Multiple sequence alignment - TraesCS5D01G152400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G152400 chr5D 100.000 3293 0 0 1 3293 241275080 241278372 0.000000e+00 6082.0
1 TraesCS5D01G152400 chr5B 95.713 2706 78 21 307 2986 262353431 262350738 0.000000e+00 4320.0
2 TraesCS5D01G152400 chr5B 94.805 154 5 1 1 151 262353582 262353429 1.530000e-58 237.0
3 TraesCS5D01G152400 chr5B 97.500 40 1 0 3223 3262 262350739 262350700 5.900000e-08 69.4
4 TraesCS5D01G152400 chr5A 93.232 2689 121 29 307 2986 311000343 311002979 0.000000e+00 3901.0
5 TraesCS5D01G152400 chr5A 92.486 173 7 4 141 309 82305770 82305600 3.280000e-60 243.0
6 TraesCS5D01G152400 chr5A 94.737 152 7 1 1 151 311000194 311000345 5.490000e-58 235.0
7 TraesCS5D01G152400 chr5A 91.489 47 4 0 3216 3262 311002971 311003017 7.630000e-07 65.8
8 TraesCS5D01G152400 chr1A 84.270 1513 162 56 401 1862 12917973 12919460 0.000000e+00 1406.0
9 TraesCS5D01G152400 chr1A 89.787 235 24 0 2055 2289 12919633 12919867 5.340000e-78 302.0
10 TraesCS5D01G152400 chr1A 86.585 82 9 2 389 469 12917215 12917295 4.530000e-14 89.8
11 TraesCS5D01G152400 chr1B 83.721 1548 149 69 389 1859 16215808 16217329 0.000000e+00 1367.0
12 TraesCS5D01G152400 chr1B 89.630 675 64 6 1034 1704 23978954 23978282 0.000000e+00 854.0
13 TraesCS5D01G152400 chr1B 91.818 220 18 0 2070 2289 16217412 16217631 1.150000e-79 307.0
14 TraesCS5D01G152400 chr1B 90.950 221 20 0 2069 2289 23970835 23970615 6.910000e-77 298.0
15 TraesCS5D01G152400 chr1B 77.131 481 55 31 389 843 23979579 23979128 9.190000e-56 228.0
16 TraesCS5D01G152400 chr1B 91.358 162 12 2 1696 1856 23971133 23970973 1.540000e-53 220.0
17 TraesCS5D01G152400 chr1D 83.022 1608 151 75 322 1856 10739646 10741204 0.000000e+00 1345.0
18 TraesCS5D01G152400 chr1D 85.070 355 28 8 2055 2388 10741389 10741739 4.070000e-89 339.0
19 TraesCS5D01G152400 chr1D 94.479 163 7 1 149 311 140049280 140049440 1.960000e-62 250.0
20 TraesCS5D01G152400 chr1D 79.630 216 38 6 384 596 10739069 10739281 2.050000e-32 150.0
21 TraesCS5D01G152400 chr4D 97.951 244 4 1 2985 3227 30506666 30506423 3.930000e-114 422.0
22 TraesCS5D01G152400 chr4D 97.119 243 6 1 2984 3225 11504356 11504114 3.060000e-110 409.0
23 TraesCS5D01G152400 chr4D 95.367 259 9 2 2976 3231 76612194 76611936 3.060000e-110 409.0
24 TraesCS5D01G152400 chr4D 96.721 244 7 1 2984 3226 484764651 484764408 3.960000e-109 405.0
25 TraesCS5D01G152400 chr4D 91.111 180 9 5 134 309 49869393 49869569 1.530000e-58 237.0
26 TraesCS5D01G152400 chr3D 97.934 242 4 1 2985 3225 511728395 511728154 5.080000e-113 418.0
27 TraesCS5D01G152400 chr3D 95.769 260 8 3 2967 3224 523192611 523192353 1.830000e-112 416.0
28 TraesCS5D01G152400 chr3D 95.062 162 6 1 149 308 410670224 410670063 1.520000e-63 254.0
29 TraesCS5D01G152400 chr3D 91.257 183 12 3 130 308 238999596 238999414 2.540000e-61 246.0
30 TraesCS5D01G152400 chr3D 74.483 435 93 13 1415 1843 454981043 454980621 4.370000e-39 172.0
31 TraesCS5D01G152400 chr6D 97.541 244 5 1 2984 3226 227008003 227007760 1.830000e-112 416.0
32 TraesCS5D01G152400 chr6D 97.166 247 4 3 2988 3232 80054315 80054070 6.570000e-112 414.0
33 TraesCS5D01G152400 chr2D 97.521 242 6 0 2985 3226 642827313 642827072 6.570000e-112 414.0
34 TraesCS5D01G152400 chr2D 89.474 190 13 5 145 330 425155685 425155499 1.980000e-57 233.0
35 TraesCS5D01G152400 chr7D 95.906 171 5 1 149 317 339786930 339786760 3.240000e-70 276.0
36 TraesCS5D01G152400 chr3B 94.675 169 7 1 146 312 540175093 540174925 9.060000e-66 261.0
37 TraesCS5D01G152400 chr3B 74.943 435 91 13 1415 1843 597840778 597840356 2.020000e-42 183.0
38 TraesCS5D01G152400 chr7B 93.827 162 8 1 149 308 647128858 647129019 3.280000e-60 243.0
39 TraesCS5D01G152400 chr7B 91.667 60 4 1 1866 1924 610089124 610089065 7.570000e-12 82.4
40 TraesCS5D01G152400 chr3A 79.323 266 48 6 1412 1672 32100771 32100508 2.610000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G152400 chr5D 241275080 241278372 3292 False 6082.000000 6082 100.000000 1 3293 1 chr5D.!!$F1 3292
1 TraesCS5D01G152400 chr5B 262350700 262353582 2882 True 1542.133333 4320 96.006000 1 3262 3 chr5B.!!$R1 3261
2 TraesCS5D01G152400 chr5A 311000194 311003017 2823 False 1400.600000 3901 93.152667 1 3262 3 chr5A.!!$F1 3261
3 TraesCS5D01G152400 chr1A 12917215 12919867 2652 False 599.266667 1406 86.880667 389 2289 3 chr1A.!!$F1 1900
4 TraesCS5D01G152400 chr1B 16215808 16217631 1823 False 837.000000 1367 87.769500 389 2289 2 chr1B.!!$F1 1900
5 TraesCS5D01G152400 chr1B 23978282 23979579 1297 True 541.000000 854 83.380500 389 1704 2 chr1B.!!$R2 1315
6 TraesCS5D01G152400 chr1B 23970615 23971133 518 True 259.000000 298 91.154000 1696 2289 2 chr1B.!!$R1 593
7 TraesCS5D01G152400 chr1D 10739069 10741739 2670 False 611.333333 1345 82.574000 322 2388 3 chr1D.!!$F2 2066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 2078 0.038744 CCTCCATCCTGCAACCAACT 59.961 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2756 3977 0.257328 TGGGGTTTCAGTTCAGTGCA 59.743 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 68 6.049149 GCAAACTAATACCAGCAGATCAGTA 58.951 40.000 0.00 0.00 0.00 2.74
77 81 5.065914 GCAGATCAGTATATGCCTTTTCCA 58.934 41.667 0.00 0.00 43.15 3.53
163 168 4.652679 AAAAATTACTCCCTCCGTTCCT 57.347 40.909 0.00 0.00 0.00 3.36
165 170 5.767277 AAAATTACTCCCTCCGTTCCTAA 57.233 39.130 0.00 0.00 0.00 2.69
166 171 5.767277 AAATTACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
167 172 5.970501 AATTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
