 17210378 17210299 2.300000e-23 121.0
66 TraesCS5D01G152900 chr7A 92.500 80 6 0 239 318 419932480 419932559 1.070000e-21 115.0
67 TraesCS5D01G152900 chr1D 88.000 125 15 0 319 443 59557473 59557597 1.060000e-31 148.0
68 TraesCS5D01G152900 chr1D 90.698 86 6 1 240 323 203264944 203264859 3.850000e-21 113.0
69 TraesCS5D01G152900 chr1A 87.903 124 15 0 319 442 521902162 521902039 3.800000e-31 147.0
70 TraesCS5D01G152900 chr1A 87.200 125 16 0 319 443 510187992 510188116 4.910000e-30 143.0
71 TraesCS5D01G152900 chr4B 87.200 125 16 0 319 443 413123510 413123386 4.910000e-30 143.0
72 TraesCS5D01G152900 chrUn 93.750 80 5 0 239 318 89803060 89802981 2.300000e-23 121.0
73 TraesCS5D01G152900 chr6D 93.750 48 2 1 779 826 466549276 466549322 2.350000e-08 71.3
74 TraesCS5D01G152900 chr3A 93.478 46 3 0 1458 1503 23903176 23903221 8.450000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G152900 chr5D 241840260 241844966 4706 False 3047.000000 8693 98.473333 1 4707 3 chr5D.!!$F2 4706
1 TraesCS5D01G152900 chr5A 311669945 311674703 4758 False 790.277778 2673 93.343222 1 4707 9 chr5A.!!$F2 4706
2 TraesCS5D01G152900 chr5B 256611231 256614820 3589 False 618.333333 1454 90.711167 1 4707 6 chr5B.!!$F5 4706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 840 0.693622 TGACCTGGTTTAATGGCCGA 59.306 50.0 0.0 0.00 0.00 5.54 F
1406 2298 0.037232 AGTTCGTGGGAGCTTACTGC 60.037 55.0 0.0 0.00 43.29 4.40 F
2229 3121 0.178964 CCACAGCCAGAAAAGGGGAA 60.179 55.0 0.0 0.00 0.00 3.97 F
2254 3146 0.179062 CCTCTTCCGCCTGGATTGAG 60.179 60.0 0.0 7.46 45.91 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 3104 0.178961 GGTTCCCCTTTTCTGGCTGT 60.179 55.000 0.0 0.0 0.00 4.40 R
2302 3194 0.179073 CATAGGCACCCGACCTTCAG 60.179 60.000 0.0 0.0 38.81 3.02 R
3343 4430 0.749649 ACGGTGCATGAAAAGCCAAA 59.250 45.000 0.0 0.0 0.00 3.28 R
3923 5010 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.0 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 573 6.653020 TGCTCATACACTCACCTTTATGAAT 58.347 36.000 0.00 0.00 32.02 2.57
190 581 4.216257 ACTCACCTTTATGAATGCACACAC 59.784 41.667 0.00 0.00 0.00 3.82
197 590 1.094650 TGAATGCACACACGCACACT 61.095 50.000 0.00 0.00 46.56 3.55
217 610 1.860240 TCTACCCCTATGAGCACCTCT 59.140 52.381 0.00 0.00 0.00 3.69
226 619 1.832883 TGAGCACCTCTGAGAGACTC 58.167 55.000 11.82 14.26 0.00 3.36
227 620 1.354031 TGAGCACCTCTGAGAGACTCT 59.646 52.381 11.82 4.14 30.77 3.24
228 621 2.017049 GAGCACCTCTGAGAGACTCTC 58.983 57.143 23.28 23.28 43.65 3.20
248 699 2.677836 TCACCTTTATGAATGCGAGCAC 59.322 45.455 0.00 0.00 0.00 4.40
255 706 1.078848 GAATGCGAGCACCAGGACT 60.079 57.895 0.00 0.00 0.00 3.85
261 712 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
279 730 2.854032 CTGGTGGGCCGGGGATAT 60.854 66.667 2.18 0.00 37.50 1.63
282 733 2.430367 GTGGGCCGGGGATATCAC 59.570 66.667 2.18 0.00 0.00 3.06
287 738 1.407656 GGCCGGGGATATCACTGTCA 61.408 60.000 12.85 0.00 0.00 3.58
299 750 6.014242 GGATATCACTGTCATCCTAACCATCA 60.014 42.308 4.83 0.00 36.17 3.07
305 756 4.331968 TGTCATCCTAACCATCAAACCAC 58.668 43.478 0.00 0.00 0.00 4.16
327 778 2.740826 TGGTTCGCCACGCTAAGC 60.741 61.111 0.00 0.00 43.56 3.09
337 788 1.081892 CACGCTAAGCATGTTGAGCT 58.918 50.000 16.12 1.82 45.97 4.09
347 799 4.582869 AGCATGTTGAGCTCTTGACATTA 58.417 39.130 20.72 3.52 38.01 1.90
385 837 3.096092 TGGATTGACCTGGTTTAATGGC 58.904 45.455 12.99 2.88 39.86 4.40
388 840 0.693622 TGACCTGGTTTAATGGCCGA 59.306 50.000 0.00 0.00 0.00 5.54
398 850 5.888724 TGGTTTAATGGCCGAGATTAATTGA 59.111 36.000 7.39 0.00 0.00 2.57
402 854 9.313118 GTTTAATGGCCGAGATTAATTGAATTT 57.687 29.630 7.39 0.00 0.00 1.82
403 855 8.870160 TTAATGGCCGAGATTAATTGAATTTG 57.130 30.769 0.00 0.00 0.00 2.32
406 858 4.202151 GGCCGAGATTAATTGAATTTGCCT 60.202 41.667 0.00 0.00 0.00 4.75
413 865 7.910584 AGATTAATTGAATTTGCCTCTTTGGT 58.089 30.769 0.00 0.00 38.35 3.67
477 929 1.107114 GAGACCGAGCTCCATGAAGA 58.893 55.000 8.47 0.00 0.00 2.87
693 1559 2.230025 TCTCTCTTTTGTGGAGCTCTCG 59.770 50.000 14.64 0.00 0.00 4.04
725 1591 3.363341 TTCGACCTGAAAATTTGCACC 57.637 42.857 0.00 0.00 32.37 5.01
820 1689 8.093927 TGAAGTTTTTAAATTAAGGCCTCCATG 58.906 33.333 5.23 0.00 0.00 3.66
977 1861 2.095110 CCGCAAATGCTCTGATCAAACA 60.095 45.455 3.63 0.00 39.32 2.83
1010 1894 0.616111 ACAGGAATCAGGGAGAGCGT 60.616 55.000 0.00 0.00 0.00 5.07
1291 2175 2.022195 GACTACGCCTACCATCTCACA 58.978 52.381 0.00 0.00 0.00 3.58
1352 2239 2.074576 GTGCTTCCGGTTAGAAAGGTC 58.925 52.381 0.00 0.00 0.00 3.85
1365 2256 0.663153 AAAGGTCTGCTTGTGTTCGC 59.337 50.000 0.00 0.00 0.00 4.70
1406 2298 0.037232 AGTTCGTGGGAGCTTACTGC 60.037 55.000 0.00 0.00 43.29 4.40
1428 2320 2.447429 TGTGGTTAATTTGGGACTGGGA 59.553 45.455 0.00 0.00 0.00 4.37
1463 2355 0.466124 ACTCTAAATGAGGCCGGCTC 59.534 55.000 28.56 21.30 46.72 4.70
1511 2403 5.407387 GCGAGGAATTACAACACTCTTACAA 59.593 40.000 0.00 0.00 0.00 2.41
1512 2404 6.401153 GCGAGGAATTACAACACTCTTACAAG 60.401 42.308 0.00 0.00 0.00 3.16
1513 2405 6.645415 CGAGGAATTACAACACTCTTACAAGT 59.355 38.462 0.00 0.00 0.00 3.16
1514 2406 7.811236 CGAGGAATTACAACACTCTTACAAGTA 59.189 37.037 0.00 0.00 0.00 2.24
1515 2407 8.828688 AGGAATTACAACACTCTTACAAGTAC 57.171 34.615 0.00 0.00 0.00 2.73
1516 2408 8.648693 AGGAATTACAACACTCTTACAAGTACT 58.351 33.333 0.00 0.00 0.00 2.73
1517 2409 8.923683 GGAATTACAACACTCTTACAAGTACTC 58.076 37.037 0.00 0.00 0.00 2.59
1518 2410 9.472361 GAATTACAACACTCTTACAAGTACTCA 57.528 33.333 0.00 0.00 0.00 3.41
1519 2411 8.813643 ATTACAACACTCTTACAAGTACTCAC 57.186 34.615 0.00 0.00 0.00 3.51
1520 2412 6.466885 ACAACACTCTTACAAGTACTCACT 57.533 37.500 0.00 0.00 36.19 3.41
1521 2413 6.505272 ACAACACTCTTACAAGTACTCACTC 58.495 40.000 0.00 0.00 32.29 3.51
1522 2414 5.708877 ACACTCTTACAAGTACTCACTCC 57.291 43.478 0.00 0.00 32.29 3.85
1523 2415 4.215827 ACACTCTTACAAGTACTCACTCCG 59.784 45.833 0.00 0.00 32.29 4.63
1524 2416 4.215827 CACTCTTACAAGTACTCACTCCGT 59.784 45.833 0.00 0.00 32.29 4.69
