Multiple sequence alignment - TraesCS5D01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G152100 chr5D 100.000 5571 0 0 1 5571 241244151 241249721 0.000000e+00 10288.0
1 TraesCS5D01G152100 chr5D 100.000 2390 0 0 5931 8320 241250081 241252470 0.000000e+00 4414.0
2 TraesCS5D01G152100 chr5B 97.625 5347 74 12 231 5542 262430648 262425320 0.000000e+00 9121.0
3 TraesCS5D01G152100 chr5B 93.423 1642 80 14 5931 7558 262425018 262423391 0.000000e+00 2409.0
4 TraesCS5D01G152100 chr5B 92.126 127 10 0 1 127 262442371 262442245 6.630000e-41 180.0
5 TraesCS5D01G152100 chr5B 87.407 135 2 5 121 240 262432298 262432164 3.130000e-29 141.0
6 TraesCS5D01G152100 chr5A 96.911 4014 111 9 163 4171 310968536 310972541 0.000000e+00 6713.0
7 TraesCS5D01G152100 chr5A 95.704 1094 38 2 6089 7173 310973613 310974706 0.000000e+00 1751.0
8 TraesCS5D01G152100 chr5A 95.283 954 20 3 4510 5439 310972537 310973489 0.000000e+00 1489.0
9 TraesCS5D01G152100 chr5A 88.196 593 31 7 7165 7719 310976119 310976710 0.000000e+00 671.0
10 TraesCS5D01G152100 chr5A 85.919 419 42 11 7854 8267 310976801 310977207 1.660000e-116 431.0
11 TraesCS5D01G152100 chr5A 86.667 90 11 1 7853 7942 679650442 679650530 1.910000e-16 99.0
12 TraesCS5D01G152100 chr5A 97.143 35 1 0 8283 8317 310977186 310977220 9.020000e-05 60.2
13 TraesCS5D01G152100 chr4D 78.971 447 75 13 3117 3549 109272751 109273192 3.800000e-73 287.0
14 TraesCS5D01G152100 chr4D 86.364 220 27 1 1745 1964 109270778 109270994 3.880000e-58 237.0
15 TraesCS5D01G152100 chr4D 90.588 170 15 1 4937 5105 109274131 109274300 3.020000e-54 224.0
16 TraesCS5D01G152100 chr4D 90.385 156 15 0 3924 4079 109273468 109273623 1.090000e-48 206.0
17 TraesCS5D01G152100 chr4D 82.090 134 22 2 3925 4057 111598741 111598609 6.830000e-21 113.0
18 TraesCS5D01G152100 chr4A 78.788 429 75 11 3117 3532 467248844 467248419 2.960000e-69 274.0
19 TraesCS5D01G152100 chr4A 84.977 213 32 0 1752 1964 467250618 467250406 5.060000e-52 217.0
20 TraesCS5D01G152100 chr4A 89.412 170 17 1 4937 5105 467247453 467247284 6.540000e-51 213.0
21 TraesCS5D01G152100 chr4A 91.026 156 14 0 3924 4079 467248128 467247973 2.350000e-50 211.0
22 TraesCS5D01G152100 chr4A 82.707 133 23 0 3925 4057 465530822 465530954 1.470000e-22 119.0
23 TraesCS5D01G152100 chr4B 90.588 170 15 1 4937 5105 167350923 167350754 3.020000e-54 224.0
24 TraesCS5D01G152100 chr4B 85.446 213 31 0 1752 1964 167354470 167354258 1.090000e-53 222.0
25 TraesCS5D01G152100 chr4B 90.385 156 15 0 3924 4079 167351603 167351448 1.090000e-48 206.0
26 TraesCS5D01G152100 chr4B 81.955 133 24 0 3925 4057 172391599 172391467 6.830000e-21 113.0
27 TraesCS5D01G152100 chr2A 79.655 290 43 6 7578 7854 748077628 748077342 2.370000e-45 195.0
28 TraesCS5D01G152100 chr2A 84.706 170 22 4 7957 8123 758682301 758682133 5.170000e-37 167.0
29 TraesCS5D01G152100 chr1A 88.372 86 8 1 7853 7938 95047563 95047480 1.480000e-17 102.0
30 TraesCS5D01G152100 chrUn 97.561 41 1 0 1 41 94830758 94830718 4.170000e-08 71.3
31 TraesCS5D01G152100 chr3B 93.023 43 2 1 7773 7814 610223785 610223743 2.510000e-05 62.1
32 TraesCS5D01G152100 chr7D 97.143 35 1 0 7774 7808 497930265 497930231 9.020000e-05 60.2
33 TraesCS5D01G152100 chr3A 94.444 36 2 0 7774 7809 739149053 739149018 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G152100 chr5D 241244151 241252470 8319 False 7351.000000 10288 100.000000 1 8320 2 chr5D.!!$F1 8319
1 TraesCS5D01G152100 chr5B 262423391 262432298 8907 True 3890.333333 9121 92.818333 121 7558 3 chr5B.!!$R2 7437
2 TraesCS5D01G152100 chr5A 310968536 310977220 8684 False 1852.533333 6713 93.192667 163 8317 6 chr5A.!!$F2 8154
3 TraesCS5D01G152100 chr4D 109270778 109274300 3522 False 238.500000 287 86.577000 1745 5105 4 chr4D.!!$F1 3360
4 TraesCS5D01G152100 chr4A 467247284 467250618 3334 True 228.750000 274 86.050750 1752 5105 4 chr4A.!!$R1 3353
5 TraesCS5D01G152100 chr4B 167350754 167354470 3716 True 217.333333 224 88.806333 1752 5105 3 chr4B.!!$R2 3353

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.107643 TCGGGACAGACATGCACAAA 59.892 50.000 0.00 0.00 0.00 2.83 F
547 2095 0.185901 TTCTTTGCTTCTGGCCCTGT 59.814 50.000 0.00 0.00 40.92 4.00 F
1920 3468 0.692476 TGTGATAACTGCCCAGCTGT 59.308 50.000 13.81 0.00 42.21 4.40 F
2749 4325 4.377021 TCATGCCTTCGGATACATACAAC 58.623 43.478 0.00 0.00 0.00 3.32 F
3874 6615 1.974957 TGCAGGCTTAGGTAGTTGTCA 59.025 47.619 0.00 0.00 0.00 3.58 F
4105 6846 3.890756 TCAACTGCATTCATTCCACACTT 59.109 39.130 0.00 0.00 0.00 3.16 F
5548 8527 1.656587 AGACACCCAGTTGCTATGGA 58.343 50.000 4.25 0.00 40.51 3.41 F
5552 8531 2.041620 ACACCCAGTTGCTATGGATGTT 59.958 45.455 4.25 0.00 42.22 2.71 F
6698 9678 1.079474 TGAATCAAGCGGCGCTACA 60.079 52.632 36.59 24.44 38.25 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1920 3468 1.609555 GGTTGTAAATGCCAACACCGA 59.390 47.619 5.73 0.00 43.10 4.69 R
2453 4027 5.246981 TCCATCTAAGCCCTCCAAATATG 57.753 43.478 0.00 0.00 0.00 1.78 R