168 173 7.441903 AAATTACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
170 175 8.731591 AATTACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
171 176 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
172 177 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
173 178 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
177 182 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
178 183 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
195 200 7.118496 AGTCTTTGTAGAGATTCCACTATGG 57.882 40.000 0.00 0.00 39.43 2.74
196 201 6.897966 AGTCTTTGTAGAGATTCCACTATGGA 59.102 38.462 0.00 0.00 46.61 3.41
207 212 4.442401 TCCACTATGGACTACATACGGA 57.558 45.455 0.00 0.00 42.67 4.69
208 213 4.395625 TCCACTATGGACTACATACGGAG 58.604 47.826 0.00 0.00 42.67 4.63
209 214 3.057456 CCACTATGGACTACATACGGAGC 60.057 52.174 0.00 0.00 40.96 4.70
211 216 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
213 218 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
214 219 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
215 220 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
217 222 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
218 223 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
219 224 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
221 226 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
222 227 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
226 231 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
227 232 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
228 233 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
229 234 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
230 235 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
234 239 8.239314 GCAAAATGAATGAATCTACACTCTGAA 58.761 33.333 0.00 0.00 0.00 3.02
238 243 7.312657 TGAATGAATCTACACTCTGAAATGC 57.687 36.000 0.00 0.00 0.00 3.56
239 244 6.880529 TGAATGAATCTACACTCTGAAATGCA 59.119 34.615 0.00 0.00 0.00 3.96
240 245 7.555195 TGAATGAATCTACACTCTGAAATGCAT 59.445 33.333 0.00 0.00 0.00 3.96
243 248 6.537660 TGAATCTACACTCTGAAATGCATCTG 59.462 38.462 0.00 0.00 0.00 2.90
245 250 6.530019 TCTACACTCTGAAATGCATCTGTA 57.470 37.500 0.00 0.00 0.00 2.74
247 252 8.237811 TCTACACTCTGAAATGCATCTGTATA 57.762 34.615 0.00 0.00 0.00 1.47
248 253 8.138074 TCTACACTCTGAAATGCATCTGTATAC 58.862 37.037 0.00 0.00 0.00 1.47
250 255 7.278135 ACACTCTGAAATGCATCTGTATACAT 58.722 34.615 5.91 0.00 0.00 2.29
251 256 7.440556 ACACTCTGAAATGCATCTGTATACATC 59.559 37.037 5.91 0.00 0.00 3.06
252 257 6.933521 ACTCTGAAATGCATCTGTATACATCC 59.066 38.462 5.91 0.00 0.00 3.51
255 260 6.754193 TGAAATGCATCTGTATACATCCGTA 58.246 36.000 5.91 0.00 0.00 4.02
256 261 7.386059 TGAAATGCATCTGTATACATCCGTAT 58.614 34.615 5.91 0.18 41.34 3.06
257 262 7.331687 TGAAATGCATCTGTATACATCCGTATG 59.668 37.037 5.91 6.91 38.79 2.39
260 265 4.864806 GCATCTGTATACATCCGTATGTGG 59.135 45.833 5.91 0.00 45.99 4.17
261 266 5.566826 GCATCTGTATACATCCGTATGTGGT 60.567 44.000 5.91 0.00 45.99 4.16
263 268 6.080648 TCTGTATACATCCGTATGTGGTTC 57.919 41.667 5.91 0.00 45.99 3.62
266 271 6.277605 TGTATACATCCGTATGTGGTTCAAG 58.722 40.000 3.56 0.00 45.99 3.02
267 272 2.985896 ACATCCGTATGTGGTTCAAGG 58.014 47.619 0.00 0.00 44.79 3.61
268 273 2.304761 ACATCCGTATGTGGTTCAAGGT 59.695 45.455 0.00 0.00 44.79 3.50
269 274 2.465860 TCCGTATGTGGTTCAAGGTG 57.534 50.000 0.00 0.00 0.00 4.00
270 275 1.002659 TCCGTATGTGGTTCAAGGTGG 59.997 52.381 0.00 0.00 0.00 4.61
271 276 1.002659 CCGTATGTGGTTCAAGGTGGA 59.997 52.381 0.00 0.00 0.00 4.02
272 277 2.551287 CCGTATGTGGTTCAAGGTGGAA 60.551 50.000 0.00 0.00 0.00 3.53
274 279 3.374058 CGTATGTGGTTCAAGGTGGAATC 59.626 47.826 0.00 0.00 0.00 2.52
275 280 3.814504 ATGTGGTTCAAGGTGGAATCT 57.185 42.857 0.00 0.00 0.00 2.40
276 281 3.140325 TGTGGTTCAAGGTGGAATCTC 57.860 47.619 0.00 0.00 0.00 2.75
277 282 2.711009 TGTGGTTCAAGGTGGAATCTCT 59.289 45.455 0.00 0.00 0.00 3.10
278 283 3.907474 TGTGGTTCAAGGTGGAATCTCTA 59.093 43.478 0.00 0.00 0.00 2.43
279 284 4.254492 GTGGTTCAAGGTGGAATCTCTAC 58.746 47.826 0.00 0.00 0.00 2.59
280 285 3.907474 TGGTTCAAGGTGGAATCTCTACA 59.093 43.478 0.00 0.00 28.51 2.74
281 286 4.020218 TGGTTCAAGGTGGAATCTCTACAG 60.020 45.833 0.00 0.00 28.51 2.74
282 287 4.223032 GGTTCAAGGTGGAATCTCTACAGA 59.777 45.833 0.00 0.00 28.51 3.41
283 288 5.172205 GTTCAAGGTGGAATCTCTACAGAC 58.828 45.833 0.00 0.00 28.51 3.51
285 290 5.087323 TCAAGGTGGAATCTCTACAGACTT 58.913 41.667 0.00 0.00 28.51 3.01
286 291 6.253758 TCAAGGTGGAATCTCTACAGACTTA 58.746 40.000 0.00 0.00 28.51 2.24
287 292 6.897966 TCAAGGTGGAATCTCTACAGACTTAT 59.102 38.462 0.00 0.00 28.51 1.73
288 293 8.059461 TCAAGGTGGAATCTCTACAGACTTATA 58.941 37.037 0.00 0.00 28.51 0.98
290 295 9.440761 AAGGTGGAATCTCTACAGACTTATATT 57.559 33.333 0.00 0.00 28.51 1.28
299 304 9.064706 TCTCTACAGACTTATATTTAGGAACGG 57.935 37.037 0.00 0.00 0.00 4.44
300 305 8.985315 TCTACAGACTTATATTTAGGAACGGA 57.015 34.615 0.00 0.00 0.00 4.69
301 306 9.064706 TCTACAGACTTATATTTAGGAACGGAG 57.935 37.037 0.00 0.00 0.00 4.63
302 307 7.052142 ACAGACTTATATTTAGGAACGGAGG 57.948 40.000 0.00 0.00 0.00 4.30
303 308 6.041751 ACAGACTTATATTTAGGAACGGAGGG 59.958 42.308 0.00 0.00 0.00 4.30
304 309 6.267014 CAGACTTATATTTAGGAACGGAGGGA 59.733 42.308 0.00 0.00 0.00 4.20
305 310 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
306 311 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
307 312 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