1525 2417 4.826183 ACTCTTACAAGTACTCACTCCGTT 59.174 41.667 0.00 0.00 32.29 4.44
1526 2418 5.048852 ACTCTTACAAGTACTCACTCCGTTC 60.049 44.000 0.00 0.00 32.29 3.95
1527 2419 4.217118 TCTTACAAGTACTCACTCCGTTCC 59.783 45.833 0.00 0.00 32.29 3.62
1528 2420 2.595238 ACAAGTACTCACTCCGTTCCT 58.405 47.619 0.00 0.00 32.29 3.36
1529 2421 3.759581 ACAAGTACTCACTCCGTTCCTA 58.240 45.455 0.00 0.00 32.29 2.94
1530 2422 4.147321 ACAAGTACTCACTCCGTTCCTAA 58.853 43.478 0.00 0.00 32.29 2.69
1531 2423 4.586001 ACAAGTACTCACTCCGTTCCTAAA 59.414 41.667 0.00 0.00 32.29 1.85
1532 2424 5.245526 ACAAGTACTCACTCCGTTCCTAAAT 59.754 40.000 0.00 0.00 32.29 1.40
1533 2425 5.326200 AGTACTCACTCCGTTCCTAAATG 57.674 43.478 0.00 0.00 0.00 2.32
1534 2426 4.771054 AGTACTCACTCCGTTCCTAAATGT 59.229 41.667 0.00 0.00 0.00 2.71
1535 2427 5.948162 AGTACTCACTCCGTTCCTAAATGTA 59.052 40.000 0.00 0.00 0.00 2.29
1536 2428 5.733620 ACTCACTCCGTTCCTAAATGTAA 57.266 39.130 0.00 0.00 0.00 2.41
1537 2429 5.721232 ACTCACTCCGTTCCTAAATGTAAG 58.279 41.667 0.00 0.00 0.00 2.34
1538 2430 5.245526 ACTCACTCCGTTCCTAAATGTAAGT 59.754 40.000 0.00 0.00 0.00 2.24
1539 2431 5.717119 TCACTCCGTTCCTAAATGTAAGTC 58.283 41.667 0.00 0.00 0.00 3.01
1540 2432 5.479375 TCACTCCGTTCCTAAATGTAAGTCT 59.521 40.000 0.00 0.00 0.00 3.24
1541 2433 6.014840 TCACTCCGTTCCTAAATGTAAGTCTT 60.015 38.462 0.00 0.00 0.00 3.01
1542 2434 6.649557 CACTCCGTTCCTAAATGTAAGTCTTT 59.350 38.462 0.00 0.00 0.00 2.52
1543 2435 7.172703 CACTCCGTTCCTAAATGTAAGTCTTTT 59.827 37.037 0.00 0.00 0.00 2.27
1544 2436 7.718314 ACTCCGTTCCTAAATGTAAGTCTTTTT 59.282 33.333 0.00 0.00 0.00 1.94
1545 2437 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1546 2438 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
1547 2439 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
1572 2464 9.828852 GAGATTCTAATAAGTGACTACATACGG 57.171 37.037 0.00 0.00 0.00 4.02
1573 2465 9.570468 AGATTCTAATAAGTGACTACATACGGA 57.430 33.333 0.00 0.00 0.00 4.69
1574 2466 9.828852 GATTCTAATAAGTGACTACATACGGAG 57.171 37.037 0.00 0.00 0.00 4.63
1575 2467 7.199541 TCTAATAAGTGACTACATACGGAGC 57.800 40.000 0.00 0.00 0.00 4.70
1576 2468 5.847111 AATAAGTGACTACATACGGAGCA 57.153 39.130 0.00 0.00 0.00 4.26
1577 2469 5.847111 ATAAGTGACTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
1578 2470 4.530710 AAGTGACTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
1579 2471 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1580 2472 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1581 2473 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1582 2474 4.630069 GTGACTACATACGGAGCAAAATGT 59.370 41.667 0.00 0.00 36.56 2.71
1583 2475 4.629634 TGACTACATACGGAGCAAAATGTG 59.370 41.667 0.00 0.00 34.54 3.21
1584 2476 4.575885 ACTACATACGGAGCAAAATGTGT 58.424 39.130 0.00 0.00 34.54 3.72
1585 2477 3.829886 ACATACGGAGCAAAATGTGTG 57.170 42.857 0.00 0.00 31.56 3.82
1586 2478 3.407698 ACATACGGAGCAAAATGTGTGA 58.592 40.909 0.00 0.00 31.56 3.58
1587 2479 3.818210 ACATACGGAGCAAAATGTGTGAA 59.182 39.130 0.00 0.00 31.56 3.18
1588 2480 4.458989 ACATACGGAGCAAAATGTGTGAAT 59.541 37.500 0.00 0.00 31.56 2.57
1589 2481 3.559238 ACGGAGCAAAATGTGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
1590 2482 3.149196 ACGGAGCAAAATGTGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
1591 2483 4.323417 ACGGAGCAAAATGTGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
1592 2484 4.943705 ACGGAGCAAAATGTGTGAATCTAT 59.056 37.500 0.00 0.00 0.00 1.98
1593 2485 6.112734 ACGGAGCAAAATGTGTGAATCTATA 58.887 36.000 0.00 0.00 0.00 1.31
1594 2486 6.037172 ACGGAGCAAAATGTGTGAATCTATAC 59.963 38.462 0.00 0.00 0.00 1.47
1595 2487 6.258727 CGGAGCAAAATGTGTGAATCTATACT 59.741 38.462 0.00 0.00 0.00 2.12
1596 2488 7.517417 CGGAGCAAAATGTGTGAATCTATACTC 60.517 40.741 0.00 0.00 0.00 2.59
1597 2489 7.254932 GGAGCAAAATGTGTGAATCTATACTCC 60.255 40.741 0.00 0.00 0.00 3.85
1598 2490 7.112122 AGCAAAATGTGTGAATCTATACTCCA 58.888 34.615 0.00 0.00 0.00 3.86
1599 2491 7.611467 AGCAAAATGTGTGAATCTATACTCCAA 59.389 33.333 0.00 0.00 0.00 3.53
1600 2492 8.243426 GCAAAATGTGTGAATCTATACTCCAAA 58.757 33.333 0.00 0.00 0.00 3.28
1620 2512 8.942338 TCCAAAATATGTCTATATACATCCGC 57.058 34.615 7.00 0.00 40.52 5.54
1621 2513 8.536175 TCCAAAATATGTCTATATACATCCGCA 58.464 33.333 7.00 0.00 40.52 5.69
1622 2514 9.330063 CCAAAATATGTCTATATACATCCGCAT 57.670 33.333 7.00 0.00 40.52 4.73
1624 2516 9.890629 AAAATATGTCTATATACATCCGCATGT 57.109 29.630 7.00 0.00 45.73 3.21
1627 2519 5.891451 TGTCTATATACATCCGCATGTAGC 58.109 41.667 5.28 0.00 46.52 3.58
1628 2520 5.163550 TGTCTATATACATCCGCATGTAGCC 60.164 44.000 5.28 0.00 46.52 3.93
1629 2521 5.067936 GTCTATATACATCCGCATGTAGCCT 59.932 44.000 5.28 0.00 46.52 4.58
1630 2522 2.751166 ATACATCCGCATGTAGCCTC 57.249 50.000 5.28 0.00 46.52 4.70
1631 2523 1.704641 TACATCCGCATGTAGCCTCT 58.295 50.000 0.00 0.00 41.81 3.69
1632 2524 0.833287 ACATCCGCATGTAGCCTCTT 59.167 50.000 0.00 0.00 41.81 2.85
1633 2525 2.039418 ACATCCGCATGTAGCCTCTTA 58.961 47.619 0.00 0.00 41.81 2.10
1634 2526 2.634940 ACATCCGCATGTAGCCTCTTAT 59.365 45.455 0.00 0.00 41.81 1.73
1635 2527 3.071602 ACATCCGCATGTAGCCTCTTATT 59.928 43.478 0.00 0.00 41.81 1.40
1636 2528 3.111853 TCCGCATGTAGCCTCTTATTG 57.888 47.619 0.00 0.00 41.38 1.90
1637 2529 2.146342 CCGCATGTAGCCTCTTATTGG 58.854 52.381 0.00 0.00 41.38 3.16
1638 2530 2.224281 CCGCATGTAGCCTCTTATTGGA 60.224 50.000 0.00 0.00 41.38 3.53
1639 2531 3.466836 CGCATGTAGCCTCTTATTGGAA 58.533 45.455 0.00 0.00 41.38 3.53
1640 2532 4.067896 CGCATGTAGCCTCTTATTGGAAT 58.932 43.478 0.00 0.00 41.38 3.01
1641 2533 4.153117 CGCATGTAGCCTCTTATTGGAATC 59.847 45.833 0.00 0.00 41.38 2.52
1642 2534 5.312079 GCATGTAGCCTCTTATTGGAATCT 58.688 41.667 0.00 0.00 37.23 2.40
1643 2535 5.411053 GCATGTAGCCTCTTATTGGAATCTC 59.589 44.000 0.00 0.00 37.23 2.75
1644 2536 6.743773 GCATGTAGCCTCTTATTGGAATCTCT 60.744 42.308 0.00 0.00 37.23 3.10
1645 2537 7.526192 GCATGTAGCCTCTTATTGGAATCTCTA 60.526 40.741 0.00 0.00 37.23 2.43