3086 5623 6.148480 GCATGTGATCTAGTCAATAATCCCAC 59.852 42.308 0.00 0.00 38.90 4.61 R
4260 7214 0.439985 CAAATGTGACTCTCCGCACG 59.560 55.000 0.00 0.00 37.83 5.34 R
4677 7631 2.086869 AGCGTTGGAATGAATCACCTG 58.913 47.619 0.00 0.00 0.00 4.00 R
5997 8976 1.518325 ATGAAAACATCACGCGGTCA 58.482 45.000 12.47 0.79 41.93 4.02 R
6518 9497 0.593128 TTGAAGAAAGAGCAAGCCGC 59.407 50.000 0.00 0.00 42.91 6.53 R
6811 9791 1.082038 CGGCTACGTCTAGGATGCG 60.082 63.158 0.00 0.00 34.81 4.73 R
7943 12438 0.108329 AAGCCAACTACGCATACGCT 60.108 50.000 0.00 0.00 45.53 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.530857 CTCGTCCCGGCCATGGTC 62.531 72.222 14.67 10.70 0.00 4.02
26 27 4.402528 CGTCCCGGCCATGGTCAA 62.403 66.667 18.31 0.00 0.00 3.18
27 28 2.750237 GTCCCGGCCATGGTCAAC 60.750 66.667 18.31 7.46 0.00 3.18
28 29 4.402528 TCCCGGCCATGGTCAACG 62.403 66.667 18.31 14.25 0.00 4.10
29 30 4.715523 CCCGGCCATGGTCAACGT 62.716 66.667 18.31 0.00 0.00 3.99
30 31 3.430862 CCGGCCATGGTCAACGTG 61.431 66.667 18.31 0.00 35.80 4.49
31 32 4.101790 CGGCCATGGTCAACGTGC 62.102 66.667 18.31 0.00 34.66 5.34
32 33 2.983030 GGCCATGGTCAACGTGCA 60.983 61.111 12.68 0.00 34.66 4.57
33 34 2.255252 GCCATGGTCAACGTGCAC 59.745 61.111 14.67 6.82 34.66 4.57
34 35 2.953821 CCATGGTCAACGTGCACC 59.046 61.111 12.15 8.90 34.66 5.01
35 36 2.555782 CATGGTCAACGTGCACCG 59.444 61.111 12.15 9.19 44.03 4.94
36 37 2.668212 ATGGTCAACGTGCACCGG 60.668 61.111 12.15 0.00 42.24 5.28
42 43 4.980805 AACGTGCACCGGCGTCAT 62.981 61.111 12.15 0.00 45.35 3.06
43 44 4.980805 ACGTGCACCGGCGTCATT 62.981 61.111 12.15 0.00 45.35 2.57
44 45 4.147322 CGTGCACCGGCGTCATTC 62.147 66.667 12.15 0.00 45.35 2.67
45 46 3.799755 GTGCACCGGCGTCATTCC 61.800 66.667 5.22 0.00 45.35 3.01
46 47 4.015406 TGCACCGGCGTCATTCCT 62.015 61.111 6.01 0.00 45.35 3.36
47 48 3.195698 GCACCGGCGTCATTCCTC 61.196 66.667 6.01 0.00 0.00 3.71
48 49 2.885644 CACCGGCGTCATTCCTCG 60.886 66.667 6.01 0.00 0.00 4.63
54 55 4.847516 CGTCATTCCTCGCCGCGA 62.848 66.667 15.90 15.90 0.00 5.87
69 70 4.127040 CGAGCTCTCCTGCACGCT 62.127 66.667 12.85 0.00 39.71 5.07
70 71 2.765356 CGAGCTCTCCTGCACGCTA 61.765 63.158 12.85 0.00 39.71 4.26
71 72 1.226831 GAGCTCTCCTGCACGCTAC 60.227 63.158 6.43 0.00 31.96 3.58
72 73 2.580867 GCTCTCCTGCACGCTACG 60.581 66.667 0.00 0.00 0.00 3.51
73 74 2.878429 CTCTCCTGCACGCTACGT 59.122 61.111 0.00 0.00 42.36 3.57
102 103 3.465701 TGTCGGGACAGACATGCA 58.534 55.556 1.15 0.00 45.18 3.96
103 104 1.005037 TGTCGGGACAGACATGCAC 60.005 57.895 1.15 0.00 45.18 4.57
104 105 1.005037 GTCGGGACAGACATGCACA 60.005 57.895 0.00 0.00 40.65 4.57
105 106 0.602638 GTCGGGACAGACATGCACAA 60.603 55.000 0.00 0.00 40.65 3.33
106 107 0.107643 TCGGGACAGACATGCACAAA 59.892 50.000 0.00 0.00 0.00 2.83
107 108 0.950836 CGGGACAGACATGCACAAAA 59.049 50.000 0.00 0.00 0.00 2.44
108 109 1.541147 CGGGACAGACATGCACAAAAT 59.459 47.619 0.00 0.00 0.00 1.82
109 110 2.669113 CGGGACAGACATGCACAAAATG 60.669 50.000 0.00 0.00 0.00 2.32
110 111 2.297033 GGGACAGACATGCACAAAATGT 59.703 45.455 0.00 0.00 40.93 2.71
117 118 4.652421 ACATGCACAAAATGTCACTTCA 57.348 36.364 0.00 0.00 32.83 3.02
118 119 5.008619 ACATGCACAAAATGTCACTTCAA 57.991 34.783 0.00 0.00 32.83 2.69
119 120 5.603596 ACATGCACAAAATGTCACTTCAAT 58.396 33.333 0.00 0.00 32.83 2.57
160 161 3.135348 CCTCCAAGAGCATCCTTGTATGA 59.865 47.826 10.99 3.31 41.34 2.15
507 2054 4.767255 CGCTGCCTGGTGAGGACC 62.767 72.222 0.00 0.00 42.93 4.46
547 2095 0.185901 TTCTTTGCTTCTGGCCCTGT 59.814 50.000 0.00 0.00 40.92 4.00
1515 3063 6.540189 CAGGGAACTATATCTGTTGACAAAGG 59.460 42.308 0.00 0.00 40.21 3.11
1520 3068 9.220767 GAACTATATCTGTTGACAAAGGAAAGT 57.779 33.333 0.00 0.00 0.00 2.66
1920 3468 0.692476 TGTGATAACTGCCCAGCTGT 59.308 50.000 13.81 0.00 42.21 4.40
2475 4050 4.665009 ACATATTTGGAGGGCTTAGATGGA 59.335 41.667 0.00 0.00 0.00 3.41
2749 4325 4.377021 TCATGCCTTCGGATACATACAAC 58.623 43.478 0.00 0.00 0.00 3.32
3874 6615 1.974957 TGCAGGCTTAGGTAGTTGTCA 59.025 47.619 0.00 0.00 0.00 3.58
4105 6846 3.890756 TCAACTGCATTCATTCCACACTT 59.109 39.130 0.00 0.00 0.00 3.16
4260 7214 7.510428 AAACAATATGTGATTTCGTGATTGC 57.490 32.000 0.00 0.00 0.00 3.56
4294 7248 8.470040 AGTCACATTTGTGCATATGAAAAATC 57.530 30.769 6.97 0.00 45.25 2.17
4414 7368 5.186996 TCAACTTTCTGTCAAGCATTTCC 57.813 39.130 0.00 0.00 0.00 3.13
4422 7376 4.156556 TCTGTCAAGCATTTCCAAGTATGC 59.843 41.667 0.00 0.00 45.77 3.14
4625 7579 4.098196 GGGAGACTACTGTCCAGTGTATTC 59.902 50.000 10.15 3.10 43.91 1.75
4677 7631 3.440522 GTCCCAAGGTTTAGATTCAGTGC 59.559 47.826 0.00 0.00 0.00 4.40
4770 7726 4.950205 ACCCGAGATAAACCGATATGTT 57.050 40.909 0.00 0.00 0.00 2.71
5289 8267 3.636300 TGCCTTAGTTGTCATTGCTTTGT 59.364 39.130 0.00 0.00 0.00 2.83
5364 8342 7.255486 GCTCTTGTTTTCATGGTACTACCTTTT 60.255 37.037 6.79 0.00 39.58 2.27
5401 8379 4.081476 ACTTGCTCATATTTTTCAAGGGGC 60.081 41.667 0.00 0.00 38.64 5.80
5526 8505 8.698973 TTATCAGTTCACCTAAAATGGTTGAA 57.301 30.769 0.00 0.00 38.45 2.69
