Multiple sequence alignment - TraesCS5D01G152800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G152800 chr5D 100.000 4394 0 0 1 4394 241834083 241838476 0.000000e+00 8115
1 TraesCS5D01G152800 chr5A 93.968 4377 185 43 69 4394 311541968 311546316 0.000000e+00 6547
2 TraesCS5D01G152800 chr5B 96.327 3703 100 21 715 4393 256592595 256596285 0.000000e+00 6052
3 TraesCS5D01G152800 chr3B 77.273 198 38 5 178 371 763179738 763179544 4.650000e-20 110
4 TraesCS5D01G152800 chr3B 77.273 198 38 5 178 371 763794961 763795155 4.650000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G152800 chr5D 241834083 241838476 4393 False 8115 8115 100.000 1 4394 1 chr5D.!!$F1 4393
1 TraesCS5D01G152800 chr5A 311541968 311546316 4348 False 6547 6547 93.968 69 4394 1 chr5A.!!$F1 4325
2 TraesCS5D01G152800 chr5B 256592595 256596285 3690 False 6052 6052 96.327 715 4393 1 chr5B.!!$F1 3678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 138 0.105593 ACCAGACCAGCGCATCATAG 59.894 55.0 11.47 0.0 0.00 2.23 F
199 201 0.108329 CAACTCGTAGGCACCCGAAT 60.108 55.0 0.00 0.0 32.08 3.34 F
204 206 0.174845 CGTAGGCACCCGAATGAAGA 59.825 55.0 0.00 0.0 0.00 2.87 F
287 289 0.179056 ACACCTCAACACACCCTTCG 60.179 55.0 0.00 0.0 0.00 3.79 F
2293 2324 0.253044 GGCCACAGAGCATAGTTCCA 59.747 55.0 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 1914 0.036671 CAGATGCTGGTCACTCTGCA 60.037 55.000 0.00 0.0 43.68 4.41 R
2037 2068 0.606401 CGCCTTGGACATTGACCACT 60.606 55.000 7.38 0.0 37.13 4.00 R
2293 2324 1.944024 CGATCTTCGACTCTGTAGCCT 59.056 52.381 0.00 0.0 43.74 4.58 R
3241 3272 0.467844 ACTGCTGCAACATCACCCAA 60.468 50.000 3.02 0.0 0.00 4.12 R
4040 4076 0.323302 TATTTCTCCACGCACAGGCA 59.677 50.000 0.00 0.0 41.24 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.873170 TCGACGACAATTGCAATCAC 57.127 45.000 13.38 6.41 0.00 3.06
21 22 2.412870 TCGACGACAATTGCAATCACT 58.587 42.857 13.38 0.00 0.00 3.41
22 23 3.580731 TCGACGACAATTGCAATCACTA 58.419 40.909 13.38 0.00 0.00 2.74
23 24 3.612423 TCGACGACAATTGCAATCACTAG 59.388 43.478 13.38 6.38 0.00 2.57
24 25 3.612423 CGACGACAATTGCAATCACTAGA 59.388 43.478 13.38 0.00 0.00 2.43
25 26 4.259570 CGACGACAATTGCAATCACTAGAG 60.260 45.833 13.38 3.81 0.00 2.43
26 27 3.372206 ACGACAATTGCAATCACTAGAGC 59.628 43.478 13.38 0.00 0.00 4.09
27 28 3.542875 CGACAATTGCAATCACTAGAGCG 60.543 47.826 13.38 4.93 0.00 5.03
28 29 3.599343 ACAATTGCAATCACTAGAGCGA 58.401 40.909 13.38 0.00 0.00 4.93
29 30 4.002982 ACAATTGCAATCACTAGAGCGAA 58.997 39.130 13.38 0.00 0.00 4.70
30 31 4.142816 ACAATTGCAATCACTAGAGCGAAC 60.143 41.667 13.38 0.00 0.00 3.95
31 32 2.010145 TGCAATCACTAGAGCGAACC 57.990 50.000 0.00 0.00 0.00 3.62
32 33 0.924090 GCAATCACTAGAGCGAACCG 59.076 55.000 0.00 0.00 0.00 4.44
33 34 1.469251 GCAATCACTAGAGCGAACCGA 60.469 52.381 0.00 0.00 0.00 4.69
34 35 2.876091 CAATCACTAGAGCGAACCGAA 58.124 47.619 0.00 0.00 0.00 4.30
35 36 2.853731 ATCACTAGAGCGAACCGAAG 57.146 50.000 0.00 0.00 0.00 3.79
49 50 4.719369 GAAGGCGCGTCGTCCACT 62.719 66.667 15.99 0.00 28.67 4.00
50 51 4.719369 AAGGCGCGTCGTCCACTC 62.719 66.667 8.43 0.00 28.67 3.51
54 55 4.477975 CGCGTCGTCCACTCCTCC 62.478 72.222 0.00 0.00 0.00 4.30
55 56 4.131088 GCGTCGTCCACTCCTCCC 62.131 72.222 0.00 0.00 0.00 4.30
56 57 2.361357 CGTCGTCCACTCCTCCCT 60.361 66.667 0.00 0.00 0.00 4.20
57 58 2.408241 CGTCGTCCACTCCTCCCTC 61.408 68.421 0.00 0.00 0.00 4.30
58 59 1.304217 GTCGTCCACTCCTCCCTCA 60.304 63.158 0.00 0.00 0.00 3.86
59 60 1.304217 TCGTCCACTCCTCCCTCAC 60.304 63.158 0.00 0.00 0.00 3.51
60 61 1.304547 CGTCCACTCCTCCCTCACT 60.305 63.158 0.00 0.00 0.00 3.41