1646 2538 7.914427 TGTAGCCTCTTATTGGAATCTCTAA 57.086 36.000 0.00 0.00 0.00 2.10
1647 2539 8.319057 TGTAGCCTCTTATTGGAATCTCTAAA 57.681 34.615 0.00 0.00 0.00 1.85
1648 2540 8.768397 TGTAGCCTCTTATTGGAATCTCTAAAA 58.232 33.333 0.00 0.00 0.00 1.52
1649 2541 9.614792 GTAGCCTCTTATTGGAATCTCTAAAAA 57.385 33.333 0.00 0.00 0.00 1.94
1650 2542 8.744568 AGCCTCTTATTGGAATCTCTAAAAAG 57.255 34.615 0.00 0.00 0.00 2.27
1651 2543 8.552296 AGCCTCTTATTGGAATCTCTAAAAAGA 58.448 33.333 0.00 0.00 0.00 2.52
1652 2544 8.616942 GCCTCTTATTGGAATCTCTAAAAAGAC 58.383 37.037 0.00 0.00 0.00 3.01
1653 2545 9.898152 CCTCTTATTGGAATCTCTAAAAAGACT 57.102 33.333 0.00 0.00 0.00 3.24
1672 2564 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
1700 2592 4.701956 AACCAAATCGGCTAAACTGATG 57.298 40.909 0.00 0.00 44.00 3.07
1707 2599 2.016318 CGGCTAAACTGATGCAATGGA 58.984 47.619 0.00 0.00 0.00 3.41
1755 2647 4.546674 TGATCCACTACAAGCATCCTAGA 58.453 43.478 0.00 0.00 0.00 2.43
1874 2766 1.639298 GCACAGCCGGACAACAGATC 61.639 60.000 5.05 0.00 0.00 2.75
2017 2909 2.100916 ACAGATCGACCACCCTTAATCG 59.899 50.000 0.00 0.00 35.91 3.34
2111 3003 2.125512 ATCGAACGAGGCAGCCAC 60.126 61.111 15.80 6.48 0.00 5.01
2112 3004 3.665675 ATCGAACGAGGCAGCCACC 62.666 63.158 15.80 3.77 0.00 4.61
2113 3005 4.680237 CGAACGAGGCAGCCACCA 62.680 66.667 15.80 0.00 0.00 4.17
2126 3018 0.741221 GCCACCATCACCGAGAAGAC 60.741 60.000 0.00 0.00 0.00 3.01
2194 3086 0.179073 CTGAAGGTCGGGTGCCTATG 60.179 60.000 0.00 0.00 34.81 2.23
2195 3087 1.146263 GAAGGTCGGGTGCCTATGG 59.854 63.158 0.00 0.00 34.81 2.74
2213 3105 3.443045 CTTCCACCATGCCGCCAC 61.443 66.667 0.00 0.00 0.00 5.01
2214 3106 4.277009 TTCCACCATGCCGCCACA 62.277 61.111 0.00 0.00 0.00 4.17
2215 3107 4.720902 TCCACCATGCCGCCACAG 62.721 66.667 0.00 0.00 0.00 3.66
2221 3113 4.349503 ATGCCGCCACAGCCAGAA 62.350 61.111 0.00 0.00 34.57 3.02
2222 3114 3.866379 ATGCCGCCACAGCCAGAAA 62.866 57.895 0.00 0.00 34.57 2.52
2223 3115 3.294493 GCCGCCACAGCCAGAAAA 61.294 61.111 0.00 0.00 34.57 2.29
2224 3116 2.956987 CCGCCACAGCCAGAAAAG 59.043 61.111 0.00 0.00 34.57 2.27
2225 3117 2.629656 CCGCCACAGCCAGAAAAGG 61.630 63.158 0.00 0.00 34.57 3.11
2226 3118 2.629656 CGCCACAGCCAGAAAAGGG 61.630 63.158 0.00 0.00 34.57 3.95
2227 3119 2.278330 GCCACAGCCAGAAAAGGGG 61.278 63.158 0.00 0.00 0.00 4.79
2228 3120 1.460255 CCACAGCCAGAAAAGGGGA 59.540 57.895 0.00 0.00 0.00 4.81
2229 3121 0.178964 CCACAGCCAGAAAAGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
2230 3122 0.961753 CACAGCCAGAAAAGGGGAAC 59.038 55.000 0.00 0.00 0.00 3.62
2244 3136 1.153147 GGAACCCATCCTCTTCCGC 60.153 63.158 0.00 0.00 45.56 5.54
2245 3137 1.153147 GAACCCATCCTCTTCCGCC 60.153 63.158 0.00 0.00 0.00 6.13
2246 3138 1.616628 AACCCATCCTCTTCCGCCT 60.617 57.895 0.00 0.00 0.00 5.52
2247 3139 1.915078 AACCCATCCTCTTCCGCCTG 61.915 60.000 0.00 0.00 0.00 4.85
2248 3140 2.507944 CCATCCTCTTCCGCCTGG 59.492 66.667 0.00 0.00 0.00 4.45
2249 3141 2.066393 CCATCCTCTTCCGCCTGGA 61.066 63.158 0.00 0.00 44.61 3.86
2250 3142 1.414061 CCATCCTCTTCCGCCTGGAT 61.414 60.000 0.00 0.00 45.91 3.41
2251 3143 0.471617 CATCCTCTTCCGCCTGGATT 59.528 55.000 0.00 0.00 45.91 3.01
2252 3144 0.471617 ATCCTCTTCCGCCTGGATTG 59.528 55.000 0.00 0.00 45.91 2.67
2253 3145 0.617535 TCCTCTTCCGCCTGGATTGA 60.618 55.000 0.00 0.00 45.91 2.57
2254 3146 0.179062 CCTCTTCCGCCTGGATTGAG 60.179 60.000 0.00 7.46 45.91 3.02
2255 3147 0.179062 CTCTTCCGCCTGGATTGAGG 60.179 60.000 0.00 0.00 45.91 3.86
2256 3148 1.153086 CTTCCGCCTGGATTGAGGG 60.153 63.158 0.00 0.00 45.91 4.30
2257 3149 3.344137 TTCCGCCTGGATTGAGGGC 62.344 63.158 0.00 0.00 45.91 5.19
2261 3153 4.113815 CCTGGATTGAGGGCGCCA 62.114 66.667 30.85 7.96 0.00 5.69
2262 3154 2.825836 CTGGATTGAGGGCGCCAC 60.826 66.667 30.85 21.69 0.00 5.01
2263 3155 3.626996 CTGGATTGAGGGCGCCACA 62.627 63.158 30.85 24.16 0.00 4.17
2264 3156 3.134127 GGATTGAGGGCGCCACAC 61.134 66.667 30.85 18.63 0.00 3.82
2265 3157 3.134127 GATTGAGGGCGCCACACC 61.134 66.667 30.85 16.71 0.00 4.16
2266 3158 3.918253 GATTGAGGGCGCCACACCA 62.918 63.158 30.85 16.60 0.00 4.17
2267 3159 4.947147 TTGAGGGCGCCACACCAC 62.947 66.667 30.85 9.73 0.00 4.16
2274 3166 2.671619 CGCCACACCACCGGAATT 60.672 61.111 9.46 0.00 0.00 2.17
2275 3167 2.961768 GCCACACCACCGGAATTG 59.038 61.111 9.46 3.62 0.00 2.32
2276 3168 2.635443 GCCACACCACCGGAATTGG 61.635 63.158 9.46 8.57 40.32 3.16
2277 3169 1.976474 CCACACCACCGGAATTGGG 60.976 63.158 9.46 1.73 38.59 4.12
2278 3170 2.282887 ACACCACCGGAATTGGGC 60.283 61.111 9.46 0.00 38.59 5.36
2279 3171 3.439540 CACCACCGGAATTGGGCG 61.440 66.667 9.46 0.00 38.59 6.13
2280 3172 4.733542 ACCACCGGAATTGGGCGG 62.734 66.667 9.46 0.00 38.59 6.13
2283 3175 4.796495 ACCGGAATTGGGCGGCTC 62.796 66.667 9.46 0.00 0.00 4.70
2301 3193 4.329545 GGCTGAGTCGGGCCACAA 62.330 66.667 14.55 0.00 46.84 3.33
2302 3194 3.050275 GCTGAGTCGGGCCACAAC 61.050 66.667 4.39 0.00 0.00 3.32
2303 3195 2.743718 CTGAGTCGGGCCACAACT 59.256 61.111 4.39 4.02 0.00 3.16
2304 3196 1.669115 CTGAGTCGGGCCACAACTG 60.669 63.158 4.39 1.11 0.00 3.16
2305 3197 2.099652 CTGAGTCGGGCCACAACTGA 62.100 60.000 4.39 0.00 0.00 3.41
2306 3198 1.070786 GAGTCGGGCCACAACTGAA 59.929 57.895 4.39 0.00 0.00 3.02
2307 3199 0.951040 GAGTCGGGCCACAACTGAAG 60.951 60.000 4.39 0.00 0.00 3.02
2308 3200 1.966451 GTCGGGCCACAACTGAAGG 60.966 63.158 4.39 0.00 0.00 3.46
2309 3201 2.113139 CGGGCCACAACTGAAGGT 59.887 61.111 4.39 0.00 0.00 3.50
2310 3202 1.966451 CGGGCCACAACTGAAGGTC 60.966 63.158 4.39 0.00 0.00 3.85
2311 3203 1.966451 GGGCCACAACTGAAGGTCG 60.966 63.158 4.39 0.00 0.00 4.79
2312 3204 1.966451 GGCCACAACTGAAGGTCGG 60.966 63.158 0.00 0.00 0.00 4.79
2313 3205 1.966451 GCCACAACTGAAGGTCGGG 60.966 63.158 0.00 0.00 0.00 5.14
2314 3206 1.450211 CCACAACTGAAGGTCGGGT 59.550 57.895 0.00 0.00 0.00 5.28
2315 3207 0.884704 CCACAACTGAAGGTCGGGTG 60.885 60.000 0.48 0.48 45.74 4.61
2316 3208 1.227853 ACAACTGAAGGTCGGGTGC 60.228 57.895 1.96 0.00 44.16 5.01
2317 3209 1.966451 CAACTGAAGGTCGGGTGCC 60.966 63.158 0.00 0.00 33.16 5.01