5542 8521 2.543777 TGAACTAGACACCCAGTTGC 57.456 50.000 0.00 0.00 35.17 4.17
5543 8522 2.047061 TGAACTAGACACCCAGTTGCT 58.953 47.619 0.00 0.00 35.17 3.91
5544 8523 3.236047 TGAACTAGACACCCAGTTGCTA 58.764 45.455 0.00 0.00 35.17 3.49
5545 8524 3.838317 TGAACTAGACACCCAGTTGCTAT 59.162 43.478 0.00 0.00 35.17 2.97
5546 8525 3.895232 ACTAGACACCCAGTTGCTATG 57.105 47.619 0.00 0.00 0.00 2.23
5547 8526 2.501723 ACTAGACACCCAGTTGCTATGG 59.498 50.000 0.00 0.00 37.58 2.74
5548 8527 1.656587 AGACACCCAGTTGCTATGGA 58.343 50.000 4.25 0.00 40.51 3.41
5549 8528 2.200081 AGACACCCAGTTGCTATGGAT 58.800 47.619 4.25 0.00 40.51 3.41
5550 8529 2.092753 AGACACCCAGTTGCTATGGATG 60.093 50.000 4.25 0.21 40.51 3.51
5552 8531 2.041620 ACACCCAGTTGCTATGGATGTT 59.958 45.455 4.25 0.00 42.22 2.71
5553 8532 3.091545 CACCCAGTTGCTATGGATGTTT 58.908 45.455 4.25 0.00 40.51 2.83
5554 8533 3.511146 CACCCAGTTGCTATGGATGTTTT 59.489 43.478 4.25 0.00 40.51 2.43
5555 8534 4.704540 CACCCAGTTGCTATGGATGTTTTA 59.295 41.667 4.25 0.00 40.51 1.52
5556 8535 4.705023 ACCCAGTTGCTATGGATGTTTTAC 59.295 41.667 4.25 0.00 40.51 2.01
5557 8536 4.097892 CCCAGTTGCTATGGATGTTTTACC 59.902 45.833 4.25 0.00 40.51 2.85
5558 8537 4.704540 CCAGTTGCTATGGATGTTTTACCA 59.295 41.667 0.00 0.00 40.51 3.25
5559 8538 5.163622 CCAGTTGCTATGGATGTTTTACCAG 60.164 44.000 0.00 0.00 40.51 4.00
5560 8539 4.949856 AGTTGCTATGGATGTTTTACCAGG 59.050 41.667 0.00 0.00 39.62 4.45
5561 8540 4.584638 TGCTATGGATGTTTTACCAGGT 57.415 40.909 0.00 0.00 39.62 4.00
5562 8541 4.523083 TGCTATGGATGTTTTACCAGGTC 58.477 43.478 0.00 0.00 39.62 3.85
5563 8542 3.883489 GCTATGGATGTTTTACCAGGTCC 59.117 47.826 0.00 0.00 39.62 4.46
5564 8543 4.385310 GCTATGGATGTTTTACCAGGTCCT 60.385 45.833 0.00 0.00 39.62 3.85
5565 8544 5.163237 GCTATGGATGTTTTACCAGGTCCTA 60.163 44.000 0.00 0.00 39.62 2.94
5566 8545 5.994416 ATGGATGTTTTACCAGGTCCTAT 57.006 39.130 0.00 0.00 39.62 2.57
5567 8546 7.256547 GCTATGGATGTTTTACCAGGTCCTATA 60.257 40.741 0.00 0.00 39.62 1.31
5568 8547 7.648177 ATGGATGTTTTACCAGGTCCTATAT 57.352 36.000 0.00 0.00 39.62 0.86
5569 8548 6.837312 TGGATGTTTTACCAGGTCCTATATG 58.163 40.000 0.00 0.00 0.00 1.78
5570 8549 5.705905 GGATGTTTTACCAGGTCCTATATGC 59.294 44.000 0.00 0.00 0.00 3.14
5957 8936 6.964741 TGTTATGCAATTTGCCAATGTAAG 57.035 33.333 18.27 0.00 44.23 2.34
5958 8937 6.462500 TGTTATGCAATTTGCCAATGTAAGT 58.538 32.000 18.27 0.00 44.23 2.24
5997 8976 8.733092 TCATGAGGATGAGTAAGAAGGATATT 57.267 34.615 0.00 0.00 33.40 1.28
6002 8981 6.015010 AGGATGAGTAAGAAGGATATTGACCG 60.015 42.308 0.00 0.00 0.00 4.79
6014 8993 2.611974 ATTGACCGCGTGATGTTTTC 57.388 45.000 4.92 0.00 0.00 2.29
6108 9087 2.507944 GCATCGCCTCATCCTGGT 59.492 61.111 0.00 0.00 0.00 4.00
6320 9299 3.988379 GTGATTTGCACCTGAGTTTCA 57.012 42.857 0.00 0.00 41.78 2.69
6341 9320 9.394477 GTTTCATGGATAAAAGTTTGACACTAC 57.606 33.333 0.00 0.00 32.94 2.73
6389 9368 7.969536 TGGAGATTTATTGCATTCTACTAGC 57.030 36.000 0.00 0.00 0.00 3.42
6431 9410 4.755123 ACTTTTGAGTTACCTGACCATTCG 59.245 41.667 0.00 0.00 0.00 3.34
6440 9419 2.814336 ACCTGACCATTCGCTTCTTTTC 59.186 45.455 0.00 0.00 0.00 2.29
6518 9497 2.855963 ACCGCACGTTAGTTATCAATCG 59.144 45.455 0.00 0.00 0.00 3.34
6519 9498 2.347292 CCGCACGTTAGTTATCAATCGC 60.347 50.000 0.00 0.00 0.00 4.58
6544 9524 4.380974 GCTTGCTCTTTCTTCAACATTTCG 59.619 41.667 0.00 0.00 0.00 3.46
6546 9526 3.314913 TGCTCTTTCTTCAACATTTCGCA 59.685 39.130 0.00 0.00 0.00 5.10
6568 9548 8.672815 TCGCATGTTCATGTTGATTATTTTAGA 58.327 29.630 13.24 0.00 0.00 2.10
6574 9554 8.788813 GTTCATGTTGATTATTTTAGAACTGCG 58.211 33.333 0.00 0.00 32.42 5.18
6698 9678 1.079474 TGAATCAAGCGGCGCTACA 60.079 52.632 36.59 24.44 38.25 2.74
6751 9731 4.393155 TTCGCTGGCAGCATCCGT 62.393 61.111 35.94 0.00 42.58 4.69
6811 9791 9.613957 GAGAGTTAAGGCAAGTAAAATCTTTTC 57.386 33.333 0.00 0.00 0.00 2.29
6823 9803 5.470845 AAAATCTTTTCGCATCCTAGACG 57.529 39.130 0.00 0.00 0.00 4.18
6830 9810 1.504647 CGCATCCTAGACGTAGCCGA 61.505 60.000 0.00 0.00 37.88 5.54
7002 9982 3.512680 CAGTGTAATGGACGAGAACTCC 58.487 50.000 0.00 0.00 0.00 3.85
7074 10054 2.010145 ATGCGTCGCAAAGTGTAGAT 57.990 45.000 25.66 0.42 43.62 1.98
7118 10106 1.071857 TGAAGGCATGGCAATTGCAAA 59.928 42.857 30.32 18.84 44.36 3.68
7247 11660 1.112315 CCTCGGAGGAGATGGAGGTG 61.112 65.000 19.57 0.00 43.27 4.00
7340 11753 2.024868 CGAATGACACGGCGTTGGA 61.025 57.895 11.19 0.00 0.00 3.53
7382 11795 3.964875 AAAGCACCGGCAACAGCG 61.965 61.111 0.00 0.00 44.61 5.18
7442 11855 7.986889 TGATAAAGCACTGTATCATGTGTGTAT 59.013 33.333 6.46 0.00 32.94 2.29
7470 11884 2.099756 GTGGCATGAAGGAAATACTGGC 59.900 50.000 0.00 0.00 0.00 4.85
7517 11943 7.689812 GCTTGTTTTCTTTTCTTTTCTGAAAGC 59.310 33.333 2.75 0.00 41.63 3.51
7518 11945 8.600449 TTGTTTTCTTTTCTTTTCTGAAAGCA 57.400 26.923 2.75 0.00 41.63 3.91
7538 11965 5.733676 AGCACATTTTCAGTTTTTCTTGGT 58.266 33.333 0.00 0.00 0.00 3.67
7544 11971 5.993748 TTTCAGTTTTTCTTGGTGAAGGT 57.006 34.783 0.00 0.00 35.89 3.50