61 62 1.599606 CGTCCACTCCTCCCTCACTG 61.600 65.000 0.00 0.00 0.00 3.66
62 63 1.079256 TCCACTCCTCCCTCACTGG 59.921 63.158 0.00 0.00 0.00 4.00
63 64 1.079256 CCACTCCTCCCTCACTGGA 59.921 63.158 0.00 0.00 38.35 3.86
75 76 3.332919 CCTCACTGGAGTCAGACAAATG 58.667 50.000 2.66 0.00 43.49 2.32
78 79 5.511373 CCTCACTGGAGTCAGACAAATGTTA 60.511 44.000 2.66 0.00 43.49 2.41
85 86 6.371548 TGGAGTCAGACAAATGTTATTGTAGC 59.628 38.462 2.66 0.00 43.31 3.58
98 100 5.123186 TGTTATTGTAGCAAACATTCGGAGG 59.877 40.000 0.00 0.00 38.10 4.30
100 102 2.695359 TGTAGCAAACATTCGGAGGTC 58.305 47.619 0.00 0.00 31.43 3.85
104 106 1.790755 CAAACATTCGGAGGTCGTCA 58.209 50.000 0.00 0.00 40.32 4.35
119 121 1.412710 TCGTCATGCTAAGATCCCACC 59.587 52.381 0.00 0.00 0.00 4.61
120 122 1.138859 CGTCATGCTAAGATCCCACCA 59.861 52.381 0.00 0.00 0.00 4.17
132 134 2.821366 CCACCAGACCAGCGCATC 60.821 66.667 11.47 3.87 0.00 3.91
134 136 1.450848 CACCAGACCAGCGCATCAT 60.451 57.895 11.47 0.00 0.00 2.45
136 138 0.105593 ACCAGACCAGCGCATCATAG 59.894 55.000 11.47 0.00 0.00 2.23
137 139 0.105593 CCAGACCAGCGCATCATAGT 59.894 55.000 11.47 0.00 0.00 2.12
141 143 1.787155 GACCAGCGCATCATAGTAACG 59.213 52.381 11.47 0.00 0.00 3.18
144 146 1.787155 CAGCGCATCATAGTAACGACC 59.213 52.381 11.47 0.00 0.00 4.79
145 147 0.776451 GCGCATCATAGTAACGACCG 59.224 55.000 0.30 0.00 0.00 4.79
146 148 1.862815 GCGCATCATAGTAACGACCGT 60.863 52.381 0.30 0.00 0.00 4.83
172 174 5.909610 GTCGACAAAGAGAAGTGAAAATTGG 59.090 40.000 11.55 0.00 0.00 3.16
174 176 5.909610 CGACAAAGAGAAGTGAAAATTGGAC 59.090 40.000 0.00 0.00 0.00 4.02
194 196 1.653151 GAATCCAACTCGTAGGCACC 58.347 55.000 0.00 0.00 0.00 5.01
195 197 0.252197 AATCCAACTCGTAGGCACCC 59.748 55.000 0.00 0.00 0.00 4.61
199 201 0.108329 CAACTCGTAGGCACCCGAAT 60.108 55.000 0.00 0.00 32.08 3.34
204 206 0.174845 CGTAGGCACCCGAATGAAGA 59.825 55.000 0.00 0.00 0.00 2.87
206 208 1.207329 GTAGGCACCCGAATGAAGACT 59.793 52.381 0.00 0.00 0.00 3.24
215 217 4.184629 CCCGAATGAAGACTAGAACCAAG 58.815 47.826 0.00 0.00 0.00 3.61
223 225 2.428890 AGACTAGAACCAAGCAGATCCG 59.571 50.000 0.00 0.00 0.00 4.18
238 240 1.827399 ATCCGCCGGAGACAAACACT 61.827 55.000 13.12 0.00 34.05 3.55
250 252 0.523072 CAAACACTGGCCGAATCCTG 59.477 55.000 0.00 0.00 0.00 3.86
267 269 1.480137 CCTGCGAGATCCTTCAGAGTT 59.520 52.381 7.13 0.00 0.00 3.01
285 287 2.508300 AGTTACACCTCAACACACCCTT 59.492 45.455 0.00 0.00 0.00 3.95
287 289 0.179056 ACACCTCAACACACCCTTCG 60.179 55.000 0.00 0.00 0.00 3.79
300 302 1.338337 ACCCTTCGACGATGCTAGATG 59.662 52.381 0.00 0.00 0.00 2.90
301 303 1.338337 CCCTTCGACGATGCTAGATGT 59.662 52.381 0.00 0.00 0.00 3.06
305 307 1.529865 TCGACGATGCTAGATGTACCG 59.470 52.381 0.00 0.00 0.00 4.02
308 310 0.313987 CGATGCTAGATGTACCGCCA 59.686 55.000 0.00 0.00 0.00 5.69
326 328 4.222847 GGGCGAGGGTTAGGCGAG 62.223 72.222 0.00 0.00 0.00 5.03
339 341 5.163374 GGGTTAGGCGAGGAGAACTTTATTA 60.163 44.000 0.00 0.00 0.00 0.98
343 345 5.602628 AGGCGAGGAGAACTTTATTACATC 58.397 41.667 0.00 0.00 0.00 3.06
346 348 6.201234 GGCGAGGAGAACTTTATTACATCTTC 59.799 42.308 0.00 0.00 0.00 2.87
359 361 3.036429 ATCTTCAGGGAGCCGCCAC 62.036 63.158 0.00 0.00 38.95 5.01
360 362 3.710722 CTTCAGGGAGCCGCCACT 61.711 66.667 0.00 0.00 38.95 4.00
372 377 4.704833 GCCACTGCCTCGCCTTGA 62.705 66.667 0.00 0.00 0.00 3.02
373 378 2.435586 CCACTGCCTCGCCTTGAG 60.436 66.667 0.00 0.00 44.83 3.02
376 381 2.359107 CTGCCTCGCCTTGAGCAA 60.359 61.111 0.00 0.00 43.82 3.91
379 384 0.895100 TGCCTCGCCTTGAGCAAAAT 60.895 50.000 0.00 0.00 43.82 1.82