308 313 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
309 314 2.149973 TTAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
318 323 2.345991 GGGAGTACCTTGCGTGCA 59.654 61.111 0.00 0.00 35.85 4.57
445 1452 6.927381 TCTTTTACTCCAAGTAGCAAGTGTAC 59.073 38.462 0.00 0.00 31.47 2.90
636 1679 4.832823 TGACAACCTCTTGACACTGATAGA 59.167 41.667 0.00 0.00 28.72 1.98
861 1939 6.420008 GCATGATCCAGAAAAATACTCAATGC 59.580 38.462 0.00 0.00 0.00 3.56
967 2078 0.038744 CCTCCATCCTGCAACCAACT 59.961 55.000 0.00 0.00 0.00 3.16
1068 2179 2.583868 TGTGTCGGCGTGTGTGTC 60.584 61.111 6.85 0.00 0.00 3.67
1305 2416 0.110486 AGTTTGCCGACCTCACCAAT 59.890 50.000 0.00 0.00 0.00 3.16
1521 2632 0.331278 TGGAAGGGATCAACGCCATT 59.669 50.000 0.00 0.00 31.13 3.16
1770 2884 1.519234 CGCTAATGACGAGCAGGCA 60.519 57.895 0.00 0.00 45.56 4.75
2063 3257 5.529581 TGAAACCATTTCCTTTCTTGGTC 57.470 39.130 0.00 0.00 41.53 4.02
2208 3402 0.620700 AGTGGGGCGAGAAGGGTTAT 60.621 55.000 0.00 0.00 0.00 1.89
2291 3504 2.640826 CCTACCCAACCAAGGACAAGTA 59.359 50.000 0.00 0.00 31.64 2.24
2422 3639 4.714632 TCTTTCTCAATGGTTCCTTTCGT 58.285 39.130 0.00 0.00 0.00 3.85
2424 3641 6.292923 TCTTTCTCAATGGTTCCTTTCGTTA 58.707 36.000 0.00 0.00 0.00 3.18
2428 3645 7.519032 TCTCAATGGTTCCTTTCGTTAAAAT 57.481 32.000 0.00 0.00 0.00 1.82
2429 3646 7.367285 TCTCAATGGTTCCTTTCGTTAAAATG 58.633 34.615 0.00 0.00 0.00 2.32
2433 3650 4.278919 TGGTTCCTTTCGTTAAAATGGACC 59.721 41.667 0.00 0.00 29.44 4.46
2484 3701 6.515272 TTCCAAGTTTCTATTGAGATTGCC 57.485 37.500 0.00 0.00 0.00 4.52
2514 3731 4.097892 GTCTTGTCCTTCCAAACATGTTGT 59.902 41.667 12.82 0.00 0.00 3.32
2516 3733 3.625853 TGTCCTTCCAAACATGTTGTGA 58.374 40.909 12.82 8.97 0.00 3.58
2517 3734 3.631686 TGTCCTTCCAAACATGTTGTGAG 59.368 43.478 12.82 8.01 0.00 3.51
2518 3735 3.632145 GTCCTTCCAAACATGTTGTGAGT 59.368 43.478 12.82 0.00 0.00 3.41
2524 3741 4.759693 TCCAAACATGTTGTGAGTATGTCC 59.240 41.667 12.82 0.00 34.18 4.02
2589 3810 6.385649 ACCGAAGTCATTTTGTAACATGTT 57.614 33.333 16.68 16.68 0.00 2.71
2632 3853 6.402226 GGACCAATTGTCTAATGTTCTCGAAC 60.402 42.308 4.43 2.92 43.89 3.95
2777 3998 1.067060 GCACTGAACTGAAACCCCAAC 59.933 52.381 0.00 0.00 0.00 3.77
2844 4080 0.598942 TCGTCGTGTGGTCCAACATG 60.599 55.000 0.00 0.22 38.24 3.21
2855 4091 0.801872 TCCAACATGTCGGCGATTTG 59.198 50.000 14.79 16.24 0.00 2.32
2856 4092 0.521291 CCAACATGTCGGCGATTTGT 59.479 50.000 14.79 16.94 0.00 2.83
2904 4141 3.769739 TGGGTAGGTGCTAATGCTATG 57.230 47.619 0.00 0.00 40.48 2.23
2983 4222 5.177327 GCACCCACAAATTACAACAAAGATG 59.823 40.000 0.00 0.00 0.00 2.90
2984 4223 6.279882 CACCCACAAATTACAACAAAGATGT 58.720 36.000 0.00 0.00 43.14 3.06
2985 4224 7.429633 CACCCACAAATTACAACAAAGATGTA 58.570 34.615 0.00 0.00 39.40 2.29
2986 4225 7.381139 CACCCACAAATTACAACAAAGATGTAC 59.619 37.037 0.00 0.00 39.40 2.90
2987 4226 7.286775 ACCCACAAATTACAACAAAGATGTACT 59.713 33.333 0.00 0.00 39.40 2.73
2988 4227 7.807907 CCCACAAATTACAACAAAGATGTACTC 59.192 37.037 0.00 0.00 39.40 2.59
2989 4228 7.807907 CCACAAATTACAACAAAGATGTACTCC 59.192 37.037 0.00 0.00 39.40 3.85
2990 4229 7.807907 CACAAATTACAACAAAGATGTACTCCC 59.192 37.037 0.00 0.00 39.40 4.30
2991 4230 7.724061 ACAAATTACAACAAAGATGTACTCCCT 59.276 33.333 0.00 0.00 39.40 4.20
2992 4231 7.923414 AATTACAACAAAGATGTACTCCCTC 57.077 36.000 0.00 0.00 39.40 4.30
2993 4232 4.287766 ACAACAAAGATGTACTCCCTCC 57.712 45.455 0.00 0.00 39.40 4.30
2994 4233 3.650942 ACAACAAAGATGTACTCCCTCCA 59.349 43.478 0.00 0.00 39.40 3.86
2995 4234 4.289672 ACAACAAAGATGTACTCCCTCCAT 59.710 41.667 0.00 0.00 39.40 3.41
2996 4235 5.222130 ACAACAAAGATGTACTCCCTCCATT 60.222 40.000 0.00 0.00 39.40 3.16
2997 4236 5.104259 ACAAAGATGTACTCCCTCCATTC 57.896 43.478 0.00 0.00 38.24 2.67
2998 4237 4.080299 ACAAAGATGTACTCCCTCCATTCC 60.080 45.833 0.00 0.00 38.24 3.01
2999 4238 3.421394 AGATGTACTCCCTCCATTCCA 57.579 47.619 0.00 0.00 0.00 3.53
3000 4239 3.041946 AGATGTACTCCCTCCATTCCAC 58.958 50.000 0.00 0.00 0.00 4.02
3001 4240 2.335681 TGTACTCCCTCCATTCCACA 57.664 50.000 0.00 0.00 0.00 4.17
3002 4241 2.626785 TGTACTCCCTCCATTCCACAA 58.373 47.619 0.00 0.00 0.00 3.33
3003 4242 3.189606 TGTACTCCCTCCATTCCACAAT 58.810 45.455 0.00 0.00 0.00 2.71
3004 4243 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
3005 4244 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
3006 4245 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
3007 4246 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
3008 4247 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
3009 4248 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
3010 4249 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
3011 4250 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
3012 4251 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
3013 4252 4.406456 TCCATTCCACAATGTAGTGCTTT 58.594 39.130 0.00 0.00 38.22 3.51
3014 4253 4.458989 TCCATTCCACAATGTAGTGCTTTC 59.541 41.667 0.00 0.00 38.22 2.62
3015 4254 4.460382 CCATTCCACAATGTAGTGCTTTCT 59.540 41.667 0.00 0.00 38.22 2.52
3016 4255 5.392380 CCATTCCACAATGTAGTGCTTTCTC 60.392 44.000 0.00 0.00 38.22 2.87
3017 4256 4.623932 TCCACAATGTAGTGCTTTCTCT 57.376 40.909 0.00 0.00 38.18 3.10
3018 4257 5.738619 TCCACAATGTAGTGCTTTCTCTA 57.261 39.130 0.00 0.00 38.18 2.43
3019 4258 5.479306 TCCACAATGTAGTGCTTTCTCTAC 58.521 41.667 0.00 0.00 38.87 2.59
3020 4259 4.631813 CCACAATGTAGTGCTTTCTCTACC 59.368 45.833 0.00 0.00 38.09 3.18
3021 4260 4.631813 CACAATGTAGTGCTTTCTCTACCC 59.368 45.833 0.00 0.00 38.09 3.69