7563 11990 6.320418 TGAAGGTAAAAGGAAAGGTTTGTCTC 59.680 38.462 0.00 0.00 0.00 3.36
7613 12065 1.663702 CGTGTGACGTGTCCCCTTC 60.664 63.158 0.00 0.00 36.74 3.46
7662 12114 1.484038 TTTGCAACTGAGCCCTTGTT 58.516 45.000 0.00 0.00 0.00 2.83
7666 12118 1.898574 AACTGAGCCCTTGTTGCGG 60.899 57.895 0.00 0.00 0.00 5.69
7672 12124 1.338655 GAGCCCTTGTTGCGGTTTTTA 59.661 47.619 0.00 0.00 0.00 1.52
7686 12138 3.110358 GGTTTTTACACCGCAACAACTC 58.890 45.455 0.00 0.00 0.00 3.01
7724 12176 2.520069 GATCTAGATCCTTCGAGGGCA 58.480 52.381 20.33 0.00 35.59 5.36
7725 12177 2.454336 TCTAGATCCTTCGAGGGCAA 57.546 50.000 9.09 0.00 35.59 4.52
7726 12178 2.964209 TCTAGATCCTTCGAGGGCAAT 58.036 47.619 9.09 0.00 35.59 3.56
7727 12179 3.309296 TCTAGATCCTTCGAGGGCAATT 58.691 45.455 9.09 0.00 35.59 2.32
7728 12180 4.480115 TCTAGATCCTTCGAGGGCAATTA 58.520 43.478 9.09 0.00 35.59 1.40
7729 12181 3.477210 AGATCCTTCGAGGGCAATTAC 57.523 47.619 9.09 0.00 35.59 1.89
7730 12182 2.104963 AGATCCTTCGAGGGCAATTACC 59.895 50.000 9.09 0.00 35.59 2.85
7731 12183 1.580059 TCCTTCGAGGGCAATTACCT 58.420 50.000 9.09 0.70 42.18 3.08
7736 12188 4.164264 AGGGCAATTACCTCCCGT 57.836 55.556 0.00 0.00 44.70 5.28
7737 12189 1.607612 AGGGCAATTACCTCCCGTG 59.392 57.895 0.00 0.00 44.70 4.94
7738 12190 1.205460 AGGGCAATTACCTCCCGTGT 61.205 55.000 0.00 0.00 44.70 4.49
7739 12191 0.323087 GGGCAATTACCTCCCGTGTT 60.323 55.000 0.00 0.00 0.00 3.32
7740 12192 1.065272 GGGCAATTACCTCCCGTGTTA 60.065 52.381 0.00 0.00 0.00 2.41
7741 12193 2.011947 GGCAATTACCTCCCGTGTTAC 58.988 52.381 0.00 0.00 0.00 2.50
7742 12194 2.355412 GGCAATTACCTCCCGTGTTACT 60.355 50.000 0.00 0.00 0.00 2.24
7743 12195 2.934553 GCAATTACCTCCCGTGTTACTC 59.065 50.000 0.00 0.00 0.00 2.59
7744 12196 3.528532 CAATTACCTCCCGTGTTACTCC 58.471 50.000 0.00 0.00 0.00 3.85
7745 12197 2.610438 TTACCTCCCGTGTTACTCCT 57.390 50.000 0.00 0.00 0.00 3.69
7746 12198 3.737559 TTACCTCCCGTGTTACTCCTA 57.262 47.619 0.00 0.00 0.00 2.94
7747 12199 2.610438 ACCTCCCGTGTTACTCCTAA 57.390 50.000 0.00 0.00 0.00 2.69
7748 12200 2.454538 ACCTCCCGTGTTACTCCTAAG 58.545 52.381 0.00 0.00 0.00 2.18
7749 12201 1.136500 CCTCCCGTGTTACTCCTAAGC 59.864 57.143 0.00 0.00 0.00 3.09
7750 12202 2.100989 CTCCCGTGTTACTCCTAAGCT 58.899 52.381 0.00 0.00 0.00 3.74
7751 12203 2.496470 CTCCCGTGTTACTCCTAAGCTT 59.504 50.000 3.48 3.48 0.00 3.74
7752 12204 2.494870 TCCCGTGTTACTCCTAAGCTTC 59.505 50.000 0.00 0.00 0.00 3.86
7753 12205 2.418334 CCCGTGTTACTCCTAAGCTTCC 60.418 54.545 0.00 0.00 0.00 3.46
7754 12206 2.527100 CGTGTTACTCCTAAGCTTCCG 58.473 52.381 0.00 0.00 0.00 4.30
7755 12207 2.094854 CGTGTTACTCCTAAGCTTCCGT 60.095 50.000 0.00 0.00 0.00 4.69
7756 12208 3.613432 CGTGTTACTCCTAAGCTTCCGTT 60.613 47.826 0.00 0.00 0.00 4.44
7757 12209 3.925299 GTGTTACTCCTAAGCTTCCGTTC 59.075 47.826 0.00 0.00 0.00 3.95
7758 12210 3.830755 TGTTACTCCTAAGCTTCCGTTCT 59.169 43.478 0.00 0.00 0.00 3.01
7759 12211 4.282703 TGTTACTCCTAAGCTTCCGTTCTT 59.717 41.667 0.00 0.00 0.00 2.52
7760 12212 3.596310 ACTCCTAAGCTTCCGTTCTTC 57.404 47.619 0.00 0.00 0.00 2.87
7761 12213 2.234168 ACTCCTAAGCTTCCGTTCTTCC 59.766 50.000 0.00 0.00 0.00 3.46
7762 12214 2.498078 CTCCTAAGCTTCCGTTCTTCCT 59.502 50.000 0.00 0.00 0.00 3.36
7763 12215 3.700038 CTCCTAAGCTTCCGTTCTTCCTA 59.300 47.826 0.00 0.00 0.00 2.94
7764 12216 3.446516 TCCTAAGCTTCCGTTCTTCCTAC 59.553 47.826 0.00 0.00 0.00 3.18
7765 12217 3.194968 CCTAAGCTTCCGTTCTTCCTACA 59.805 47.826 0.00 0.00 0.00 2.74
7766 12218 3.983044 AAGCTTCCGTTCTTCCTACAT 57.017 42.857 0.00 0.00 0.00 2.29
7767 12219 3.983044 AGCTTCCGTTCTTCCTACATT 57.017 42.857 0.00 0.00 0.00 2.71
7768 12220 5.416271 AAGCTTCCGTTCTTCCTACATTA 57.584 39.130 0.00 0.00 0.00 1.90
7769 12221 5.615925 AGCTTCCGTTCTTCCTACATTAT 57.384 39.130 0.00 0.00 0.00 1.28
7770 12222 5.990668 AGCTTCCGTTCTTCCTACATTATT 58.009 37.500 0.00 0.00 0.00 1.40
7771 12223 6.415573 AGCTTCCGTTCTTCCTACATTATTT 58.584 36.000 0.00 0.00 0.00 1.40
7772 12224 7.562135 AGCTTCCGTTCTTCCTACATTATTTA 58.438 34.615 0.00 0.00 0.00 1.40
7773 12225 8.211629 AGCTTCCGTTCTTCCTACATTATTTAT 58.788 33.333 0.00 0.00 0.00 1.40
7774 12226 8.283291 GCTTCCGTTCTTCCTACATTATTTATG 58.717 37.037 0.00 0.00 40.26 1.90
7776 12228 9.675464 TTCCGTTCTTCCTACATTATTTATGTT 57.325 29.630 0.00 0.00 45.19 2.71
7777 12229 9.104965 TCCGTTCTTCCTACATTATTTATGTTG 57.895 33.333 0.00 0.00 45.19 3.33
7778 12230 7.855904 CCGTTCTTCCTACATTATTTATGTTGC 59.144 37.037 0.00 0.00 45.19 4.17
7779 12231 8.394877 CGTTCTTCCTACATTATTTATGTTGCA 58.605 33.333 0.00 0.00 45.19 4.08
7791 12243 6.966435 ATTTATGTTGCAAAAATCCTTCCG 57.034 33.333 0.00 0.00 0.00 4.30
7792 12244 2.147436 TGTTGCAAAAATCCTTCCGC 57.853 45.000 0.00 0.00 0.00 5.54
7793 12245 1.410517 TGTTGCAAAAATCCTTCCGCA 59.589 42.857 0.00 0.00 0.00 5.69
7794 12246 2.159043 TGTTGCAAAAATCCTTCCGCAA 60.159 40.909 0.00 0.00 37.05 4.85
7795 12247 2.147436 TGCAAAAATCCTTCCGCAAC 57.853 45.000 0.00 0.00 0.00 4.17
7796 12248 1.410517 TGCAAAAATCCTTCCGCAACA 59.589 42.857 0.00 0.00 0.00 3.33