2318 3210 2.147387 AACTGAAGGTCGGGTGCCT 61.147 57.895 0.00 0.00 38.11 4.75
2319 3211 0.834687 AACTGAAGGTCGGGTGCCTA 60.835 55.000 0.00 0.00 34.81 3.93
2320 3212 0.617820 ACTGAAGGTCGGGTGCCTAT 60.618 55.000 0.00 0.00 34.81 2.57
2373 3265 1.616628 AACCCATCCTCTTCCGCCT 60.617 57.895 0.00 0.00 0.00 5.52
2435 3327 2.438434 CACCGGGGAGCACCATTC 60.438 66.667 6.32 0.00 42.91 2.67
2506 3398 0.818296 CAGAGTACTCAACCCCTCCG 59.182 60.000 24.44 0.00 0.00 4.63
2764 3656 1.444553 CAAGGCCGACAGTCGAGAC 60.445 63.158 24.88 16.02 43.74 3.36
2832 3725 1.918293 ACCCCCAGATCTGACGCAA 60.918 57.895 24.62 0.00 0.00 4.85
3031 3924 7.759886 TGATCGACCTGTCTTTCTATACTTTTG 59.240 37.037 0.00 0.00 0.00 2.44
3343 4430 5.163301 CCTTGTAATAGTGGTCATAGCACCT 60.163 44.000 5.67 0.00 46.99 4.00
3824 4911 9.910267 TTCTGTTTACCCTTAAATTATACTCCC 57.090 33.333 0.00 0.00 29.82 4.30
3825 4912 9.287818 TCTGTTTACCCTTAAATTATACTCCCT 57.712 33.333 0.00 0.00 29.82 4.20
3826 4913 9.557061 CTGTTTACCCTTAAATTATACTCCCTC 57.443 37.037 0.00 0.00 29.82 4.30
3827 4914 8.496916 TGTTTACCCTTAAATTATACTCCCTCC 58.503 37.037 0.00 0.00 29.82 4.30
3828 4915 5.820404 ACCCTTAAATTATACTCCCTCCG 57.180 43.478 0.00 0.00 0.00 4.63
3829 4916 5.222086 ACCCTTAAATTATACTCCCTCCGT 58.778 41.667 0.00 0.00 0.00 4.69
3830 4917 5.306419 ACCCTTAAATTATACTCCCTCCGTC 59.694 44.000 0.00 0.00 0.00 4.79
3831 4918 5.279859 CCCTTAAATTATACTCCCTCCGTCC 60.280 48.000 0.00 0.00 0.00 4.79
3832 4919 5.279859 CCTTAAATTATACTCCCTCCGTCCC 60.280 48.000 0.00 0.00 0.00 4.46
3833 4920 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
3834 4921 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
3835 4922 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3836 4923 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3837 4924 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3838 4925 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3839 4926 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3840 4927 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3841 4928 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3842 4929 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3843 4930 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3844 4931 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3845 4932 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3846 4933 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3847 4934 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3848 4935 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3849 4936 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3850 4937 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3851 4938 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3852 4939 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3853 4940 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3854 4941 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3855 4942 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3856 4943 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3864 4951 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3865 4952 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3867 4954 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3868 4955 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3879 4966 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
3880 4967 9.494271 TCTAAATACGGATGTATCTAGTTACGT 57.506 33.333 5.54 5.54 40.42 3.57
3883 4970 9.807649 AAATACGGATGTATCTAGTTACGTTTT 57.192 29.630 0.00 2.11 40.42 2.43
3886 4973 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
3887 4974 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
3888 4975 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
3889 4976 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
3899 4986 9.578439 AGTTACGTTTTAGTGTTAGATACATCC 57.422 33.333 0.00 0.00 39.39 3.51
3900 4987 8.526681 GTTACGTTTTAGTGTTAGATACATCCG 58.473 37.037 0.00 0.00 39.39 4.18
3901 4988 6.624423 ACGTTTTAGTGTTAGATACATCCGT 58.376 36.000 0.00 0.00 39.39 4.69
3902 4989 7.761409 ACGTTTTAGTGTTAGATACATCCGTA 58.239 34.615 0.00 0.00 39.39 4.02
3903 4990 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
3919 5006 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
3920 5007 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
3921 5008 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
3922 5009 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3923 5010 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3924 5011 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
3932 5019 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3933 5020 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3934 5021 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3935 5022 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3936 5023 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3937 5024 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3938 5025 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3939 5026 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3940 5027 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3941 5028 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3942 5029 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3943 5030 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3944 5031 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3986 5073 5.464030 TTTGTGAAGTACTCCCTCTGTAC 57.536 43.478 0.00 0.00 40.19 2.90
4096 5257 2.591923 TGCAAGGTCAACATGCCTTAA 58.408 42.857 2.44 0.00 42.68 1.85
4307 5472 9.270640 GATACTTATCAGCTCATGTCTTTCAAT 57.729 33.333 0.00 0.00 32.98 2.57
4654 5819 5.187687 CCCTACGAGTACTTCTTTCTCTCT 58.812 45.833 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 552 6.316140 GTGCATTCATAAAGGTGAGTGTATGA 59.684 38.462 0.00 0.00 37.92 2.15
182 573 0.874175 GTAGAGTGTGCGTGTGTGCA 60.874 55.000 0.00 0.00 43.95 4.57