381 386 1.678101 GCCTCGCCTTGAGCAAAATAT 59.322 47.619 0.00 0.00 43.82 1.28
385 390 5.507985 GCCTCGCCTTGAGCAAAATATAAAT 60.508 40.000 0.00 0.00 43.82 1.40
387 392 6.072112 TCGCCTTGAGCAAAATATAAATCC 57.928 37.500 0.00 0.00 44.04 3.01
398 403 8.482943 AGCAAAATATAAATCCCTAACCAAACC 58.517 33.333 0.00 0.00 0.00 3.27
430 435 4.455070 AGAAAAAGTAGCAGGAACCCTT 57.545 40.909 0.00 0.00 0.00 3.95
435 440 1.025113 GTAGCAGGAACCCTTTCGCC 61.025 60.000 0.00 0.00 31.78 5.54
436 441 1.198759 TAGCAGGAACCCTTTCGCCT 61.199 55.000 0.00 0.00 31.78 5.52
438 443 2.034221 AGGAACCCTTTCGCCTGC 59.966 61.111 0.00 0.00 31.78 4.85
443 448 1.463553 AACCCTTTCGCCTGCAAAGG 61.464 55.000 18.30 18.30 46.71 3.11
463 468 3.702048 GGGGTACACTGCGCCTCA 61.702 66.667 4.18 0.00 36.22 3.86
464 469 2.584608 GGGTACACTGCGCCTCAT 59.415 61.111 4.18 0.00 0.00 2.90
465 470 1.815421 GGGTACACTGCGCCTCATG 60.815 63.158 4.18 0.00 0.00 3.07
466 471 1.815421 GGTACACTGCGCCTCATGG 60.815 63.158 4.18 0.00 0.00 3.66
484 490 1.227380 GCTCTATGGCCACCGACTG 60.227 63.158 8.16 0.00 0.00 3.51
485 491 1.443407 CTCTATGGCCACCGACTGG 59.557 63.158 8.16 0.00 44.08 4.00
495 501 4.979204 CCGACTGGTTTACTCGCA 57.021 55.556 0.00 0.00 0.00 5.10
497 503 1.068474 CCGACTGGTTTACTCGCAAG 58.932 55.000 0.00 0.00 0.00 4.01
512 518 1.002900 CGCAAGAAAAAGTCAAGCGGA 60.003 47.619 0.00 0.00 43.72 5.54
530 536 9.921637 TCAAGCGGAATAAAAATAAATTTGTCT 57.078 25.926 0.00 0.00 0.00 3.41
533 539 9.139174 AGCGGAATAAAAATAAATTTGTCTGTG 57.861 29.630 0.00 0.00 0.00 3.66
535 541 8.379902 CGGAATAAAAATAAATTTGTCTGTGCC 58.620 33.333 0.00 0.00 0.00 5.01
536 542 8.379902 GGAATAAAAATAAATTTGTCTGTGCCG 58.620 33.333 0.00 0.00 0.00 5.69
538 544 9.482627 AATAAAAATAAATTTGTCTGTGCCGAA 57.517 25.926 0.00 0.00 0.00 4.30
542 548 7.581011 AATAAATTTGTCTGTGCCGAATTTC 57.419 32.000 0.00 0.00 37.22 2.17
543 549 4.582701 AATTTGTCTGTGCCGAATTTCA 57.417 36.364 0.00 0.00 0.00 2.69
544 550 4.789012 ATTTGTCTGTGCCGAATTTCAT 57.211 36.364 0.00 0.00 0.00 2.57
546 552 4.944962 TTGTCTGTGCCGAATTTCATAG 57.055 40.909 0.00 0.00 0.00 2.23
547 553 3.270027 TGTCTGTGCCGAATTTCATAGG 58.730 45.455 0.00 0.00 0.00 2.57
548 554 2.614057 GTCTGTGCCGAATTTCATAGGG 59.386 50.000 0.00 0.00 0.00 3.53
549 555 2.238646 TCTGTGCCGAATTTCATAGGGT 59.761 45.455 0.00 0.00 0.00 4.34
552 558 3.192422 TGTGCCGAATTTCATAGGGTTTG 59.808 43.478 0.00 0.00 0.00 2.93
553 559 2.165437 TGCCGAATTTCATAGGGTTTGC 59.835 45.455 0.00 0.00 0.00 3.68
555 561 3.181476 GCCGAATTTCATAGGGTTTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
556 562 4.362279 CCGAATTTCATAGGGTTTGCATG 58.638 43.478 0.00 0.00 0.00 4.06
557 563 4.362279 CGAATTTCATAGGGTTTGCATGG 58.638 43.478 0.00 0.00 0.00 3.66
558 564 4.142182 CGAATTTCATAGGGTTTGCATGGT 60.142 41.667 0.00 0.00 0.00 3.55
562 568 5.559148 TTCATAGGGTTTGCATGGTTTTT 57.441 34.783 0.00 0.00 0.00 1.94
577 583 8.394121 TGCATGGTTTTTATTTTGAACTTTCAC 58.606 29.630 0.00 0.00 36.83 3.18
579 585 9.108284 CATGGTTTTTATTTTGAACTTTCACCT 57.892 29.630 0.00 0.00 36.83 4.00
580 586 9.679661 ATGGTTTTTATTTTGAACTTTCACCTT 57.320 25.926 0.00 0.00 36.83 3.50
587 593 5.398603 TTTGAACTTTCACCTTTTGCAGA 57.601 34.783 0.00 0.00 36.83 4.26
588 594 4.637483 TGAACTTTCACCTTTTGCAGAG 57.363 40.909 0.00 0.00 31.01 3.35
600 606 8.663911 TCACCTTTTGCAGAGTTTTAATTTTTG 58.336 29.630 0.00 0.00 0.00 2.44
601 607 8.663911 CACCTTTTGCAGAGTTTTAATTTTTGA 58.336 29.630 0.00 0.00 0.00 2.69
628 634 0.466124 TTTTTGCGGGGGTTTTGGAG 59.534 50.000 0.00 0.00 0.00 3.86
636 642 1.977854 GGGGGTTTTGGAGCTCATTTT 59.022 47.619 17.19 0.00 0.00 1.82
641 647 3.380142 GTTTTGGAGCTCATTTTCGCAA 58.620 40.909 17.19 5.63 0.00 4.85