7797 12249 2.036992 TGCAAAAATCCTTCCGCAACAT 59.963 40.909 0.00 0.00 0.00 2.71
7798 12250 2.667969 GCAAAAATCCTTCCGCAACATC 59.332 45.455 0.00 0.00 0.00 3.06
7799 12251 3.860378 GCAAAAATCCTTCCGCAACATCA 60.860 43.478 0.00 0.00 0.00 3.07
7800 12252 4.497300 CAAAAATCCTTCCGCAACATCAT 58.503 39.130 0.00 0.00 0.00 2.45
7801 12253 4.376340 AAAATCCTTCCGCAACATCATC 57.624 40.909 0.00 0.00 0.00 2.92
7802 12254 1.972872 ATCCTTCCGCAACATCATCC 58.027 50.000 0.00 0.00 0.00 3.51
7803 12255 0.617935 TCCTTCCGCAACATCATCCA 59.382 50.000 0.00 0.00 0.00 3.41
7804 12256 1.212688 TCCTTCCGCAACATCATCCAT 59.787 47.619 0.00 0.00 0.00 3.41
7816 12268 4.824289 ACATCATCCATGTTGAAAAAGGC 58.176 39.130 4.90 0.00 43.89 4.35
7819 12271 3.191162 TCATCCATGTTGAAAAAGGCGAG 59.809 43.478 0.00 0.00 0.00 5.03
7820 12272 1.269448 TCCATGTTGAAAAAGGCGAGC 59.731 47.619 0.00 0.00 0.00 5.03
7824 12276 1.202245 TGTTGAAAAAGGCGAGCACAC 60.202 47.619 0.00 0.00 0.00 3.82
7838 12290 3.510719 GAGCACACAAAAAGAACTGCAA 58.489 40.909 0.00 0.00 0.00 4.08
7852 12304 5.343249 AGAACTGCAACACTTGAATGTTTC 58.657 37.500 0.00 0.00 40.89 2.78
7872 12367 7.669427 TGTTTCTTTGTTGCAATAATGAGGAT 58.331 30.769 19.10 0.00 0.00 3.24
7880 12375 5.136068 TGCAATAATGAGGATGGGGTTAA 57.864 39.130 0.00 0.00 0.00 2.01
7884 12379 3.953542 AATGAGGATGGGGTTAAGACC 57.046 47.619 0.00 0.00 45.75 3.85
7896 12391 0.397564 TTAAGACCGGTGGTTGGACC 59.602 55.000 14.63 0.00 35.25 4.46
7915 12410 2.093973 ACCAGATCTAACGGCTGTTGAG 60.094 50.000 21.37 13.48 39.12 3.02
7917 12412 2.166459 CAGATCTAACGGCTGTTGAGGA 59.834 50.000 21.37 15.35 39.12 3.71
7920 12415 0.608640 CTAACGGCTGTTGAGGAGGT 59.391 55.000 21.37 0.00 39.12 3.85
7921 12416 0.320374 TAACGGCTGTTGAGGAGGTG 59.680 55.000 21.37 0.00 39.12 4.00
7922 12417 1.696097 AACGGCTGTTGAGGAGGTGT 61.696 55.000 10.90 0.00 36.81 4.16
7923 12418 0.830444 ACGGCTGTTGAGGAGGTGTA 60.830 55.000 0.00 0.00 0.00 2.90
7924 12419 0.537188 CGGCTGTTGAGGAGGTGTAT 59.463 55.000 0.00 0.00 0.00 2.29
7925 12420 1.066143 CGGCTGTTGAGGAGGTGTATT 60.066 52.381 0.00 0.00 0.00 1.89
7967 12462 0.036010 ATGCGTAGTTGGCTTCAGCT 60.036 50.000 0.00 0.00 41.70 4.24
7970 12465 0.037326 CGTAGTTGGCTTCAGCTGGA 60.037 55.000 15.13 3.47 41.70 3.86
7972 12467 2.504367 GTAGTTGGCTTCAGCTGGAAA 58.496 47.619 15.13 0.09 41.70 3.13
7973 12468 2.299326 AGTTGGCTTCAGCTGGAAAT 57.701 45.000 15.13 0.00 41.70 2.17
7974 12469 2.165998 AGTTGGCTTCAGCTGGAAATC 58.834 47.619 15.13 0.00 41.70 2.17
7975 12470 1.888512 GTTGGCTTCAGCTGGAAATCA 59.111 47.619 15.13 0.41 41.70 2.57
7978 12474 1.200948 GGCTTCAGCTGGAAATCACAC 59.799 52.381 15.13 0.00 41.70 3.82
8001 12497 3.822192 CGTCCGCCGTCTCATCCA 61.822 66.667 0.00 0.00 0.00 3.41
8006 12502 1.141665 CGCCGTCTCATCCATGTGA 59.858 57.895 0.00 0.00 0.00 3.58
8016 12512 2.852495 ATCCATGTGACGCGTGTCCC 62.852 60.000 25.28 15.59 44.86 4.46
8017 12513 3.118454 CATGTGACGCGTGTCCCC 61.118 66.667 25.28 16.26 44.86 4.81
8018 12514 4.735132 ATGTGACGCGTGTCCCCG 62.735 66.667 25.28 1.07 44.86 5.73
8068 12564 0.597568 TTGCAATCGAGCCCTTGTTG 59.402 50.000 0.00 0.00 0.00 3.33
8069 12565 1.153958 GCAATCGAGCCCTTGTTGC 60.154 57.895 2.25 2.25 38.43 4.17
8070 12566 1.865788 GCAATCGAGCCCTTGTTGCA 61.866 55.000 11.65 0.00 43.33 4.08
8071 12567 0.169672 CAATCGAGCCCTTGTTGCAG 59.830 55.000 0.00 0.00 0.00 4.41
8085 12582 1.634702 TTGCAGTTTTTCACCGCAAC 58.365 45.000 0.00 0.00 37.64 4.17
8086 12583 0.528017 TGCAGTTTTTCACCGCAACA 59.472 45.000 0.00 0.00 0.00 3.33
8117 12614 3.126001 TGCAGGATTTGGATCGGTATC 57.874 47.619 0.00 0.00 32.84 2.24
8126 12623 0.538977 GGATCGGTATCCCTCGGTGA 60.539 60.000 0.00 0.00 45.37 4.02
8151 12648 7.824672 AGTCATTTTGTCAAAATCCTCTCATC 58.175 34.615 18.62 5.74 38.97 2.92
8152 12649 7.449395 AGTCATTTTGTCAAAATCCTCTCATCA 59.551 33.333 18.62 0.00 38.97 3.07
8155 12652 6.564709 TTTGTCAAAATCCTCTCATCACAG 57.435 37.500 0.00 0.00 0.00 3.66
8156 12653 5.488262 TGTCAAAATCCTCTCATCACAGA 57.512 39.130 0.00 0.00 0.00 3.41
8164 12661 5.551305 TCCTCTCATCACAGAAAAGTTGA 57.449 39.130 0.00 0.00 0.00 3.18
8200 12697 8.695456 ACAACTTTCATTGACCTTTGTCTTATT 58.305 29.630 0.00 0.00 42.28 1.40
8213 12710 6.868339 CCTTTGTCTTATTTTCAACATGGACC 59.132 38.462 0.00 0.00 0.00 4.46
8215 12712 4.457603 TGTCTTATTTTCAACATGGACCCG 59.542 41.667 0.00 0.00 0.00 5.28
8226 12723 1.493854 ATGGACCCGTAAACTGCCCA 61.494 55.000 0.00 0.00 0.00 5.36
8231 12728 0.610785 CCCGTAAACTGCCCATGGTT 60.611 55.000 11.73 0.00 0.00 3.67
8234 12731 0.808755 GTAAACTGCCCATGGTTCGG 59.191 55.000 11.73 9.62 0.00 4.30
8236 12733 0.893727 AAACTGCCCATGGTTCGGAC 60.894 55.000 11.73 0.00 0.00 4.79
8237 12734 2.819595 CTGCCCATGGTTCGGACG 60.820 66.667 11.73 0.00 0.00 4.79
8240 12737 2.124736 CCCATGGTTCGGACGCAT 60.125 61.111 11.73 0.00 0.00 4.73
8241 12738 1.748879 CCCATGGTTCGGACGCATT 60.749 57.895 11.73 0.00 0.00 3.56
8242 12739 1.312371 CCCATGGTTCGGACGCATTT 61.312 55.000 11.73 0.00 0.00 2.32
8243 12740 0.179166 CCATGGTTCGGACGCATTTG 60.179 55.000 2.57 0.00 0.00 2.32