190 581 1.338337 CTCATAGGGGTAGAGTGTGCG 59.662 57.143 0.00 0.00 0.00 5.34
197 590 1.860240 AGAGGTGCTCATAGGGGTAGA 59.140 52.381 0.00 0.00 32.06 2.59
227 620 2.677836 GTGCTCGCATTCATAAAGGTGA 59.322 45.455 0.00 0.00 34.77 4.02
228 621 2.223340 GGTGCTCGCATTCATAAAGGTG 60.223 50.000 0.00 0.00 0.00 4.00
229 622 2.017049 GGTGCTCGCATTCATAAAGGT 58.983 47.619 0.00 0.00 0.00 3.50
230 623 2.016318 TGGTGCTCGCATTCATAAAGG 58.984 47.619 0.00 0.00 0.00 3.11
231 624 2.032550 CCTGGTGCTCGCATTCATAAAG 59.967 50.000 0.00 0.00 0.00 1.85
232 625 2.016318 CCTGGTGCTCGCATTCATAAA 58.984 47.619 0.00 0.00 0.00 1.40
233 626 1.209261 TCCTGGTGCTCGCATTCATAA 59.791 47.619 0.00 0.00 0.00 1.90
237 688 0.674895 AAGTCCTGGTGCTCGCATTC 60.675 55.000 0.00 0.00 0.00 2.67
269 720 0.687354 ATGACAGTGATATCCCCGGC 59.313 55.000 0.00 0.00 0.00 6.13
275 726 6.997655 TGATGGTTAGGATGACAGTGATATC 58.002 40.000 0.00 0.00 0.00 1.63
278 729 5.698741 TTGATGGTTAGGATGACAGTGAT 57.301 39.130 0.00 0.00 0.00 3.06
279 730 5.245531 GTTTGATGGTTAGGATGACAGTGA 58.754 41.667 0.00 0.00 0.00 3.41
282 733 4.396166 GTGGTTTGATGGTTAGGATGACAG 59.604 45.833 0.00 0.00 0.00 3.51
287 738 3.333680 ACCTGTGGTTTGATGGTTAGGAT 59.666 43.478 0.00 0.00 27.29 3.24
326 777 3.844577 AATGTCAAGAGCTCAACATGC 57.155 42.857 22.38 10.90 32.88 4.06
327 778 6.347270 CTCTAATGTCAAGAGCTCAACATG 57.653 41.667 22.38 13.70 34.50 3.21
337 788 3.834813 ACCAGACTGCTCTAATGTCAAGA 59.165 43.478 0.00 0.00 33.56 3.02
347 799 1.490490 TCCAACAAACCAGACTGCTCT 59.510 47.619 0.00 0.00 0.00 4.09
385 837 6.382869 AGAGGCAAATTCAATTAATCTCGG 57.617 37.500 0.00 0.00 0.00 4.63
388 840 7.910584 ACCAAAGAGGCAAATTCAATTAATCT 58.089 30.769 0.00 0.00 43.14 2.40
402 854 7.234577 ACCAATATAAAAAGAACCAAAGAGGCA 59.765 33.333 0.00 0.00 43.14 4.75
403 855 7.611770 ACCAATATAAAAAGAACCAAAGAGGC 58.388 34.615 0.00 0.00 43.14 4.70
436 888 6.787458 TCTCCAAAATGGCCTACTCATATCTA 59.213 38.462 3.32 0.00 37.47 1.98
437 889 5.608437 TCTCCAAAATGGCCTACTCATATCT 59.392 40.000 3.32 0.00 37.47 1.98
438 890 5.703130 GTCTCCAAAATGGCCTACTCATATC 59.297 44.000 3.32 0.00 37.47 1.63
439 891 5.456763 GGTCTCCAAAATGGCCTACTCATAT 60.457 44.000 3.32 0.00 37.47 1.78
440 892 4.141482 GGTCTCCAAAATGGCCTACTCATA 60.141 45.833 3.32 0.00 37.47 2.15
441 893 3.372025 GGTCTCCAAAATGGCCTACTCAT 60.372 47.826 3.32 0.00 37.47 2.90
537 990 5.669164 TCCTTGCATACATGTGTACTGTA 57.331 39.130 9.11 0.00 32.72 2.74
538 991 4.551702 TCCTTGCATACATGTGTACTGT 57.448 40.909 9.11 0.00 32.72 3.55
539 992 4.877823 ACATCCTTGCATACATGTGTACTG 59.122 41.667 9.11 2.03 32.72 2.74
540 993 5.102953 ACATCCTTGCATACATGTGTACT 57.897 39.130 9.11 0.00 32.72 2.73
541 994 6.918892 TTACATCCTTGCATACATGTGTAC 57.081 37.500 9.11 0.00 32.72 2.90
663 1529 6.425210 TCCACAAAAGAGAGAAATCTGAGA 57.575 37.500 0.00 0.00 0.00 3.27
673 1539 2.029470 ACGAGAGCTCCACAAAAGAGAG 60.029 50.000 10.93 0.00 32.86 3.20
693 1559 6.851674 TTTCAGGTCGAAAAACGTTAAAAC 57.148 33.333 0.00 0.00 40.70 2.43
708 1574 3.244181 ACATGGGTGCAAATTTTCAGGTC 60.244 43.478 0.00 0.00 0.00 3.85
773 1642 6.100792 TCAAAATGCAAACCTTTTCGTTTC 57.899 33.333 0.00 0.00 33.69 2.78
776 1645 5.175127 ACTTCAAAATGCAAACCTTTTCGT 58.825 33.333 0.00 0.00 0.00 3.85
777 1646 5.717038 ACTTCAAAATGCAAACCTTTTCG 57.283 34.783 0.00 0.00 0.00 3.46
778 1647 8.741101 AAAAACTTCAAAATGCAAACCTTTTC 57.259 26.923 0.00 0.00 0.00 2.29
820 1689 4.436183 GCGACAAAAGATTTGTCTAGCTCC 60.436 45.833 25.03 6.49 44.79 4.70
977 1861 4.148825 CTGTTCGGCTAGGCGGCT 62.149 66.667 34.63 18.33 35.72 5.52
1010 1894 4.147449 CGACGATCTGCTGCCCCA 62.147 66.667 0.00 0.00 0.00 4.96
1279 2163 3.548745 TGGATGCTTGTGAGATGGTAG 57.451 47.619 0.00 0.00 0.00 3.18
1291 2175 1.145738 ACCTTCTGGTGTTGGATGCTT 59.854 47.619 0.00 0.00 46.51 3.91
1334 2221 2.347731 CAGACCTTTCTAACCGGAAGC 58.652 52.381 9.46 0.00 0.00 3.86
1352 2239 0.238289 ATTTCGGCGAACACAAGCAG 59.762 50.000 23.64 0.00 34.54 4.24
1365 2256 2.936498 ACCGTCTTCATTAGCATTTCGG 59.064 45.455 0.00 0.00 40.94 4.30
1406 2298 2.825532 CCCAGTCCCAAATTAACCACAG 59.174 50.000 0.00 0.00 0.00 3.66
1456 2348 2.732282 GCTTTGTTAATTCAGAGCCGGC 60.732 50.000 21.89 21.89 38.89 6.13
1463 2355 4.858692 CGGTTGATGGCTTTGTTAATTCAG 59.141 41.667 0.00 0.00 0.00 3.02
1489 2381 7.964604 ACTTGTAAGAGTGTTGTAATTCCTC 57.035 36.000 0.00 0.00 0.00 3.71
1511 2403 4.771054 ACATTTAGGAACGGAGTGAGTACT 59.229 41.667 0.00 0.00 45.00 2.73
1512 2404 5.069501 ACATTTAGGAACGGAGTGAGTAC 57.930 43.478 0.00 0.00 45.00 2.73
1513 2405 6.435277 ACTTACATTTAGGAACGGAGTGAGTA 59.565 38.462 0.00 0.00 45.00 2.59
1514 2406 5.245526 ACTTACATTTAGGAACGGAGTGAGT 59.754 40.000 0.00 0.00 45.00 3.41
1515 2407 5.721232 ACTTACATTTAGGAACGGAGTGAG 58.279 41.667 0.00 0.00 45.00 3.51
1516 2408 5.479375 AGACTTACATTTAGGAACGGAGTGA 59.521 40.000 0.00 0.00 45.00 3.41
1517 2409 5.721232 AGACTTACATTTAGGAACGGAGTG 58.279 41.667 0.00 0.00 45.00 3.51
1519 2411 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1520 2412 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
1521 2413 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
1546 2438 9.828852 CCGTATGTAGTCACTTATTAGAATCTC 57.171 37.037 0.00 0.00 0.00 2.75
1547 2439 9.570468 TCCGTATGTAGTCACTTATTAGAATCT 57.430 33.333 0.00 0.00 0.00 2.40
1548 2440 9.828852 CTCCGTATGTAGTCACTTATTAGAATC 57.171 37.037 0.00 0.00 0.00 2.52
1549 2441 8.298140 GCTCCGTATGTAGTCACTTATTAGAAT 58.702 37.037 0.00 0.00 0.00 2.40
1550 2442 7.283807 TGCTCCGTATGTAGTCACTTATTAGAA 59.716 37.037 0.00 0.00 0.00 2.10
1551 2443 6.769341 TGCTCCGTATGTAGTCACTTATTAGA 59.231 38.462 0.00 0.00 0.00 2.10
1552 2444 6.967135 TGCTCCGTATGTAGTCACTTATTAG 58.033 40.000 0.00 0.00 0.00 1.73
1553 2445 6.947644 TGCTCCGTATGTAGTCACTTATTA 57.052 37.500 0.00 0.00 0.00 0.98
1554 2446 5.847111 TGCTCCGTATGTAGTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
1555 2447 5.847111 TTGCTCCGTATGTAGTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
1556 2448 5.648178 TTTGCTCCGTATGTAGTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