690 696 1.076332 AGCGGAACAGTAACAATCGC 58.924 50.000 0.00 0.00 41.64 4.58
693 699 2.095919 GCGGAACAGTAACAATCGCTTT 60.096 45.455 0.00 0.00 38.82 3.51
700 706 6.408858 ACAGTAACAATCGCTTTCTACATG 57.591 37.500 0.00 0.00 0.00 3.21
820 845 0.351998 ATCCCCAATCCCCTCTCCTT 59.648 55.000 0.00 0.00 0.00 3.36
1173 1201 2.622436 CCGTGATCCACTTCCTTTCTC 58.378 52.381 0.00 0.00 31.34 2.87
1218 1249 4.223953 CCCTGTCCTGCTATTTCCTAGTA 58.776 47.826 0.00 0.00 0.00 1.82
1219 1250 4.039366 CCCTGTCCTGCTATTTCCTAGTAC 59.961 50.000 0.00 0.00 0.00 2.73
1220 1251 4.896482 CCTGTCCTGCTATTTCCTAGTACT 59.104 45.833 0.00 0.00 0.00 2.73
1331 1362 7.504238 ACACTGTAATTGGAGAATTTTGTGGTA 59.496 33.333 0.00 0.00 33.67 3.25
1335 1366 8.956426 TGTAATTGGAGAATTTTGTGGTATCTC 58.044 33.333 0.00 0.00 36.62 2.75
1386 1417 3.179443 TCATCATCCGCCTGTAAAGAC 57.821 47.619 0.00 0.00 0.00 3.01
1395 1426 1.405661 GCCTGTAAAGACTTCCTCCGG 60.406 57.143 0.00 0.00 0.00 5.14
1422 1453 0.318699 TGGACAACGAGCTTCTGACG 60.319 55.000 0.00 0.00 0.00 4.35
1659 1690 1.817099 CGCTGGCATCAAGGGACTC 60.817 63.158 0.00 0.00 38.49 3.36
1818 1849 4.478699 TGCTCAAGAATTCAAAGCATTCG 58.521 39.130 19.41 0.00 36.01 3.34
1827 1858 1.167851 CAAAGCATTCGCAAGGGAGA 58.832 50.000 0.00 0.00 42.27 3.71
1883 1914 5.831103 ACCTGATATTGGAATGGTTTCTGT 58.169 37.500 3.15 0.00 32.16 3.41
2022 2053 4.106029 TGTTTATGTGCTCCTCGTAGAC 57.894 45.455 0.00 0.00 0.00 2.59
2037 2068 2.557056 CGTAGACTCACAGTTTGGAGGA 59.443 50.000 0.00 0.00 35.45 3.71
2073 2104 3.003480 AGGCGATCTGAACAAGCTAAAC 58.997 45.455 0.00 0.00 0.00 2.01
2293 2324 0.253044 GGCCACAGAGCATAGTTCCA 59.747 55.000 0.00 0.00 0.00 3.53
3241 3272 7.379750 GTCAAGGAGAGTTATACAACAGAAGT 58.620 38.462 0.00 0.00 37.10 3.01
3708 3741 0.250640 CTCCAAGTTGGTGAGCTGCT 60.251 55.000 21.35 0.00 39.03 4.24
3723 3756 1.817357 CTGCTCTTTGGCTGATGTCA 58.183 50.000 0.00 0.00 33.89 3.58
3761 3795 5.291178 CAGTGCCTCAATCAAATGTTGAAA 58.709 37.500 0.00 0.00 43.95 2.69
3807 3843 5.719563 TGGATCTCAAAGTGTGGTATAGTCA 59.280 40.000 0.00 0.00 0.00 3.41
3816 3852 6.500684 AGTGTGGTATAGTCAGCAAATTTG 57.499 37.500 14.03 14.03 0.00 2.32
3932 3968 2.525105 TATTCTTTTGGTGAGGGGGC 57.475 50.000 0.00 0.00 0.00 5.80
3974 4010 5.215160 CAAGTTCTTGTAAATGCTGGTCAC 58.785 41.667 4.58 0.00 0.00 3.67
3983 4019 3.050275 GCTGGTCACGGTTCAGCC 61.050 66.667 13.62 0.04 45.67 4.85
4040 4076 2.335316 TGTGCGTTAACCCTGACTTT 57.665 45.000 0.00 0.00 0.00 2.66
4044 4081 1.892209 CGTTAACCCTGACTTTGCCT 58.108 50.000 0.00 0.00 0.00 4.75
4100 4137 7.147976 GGTTTGAATTGTCTCTTTGCACTATT 58.852 34.615 0.00 0.00 0.00 1.73
4101 4138 7.327032 GGTTTGAATTGTCTCTTTGCACTATTC 59.673 37.037 0.00 0.00 36.13 1.75
4102 4139 6.169419 TGAATTGTCTCTTTGCACTATTCG 57.831 37.500 0.00 0.00 37.48 3.34
4103 4140 5.700832 TGAATTGTCTCTTTGCACTATTCGT 59.299 36.000 0.00 0.00 37.48 3.85
4104 4141 4.990543 TTGTCTCTTTGCACTATTCGTG 57.009 40.909 0.00 0.00 46.58 4.35
4105 4142 3.325870 TGTCTCTTTGCACTATTCGTGG 58.674 45.455 0.00 0.00 43.97 4.94
4106 4143 3.006430 TGTCTCTTTGCACTATTCGTGGA 59.994 43.478 0.00 0.00 43.97 4.02
4110 4147 5.127194 TCTCTTTGCACTATTCGTGGAGTAT 59.873 40.000 0.00 0.00 45.05 2.12
4195 4249 4.201822 GGTGTGAATGCCGTATTTTCTCTC 60.202 45.833 0.00 0.00 0.00 3.20
4202 4256 2.483889 GCCGTATTTTCTCTCTGGAGGG 60.484 54.545 0.00 0.00 39.86 4.30
4211 4265 4.542906 TCTCTCTGGAGGGACATGAATA 57.457 45.455 0.00 0.00 39.86 1.75
4261 4315 3.421844 AGGCTGTTCCTGGTTTTATCAC 58.578 45.455 0.00 0.00 45.54 3.06
4268 4322 7.309194 GCTGTTCCTGGTTTTATCACTACAAAT 60.309 37.037 0.00 0.00 0.00 2.32