8244 12741 0.179166 CATGGTTCGGACGCATTTGG 60.179 55.000 0.00 0.00 0.00 3.28
8245 12742 0.608035 ATGGTTCGGACGCATTTGGT 60.608 50.000 0.00 0.00 0.00 3.67
8246 12743 0.035036 TGGTTCGGACGCATTTGGTA 59.965 50.000 0.00 0.00 0.00 3.25
8247 12744 0.445043 GGTTCGGACGCATTTGGTAC 59.555 55.000 0.00 0.00 0.00 3.34
8248 12745 0.445043 GTTCGGACGCATTTGGTACC 59.555 55.000 4.43 4.43 0.00 3.34
8249 12746 0.674269 TTCGGACGCATTTGGTACCC 60.674 55.000 10.07 0.00 0.00 3.69
8250 12747 1.078708 CGGACGCATTTGGTACCCT 60.079 57.895 10.07 0.00 0.00 4.34
8251 12748 0.176219 CGGACGCATTTGGTACCCTA 59.824 55.000 10.07 0.00 0.00 3.53
8252 12749 1.202604 CGGACGCATTTGGTACCCTAT 60.203 52.381 10.07 0.00 0.00 2.57
8253 12750 2.490991 GGACGCATTTGGTACCCTATC 58.509 52.381 10.07 0.00 0.00 2.08
8254 12751 2.158871 GGACGCATTTGGTACCCTATCA 60.159 50.000 10.07 0.00 0.00 2.15
8255 12752 3.131396 GACGCATTTGGTACCCTATCAG 58.869 50.000 10.07 0.00 0.00 2.90
8256 12753 2.504175 ACGCATTTGGTACCCTATCAGT 59.496 45.455 10.07 0.19 0.00 3.41
8257 12754 3.131396 CGCATTTGGTACCCTATCAGTC 58.869 50.000 10.07 0.00 0.00 3.51
8258 12755 3.477530 GCATTTGGTACCCTATCAGTCC 58.522 50.000 10.07 0.00 0.00 3.85
8259 12756 3.118038 GCATTTGGTACCCTATCAGTCCA 60.118 47.826 10.07 0.00 0.00 4.02
8260 12757 4.446311 GCATTTGGTACCCTATCAGTCCAT 60.446 45.833 10.07 0.00 0.00 3.41
8261 12758 4.771114 TTTGGTACCCTATCAGTCCATG 57.229 45.455 10.07 0.00 0.00 3.66
8262 12759 3.699025 TGGTACCCTATCAGTCCATGA 57.301 47.619 10.07 0.00 43.70 3.07
8263 12760 4.002256 TGGTACCCTATCAGTCCATGAA 57.998 45.455 10.07 0.00 42.53 2.57
8264 12761 3.709653 TGGTACCCTATCAGTCCATGAAC 59.290 47.826 10.07 0.00 42.53 3.18
8265 12762 3.071167 GGTACCCTATCAGTCCATGAACC 59.929 52.174 0.00 0.00 42.53 3.62
8266 12763 1.762957 ACCCTATCAGTCCATGAACCG 59.237 52.381 0.00 0.00 42.53 4.44
8267 12764 2.039418 CCCTATCAGTCCATGAACCGA 58.961 52.381 0.00 0.00 42.53 4.69
8268 12765 2.224066 CCCTATCAGTCCATGAACCGAC 60.224 54.545 0.00 0.00 42.53 4.79
8269 12766 2.430694 CCTATCAGTCCATGAACCGACA 59.569 50.000 0.00 0.00 42.53 4.35
8270 12767 3.070159 CCTATCAGTCCATGAACCGACAT 59.930 47.826 0.00 0.00 42.53 3.06
8271 12768 2.385013 TCAGTCCATGAACCGACATG 57.615 50.000 0.00 0.00 44.78 3.21
8279 12776 4.439305 CATGAACCGACATGGACATTTT 57.561 40.909 0.00 0.00 42.45 1.82
8280 12777 3.913548 TGAACCGACATGGACATTTTG 57.086 42.857 0.00 0.00 42.00 2.44
8281 12778 3.481453 TGAACCGACATGGACATTTTGA 58.519 40.909 0.00 0.00 42.00 2.69
8319 12816 3.041940 CGGTTCAGGCGTTCGCTT 61.042 61.111 16.40 6.57 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.402528 CGTTGACCATGGCCGGGA 62.403 66.667 19.39 0.00 0.00 5.14
12 13 4.715523 ACGTTGACCATGGCCGGG 62.716 66.667 13.04 11.54 0.00 5.73
13 14 3.430862 CACGTTGACCATGGCCGG 61.431 66.667 13.04 0.00 0.00 6.13
14 15 4.101790 GCACGTTGACCATGGCCG 62.102 66.667 13.04 11.73 0.00 6.13
15 16 2.983030 TGCACGTTGACCATGGCC 60.983 61.111 13.04 0.00 0.00 5.36
16 17 2.255252 GTGCACGTTGACCATGGC 59.745 61.111 13.04 5.35 0.00 4.40
17 18 2.953821 GGTGCACGTTGACCATGG 59.046 61.111 11.19 11.19 31.97 3.66
18 19 2.555782 CGGTGCACGTTGACCATG 59.444 61.111 11.45 0.00 37.93 3.66
19 20 2.668212 CCGGTGCACGTTGACCAT 60.668 61.111 11.45 0.00 42.24 3.55
25 26 4.980805 ATGACGCCGGTGCACGTT 62.981 61.111 16.69 0.00 43.71 3.99
26 27 4.980805 AATGACGCCGGTGCACGT 62.981 61.111 16.69 10.13 46.91 4.49
27 28 4.147322 GAATGACGCCGGTGCACG 62.147 66.667 16.69 6.24 43.80 5.34
28 29 3.799755 GGAATGACGCCGGTGCAC 61.800 66.667 16.69 8.80 37.32 4.57
29 30 3.950794 GAGGAATGACGCCGGTGCA 62.951 63.158 16.69 14.64 37.32 4.57
30 31 3.195698 GAGGAATGACGCCGGTGC 61.196 66.667 16.69 8.77 0.00 5.01
31 32 2.885644 CGAGGAATGACGCCGGTG 60.886 66.667 14.93 14.93 0.00 4.94
37 38 4.847516 TCGCGGCGAGGAATGACG 62.848 66.667 22.69 1.18 41.93 4.35
53 54 1.226831 GTAGCGTGCAGGAGAGCTC 60.227 63.158 11.29 5.27 40.73 4.09
54 55 2.888863 GTAGCGTGCAGGAGAGCT 59.111 61.111 11.29 8.08 43.07 4.09
55 56 2.580867 CGTAGCGTGCAGGAGAGC 60.581 66.667 11.29 0.05 0.00 4.09
56 57 2.878429 ACGTAGCGTGCAGGAGAG 59.122 61.111 11.29 0.49 39.18 3.20
78 79 1.336517 TGTCTGTCCCGACATTTCGTC 60.337 52.381 0.00 0.00 44.28 4.20
79 80 0.677288 TGTCTGTCCCGACATTTCGT 59.323 50.000 0.00 0.00 44.28 3.85
80 81 3.507597 TGTCTGTCCCGACATTTCG 57.492 52.632 0.00 0.00 45.44 3.46
85 86 1.005037 GTGCATGTCTGTCCCGACA 60.005 57.895 0.00 0.00 46.82 4.35
86 87 0.602638 TTGTGCATGTCTGTCCCGAC 60.603 55.000 0.00 0.00 34.52 4.79
87 88 0.107643 TTTGTGCATGTCTGTCCCGA 59.892 50.000 0.00 0.00 0.00 5.14
88 89 0.950836 TTTTGTGCATGTCTGTCCCG 59.049 50.000 0.00 0.00 0.00 5.14
89 90 2.297033 ACATTTTGTGCATGTCTGTCCC 59.703 45.455 0.00 0.00 27.99 4.46
90 91 3.568538 GACATTTTGTGCATGTCTGTCC 58.431 45.455 9.61 0.00 44.91 4.02
96 97 4.652421 TGAAGTGACATTTTGTGCATGT 57.348 36.364 0.00 0.00 37.58 3.21
97 98 6.533819 AATTGAAGTGACATTTTGTGCATG 57.466 33.333 0.00 0.00 0.00 4.06
98 99 7.556733 AAAATTGAAGTGACATTTTGTGCAT 57.443 28.000 0.00 0.00 0.00 3.96