1557 2449 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1558 2450 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1559 2451 4.630069 ACATTTTGCTCCGTATGTAGTCAC 59.370 41.667 0.00 0.00 29.93 3.67
1560 2452 4.629634 CACATTTTGCTCCGTATGTAGTCA 59.370 41.667 0.00 0.00 30.53 3.41
1561 2453 4.630069 ACACATTTTGCTCCGTATGTAGTC 59.370 41.667 0.00 0.00 30.53 2.59
1562 2454 4.391830 CACACATTTTGCTCCGTATGTAGT 59.608 41.667 0.00 0.00 30.53 2.73
1563 2455 4.629634 TCACACATTTTGCTCCGTATGTAG 59.370 41.667 0.00 0.00 30.53 2.74
1564 2456 4.570930 TCACACATTTTGCTCCGTATGTA 58.429 39.130 0.00 0.00 30.53 2.29
1565 2457 3.407698 TCACACATTTTGCTCCGTATGT 58.592 40.909 0.00 0.00 0.00 2.29
1566 2458 4.418013 TTCACACATTTTGCTCCGTATG 57.582 40.909 0.00 0.00 0.00 2.39
1567 2459 4.943705 AGATTCACACATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
1568 2460 4.323417 AGATTCACACATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
1569 2461 3.149196 AGATTCACACATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
1570 2462 3.837213 AGATTCACACATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
1571 2463 7.254932 GGAGTATAGATTCACACATTTTGCTCC 60.255 40.741 0.00 0.00 0.00 4.70
1572 2464 7.280876 TGGAGTATAGATTCACACATTTTGCTC 59.719 37.037 0.00 0.00 0.00 4.26
1573 2465 7.112122 TGGAGTATAGATTCACACATTTTGCT 58.888 34.615 0.00 0.00 0.00 3.91
1574 2466 7.320443 TGGAGTATAGATTCACACATTTTGC 57.680 36.000 0.00 0.00 0.00 3.68
1594 2486 9.035607 GCGGATGTATATAGACATATTTTGGAG 57.964 37.037 12.82 1.26 40.18 3.86
1595 2487 8.536175 TGCGGATGTATATAGACATATTTTGGA 58.464 33.333 12.82 1.08 40.18 3.53
1596 2488 8.716646 TGCGGATGTATATAGACATATTTTGG 57.283 34.615 12.82 1.48 40.18 3.28
1598 2490 9.890629 ACATGCGGATGTATATAGACATATTTT 57.109 29.630 21.92 0.00 41.27 1.82
1601 2493 8.300286 GCTACATGCGGATGTATATAGACATAT 58.700 37.037 27.01 0.80 42.87 1.78
1602 2494 7.255486 GGCTACATGCGGATGTATATAGACATA 60.255 40.741 27.01 6.00 42.87 2.29
1603 2495 6.461648 GGCTACATGCGGATGTATATAGACAT 60.462 42.308 27.01 12.70 42.87 3.06
1604 2496 5.163550 GGCTACATGCGGATGTATATAGACA 60.164 44.000 27.01 2.07 42.87 3.41
1605 2497 5.067936 AGGCTACATGCGGATGTATATAGAC 59.932 44.000 27.01 20.27 42.87 2.59
1606 2498 5.201243 AGGCTACATGCGGATGTATATAGA 58.799 41.667 27.01 8.81 42.87 1.98
1607 2499 5.300539 AGAGGCTACATGCGGATGTATATAG 59.699 44.000 27.01 19.13 42.87 1.31
1608 2500 5.201243 AGAGGCTACATGCGGATGTATATA 58.799 41.667 27.01 9.88 42.87 0.86
1609 2501 4.026744 AGAGGCTACATGCGGATGTATAT 58.973 43.478 27.01 16.82 42.87 0.86
1610 2502 3.431415 AGAGGCTACATGCGGATGTATA 58.569 45.455 27.01 10.95 42.87 1.47
1611 2503 2.251818 AGAGGCTACATGCGGATGTAT 58.748 47.619 27.01 14.78 42.87 2.29
1612 2504 1.704641 AGAGGCTACATGCGGATGTA 58.295 50.000 25.54 25.54 41.27 2.29
1613 2505 0.833287 AAGAGGCTACATGCGGATGT 59.167 50.000 26.09 26.09 45.24 3.06
1614 2506 2.820059 TAAGAGGCTACATGCGGATG 57.180 50.000 16.07 16.07 44.05 3.51
1615 2507 3.557898 CCAATAAGAGGCTACATGCGGAT 60.558 47.826 0.00 0.00 44.05 4.18
1616 2508 2.224281 CCAATAAGAGGCTACATGCGGA 60.224 50.000 0.00 0.00 44.05 5.54
1617 2509 2.146342 CCAATAAGAGGCTACATGCGG 58.854 52.381 0.00 0.00 44.05 5.69
1618 2510 3.111853 TCCAATAAGAGGCTACATGCG 57.888 47.619 0.00 0.00 44.05 4.73
1619 2511 5.312079 AGATTCCAATAAGAGGCTACATGC 58.688 41.667 0.00 0.00 41.94 4.06
1620 2512 6.767456 AGAGATTCCAATAAGAGGCTACATG 58.233 40.000 0.00 0.00 0.00 3.21
1621 2513 8.497910 TTAGAGATTCCAATAAGAGGCTACAT 57.502 34.615 0.00 0.00 0.00 2.29
1622 2514 7.914427 TTAGAGATTCCAATAAGAGGCTACA 57.086 36.000 0.00 0.00 0.00 2.74
1623 2515 9.614792 TTTTTAGAGATTCCAATAAGAGGCTAC 57.385 33.333 0.00 0.00 0.00 3.58
1624 2516 9.838339 CTTTTTAGAGATTCCAATAAGAGGCTA 57.162 33.333 0.00 0.00 0.00 3.93
1625 2517 8.552296 TCTTTTTAGAGATTCCAATAAGAGGCT 58.448 33.333 0.00 0.00 0.00 4.58
1626 2518 8.616942 GTCTTTTTAGAGATTCCAATAAGAGGC 58.383 37.037 0.00 0.00 0.00 4.70
1627 2519 9.898152 AGTCTTTTTAGAGATTCCAATAAGAGG 57.102 33.333 0.00 0.00 0.00 3.69
1646 2538 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
1647 2539 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
1648 2540 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
1649 2541 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
1650 2542 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
1651 2543 9.145442 GTACTCCCTCTGTTCCTAAATATAAGT 57.855 37.037 0.00 0.00 0.00 2.24
1652 2544 9.144298 TGTACTCCCTCTGTTCCTAAATATAAG 57.856 37.037 0.00 0.00 0.00 1.73
1653 2545 9.496710 TTGTACTCCCTCTGTTCCTAAATATAA 57.503 33.333 0.00 0.00 0.00 0.98
1654 2546 9.496710 TTTGTACTCCCTCTGTTCCTAAATATA 57.503 33.333 0.00 0.00 0.00 0.86
1655 2547 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
1656 2548 7.310858 GGTTTGTACTCCCTCTGTTCCTAAATA 60.311 40.741 0.00 0.00 0.00 1.40
1657 2549 6.473758 GTTTGTACTCCCTCTGTTCCTAAAT 58.526 40.000 0.00 0.00 0.00 1.40
1658 2550 5.221783 GGTTTGTACTCCCTCTGTTCCTAAA 60.222 44.000 0.00 0.00 0.00 1.85
1659 2551 4.285260 GGTTTGTACTCCCTCTGTTCCTAA 59.715 45.833 0.00 0.00 0.00 2.69
1660 2552 3.836562 GGTTTGTACTCCCTCTGTTCCTA 59.163 47.826 0.00 0.00 0.00 2.94
1661 2553 2.638363 GGTTTGTACTCCCTCTGTTCCT 59.362 50.000 0.00 0.00 0.00 3.36
1662 2554 2.370849 TGGTTTGTACTCCCTCTGTTCC 59.629 50.000 0.00 0.00 0.00 3.62
1663 2555 3.764237 TGGTTTGTACTCCCTCTGTTC 57.236 47.619 0.00 0.00 0.00 3.18
1664 2556 4.513406 TTTGGTTTGTACTCCCTCTGTT 57.487 40.909 0.00 0.00 0.00 3.16
1665 2557 4.652822 GATTTGGTTTGTACTCCCTCTGT 58.347 43.478 0.00 0.00 0.00 3.41
1666 2558 3.684788 CGATTTGGTTTGTACTCCCTCTG 59.315 47.826 0.00 0.00 0.00 3.35
1667 2559 3.307480 CCGATTTGGTTTGTACTCCCTCT 60.307 47.826 0.00 0.00 0.00 3.69
1668 2560 3.007635 CCGATTTGGTTTGTACTCCCTC 58.992 50.000 0.00 0.00 0.00 4.30
1669 2561 2.878526 GCCGATTTGGTTTGTACTCCCT 60.879 50.000 0.00 0.00 41.21 4.20
1670 2562 1.471287 GCCGATTTGGTTTGTACTCCC 59.529 52.381 0.00 0.00 41.21 4.30
1671 2563 2.433436 AGCCGATTTGGTTTGTACTCC 58.567 47.619 0.00 0.00 41.21 3.85