4269 4323 8.472007 TGTTCCTGGTTTTATCACTACAAATT 57.528 30.769 0.00 0.00 0.00 1.82
4270 4324 8.919145 TGTTCCTGGTTTTATCACTACAAATTT 58.081 29.630 0.00 0.00 0.00 1.82
4324 4378 0.938713 CGTTTGCCTGGTTGTAACGA 59.061 50.000 14.81 0.00 42.89 3.85
4370 4424 9.417561 AGTCCAAGTTTATACTAGCTGTACATA 57.582 33.333 0.00 0.00 33.17 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.805671 AGTGATTGCAATTGTCGTCGAA 59.194 40.909 14.33 0.00 0.00 3.71
1 2 2.412870 AGTGATTGCAATTGTCGTCGA 58.587 42.857 14.33 0.00 0.00 4.20
2 3 2.880822 AGTGATTGCAATTGTCGTCG 57.119 45.000 14.33 0.00 0.00 5.12
3 4 4.493220 GCTCTAGTGATTGCAATTGTCGTC 60.493 45.833 14.33 0.49 0.00 4.20
4 5 3.372206 GCTCTAGTGATTGCAATTGTCGT 59.628 43.478 14.33 0.00 0.00 4.34
5 6 3.542875 CGCTCTAGTGATTGCAATTGTCG 60.543 47.826 14.33 5.56 0.00 4.35
6 7 3.618594 TCGCTCTAGTGATTGCAATTGTC 59.381 43.478 14.33 2.12 0.00 3.18
7 8 3.599343 TCGCTCTAGTGATTGCAATTGT 58.401 40.909 14.33 3.96 0.00 2.71
8 9 4.337763 GTTCGCTCTAGTGATTGCAATTG 58.662 43.478 14.33 0.00 34.19 2.32
9 10 3.375299 GGTTCGCTCTAGTGATTGCAATT 59.625 43.478 14.33 0.00 34.19 2.32
10 11 2.939103 GGTTCGCTCTAGTGATTGCAAT 59.061 45.455 12.83 12.83 34.19 3.56
11 12 2.346803 GGTTCGCTCTAGTGATTGCAA 58.653 47.619 0.00 0.00 34.19 4.08
12 13 1.735700 CGGTTCGCTCTAGTGATTGCA 60.736 52.381 0.00 0.00 34.19 4.08
13 14 0.924090 CGGTTCGCTCTAGTGATTGC 59.076 55.000 0.00 0.00 34.19 3.56
14 15 2.561733 TCGGTTCGCTCTAGTGATTG 57.438 50.000 0.00 0.00 34.19 2.67
15 16 2.159226 CCTTCGGTTCGCTCTAGTGATT 60.159 50.000 0.00 0.00 34.19 2.57
16 17 1.405821 CCTTCGGTTCGCTCTAGTGAT 59.594 52.381 0.00 0.00 34.19 3.06
17 18 0.809385 CCTTCGGTTCGCTCTAGTGA 59.191 55.000 0.00 0.00 0.00 3.41
18 19 0.802607 GCCTTCGGTTCGCTCTAGTG 60.803 60.000 0.00 0.00 0.00 2.74
19 20 1.511768 GCCTTCGGTTCGCTCTAGT 59.488 57.895 0.00 0.00 0.00 2.57
20 21 1.586564 CGCCTTCGGTTCGCTCTAG 60.587 63.158 0.00 0.00 0.00 2.43
21 22 2.488355 CGCCTTCGGTTCGCTCTA 59.512 61.111 0.00 0.00 0.00 2.43
32 33 4.719369 AGTGGACGACGCGCCTTC 62.719 66.667 5.73 0.00 33.90 3.46
33 34 4.719369 GAGTGGACGACGCGCCTT 62.719 66.667 5.73 0.00 33.90 4.35
37 38 4.477975 GGAGGAGTGGACGACGCG 62.478 72.222 3.53 3.53 33.90 6.01
38 39 4.131088 GGGAGGAGTGGACGACGC 62.131 72.222 0.00 0.00 0.00 5.19
39 40 2.361357 AGGGAGGAGTGGACGACG 60.361 66.667 0.00 0.00 0.00 5.12
40 41 1.304217 TGAGGGAGGAGTGGACGAC 60.304 63.158 0.00 0.00 0.00 4.34
41 42 1.304217 GTGAGGGAGGAGTGGACGA 60.304 63.158 0.00 0.00 0.00 4.20
42 43 1.304547 AGTGAGGGAGGAGTGGACG 60.305 63.158 0.00 0.00 0.00 4.79
43 44 1.261238 CCAGTGAGGGAGGAGTGGAC 61.261 65.000 0.00 0.00 34.97 4.02
44 45 1.079256 CCAGTGAGGGAGGAGTGGA 59.921 63.158 0.00 0.00 34.97 4.02
45 46 1.079256 TCCAGTGAGGGAGGAGTGG 59.921 63.158 0.00 0.00 38.24 4.00
46 47 4.874521 TCCAGTGAGGGAGGAGTG 57.125 61.111 0.00 0.00 38.24 3.51
52 53 0.482887 TGTCTGACTCCAGTGAGGGA 59.517 55.000 9.51 0.00 43.29 4.20
53 54 1.342074 TTGTCTGACTCCAGTGAGGG 58.658 55.000 9.51 0.00 43.29 4.30
54 55 3.244353 ACATTTGTCTGACTCCAGTGAGG 60.244 47.826 9.51 0.00 43.29 3.86
55 56 4.000331 ACATTTGTCTGACTCCAGTGAG 58.000 45.455 9.51 0.00 44.62 3.51
56 57 4.422073 AACATTTGTCTGACTCCAGTGA 57.578 40.909 9.51 0.00 41.16 3.41
57 58 6.205464 ACAATAACATTTGTCTGACTCCAGTG 59.795 38.462 9.51 3.32 41.16 3.66
58 59 6.299141 ACAATAACATTTGTCTGACTCCAGT 58.701 36.000 9.51 0.51 41.16 4.00
59 60 6.808008 ACAATAACATTTGTCTGACTCCAG 57.192 37.500 9.51 0.00 41.74 3.86
60 61 6.371548 GCTACAATAACATTTGTCTGACTCCA 59.628 38.462 9.51 0.00 40.25 3.86
61 62 6.371548 TGCTACAATAACATTTGTCTGACTCC 59.628 38.462 9.51 0.00 40.25 3.85