99 100 6.981762 AAAATTGAAGTGACATTTTGTGCA 57.018 29.167 0.00 0.00 0.00 4.57
160 161 0.532862 CTGAGTTTGTCTGTGGCCGT 60.533 55.000 0.00 0.00 0.00 5.68
794 2342 1.137872 TGGCATGTCCAAAACAACACC 59.862 47.619 6.42 0.00 43.21 4.16
1920 3468 1.609555 GGTTGTAAATGCCAACACCGA 59.390 47.619 5.73 0.00 43.10 4.69
2453 4027 5.246981 TCCATCTAAGCCCTCCAAATATG 57.753 43.478 0.00 0.00 0.00 1.78
2475 4050 8.831738 AGGGGGCAAAACACTATTATTATTTTT 58.168 29.630 0.00 0.00 0.00 1.94
2552 4127 2.687700 AATCAGTGGCACAGCTAGAG 57.312 50.000 21.41 0.54 41.80 2.43
2607 4183 0.963225 TATCCAATTCGATCGGCCGA 59.037 50.000 33.12 33.12 36.70 5.54
2612 4188 6.142817 GGTCCAATTTTATCCAATTCGATCG 58.857 40.000 9.36 9.36 0.00 3.69
3086 5623 6.148480 GCATGTGATCTAGTCAATAATCCCAC 59.852 42.308 0.00 0.00 38.90 4.61
4226 7180 9.573133 GAAATCACATATTGTTTTCCTTCGATT 57.427 29.630 0.00 0.00 37.72 3.34
4227 7181 7.910162 CGAAATCACATATTGTTTTCCTTCGAT 59.090 33.333 0.00 0.00 39.38 3.59
4228 7182 7.094975 ACGAAATCACATATTGTTTTCCTTCGA 60.095 33.333 0.00 0.00 39.38 3.71
4229 7183 7.007367 CACGAAATCACATATTGTTTTCCTTCG 59.993 37.037 0.00 0.00 39.38 3.79
4230 7184 8.020819 TCACGAAATCACATATTGTTTTCCTTC 58.979 33.333 0.00 0.00 39.38 3.46
4231 7185 7.881142 TCACGAAATCACATATTGTTTTCCTT 58.119 30.769 0.00 3.07 39.38 3.36
4232 7186 7.447374 TCACGAAATCACATATTGTTTTCCT 57.553 32.000 0.00 3.77 39.38 3.36
4233 7187 8.586273 CAATCACGAAATCACATATTGTTTTCC 58.414 33.333 0.00 0.00 39.38 3.13
4234 7188 8.103924 GCAATCACGAAATCACATATTGTTTTC 58.896 33.333 0.00 9.25 39.25 2.29
4235 7189 7.201342 CGCAATCACGAAATCACATATTGTTTT 60.201 33.333 0.00 0.00 34.06 2.43
4236 7190 6.251163 CGCAATCACGAAATCACATATTGTTT 59.749 34.615 0.00 0.00 34.06 2.83
4237 7191 5.738693 CGCAATCACGAAATCACATATTGTT 59.261 36.000 0.00 0.00 34.06 2.83
4238 7192 5.163764 ACGCAATCACGAAATCACATATTGT 60.164 36.000 0.00 0.00 36.70 2.71
4260 7214 0.439985 CAAATGTGACTCTCCGCACG 59.560 55.000 0.00 0.00 37.83 5.34
4294 7248 9.454585 CACCTTGCATGTTAATATATTCTTGTG 57.545 33.333 0.00 0.00 0.00 3.33
4414 7368 1.757118 TCCCTCTCTTCCGCATACTTG 59.243 52.381 0.00 0.00 0.00 3.16
4422 7376 3.891977 TGACTTGATATCCCTCTCTTCCG 59.108 47.826 0.00 0.00 0.00 4.30
4549 7503 3.740452 CGCAATCAGACCACTCAGATGAT 60.740 47.826 0.00 0.00 32.11 2.45
4625 7579 2.919859 CGCGATCATTGCTATCTACCAG 59.080 50.000 0.00 0.00 0.00 4.00
4677 7631 2.086869 AGCGTTGGAATGAATCACCTG 58.913 47.619 0.00 0.00 0.00 4.00
4770 7726 2.875933 CGTGTTTTCTTAGCTGTTGGGA 59.124 45.455 0.00 0.00 0.00 4.37
5289 8267 5.596361 TCTTTCTGCAACATAAAAAGGTCCA 59.404 36.000 0.00 0.00 0.00 4.02
5526 8505 2.501723 CCATAGCAACTGGGTGTCTAGT 59.498 50.000 0.00 0.00 36.19 2.57
5542 8521 5.373812 AGGACCTGGTAAAACATCCATAG 57.626 43.478 0.00 0.00 33.01 2.23
5543 8522 8.602424 CATATAGGACCTGGTAAAACATCCATA 58.398 37.037 3.53 0.00 33.01 2.74
5544 8523 5.994416 ATAGGACCTGGTAAAACATCCAT 57.006 39.130 3.53 0.00 33.01 3.41
5545 8524 6.690460 GCATATAGGACCTGGTAAAACATCCA 60.690 42.308 3.53 0.00 0.00 3.41
5546 8525 5.705905 GCATATAGGACCTGGTAAAACATCC 59.294 44.000 3.53 0.00 0.00 3.51
5547 8526 6.803154 GCATATAGGACCTGGTAAAACATC 57.197 41.667 3.53 0.00 0.00 3.06
5957 8936 9.227777 TCATCCTCATGATATTCATCAATGAAC 57.772 33.333 7.55 0.00 44.27 3.18
5958 8937 9.449719 CTCATCCTCATGATATTCATCAATGAA 57.550 33.333 7.82 7.82 44.27 2.57
5974 8953 8.592809 GTCAATATCCTTCTTACTCATCCTCAT 58.407 37.037 0.00 0.00 0.00 2.90
5997 8976 1.518325 ATGAAAACATCACGCGGTCA 58.482 45.000 12.47 0.79 41.93 4.02
6002 8981 4.558470 CCACAACATATGAAAACATCACGC 59.442 41.667 10.38 0.00 41.93 5.34
6014 8993 5.887598 TCCCAAGATTTCTCCACAACATATG 59.112 40.000 0.00 0.00 0.00 1.78
6108 9087 4.455533 CACAAAGATGCTTAGTGTGGCTAA 59.544 41.667 0.00 0.00 36.72 3.09
6320 9299 7.739498 AACGTAGTGTCAAACTTTTATCCAT 57.261 32.000 0.00 0.00 45.00 3.41
6341 9320 2.683867 AGGTAGACTCGATGAGGAAACG 59.316 50.000 0.00 0.00 33.35 3.60
6389 9368 9.299963 TCAAAAGTAAACATCACTTCATTGTTG 57.700 29.630 0.00 0.00 35.19 3.33
6395 9374 8.617809 GGTAACTCAAAAGTAAACATCACTTCA 58.382 33.333 0.00 0.00 35.19 3.02
6431 9410 6.729187 ACAACATCACTGTAAGAAAAGAAGC 58.271 36.000 0.00 0.00 37.43 3.86
6440 9419 6.093909 TGCCATATGAACAACATCACTGTAAG 59.906 38.462 3.65 0.00 40.07 2.34
6518 9497 0.593128 TTGAAGAAAGAGCAAGCCGC 59.407 50.000 0.00 0.00 42.91 6.53
6519 9498 1.603802 TGTTGAAGAAAGAGCAAGCCG 59.396 47.619 0.00 0.00 0.00 5.52
6568 9548 6.740905 CACGTTCAAATGTAATTATCGCAGTT 59.259 34.615 0.00 0.00 33.67 3.16
6574 9554 9.767684 TGATTGTCACGTTCAAATGTAATTATC 57.232 29.630 6.96 0.00 33.67 1.75
6586 9566 1.414550 TCCACCTGATTGTCACGTTCA 59.585 47.619 0.00 0.00 0.00 3.18
6698 9678 4.531357 ACTGATTGTGATGGGATGGATT 57.469 40.909 0.00 0.00 0.00 3.01
6751 9731 1.655484 GTCATCATGCCACGTGATCA 58.345 50.000 19.30 14.80 34.21 2.92
6811 9791 1.082038 CGGCTACGTCTAGGATGCG 60.082 63.158 0.00 0.00 34.81 4.73
6823 9803 1.469308 CTCCGTCCAGATATCGGCTAC 59.531 57.143 8.27 3.53 43.35 3.58
6830 9810 4.533815 TCAGTACAACTCCGTCCAGATAT 58.466 43.478 0.00 0.00 0.00 1.63