3022 4261 4.192317 CAATGTAGTGCTTTCTCTACCCC 58.808 47.826 0.00 0.00 38.09 4.95
3023 4262 1.822990 TGTAGTGCTTTCTCTACCCCG 59.177 52.381 0.00 0.00 38.09 5.73
3024 4263 1.823610 GTAGTGCTTTCTCTACCCCGT 59.176 52.381 0.00 0.00 34.75 5.28
3025 4264 0.608640 AGTGCTTTCTCTACCCCGTG 59.391 55.000 0.00 0.00 0.00 4.94
3026 4265 1.019805 GTGCTTTCTCTACCCCGTGC 61.020 60.000 0.00 0.00 0.00 5.34
3027 4266 1.192146 TGCTTTCTCTACCCCGTGCT 61.192 55.000 0.00 0.00 0.00 4.40
3028 4267 0.036294 GCTTTCTCTACCCCGTGCTT 60.036 55.000 0.00 0.00 0.00 3.91
3029 4268 2.007547 GCTTTCTCTACCCCGTGCTTC 61.008 57.143 0.00 0.00 0.00 3.86
3030 4269 1.275291 CTTTCTCTACCCCGTGCTTCA 59.725 52.381 0.00 0.00 0.00 3.02
3031 4270 1.344065 TTCTCTACCCCGTGCTTCAA 58.656 50.000 0.00 0.00 0.00 2.69
3032 4271 0.606604 TCTCTACCCCGTGCTTCAAC 59.393 55.000 0.00 0.00 0.00 3.18
3033 4272 0.608640 CTCTACCCCGTGCTTCAACT 59.391 55.000 0.00 0.00 0.00 3.16
3034 4273 1.002087 CTCTACCCCGTGCTTCAACTT 59.998 52.381 0.00 0.00 0.00 2.66
3035 4274 1.418637 TCTACCCCGTGCTTCAACTTT 59.581 47.619 0.00 0.00 0.00 2.66
3036 4275 1.535462 CTACCCCGTGCTTCAACTTTG 59.465 52.381 0.00 0.00 0.00 2.77
3037 4276 0.106918 ACCCCGTGCTTCAACTTTGA 60.107 50.000 0.00 0.00 34.92 2.69
3038 4277 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
3039 4278 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
3040 4279 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
3041 4280 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
3042 4281 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
3043 4282 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
3044 4283 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
3045 4284 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
3046 4285 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
3047 4286 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
3048 4287 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
3049 4288 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
3050 4289 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
3051 4290 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
3060 4299 8.483307 TGACCGTAAATTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
3061 4300 7.276218 TGACCGTAAATTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
3062 4301 7.322664 ACCGTAAATTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
3063 4302 7.983484 ACCGTAAATTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
3064 4303 8.823818 CCGTAAATTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
3065 4304 9.632969 CGTAAATTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
3066 4305 9.434559 GTAAATTTAACTATCAAGACCGATTGC 57.565 33.333 0.00 0.00 0.00 3.56
3067 4306 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
3091 4330 5.409643 CGGGAGCAAAAGTTATATCAGTG 57.590 43.478 0.00 0.00 0.00 3.66
3092 4331 5.116180 CGGGAGCAAAAGTTATATCAGTGA 58.884 41.667 0.00 0.00 0.00 3.41
3093 4332 5.584649 CGGGAGCAAAAGTTATATCAGTGAA 59.415 40.000 0.00 0.00 0.00 3.18
3094 4333 6.260936 CGGGAGCAAAAGTTATATCAGTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
3095 4334 7.201732 CGGGAGCAAAAGTTATATCAGTGAATT 60.202 37.037 0.00 0.00 0.00 2.17
3096 4335 8.131731 GGGAGCAAAAGTTATATCAGTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
3097 4336 7.852945 GGAGCAAAAGTTATATCAGTGAATTCG 59.147 37.037 0.00 0.00 0.00 3.34
3098 4337 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
3099 4338 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
3104 4343 9.961265 AAGTTATATCAGTGAATTCGTATTCGA 57.039 29.630 9.79 2.59 42.55 3.71
3138 4377 9.628746 TTTTAATTATGTAACTTTTTCTCCCGC 57.371 29.630 0.00 0.00 0.00 6.13
3139 4378 5.830000 ATTATGTAACTTTTTCTCCCGCC 57.170 39.130 0.00 0.00 0.00 6.13
3140 4379 1.515081 TGTAACTTTTTCTCCCGCCG 58.485 50.000 0.00 0.00 0.00 6.46
3141 4380 0.167470 GTAACTTTTTCTCCCGCCGC 59.833 55.000 0.00 0.00 0.00 6.53
3142 4381 0.250381 TAACTTTTTCTCCCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
3143 4382 1.515521 AACTTTTTCTCCCGCCGCAG 61.516 55.000 0.00 0.00 0.00 5.18
3144 4383 1.966451 CTTTTTCTCCCGCCGCAGT 60.966 57.895 0.00 0.00 0.00 4.40
3145 4384 1.912371 CTTTTTCTCCCGCCGCAGTC 61.912 60.000 0.00 0.00 0.00 3.51
3146 4385 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
3156 4395 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
3157 4396 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
3158 4397 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
3159 4398 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
3160 4399 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
3161 4400 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
3162 4401 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
3163 4402 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
3164 4403 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
3165 4404 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
3166 4405 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
3167 4406 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
3168 4407 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
3169 4408 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
3170 4409 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
3171 4410 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
3172 4411 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
3173 4412 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
3174 4413 8.225107 TCTCGTTCGTTAAATTTATGGTCAAAG 58.775 33.333 0.00 0.00 0.00 2.77