62 63 7.364522 TGCTACAATAACATTTGTCTGACTC 57.635 36.000 9.51 0.00 40.25 3.36
63 64 7.744087 TTGCTACAATAACATTTGTCTGACT 57.256 32.000 9.51 0.00 40.25 3.41
64 65 7.860373 TGTTTGCTACAATAACATTTGTCTGAC 59.140 33.333 0.00 0.00 40.25 3.51
65 66 7.935520 TGTTTGCTACAATAACATTTGTCTGA 58.064 30.769 0.00 0.00 40.25 3.27
66 67 8.746922 ATGTTTGCTACAATAACATTTGTCTG 57.253 30.769 0.00 0.00 38.89 3.51
67 68 9.410556 GAATGTTTGCTACAATAACATTTGTCT 57.589 29.630 12.12 0.00 46.66 3.41
75 76 5.123344 ACCTCCGAATGTTTGCTACAATAAC 59.877 40.000 0.00 0.00 40.89 1.89
78 79 3.686016 ACCTCCGAATGTTTGCTACAAT 58.314 40.909 0.00 0.00 40.89 2.71
85 86 1.790755 TGACGACCTCCGAATGTTTG 58.209 50.000 0.00 0.00 41.76 2.93
98 100 2.474816 GTGGGATCTTAGCATGACGAC 58.525 52.381 0.00 0.00 0.00 4.34
100 102 1.138859 TGGTGGGATCTTAGCATGACG 59.861 52.381 0.00 0.00 0.00 4.35
104 106 1.771255 GGTCTGGTGGGATCTTAGCAT 59.229 52.381 0.00 0.00 0.00 3.79
119 121 2.797156 GTTACTATGATGCGCTGGTCTG 59.203 50.000 9.73 0.00 0.00 3.51
120 122 2.543861 CGTTACTATGATGCGCTGGTCT 60.544 50.000 9.73 0.00 0.00 3.85
141 143 0.236711 TCTCTTTGTCGACGACGGTC 59.763 55.000 22.06 0.00 40.21 4.79
144 146 1.709203 CACTTCTCTTTGTCGACGACG 59.291 52.381 22.06 7.04 34.95 5.12
145 147 2.996155 TCACTTCTCTTTGTCGACGAC 58.004 47.619 20.97 20.97 0.00 4.34
146 148 3.703286 TTCACTTCTCTTTGTCGACGA 57.297 42.857 11.62 6.16 0.00 4.20
157 159 5.181245 TGGATTCGTCCAATTTTCACTTCTC 59.819 40.000 0.00 0.00 36.74 2.87
174 176 1.278238 GTGCCTACGAGTTGGATTCG 58.722 55.000 7.86 0.00 43.38 3.34
184 186 0.174845 CTTCATTCGGGTGCCTACGA 59.825 55.000 0.00 0.00 37.33 3.43
190 192 2.930682 GTTCTAGTCTTCATTCGGGTGC 59.069 50.000 0.00 0.00 0.00 5.01
194 196 3.619038 GCTTGGTTCTAGTCTTCATTCGG 59.381 47.826 0.00 0.00 0.00 4.30
195 197 4.245660 TGCTTGGTTCTAGTCTTCATTCG 58.754 43.478 0.00 0.00 0.00 3.34
199 201 4.081420 GGATCTGCTTGGTTCTAGTCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
204 206 1.134670 GCGGATCTGCTTGGTTCTAGT 60.135 52.381 19.63 0.00 0.00 2.57
206 208 0.178068 GGCGGATCTGCTTGGTTCTA 59.822 55.000 25.27 0.00 34.52 2.10
215 217 2.852495 TTTGTCTCCGGCGGATCTGC 62.852 60.000 31.23 18.73 0.00 4.26
223 225 2.617274 GCCAGTGTTTGTCTCCGGC 61.617 63.158 0.00 0.00 0.00 6.13
238 240 2.369257 GATCTCGCAGGATTCGGCCA 62.369 60.000 2.24 0.00 0.00 5.36
250 252 3.440228 GTGTAACTCTGAAGGATCTCGC 58.560 50.000 0.00 0.00 0.00 5.03
267 269 1.069513 CGAAGGGTGTGTTGAGGTGTA 59.930 52.381 0.00 0.00 0.00 2.90
285 287 1.529865 CGGTACATCTAGCATCGTCGA 59.470 52.381 0.00 0.00 0.00 4.20
287 289 1.666311 GGCGGTACATCTAGCATCGTC 60.666 57.143 0.00 0.00 0.00 4.20
305 307 4.176752 CCTAACCCTCGCCCTGGC 62.177 72.222 0.00 0.00 37.85 4.85
308 310 4.772231 TCGCCTAACCCTCGCCCT 62.772 66.667 0.00 0.00 0.00 5.19
313 315 0.460722 GTTCTCCTCGCCTAACCCTC 59.539 60.000 0.00 0.00 0.00 4.30
314 316 0.041386 AGTTCTCCTCGCCTAACCCT 59.959 55.000 0.00 0.00 0.00 4.34
318 320 6.534475 TGTAATAAAGTTCTCCTCGCCTAA 57.466 37.500 0.00 0.00 0.00 2.69
319 321 6.550108 AGATGTAATAAAGTTCTCCTCGCCTA 59.450 38.462 0.00 0.00 0.00 3.93
326 328 7.565680 TCCCTGAAGATGTAATAAAGTTCTCC 58.434 38.462 0.00 0.00 0.00 3.71
339 341 2.586792 GCGGCTCCCTGAAGATGT 59.413 61.111 0.00 0.00 0.00 3.06
343 345 3.710722 AGTGGCGGCTCCCTGAAG 61.711 66.667 11.43 0.00 0.00 3.02
359 361 1.518056 TTTTGCTCAAGGCGAGGCAG 61.518 55.000 0.00 0.00 45.43 4.85
360 362 0.895100 ATTTTGCTCAAGGCGAGGCA 60.895 50.000 0.00 0.00 45.43 4.75
372 377 8.482943 GGTTTGGTTAGGGATTTATATTTTGCT 58.517 33.333 0.00 0.00 0.00 3.91