1672 2564 5.180680 AGTTTAGCCGATTTGGTTTGTACTC 59.819 40.000 0.00 0.00 41.21 2.59
1700 2592 2.680577 CTTTCCAGTTTGCTCCATTGC 58.319 47.619 0.00 0.00 0.00 3.56
1707 2599 3.699038 TGTTGTTAGCTTTCCAGTTTGCT 59.301 39.130 0.00 0.00 39.30 3.91
1755 2647 7.021998 AGCTTTGTTCTTTCTATTCCCTACT 57.978 36.000 0.00 0.00 0.00 2.57
1855 2747 1.639298 GATCTGTTGTCCGGCTGTGC 61.639 60.000 0.00 0.00 0.00 4.57
1874 2766 0.240145 TGTGTTCCTCTAGTCGCACG 59.760 55.000 0.00 0.00 0.00 5.34
2039 2931 1.388547 GTTGTTCTTGGACAGTGGCA 58.611 50.000 0.00 0.00 0.00 4.92
2049 2941 2.551459 CAGCTCCTCTTGGTTGTTCTTG 59.449 50.000 0.00 0.00 34.23 3.02
2097 2989 2.045926 ATGGTGGCTGCCTCGTTC 60.046 61.111 21.03 4.45 0.00 3.95
2111 3003 0.530744 TTCGGTCTTCTCGGTGATGG 59.469 55.000 0.00 0.00 0.00 3.51
2112 3004 1.472878 TCTTCGGTCTTCTCGGTGATG 59.527 52.381 0.00 0.00 0.00 3.07
2113 3005 1.835494 TCTTCGGTCTTCTCGGTGAT 58.165 50.000 0.00 0.00 0.00 3.06
2126 3018 0.179127 TCGCTCTTGCTGATCTTCGG 60.179 55.000 0.00 0.00 36.97 4.30
2196 3088 3.443045 GTGGCGGCATGGTGGAAG 61.443 66.667 17.19 0.00 0.00 3.46
2197 3089 4.277009 TGTGGCGGCATGGTGGAA 62.277 61.111 17.19 0.00 0.00 3.53
2198 3090 4.720902 CTGTGGCGGCATGGTGGA 62.721 66.667 17.19 0.00 0.00 4.02
2204 3096 3.866379 TTTCTGGCTGTGGCGGCAT 62.866 57.895 17.19 0.00 38.87 4.40
2205 3097 4.577677 TTTCTGGCTGTGGCGGCA 62.578 61.111 7.97 7.97 37.51 5.69
2206 3098 3.273080 CTTTTCTGGCTGTGGCGGC 62.273 63.158 0.00 0.00 39.81 6.53
2207 3099 2.629656 CCTTTTCTGGCTGTGGCGG 61.630 63.158 0.00 0.00 39.81 6.13
2208 3100 2.629656 CCCTTTTCTGGCTGTGGCG 61.630 63.158 0.00 0.00 39.81 5.69
2209 3101 2.278330 CCCCTTTTCTGGCTGTGGC 61.278 63.158 0.00 0.00 37.82 5.01
2210 3102 0.178964 TTCCCCTTTTCTGGCTGTGG 60.179 55.000 0.00 0.00 0.00 4.17
2211 3103 0.961753 GTTCCCCTTTTCTGGCTGTG 59.038 55.000 0.00 0.00 0.00 3.66
2212 3104 0.178961 GGTTCCCCTTTTCTGGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
2213 3105 0.900182 GGGTTCCCCTTTTCTGGCTG 60.900 60.000 0.00 0.00 41.34 4.85
2214 3106 1.368268 TGGGTTCCCCTTTTCTGGCT 61.368 55.000 5.34 0.00 45.70 4.75
2215 3107 0.252239 ATGGGTTCCCCTTTTCTGGC 60.252 55.000 5.34 0.00 45.70 4.85
2216 3108 1.619704 GGATGGGTTCCCCTTTTCTGG 60.620 57.143 5.34 0.00 45.70 3.86
2217 3109 1.359130 AGGATGGGTTCCCCTTTTCTG 59.641 52.381 5.34 0.00 46.81 3.02
2218 3110 1.641192 GAGGATGGGTTCCCCTTTTCT 59.359 52.381 5.34 0.00 46.81 2.52
2219 3111 1.641192 AGAGGATGGGTTCCCCTTTTC 59.359 52.381 5.34 0.00 46.81 2.29
2220 3112 1.773541 AGAGGATGGGTTCCCCTTTT 58.226 50.000 5.34 0.00 46.81 2.27
2221 3113 1.641192 GAAGAGGATGGGTTCCCCTTT 59.359 52.381 5.34 0.00 42.27 3.11
2222 3114 1.299939 GAAGAGGATGGGTTCCCCTT 58.700 55.000 5.34 1.07 44.71 3.95
2223 3115 0.624795 GGAAGAGGATGGGTTCCCCT 60.625 60.000 5.34 0.00 46.81 4.79
2224 3116 1.923586 GGAAGAGGATGGGTTCCCC 59.076 63.158 5.34 0.00 46.81 4.81
2225 3117 1.527370 CGGAAGAGGATGGGTTCCC 59.473 63.158 0.12 0.12 46.81 3.97
2226 3118 1.153147 GCGGAAGAGGATGGGTTCC 60.153 63.158 0.00 0.00 45.85 3.62
2227 3119 1.153147 GGCGGAAGAGGATGGGTTC 60.153 63.158 0.00 0.00 0.00 3.62
2228 3120 1.616628 AGGCGGAAGAGGATGGGTT 60.617 57.895 0.00 0.00 0.00 4.11
2229 3121 2.041265 AGGCGGAAGAGGATGGGT 59.959 61.111 0.00 0.00 0.00 4.51
2230 3122 2.507944 CAGGCGGAAGAGGATGGG 59.492 66.667 0.00 0.00 0.00 4.00
2231 3123 2.066393 TCCAGGCGGAAGAGGATGG 61.066 63.158 0.00 0.00 38.83 3.51
2232 3124 3.634202 TCCAGGCGGAAGAGGATG 58.366 61.111 0.00 0.00 38.83 3.51
2244 3136 4.113815 TGGCGCCCTCAATCCAGG 62.114 66.667 26.77 0.00 0.00 4.45
2245 3137 2.825836 GTGGCGCCCTCAATCCAG 60.826 66.667 26.77 0.00 0.00 3.86
2246 3138 3.645660 TGTGGCGCCCTCAATCCA 61.646 61.111 26.77 6.04 0.00 3.41
2247 3139 3.134127 GTGTGGCGCCCTCAATCC 61.134 66.667 26.77 7.94 0.00 3.01
2248 3140 3.134127 GGTGTGGCGCCCTCAATC 61.134 66.667 26.77 14.37 0.00 2.67
2249 3141 3.965258 TGGTGTGGCGCCCTCAAT 61.965 61.111 26.77 0.00 32.22 2.57
2250 3142 4.947147 GTGGTGTGGCGCCCTCAA 62.947 66.667 26.77 6.98 32.22 3.02
2257 3149 2.671619 AATTCCGGTGGTGTGGCG 60.672 61.111 0.00 0.00 0.00 5.69
2258 3150 2.635443 CCAATTCCGGTGGTGTGGC 61.635 63.158 0.00 0.00 0.00 5.01
2259 3151 1.976474 CCCAATTCCGGTGGTGTGG 60.976 63.158 8.65 7.04 34.01 4.17
2260 3152 2.635443 GCCCAATTCCGGTGGTGTG 61.635 63.158 8.65 0.00 34.01 3.82
2261 3153 2.282887 GCCCAATTCCGGTGGTGT 60.283 61.111 8.65 0.00 34.01 4.16
2262 3154 3.439540 CGCCCAATTCCGGTGGTG 61.440 66.667 8.65 1.92 34.01 4.17
2263 3155 4.733542 CCGCCCAATTCCGGTGGT 62.734 66.667 8.65 0.00 44.68 4.16
2266 3158 4.796495 GAGCCGCCCAATTCCGGT 62.796 66.667 0.00 0.00 45.98 5.28
2285 3177 3.050275 GTTGTGGCCCGACTCAGC 61.050 66.667 0.00 0.00 0.00 4.26
2286 3178 1.669115 CAGTTGTGGCCCGACTCAG 60.669 63.158 10.32 0.00 35.47 3.35
2287 3179 1.691195 TTCAGTTGTGGCCCGACTCA 61.691 55.000 10.32 0.00 35.47 3.41
2288 3180 0.951040 CTTCAGTTGTGGCCCGACTC 60.951 60.000 10.32 0.00 35.47 3.36
2289 3181 1.071471 CTTCAGTTGTGGCCCGACT 59.929 57.895 0.00 4.10 38.41 4.18
2290 3182 1.966451 CCTTCAGTTGTGGCCCGAC 60.966 63.158 0.00 1.39 0.00 4.79
2291 3183 2.391724 GACCTTCAGTTGTGGCCCGA 62.392 60.000 0.00 0.00 0.00 5.14
2292 3184 1.966451 GACCTTCAGTTGTGGCCCG 60.966 63.158 0.00 0.00 0.00 6.13
2293 3185 1.966451 CGACCTTCAGTTGTGGCCC 60.966 63.158 0.00 0.00 0.00 5.80
2294 3186 1.966451 CCGACCTTCAGTTGTGGCC 60.966 63.158 0.00 0.00 0.00 5.36
2295 3187 1.966451 CCCGACCTTCAGTTGTGGC 60.966 63.158 0.00 0.00 0.00 5.01
2296 3188 0.884704 CACCCGACCTTCAGTTGTGG 60.885 60.000 0.00 0.00 0.00 4.17
2297 3189 1.507141 GCACCCGACCTTCAGTTGTG 61.507 60.000 0.00 0.00 0.00 3.33
2298 3190 1.227853 GCACCCGACCTTCAGTTGT 60.228 57.895 0.00 0.00 0.00 3.32
2299 3191 1.966451 GGCACCCGACCTTCAGTTG 60.966 63.158 0.00 0.00 0.00 3.16
2300 3192 0.834687 TAGGCACCCGACCTTCAGTT 60.835 55.000 0.00 0.00 38.81 3.16
2301 3193 0.617820 ATAGGCACCCGACCTTCAGT 60.618 55.000 0.00 0.00 38.81 3.41
2302 3194 0.179073 CATAGGCACCCGACCTTCAG 60.179 60.000 0.00 0.00 38.81 3.02
2303 3195 1.622607 CCATAGGCACCCGACCTTCA 61.623 60.000 0.00 0.00 38.81 3.02