3175 4414 7.863666 TCGTTCGTTAAATTTATGGTCAAAGT 58.136 30.769 0.00 0.00 0.00 2.66
3176 4415 8.344098 TCGTTCGTTAAATTTATGGTCAAAGTT 58.656 29.630 0.00 0.00 31.36 2.66
3177 4416 8.624028 CGTTCGTTAAATTTATGGTCAAAGTTC 58.376 33.333 0.00 0.00 29.44 3.01
3178 4417 8.624028 GTTCGTTAAATTTATGGTCAAAGTTCG 58.376 33.333 0.00 0.00 29.44 3.95
3179 4418 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
3180 4419 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
3186 4425 3.879912 GTCAAAGTTCGACCTCGGA 57.120 52.632 0.00 0.00 40.29 4.55
3187 4426 2.144482 GTCAAAGTTCGACCTCGGAA 57.856 50.000 0.00 0.00 40.29 4.30
3188 4427 2.476821 GTCAAAGTTCGACCTCGGAAA 58.523 47.619 0.00 0.00 40.29 3.13
3189 4428 2.475487 GTCAAAGTTCGACCTCGGAAAG 59.525 50.000 0.00 0.00 40.29 2.62
3190 4429 1.194772 CAAAGTTCGACCTCGGAAAGC 59.805 52.381 0.00 0.00 40.29 3.51
3191 4430 0.666577 AAGTTCGACCTCGGAAAGCG 60.667 55.000 0.00 0.00 40.29 4.68
3192 4431 2.431942 TTCGACCTCGGAAAGCGC 60.432 61.111 0.00 0.00 40.29 5.92
3193 4432 4.771356 TCGACCTCGGAAAGCGCG 62.771 66.667 0.00 0.00 40.29 6.86
3207 4446 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
3208 4447 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
3209 4448 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
3210 4449 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
3211 4450 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
3212 4451 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
3213 4452 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
3214 4453 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
3215 4454 3.568007 GGGCGCACTATATTTTGGAATGA 59.432 43.478 10.83 0.00 0.00 2.57
3216 4455 4.037446 GGGCGCACTATATTTTGGAATGAA 59.963 41.667 10.83 0.00 0.00 2.57
3217 4456 5.215160 GGCGCACTATATTTTGGAATGAAG 58.785 41.667 10.83 0.00 0.00 3.02
3220 4459 5.530915 CGCACTATATTTTGGAATGAAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
3258 4497 5.496556 TCGTCCACTTTATCATTTGACCAT 58.503 37.500 0.00 0.00 0.00 3.55
3262 4501 6.375455 GTCCACTTTATCATTTGACCATGAGT 59.625 38.462 0.00 0.00 36.60 3.41
3263 4502 6.599244 TCCACTTTATCATTTGACCATGAGTC 59.401 38.462 0.00 0.39 46.51 3.36
3264 4503 6.183360 CCACTTTATCATTTGACCATGAGTCC 60.183 42.308 10.60 0.00 45.68 3.85
3265 4504 6.375174 CACTTTATCATTTGACCATGAGTCCA 59.625 38.462 10.60 0.00 45.68 4.02
3266 4505 7.067859 CACTTTATCATTTGACCATGAGTCCAT 59.932 37.037 10.60 2.59 45.68 3.41
3267 4506 6.947644 TTATCATTTGACCATGAGTCCATG 57.052 37.500 10.60 11.74 45.68 3.66
3278 4517 3.981071 TGAGTCCATGAGAAATCCGTT 57.019 42.857 0.00 0.00 0.00 4.44
3279 4518 4.286297 TGAGTCCATGAGAAATCCGTTT 57.714 40.909 0.00 0.00 0.00 3.60
3280 4519 4.253685 TGAGTCCATGAGAAATCCGTTTC 58.746 43.478 0.00 0.00 43.24 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 68 9.420118 TGTATAAACATTCTGGAAAAGGCATAT 57.580 29.630 0.00 0.00 0.00 1.78
151 156 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
152 157 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
154 159 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
170 175 7.400339 TCCATAGTGGAATCTCTACAAAGACTT 59.600 37.037 0.00 0.00 45.00 3.01
171 176 6.897966 TCCATAGTGGAATCTCTACAAAGACT 59.102 38.462 0.00 0.00 45.00 3.24
172 177 7.113658 TCCATAGTGGAATCTCTACAAAGAC 57.886 40.000 0.00 0.00 45.00 3.01
186 191 4.395625 CTCCGTATGTAGTCCATAGTGGA 58.604 47.826 0.00 0.00 45.98 4.02
187 192 3.057456 GCTCCGTATGTAGTCCATAGTGG 60.057 52.174 0.00 0.00 36.71 4.00
189 194 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
190 195 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
191 196 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
192 197 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
193 198 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
195 200 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
196 201 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
197 202 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
198 203 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
200 205 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
201 206 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
202 207 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
204 209 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
205 210 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
206 211 7.909121 CAGAGTGTAGATTCATTCATTTTGCTC 59.091 37.037 0.00 0.00 0.00 4.26
207 212 7.609146 TCAGAGTGTAGATTCATTCATTTTGCT 59.391 33.333 0.00 0.00 0.00 3.91
208 213 7.755591 TCAGAGTGTAGATTCATTCATTTTGC 58.244 34.615 0.00 0.00 0.00 3.68
213 218 7.555195 TGCATTTCAGAGTGTAGATTCATTCAT 59.445 33.333 0.00 0.00 0.00 2.57
214 219 6.880529 TGCATTTCAGAGTGTAGATTCATTCA 59.119 34.615 0.00 0.00 0.00 2.57
215 220 7.312657 TGCATTTCAGAGTGTAGATTCATTC 57.687 36.000 0.00 0.00 0.00 2.67
217 222 7.226918 CAGATGCATTTCAGAGTGTAGATTCAT 59.773 37.037 0.00 0.00 0.00 2.57
218 223 6.537660 CAGATGCATTTCAGAGTGTAGATTCA 59.462 38.462 0.00 0.00 0.00 2.57
219 224 6.538021 ACAGATGCATTTCAGAGTGTAGATTC 59.462 38.462 0.00 0.00 0.00 2.52
221 226 5.987098 ACAGATGCATTTCAGAGTGTAGAT 58.013 37.500 0.00 0.00 0.00 1.98
222 227 5.411831 ACAGATGCATTTCAGAGTGTAGA 57.588 39.130 0.00 0.00 0.00 2.59
226 231 7.095313 GGATGTATACAGATGCATTTCAGAGTG 60.095 40.741 11.91 0.00 38.38 3.51
227 232 6.933521 GGATGTATACAGATGCATTTCAGAGT 59.066 38.462 11.91 0.00 38.38 3.24
228 233 6.090493 CGGATGTATACAGATGCATTTCAGAG 59.910 42.308 11.91 0.00 38.38 3.35