373 378 8.261522 TGGTTTGGTTAGGGATTTATATTTTGC 58.738 33.333 0.00 0.00 0.00 3.68
402 407 9.623000 GGGTTCCTGCTACTTTTTCTTTATATA 57.377 33.333 0.00 0.00 0.00 0.86
404 409 7.696017 AGGGTTCCTGCTACTTTTTCTTTATA 58.304 34.615 0.00 0.00 29.57 0.98
406 411 5.948842 AGGGTTCCTGCTACTTTTTCTTTA 58.051 37.500 0.00 0.00 29.57 1.85
409 414 4.455070 AAGGGTTCCTGCTACTTTTTCT 57.545 40.909 0.00 0.00 32.13 2.52
411 416 3.568430 CGAAAGGGTTCCTGCTACTTTTT 59.432 43.478 0.00 0.00 32.13 1.94
413 418 2.779506 CGAAAGGGTTCCTGCTACTTT 58.220 47.619 0.00 0.00 32.13 2.66
414 419 1.610886 GCGAAAGGGTTCCTGCTACTT 60.611 52.381 0.00 0.00 32.13 2.24
418 423 2.034221 GGCGAAAGGGTTCCTGCT 59.966 61.111 0.00 0.00 32.13 4.24
420 425 2.335712 GCAGGCGAAAGGGTTCCTG 61.336 63.158 2.94 2.94 46.63 3.86
421 426 2.034221 GCAGGCGAAAGGGTTCCT 59.966 61.111 0.00 0.00 33.87 3.36
422 427 1.460273 TTTGCAGGCGAAAGGGTTCC 61.460 55.000 0.00 0.00 0.00 3.62
423 428 0.039165 CTTTGCAGGCGAAAGGGTTC 60.039 55.000 0.00 0.00 0.00 3.62
424 429 1.463553 CCTTTGCAGGCGAAAGGGTT 61.464 55.000 19.02 0.00 44.00 4.11
425 430 1.903404 CCTTTGCAGGCGAAAGGGT 60.903 57.895 19.02 0.00 44.00 4.34
435 440 2.750237 GTACCCCGGCCTTTGCAG 60.750 66.667 0.00 0.00 40.13 4.41
436 441 3.571216 TGTACCCCGGCCTTTGCA 61.571 61.111 0.00 0.00 40.13 4.08
438 443 1.674322 CAGTGTACCCCGGCCTTTG 60.674 63.158 0.00 0.00 0.00 2.77
449 454 3.799753 CCATGAGGCGCAGTGTAC 58.200 61.111 10.83 0.00 0.00 2.90
466 471 1.227380 CAGTCGGTGGCCATAGAGC 60.227 63.158 9.72 6.78 0.00 4.09
482 488 5.169836 ACTTTTTCTTGCGAGTAAACCAG 57.830 39.130 5.32 4.66 0.00 4.00
484 490 5.164606 TGACTTTTTCTTGCGAGTAAACC 57.835 39.130 5.32 0.39 0.00 3.27
485 491 5.171516 GCTTGACTTTTTCTTGCGAGTAAAC 59.828 40.000 5.32 0.00 0.00 2.01
486 492 5.270853 GCTTGACTTTTTCTTGCGAGTAAA 58.729 37.500 0.00 0.84 0.00 2.01
489 495 2.286418 CGCTTGACTTTTTCTTGCGAGT 60.286 45.455 0.00 0.00 44.01 4.18
490 496 2.301787 CGCTTGACTTTTTCTTGCGAG 58.698 47.619 0.00 0.00 44.01 5.03
491 497 1.002900 CCGCTTGACTTTTTCTTGCGA 60.003 47.619 0.00 0.00 44.01 5.10
493 499 2.774439 TCCGCTTGACTTTTTCTTGC 57.226 45.000 0.00 0.00 0.00 4.01
494 500 7.692908 TTTTATTCCGCTTGACTTTTTCTTG 57.307 32.000 0.00 0.00 0.00 3.02
495 501 8.887036 ATTTTTATTCCGCTTGACTTTTTCTT 57.113 26.923 0.00 0.00 0.00 2.52
512 518 9.482627 TTCGGCACAGACAAATTTATTTTTATT 57.517 25.926 0.00 0.00 0.00 1.40
530 536 2.799126 ACCCTATGAAATTCGGCACA 57.201 45.000 0.00 0.00 0.00 4.57
533 539 2.165437 TGCAAACCCTATGAAATTCGGC 59.835 45.455 0.00 0.00 0.00 5.54
535 541 4.142182 ACCATGCAAACCCTATGAAATTCG 60.142 41.667 0.00 0.00 0.00 3.34
536 542 5.343307 ACCATGCAAACCCTATGAAATTC 57.657 39.130 0.00 0.00 0.00 2.17
538 544 5.760484 AAACCATGCAAACCCTATGAAAT 57.240 34.783 0.00 0.00 0.00 2.17
542 548 7.920160 AAATAAAAACCATGCAAACCCTATG 57.080 32.000 0.00 0.00 0.00 2.23
543 549 8.160106 TCAAAATAAAAACCATGCAAACCCTAT 58.840 29.630 0.00 0.00 0.00 2.57
544 550 7.509546 TCAAAATAAAAACCATGCAAACCCTA 58.490 30.769 0.00 0.00 0.00 3.53
546 552 6.625873 TCAAAATAAAAACCATGCAAACCC 57.374 33.333 0.00 0.00 0.00 4.11
547 553 7.702386 AGTTCAAAATAAAAACCATGCAAACC 58.298 30.769 0.00 0.00 0.00 3.27
548 554 9.566530 AAAGTTCAAAATAAAAACCATGCAAAC 57.433 25.926 0.00 0.00 0.00 2.93
549 555 9.780413 GAAAGTTCAAAATAAAAACCATGCAAA 57.220 25.926 0.00 0.00 0.00 3.68
552 558 7.855409 GGTGAAAGTTCAAAATAAAAACCATGC 59.145 33.333 0.00 0.00 39.21 4.06
553 559 9.108284 AGGTGAAAGTTCAAAATAAAAACCATG 57.892 29.630 0.00 0.00 39.21 3.66
555 561 9.508642 AAAGGTGAAAGTTCAAAATAAAAACCA 57.491 25.926 0.00 0.00 39.21 3.67
558 564 9.833182 GCAAAAGGTGAAAGTTCAAAATAAAAA 57.167 25.926 0.00 0.00 39.21 1.94