2304 3196 1.146263 CCATAGGCACCCGACCTTC 59.854 63.158 0.00 0.00 38.81 3.46
2305 3197 3.320359 CCATAGGCACCCGACCTT 58.680 61.111 0.00 0.00 38.81 3.50
2316 3208 0.825010 GGCATGGTGGAAGCCATAGG 60.825 60.000 0.00 0.00 46.71 2.57
2317 3209 1.168407 CGGCATGGTGGAAGCCATAG 61.168 60.000 0.00 0.00 46.71 2.23
2318 3210 1.152984 CGGCATGGTGGAAGCCATA 60.153 57.895 0.00 0.00 46.71 2.74
2373 3265 3.645660 TGTGGCGCCCTCAATCCA 61.646 61.111 26.77 6.04 0.00 3.41
2420 3312 0.897863 TTTTGAATGGTGCTCCCCGG 60.898 55.000 1.59 0.00 0.00 5.73
2431 3323 4.624015 AGGTGTCTGCATGTTTTTGAATG 58.376 39.130 0.00 0.00 0.00 2.67
2435 3327 3.044986 CGAAGGTGTCTGCATGTTTTTG 58.955 45.455 0.00 0.00 0.00 2.44
2506 3398 1.028130 GGAAAATAGGAGCTGCAGGC 58.972 55.000 17.12 7.98 42.19 4.85
2752 3644 1.797933 CTTGCGGTCTCGACTGTCG 60.798 63.158 23.33 23.33 42.10 4.35
2817 3710 1.153289 CCCTTGCGTCAGATCTGGG 60.153 63.158 22.42 15.28 0.00 4.45
2874 3767 1.018148 CTAGAGTCTCGACCGCATGT 58.982 55.000 0.00 0.00 0.00 3.21
2876 3769 1.448922 GGCTAGAGTCTCGACCGCAT 61.449 60.000 0.00 0.00 0.00 4.73
3031 3924 7.043192 GCATGGACAAAACAATTAGCACATATC 60.043 37.037 0.00 0.00 0.00 1.63
3071 3987 3.853831 TTCTAATACACTTCGGACGCA 57.146 42.857 0.00 0.00 0.00 5.24
3273 4360 9.959749 TTGTTCAATCTAAAATAGGTTGTGTTC 57.040 29.630 9.52 2.17 45.06 3.18
3343 4430 0.749649 ACGGTGCATGAAAAGCCAAA 59.250 45.000 0.00 0.00 0.00 3.28
3589 4676 4.437239 CTGCTTACAGCTATAGCACACTT 58.563 43.478 26.07 2.34 42.97 3.16
3820 4907 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3821 4908 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3822 4909 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3823 4910 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3824 4911 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3825 4912 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3826 4913 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3827 4914 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3828 4915 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3829 4916 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3830 4917 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3838 4925 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3839 4926 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3841 4928 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3842 4929 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3853 4940 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
3854 4941 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
3857 4944 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
3860 4947 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
3861 4948 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
3862 4949 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
3863 4950 9.578439 AACACTAAAACGTAACTAGATACATCC 57.422 33.333 10.40 0.00 0.00 3.51
3873 4960 9.578439 GGATGTATCTAACACTAAAACGTAACT 57.422 33.333 0.00 0.00 42.09 2.24
3874 4961 8.526681 CGGATGTATCTAACACTAAAACGTAAC 58.473 37.037 0.00 0.00 42.09 2.50
3875 4962 8.243426 ACGGATGTATCTAACACTAAAACGTAA 58.757 33.333 0.00 0.00 42.09 3.18
3876 4963 7.761409 ACGGATGTATCTAACACTAAAACGTA 58.239 34.615 0.00 0.00 42.09 3.57
3877 4964 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
3878 4965 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
3893 4980 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3894 4981 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
3895 4982 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
3896 4983 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
3897 4984 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3898 4985 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
3906 4993 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3907 4994 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3908 4995 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3909 4996 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3910 4997 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3911 4998 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3912 4999 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3913 5000 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3914 5001 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3915 5002 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3916 5003 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3917 5004 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3918 5005 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3919 5006 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3920 5007 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3921 5008 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3922 5009 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3923 5010 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3924 5011 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3925 5012 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3926 5013 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3927 5014 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3928 5015 4.687262 ATATATACTCCCTCCGTCCCAA 57.313 45.455 0.00 0.00 0.00 4.12
3929 5016 4.687262 AATATATACTCCCTCCGTCCCA 57.313 45.455 0.00 0.00 0.00 4.37
3930 5017 5.127356 CAGAAATATATACTCCCTCCGTCCC 59.873 48.000 0.00 0.00 0.00 4.46
3931 5018 5.715753 ACAGAAATATATACTCCCTCCGTCC 59.284 44.000 0.00 0.00 0.00 4.79
3932 5019 6.837471 ACAGAAATATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
3933 5020 8.896722 ATAACAGAAATATATACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
4147 5311 8.877864 AATGATTTAAGGAGTGTAATGAACCA 57.122 30.769 0.00 0.00 0.00 3.67
4307 5472 0.325296 ATAGAAGTCCCGCCCAGTCA 60.325 55.000 0.00 0.00 0.00 3.41
4654 5819 9.565090 CAAGGGAAAAGATTGATACAGATATGA 57.435 33.333 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.