229 234 5.928264 CGGATGTATACAGATGCATTTCAGA 59.072 40.000 11.91 0.00 38.38 3.27
230 235 5.698089 ACGGATGTATACAGATGCATTTCAG 59.302 40.000 11.91 4.83 38.38 3.02
234 239 6.591448 CACATACGGATGTATACAGATGCATT 59.409 38.462 14.23 0.00 44.82 3.56
235 240 6.101997 CACATACGGATGTATACAGATGCAT 58.898 40.000 14.23 0.00 44.82 3.96
236 241 5.469479 CACATACGGATGTATACAGATGCA 58.531 41.667 14.23 0.00 44.82 3.96
237 242 4.864806 CCACATACGGATGTATACAGATGC 59.135 45.833 14.23 0.00 44.82 3.91
238 243 6.025749 ACCACATACGGATGTATACAGATG 57.974 41.667 14.23 11.05 44.82 2.90
239 244 6.266786 TGAACCACATACGGATGTATACAGAT 59.733 38.462 14.23 0.00 44.82 2.90
240 245 5.595133 TGAACCACATACGGATGTATACAGA 59.405 40.000 14.23 0.00 44.82 3.41
243 248 5.694910 CCTTGAACCACATACGGATGTATAC 59.305 44.000 14.23 6.24 44.82 1.47
245 250 4.163458 ACCTTGAACCACATACGGATGTAT 59.837 41.667 14.23 1.38 44.82 2.29
248 253 2.677836 CACCTTGAACCACATACGGATG 59.322 50.000 5.94 5.94 39.16 3.51
250 255 1.002659 CCACCTTGAACCACATACGGA 59.997 52.381 0.00 0.00 0.00 4.69
251 256 1.002659 TCCACCTTGAACCACATACGG 59.997 52.381 0.00 0.00 0.00 4.02
252 257 2.465860 TCCACCTTGAACCACATACG 57.534 50.000 0.00 0.00 0.00 3.06
255 260 3.331889 AGAGATTCCACCTTGAACCACAT 59.668 43.478 0.00 0.00 0.00 3.21
256 261 2.711009 AGAGATTCCACCTTGAACCACA 59.289 45.455 0.00 0.00 0.00 4.17
257 262 3.425162 AGAGATTCCACCTTGAACCAC 57.575 47.619 0.00 0.00 0.00 4.16
258 263 3.907474 TGTAGAGATTCCACCTTGAACCA 59.093 43.478 0.00 0.00 0.00 3.67
260 265 5.046950 AGTCTGTAGAGATTCCACCTTGAAC 60.047 44.000 0.00 0.00 0.00 3.18
261 266 5.087323 AGTCTGTAGAGATTCCACCTTGAA 58.913 41.667 0.00 0.00 0.00 2.69
263 268 5.413309 AAGTCTGTAGAGATTCCACCTTG 57.587 43.478 0.00 0.00 0.00 3.61
274 279 9.064706 TCCGTTCCTAAATATAAGTCTGTAGAG 57.935 37.037 0.00 0.00 0.00 2.43
275 280 8.985315 TCCGTTCCTAAATATAAGTCTGTAGA 57.015 34.615 0.00 0.00 0.00 2.59
276 281 8.298140 CCTCCGTTCCTAAATATAAGTCTGTAG 58.702 40.741 0.00 0.00 0.00 2.74
277 282 7.232127 CCCTCCGTTCCTAAATATAAGTCTGTA 59.768 40.741 0.00 0.00 0.00 2.74
278 283 6.041751 CCCTCCGTTCCTAAATATAAGTCTGT 59.958 42.308 0.00 0.00 0.00 3.41
279 284 6.267014 TCCCTCCGTTCCTAAATATAAGTCTG 59.733 42.308 0.00 0.00 0.00 3.51
280 285 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
281 286 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
282 287 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
283 288 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
285 290 6.012745 GGTACTCCCTCCGTTCCTAAATATA 58.987 44.000 0.00 0.00 0.00 0.86
286 291 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
287 292 4.078980 AGGTACTCCCTCCGTTCCTAAATA 60.079 45.833 0.00 0.00 40.71 1.40
288 293 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
290 295 1.642762 AGGTACTCCCTCCGTTCCTAA 59.357 52.381 0.00 0.00 40.71 2.69
293 298 0.535797 CAAGGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 45.47 3.62
294 299 0.108281 GCAAGGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 45.47 3.95
295 300 1.885163 CGCAAGGTACTCCCTCCGTT 61.885 60.000 0.00 0.00 45.47 4.44
296 301 2.348888 CGCAAGGTACTCCCTCCGT 61.349 63.158 0.00 0.00 45.47 4.69
297 302 2.348888 ACGCAAGGTACTCCCTCCG 61.349 63.158 0.00 0.00 45.47 4.63
298 303 1.218316 CACGCAAGGTACTCCCTCC 59.782 63.158 0.00 0.00 45.47 4.30
299 304 1.448013 GCACGCAAGGTACTCCCTC 60.448 63.158 0.00 0.00 45.47 4.30
301 306 0.177141 TATGCACGCAAGGTACTCCC 59.823 55.000 0.00 0.00 38.49 4.30
302 307 1.571919 CTATGCACGCAAGGTACTCC 58.428 55.000 0.00 0.00 38.49 3.85
303 308 0.931005 GCTATGCACGCAAGGTACTC 59.069 55.000 5.03 0.00 38.49 2.59
305 310 1.062587 CAAGCTATGCACGCAAGGTAC 59.937 52.381 11.85 0.00 46.39 3.34
306 311 1.368641 CAAGCTATGCACGCAAGGTA 58.631 50.000 11.85 0.00 46.39 3.08
307 312 2.174334 CAAGCTATGCACGCAAGGT 58.826 52.632 11.85 0.00 46.39 3.50
373 633 4.573607 GTCATGTGCATACAGTGACATCAT 59.426 41.667 9.90 0.00 40.74 2.45
445 1452 7.982354 AGTAAGGAAATTTTATCTCCTCGTGAG 59.018 37.037 0.00 0.00 38.69 3.51
460 1467 7.750655 ACCTTCTGAGAGAAAGTAAGGAAATT 58.249 34.615 5.95 0.00 37.51 1.82
861 1939 7.914346 GTCAAATGGAGAAAAGATAAGATGCAG 59.086 37.037 0.00 0.00 0.00 4.41
967 2078 0.179004 AATGGAAGTGTTGGCGGTCA 60.179 50.000 0.00 0.00 0.00 4.02
1068 2179 0.941463 AGAAGTCACTGTTGCGAGCG 60.941 55.000 0.00 0.00 0.00 5.03
1305 2416 2.357034 GCGGCCTTGAACTCGTCA 60.357 61.111 0.00 0.00 0.00 4.35
1395 2506 2.435059 GACTTGGGCAGGTCGCTC 60.435 66.667 0.00 0.00 43.80 5.03
1755 2869 0.894835 TCAGTGCCTGCTCGTCATTA 59.105 50.000 0.00 0.00 0.00 1.90
2063 3257 1.135972 CATCGAAAACTCCCTGCAACG 60.136 52.381 0.00 0.00 0.00 4.10
2121 3315 1.755783 GTCCGACCCGTATCCCACT 60.756 63.158 0.00 0.00 0.00 4.00
2124 3318 1.440476 CTTGTCCGACCCGTATCCC 59.560 63.158 0.00 0.00 0.00 3.85
2127 3321 2.062177 CCCCTTGTCCGACCCGTAT 61.062 63.158 0.00 0.00 0.00 3.06
2208 3402 2.050144 GTGCCCCTCTTCATCCTGATA 58.950 52.381 0.00 0.00 0.00 2.15
2291 3504 2.532843 AGCATTTGAGGCTGGAACATT 58.467 42.857 0.00 0.00 40.80 2.71
2422 3639 5.389520 TCAGTCCATGTTGGTCCATTTTAA 58.610 37.500 0.00 0.00 39.03 1.52
2424 3641 3.843422 TCAGTCCATGTTGGTCCATTTT 58.157 40.909 0.00 0.00 39.03 1.82
2428 3645 3.524095 ATTTCAGTCCATGTTGGTCCA 57.476 42.857 0.00 0.00 39.03 4.02
2429 3646 7.639113 TTATTATTTCAGTCCATGTTGGTCC 57.361 36.000 0.00 0.00 39.03 4.46
2484 3701 2.833794 TGGAAGGACAAGACAAACTCG 58.166 47.619 0.00 0.00 0.00 4.18
2524 3741 4.039703 TGACACTTACGTCTGAAGTTTCG 58.960 43.478 0.75 0.00 36.72 3.46
2595 3816 3.139397 ACAATTGGTCCCAGTGTCCTTTA 59.861 43.478 10.83 0.00 0.00 1.85