562 568 7.551585 TCTGCAAAAGGTGAAAGTTCAAAATA 58.448 30.769 0.00 0.00 39.21 1.40
609 615 0.466124 CTCCAAAACCCCCGCAAAAA 59.534 50.000 0.00 0.00 0.00 1.94
616 622 1.644509 AAATGAGCTCCAAAACCCCC 58.355 50.000 12.15 0.00 0.00 5.40
623 629 1.541147 CCTTGCGAAAATGAGCTCCAA 59.459 47.619 12.15 5.24 0.00 3.53
628 634 3.123050 ACAAAACCTTGCGAAAATGAGC 58.877 40.909 0.00 0.00 35.84 4.26
636 642 3.181475 TGCCAATTTACAAAACCTTGCGA 60.181 39.130 0.00 0.00 35.84 5.10
641 647 2.866065 GCGCTGCCAATTTACAAAACCT 60.866 45.455 0.00 0.00 0.00 3.50
670 676 1.201921 GCGATTGTTACTGTTCCGCTG 60.202 52.381 0.00 0.00 38.36 5.18
677 683 5.351465 CCATGTAGAAAGCGATTGTTACTGT 59.649 40.000 8.44 0.00 0.00 3.55
690 696 2.780010 ACTCCCATCCCCATGTAGAAAG 59.220 50.000 0.00 0.00 0.00 2.62
693 699 1.009552 ACACTCCCATCCCCATGTAGA 59.990 52.381 0.00 0.00 0.00 2.59
700 706 1.682344 GGCAAACACTCCCATCCCC 60.682 63.158 0.00 0.00 0.00 4.81
1083 1111 2.962253 CGAGATCTTTCGGCGGCC 60.962 66.667 9.54 9.54 36.95 6.13
1173 1201 4.619973 CAAATAGGAGCACTCTAGAGCAG 58.380 47.826 19.97 13.44 34.00 4.24
1185 1216 0.548510 AGGACAGGGCAAATAGGAGC 59.451 55.000 0.00 0.00 0.00 4.70
1331 1362 4.521062 GCGACTGGCCTGCGAGAT 62.521 66.667 23.29 0.52 34.80 2.75
1360 1391 1.233019 CAGGCGGATGATGATGAACC 58.767 55.000 0.00 0.00 0.00 3.62
1419 1450 0.466124 AATCCTCTAGGCTTGCCGTC 59.534 55.000 5.95 0.00 34.44 4.79
1422 1453 0.548510 ACCAATCCTCTAGGCTTGCC 59.451 55.000 2.97 2.97 39.34 4.52
1659 1690 0.322906 GACCCCAGAAAGCTTCCCAG 60.323 60.000 0.00 0.00 0.00 4.45
1818 1849 4.015084 CAATATGATCCCATCTCCCTTGC 58.985 47.826 0.00 0.00 34.31 4.01
1827 1858 4.099881 GCCAACACAACAATATGATCCCAT 59.900 41.667 0.00 0.00 36.81 4.00
1883 1914 0.036671 CAGATGCTGGTCACTCTGCA 60.037 55.000 0.00 0.00 43.68 4.41
2022 2053 1.417890 ACCACTCCTCCAAACTGTGAG 59.582 52.381 0.00 0.00 0.00 3.51
2037 2068 0.606401 CGCCTTGGACATTGACCACT 60.606 55.000 7.38 0.00 37.13 4.00
2293 2324 1.944024 CGATCTTCGACTCTGTAGCCT 59.056 52.381 0.00 0.00 43.74 4.58
3241 3272 0.467844 ACTGCTGCAACATCACCCAA 60.468 50.000 3.02 0.00 0.00 4.12
3708 3741 1.278985 ACCGATGACATCAGCCAAAGA 59.721 47.619 15.58 0.00 0.00 2.52
3737 3770 3.256383 TCAACATTTGATTGAGGCACTGG 59.744 43.478 0.00 0.00 34.10 4.00
3761 3795 5.885912 CCACATTTGCCTACCACTTATAAGT 59.114 40.000 12.50 12.50 40.60 2.24
3932 3968 3.349006 GTGCACCTGACCACTGCG 61.349 66.667 5.22 0.00 33.35 5.18
3983 4019 1.879380 TGCAGGACAGGAATTTGAACG 59.121 47.619 0.00 0.00 0.00 3.95
4040 4076 0.323302 TATTTCTCCACGCACAGGCA 59.677 50.000 0.00 0.00 41.24 4.75
4044 4081 4.154015 CACAAGAATATTTCTCCACGCACA 59.846 41.667 0.00 0.00 39.61 4.57
4100 4137 3.070446 AGACACCAAAACATACTCCACGA 59.930 43.478 0.00 0.00 0.00 4.35
4101 4138 3.186409 CAGACACCAAAACATACTCCACG 59.814 47.826 0.00 0.00 0.00 4.94
4102 4139 4.134563 ACAGACACCAAAACATACTCCAC 58.865 43.478 0.00 0.00 0.00 4.02
4103 4140 4.431416 ACAGACACCAAAACATACTCCA 57.569 40.909 0.00 0.00 0.00 3.86
4104 4141 5.767816 AAACAGACACCAAAACATACTCC 57.232 39.130 0.00 0.00 0.00 3.85
4105 4142 7.027778 AGAAAACAGACACCAAAACATACTC 57.972 36.000 0.00 0.00 0.00 2.59
4106 4143 7.404671 AAGAAAACAGACACCAAAACATACT 57.595 32.000 0.00 0.00 0.00 2.12
4110 4147 7.662897 AGTAAAAGAAAACAGACACCAAAACA 58.337 30.769 0.00 0.00 0.00 2.83
4195 4249 5.066893 CACAACAATATTCATGTCCCTCCAG 59.933 44.000 0.00 0.00 0.00 3.86
4272 4326 8.149647 AGATCATTGGTGCTCAAATTTACAAAA 58.850 29.630 0.00 0.00 39.05 2.44
4284 4338 3.063180 CGTTTCAGAGATCATTGGTGCTC 59.937 47.826 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.