2632 3853 8.818057 CGAAGTTTCTAGACCACCTTATTTATG 58.182 37.037 0.00 0.00 0.00 1.90
2756 3977 0.257328 TGGGGTTTCAGTTCAGTGCA 59.743 50.000 0.00 0.00 0.00 4.57
2777 3998 8.425577 AGGAAATAGTATCGTTGAACAATGAG 57.574 34.615 13.54 0.17 39.43 2.90
2844 4080 2.650297 CGAAGAAAAACAAATCGCCGAC 59.350 45.455 0.00 0.00 0.00 4.79
2855 4091 6.250739 GCCGATATTCCTTTTCGAAGAAAAAC 59.749 38.462 8.92 0.00 45.90 2.43
2856 4092 6.319399 GCCGATATTCCTTTTCGAAGAAAAA 58.681 36.000 8.92 0.00 45.90 1.94
2904 4141 1.603739 GGGTTGGTCTCCACTTGCC 60.604 63.158 0.00 0.00 30.78 4.52
2983 4222 3.054361 ACATTGTGGAATGGAGGGAGTAC 60.054 47.826 0.00 0.00 43.00 2.73
2984 4223 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
2985 4224 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
2986 4225 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
2987 4226 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
2991 4230 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
2992 4231 4.460382 AGAAAGCACTACATTGTGGAATGG 59.540 41.667 7.20 0.00 43.00 3.16
2993 4232 5.413833 AGAGAAAGCACTACATTGTGGAATG 59.586 40.000 7.20 0.00 44.11 2.67
2994 4233 5.564550 AGAGAAAGCACTACATTGTGGAAT 58.435 37.500 7.20 0.00 38.31 3.01
2995 4234 4.973168 AGAGAAAGCACTACATTGTGGAA 58.027 39.130 7.20 0.00 38.31 3.53
2996 4235 4.623932 AGAGAAAGCACTACATTGTGGA 57.376 40.909 7.20 0.00 38.31 4.02
2997 4236 4.631813 GGTAGAGAAAGCACTACATTGTGG 59.368 45.833 0.00 0.00 39.18 4.17
2998 4237 4.631813 GGGTAGAGAAAGCACTACATTGTG 59.368 45.833 0.00 0.00 39.18 3.33
2999 4238 4.323562 GGGGTAGAGAAAGCACTACATTGT 60.324 45.833 0.00 0.00 39.18 2.71
3000 4239 4.192317 GGGGTAGAGAAAGCACTACATTG 58.808 47.826 0.00 0.00 39.18 2.82
3001 4240 3.118738 CGGGGTAGAGAAAGCACTACATT 60.119 47.826 0.00 0.00 39.18 2.71
3002 4241 2.431057 CGGGGTAGAGAAAGCACTACAT 59.569 50.000 0.00 0.00 39.18 2.29
3003 4242 1.822990 CGGGGTAGAGAAAGCACTACA 59.177 52.381 0.00 0.00 39.18 2.74
3004 4243 1.823610 ACGGGGTAGAGAAAGCACTAC 59.176 52.381 0.00 0.00 37.44 2.73
3005 4244 1.822990 CACGGGGTAGAGAAAGCACTA 59.177 52.381 0.00 0.00 0.00 2.74
3006 4245 0.608640 CACGGGGTAGAGAAAGCACT 59.391 55.000 0.00 0.00 0.00 4.40
3007 4246 1.019805 GCACGGGGTAGAGAAAGCAC 61.020 60.000 0.00 0.00 0.00 4.40
3008 4247 1.192146 AGCACGGGGTAGAGAAAGCA 61.192 55.000 0.00 0.00 0.00 3.91
3009 4248 0.036294 AAGCACGGGGTAGAGAAAGC 60.036 55.000 0.00 0.00 0.00 3.51
3010 4249 1.275291 TGAAGCACGGGGTAGAGAAAG 59.725 52.381 0.00 0.00 0.00 2.62
3011 4250 1.344065 TGAAGCACGGGGTAGAGAAA 58.656 50.000 0.00 0.00 0.00 2.52
3012 4251 1.001633 GTTGAAGCACGGGGTAGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
3013 4252 0.606604 GTTGAAGCACGGGGTAGAGA 59.393 55.000 0.00 0.00 0.00 3.10
3014 4253 0.608640 AGTTGAAGCACGGGGTAGAG 59.391 55.000 0.00 0.00 0.00 2.43
3015 4254 1.053424 AAGTTGAAGCACGGGGTAGA 58.947 50.000 0.00 0.00 0.00 2.59
3016 4255 1.535462 CAAAGTTGAAGCACGGGGTAG 59.465 52.381 0.00 0.00 0.00 3.18
3017 4256 1.141254 TCAAAGTTGAAGCACGGGGTA 59.859 47.619 0.00 0.00 33.55 3.69
3018 4257 0.106918 TCAAAGTTGAAGCACGGGGT 60.107 50.000 0.00 0.00 33.55 4.95
3019 4258 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
3020 4259 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
3021 4260 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
3022 4261 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
3023 4262 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
3024 4263 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
3025 4264 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
3034 4273 8.938906 GGTCTTGATAGTTAAATTTACGGTCAA 58.061 33.333 0.00 6.02 0.00 3.18
3035 4274 7.276218 CGGTCTTGATAGTTAAATTTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
3036 4275 7.489113 TCGGTCTTGATAGTTAAATTTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
3037 4276 7.322664 TCGGTCTTGATAGTTAAATTTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
3038 4277 7.760131 TCGGTCTTGATAGTTAAATTTACGG 57.240 36.000 0.00 0.00 0.00 4.02
3039 4278 9.632969 CAATCGGTCTTGATAGTTAAATTTACG 57.367 33.333 0.00 0.00 0.00 3.18
3040 4279 9.434559 GCAATCGGTCTTGATAGTTAAATTTAC 57.565 33.333 0.00 0.00 0.00 2.01
3041 4280 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
3042 4281 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
3043 4282 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
3044 4283 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
3045 4284 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
3061 4300 2.872337 CTTTTGCTCCCGCCGCAATC 62.872 60.000 5.33 0.00 45.67 2.67
3062 4301 2.988684 TTTTGCTCCCGCCGCAAT 60.989 55.556 5.33 0.00 45.67 3.56
3063 4302 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
3064 4303 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
3065 4304 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
3066 4305 1.658994 TATAACTTTTGCTCCCGCCG 58.341 50.000 0.00 0.00 34.43 6.46
3067 4306 3.211045 TGATATAACTTTTGCTCCCGCC 58.789 45.455 0.00 0.00 34.43 6.13
3068 4307 3.877508 ACTGATATAACTTTTGCTCCCGC 59.122 43.478 0.00 0.00 0.00 6.13
3069 4308 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
3070 4309 7.573968 ATTCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
3071 4310 7.852945 CGAATTCACTGATATAACTTTTGCTCC 59.147 37.037 6.22 0.00 0.00 4.70
3072 4311 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
3073 4312 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
3078 4317 9.961265 TCGAATACGAATTCACTGATATAACTT 57.039 29.630 6.22 0.00 45.74 2.66
3112 4351 9.628746 GCGGGAGAAAAAGTTACATAATTAAAA 57.371 29.630 0.00 0.00 0.00 1.52
3113 4352 8.245491 GGCGGGAGAAAAAGTTACATAATTAAA 58.755 33.333 0.00 0.00 0.00 1.52
3114 4353 7.414319 CGGCGGGAGAAAAAGTTACATAATTAA 60.414 37.037 0.00 0.00 0.00 1.40
3115 4354 6.037391 CGGCGGGAGAAAAAGTTACATAATTA 59.963 38.462 0.00 0.00 0.00 1.40
3116 4355 5.163693 CGGCGGGAGAAAAAGTTACATAATT 60.164 40.000 0.00 0.00 0.00 1.40
3117 4356 4.334481 CGGCGGGAGAAAAAGTTACATAAT 59.666 41.667 0.00 0.00 0.00 1.28
3118 4357 3.685756 CGGCGGGAGAAAAAGTTACATAA 59.314 43.478 0.00 0.00 0.00 1.90
3119 4358 3.264104 CGGCGGGAGAAAAAGTTACATA 58.736 45.455 0.00 0.00 0.00 2.29
3120 4359 2.081462 CGGCGGGAGAAAAAGTTACAT 58.919 47.619 0.00 0.00 0.00 2.29
3121 4360 1.515081 CGGCGGGAGAAAAAGTTACA 58.485 50.000 0.00 0.00 0.00 2.41
3122 4361 0.167470 GCGGCGGGAGAAAAAGTTAC 59.833 55.000 9.78 0.00 0.00 2.50
3123 4362 0.250381 TGCGGCGGGAGAAAAAGTTA 60.250 50.000 9.78 0.00 0.00 2.24
3124 4363 1.515521 CTGCGGCGGGAGAAAAAGTT 61.516 55.000 9.78 0.00 32.53 2.66
3125 4364 1.966451 CTGCGGCGGGAGAAAAAGT 60.966 57.895 9.78 0.00 32.53 2.66
3126 4365 1.912371 GACTGCGGCGGGAGAAAAAG 61.912 60.000 19.55 0.00 35.29 2.27
3127 4366 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
3128 4367 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
3129 4368 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
3139 4378 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
3140 4379 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
3141 4380 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
3142 4381 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
3143 4382 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
3144 4383 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
3145 4384 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
3146 4385 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
3147 4386 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
3148 4387 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
3149 4388 8.013378 ACTTTGACCATAAATTTAACGAACGAG 58.987 33.333 1.21 0.01 0.00 4.18
3150 4389 7.863666 ACTTTGACCATAAATTTAACGAACGA 58.136 30.769 1.21 0.00 0.00 3.85
3151 4390 8.496872 AACTTTGACCATAAATTTAACGAACG 57.503 30.769 1.21 0.00 0.00 3.95
3152 4391 8.624028 CGAACTTTGACCATAAATTTAACGAAC 58.376 33.333 1.21 0.00 0.00 3.95
3153 4392 8.557864 TCGAACTTTGACCATAAATTTAACGAA 58.442 29.630 1.21 1.12 0.00 3.85
3154 4393 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
3155 4394 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
3168 4407 2.144482 TTCCGAGGTCGAACTTTGAC 57.856 50.000 3.47 0.86 43.02 3.18
3169 4408 2.750948 CTTTCCGAGGTCGAACTTTGA 58.249 47.619 3.47 0.91 43.02 2.69
3170 4409 1.194772 GCTTTCCGAGGTCGAACTTTG 59.805 52.381 3.47 0.00 43.02 2.77
3171 4410 1.509703 GCTTTCCGAGGTCGAACTTT 58.490 50.000 3.47 0.00 43.02 2.66
3172 4411 0.666577 CGCTTTCCGAGGTCGAACTT 60.667 55.000 3.47 0.00 43.02 2.66
3173 4412 1.080705 CGCTTTCCGAGGTCGAACT 60.081 57.895 0.34 0.34 43.02 3.01
3174 4413 2.727684 GCGCTTTCCGAGGTCGAAC 61.728 63.158 0.00 0.00 43.02 3.95
3175 4414 2.431942 GCGCTTTCCGAGGTCGAA 60.432 61.111 0.00 0.00 43.02 3.71
3176 4415 4.771356 CGCGCTTTCCGAGGTCGA 62.771 66.667 5.56 0.00 43.02 4.20
3190 4429 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
3191 4430 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
3192 4431 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
3193 4432 3.568007 TCATTCCAAAATATAGTGCGCCC 59.432 43.478 4.18 0.00 0.00 6.13
3194 4433 4.829064 TCATTCCAAAATATAGTGCGCC 57.171 40.909 4.18 0.00 0.00 6.53
3195 4434 5.215160 CCTTCATTCCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
3196 4435 5.530915 TCCCTTCATTCCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
3197 4436 6.547510 ACTCCCTTCATTCCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
3198 4437 9.799106 ATACTCCCTTCATTCCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
3199 4438 9.799106 CATACTCCCTTCATTCCAAAATATAGT 57.201 33.333 0.00 0.00 0.00 2.12
3200 4439 9.799106 ACATACTCCCTTCATTCCAAAATATAG 57.201 33.333 0.00 0.00 0.00 1.31
3203 4442 9.573166 CATACATACTCCCTTCATTCCAAAATA 57.427 33.333 0.00 0.00 0.00 1.40
3204 4443 8.281531 TCATACATACTCCCTTCATTCCAAAAT 58.718 33.333 0.00 0.00 0.00 1.82
3205 4444 7.638444 TCATACATACTCCCTTCATTCCAAAA 58.362 34.615 0.00 0.00 0.00 2.44
3206 4445 7.206789 TCATACATACTCCCTTCATTCCAAA 57.793 36.000 0.00 0.00 0.00 3.28
3207 4446 6.823286 TCATACATACTCCCTTCATTCCAA 57.177 37.500 0.00 0.00 0.00 3.53
3208 4447 6.558394 TGATCATACATACTCCCTTCATTCCA 59.442 38.462 0.00 0.00 0.00 3.53
3209 4448 7.009179 TGATCATACATACTCCCTTCATTCC 57.991 40.000 0.00 0.00 0.00 3.01
3210 4449 9.160496 GATTGATCATACATACTCCCTTCATTC 57.840 37.037 0.00 0.00 0.00 2.67
3211 4450 7.821359 CGATTGATCATACATACTCCCTTCATT 59.179 37.037 0.00 0.00 0.00 2.57
3212 4451 7.038729 ACGATTGATCATACATACTCCCTTCAT 60.039 37.037 0.00 0.00 0.00 2.57
3213 4452 6.267699 ACGATTGATCATACATACTCCCTTCA 59.732 38.462 0.00 0.00 0.00 3.02
3214 4453 6.692486 ACGATTGATCATACATACTCCCTTC 58.308 40.000 0.00 0.00 0.00 3.46
3215 4454 6.295349 GGACGATTGATCATACATACTCCCTT 60.295 42.308 0.00 0.00 0.00 3.95
3216 4455 5.186021 GGACGATTGATCATACATACTCCCT 59.814 44.000 0.00 0.00 0.00 4.20
3217 4456 5.047306 TGGACGATTGATCATACATACTCCC 60.047 44.000 0.00 0.00 0.00 4.30
3220 4459 6.656632 AGTGGACGATTGATCATACATACT 57.343 37.500 0.00 0.00 0.00 2.12
3258 4497 3.981071 AACGGATTTCTCATGGACTCA 57.019 42.857 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.