6877 9857 1.398692 TCTGGCCCAAAGTTCACAAC 58.601 50.000 0.00 0.00 0.00 3.32
6966 9946 1.417517 ACACTGCCAGATGTGAGAACA 59.582 47.619 0.00 0.00 37.59 3.18
7002 9982 2.227194 ACCTTGTTTGGGTTAGCGAAG 58.773 47.619 0.00 0.00 32.46 3.79
7074 10054 1.634960 TATCATATCGGGCAACGGGA 58.365 50.000 0.11 0.00 44.45 5.14
7118 10106 3.067180 CCAGAACAAACAGACAACAGCAT 59.933 43.478 0.00 0.00 0.00 3.79
7180 11593 3.084039 ACAACCTGCATCGTTCATCATT 58.916 40.909 0.00 0.00 0.00 2.57
7247 11660 4.459089 GAGTGGGGAGGCAGCGTC 62.459 72.222 6.55 6.55 0.00 5.19
7340 11753 3.181461 CCTGCCCATCGTTCTCTTATTCT 60.181 47.826 0.00 0.00 0.00 2.40
7382 11795 2.363147 ACTGACCCCTCTCCGCTC 60.363 66.667 0.00 0.00 0.00 5.03
7442 11855 1.228521 CCTTCATGCCACACCACCA 60.229 57.895 0.00 0.00 0.00 4.17
7470 11884 5.864986 AGCCTGACGTGATTTTTATTTACG 58.135 37.500 0.00 0.00 40.30 3.18
7517 11943 7.201548 CCTTCACCAAGAAAAACTGAAAATGTG 60.202 37.037 0.00 0.00 35.40 3.21
7518 11945 6.818142 CCTTCACCAAGAAAAACTGAAAATGT 59.182 34.615 0.00 0.00 35.40 2.71
7538 11965 6.192044 AGACAAACCTTTCCTTTTACCTTCA 58.808 36.000 0.00 0.00 0.00 3.02
7544 11971 5.596772 CCCAAGAGACAAACCTTTCCTTTTA 59.403 40.000 0.00 0.00 0.00 1.52
7584 12036 4.980805 TCACACGGACAAGGCGGC 62.981 66.667 0.00 0.00 0.00 6.53
7640 12092 1.410153 CAAGGGCTCAGTTGCAAAACT 59.590 47.619 0.00 0.00 34.04 2.66
7666 12118 2.779471 CGAGTTGTTGCGGTGTAAAAAC 59.221 45.455 0.00 0.00 0.00 2.43
7672 12124 1.144969 CATACGAGTTGTTGCGGTGT 58.855 50.000 0.00 0.00 0.00 4.16
7686 12138 5.713792 AGATCCAGATCCTACAACATACG 57.286 43.478 4.01 0.00 38.58 3.06
7718 12170 0.463833 CACGGGAGGTAATTGCCCTC 60.464 60.000 9.20 12.43 46.49 4.30
7719 12171 1.205460 ACACGGGAGGTAATTGCCCT 61.205 55.000 9.20 3.48 39.79 5.19
7720 12172 0.323087 AACACGGGAGGTAATTGCCC 60.323 55.000 9.20 3.42 38.53 5.36
7721 12173 2.011947 GTAACACGGGAGGTAATTGCC 58.988 52.381 4.07 4.07 0.00 4.52
7722 12174 2.934553 GAGTAACACGGGAGGTAATTGC 59.065 50.000 0.00 0.00 0.00 3.56
7723 12175 3.197116 AGGAGTAACACGGGAGGTAATTG 59.803 47.826 0.00 0.00 0.00 2.32
7724 12176 3.447950 AGGAGTAACACGGGAGGTAATT 58.552 45.455 0.00 0.00 0.00 1.40
7725 12177 3.111741 AGGAGTAACACGGGAGGTAAT 57.888 47.619 0.00 0.00 0.00 1.89
7726 12178 2.610438 AGGAGTAACACGGGAGGTAA 57.390 50.000 0.00 0.00 0.00 2.85
7727 12179 3.624777 CTTAGGAGTAACACGGGAGGTA 58.375 50.000 0.00 0.00 0.00 3.08
7728 12180 2.454538 CTTAGGAGTAACACGGGAGGT 58.545 52.381 0.00 0.00 0.00 3.85
7729 12181 1.136500 GCTTAGGAGTAACACGGGAGG 59.864 57.143 0.00 0.00 0.00 4.30
7730 12182 2.100989 AGCTTAGGAGTAACACGGGAG 58.899 52.381 0.00 0.00 0.00 4.30
7731 12183 2.226962 AGCTTAGGAGTAACACGGGA 57.773 50.000 0.00 0.00 0.00 5.14
7732 12184 2.418334 GGAAGCTTAGGAGTAACACGGG 60.418 54.545 0.00 0.00 0.00 5.28
7733 12185 2.734492 CGGAAGCTTAGGAGTAACACGG 60.734 54.545 0.00 0.00 0.00 4.94
7734 12186 2.094854 ACGGAAGCTTAGGAGTAACACG 60.095 50.000 0.00 0.00 0.00 4.49
7735 12187 3.589495 ACGGAAGCTTAGGAGTAACAC 57.411 47.619 0.00 0.00 0.00 3.32
7736 12188 3.830755 AGAACGGAAGCTTAGGAGTAACA 59.169 43.478 0.00 0.00 0.00 2.41
7737 12189 4.453177 AGAACGGAAGCTTAGGAGTAAC 57.547 45.455 0.00 0.00 0.00 2.50
7738 12190 4.081807 GGAAGAACGGAAGCTTAGGAGTAA 60.082 45.833 0.00 0.00 0.00 2.24
7739 12191 3.446516 GGAAGAACGGAAGCTTAGGAGTA 59.553 47.826 0.00 0.00 0.00 2.59
7740 12192 2.234168 GGAAGAACGGAAGCTTAGGAGT 59.766 50.000 0.00 0.00 0.00 3.85
7741 12193 2.498078 AGGAAGAACGGAAGCTTAGGAG 59.502 50.000 0.00 0.00 0.00 3.69
7742 12194 2.537143 AGGAAGAACGGAAGCTTAGGA 58.463 47.619 0.00 0.00 0.00 2.94
7743 12195 3.194968 TGTAGGAAGAACGGAAGCTTAGG 59.805 47.826 0.00 0.00 0.00 2.69
7744 12196 4.451629 TGTAGGAAGAACGGAAGCTTAG 57.548 45.455 0.00 0.00 0.00 2.18
7745 12197 5.416271 AATGTAGGAAGAACGGAAGCTTA 57.584 39.130 0.00 0.00 0.00 3.09
7746 12198 3.983044 ATGTAGGAAGAACGGAAGCTT 57.017 42.857 0.00 0.00 0.00 3.74
7747 12199 3.983044 AATGTAGGAAGAACGGAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
7748 12200 6.679327 AAATAATGTAGGAAGAACGGAAGC 57.321 37.500 0.00 0.00 0.00 3.86
7765 12217 9.097257 CGGAAGGATTTTTGCAACATAAATAAT 57.903 29.630 0.00 0.00 28.39 1.28
7766 12218 7.064016 GCGGAAGGATTTTTGCAACATAAATAA 59.936 33.333 0.00 0.00 28.39 1.40
7767 12219 6.533367 GCGGAAGGATTTTTGCAACATAAATA 59.467 34.615 0.00 0.00 28.39 1.40
7768 12220 5.351189 GCGGAAGGATTTTTGCAACATAAAT 59.649 36.000 0.00 2.56 30.24 1.40
7769 12221 4.688413 GCGGAAGGATTTTTGCAACATAAA 59.312 37.500 0.00 0.00 0.00 1.40
7770 12222 4.241681 GCGGAAGGATTTTTGCAACATAA 58.758 39.130 0.00 0.00 0.00 1.90
7771 12223 3.256879 TGCGGAAGGATTTTTGCAACATA 59.743 39.130 0.00 0.00 0.00 2.29
7772 12224 2.036992 TGCGGAAGGATTTTTGCAACAT 59.963 40.909 0.00 0.00 0.00 2.71
7773 12225 1.410517 TGCGGAAGGATTTTTGCAACA 59.589 42.857 0.00 0.00 0.00 3.33
7774 12226 2.147436 TGCGGAAGGATTTTTGCAAC 57.853 45.000 0.00 0.00 0.00 4.17
7775 12227 2.159043 TGTTGCGGAAGGATTTTTGCAA 60.159 40.909 0.00 0.00 39.73 4.08
7776 12228 1.410517 TGTTGCGGAAGGATTTTTGCA 59.589 42.857 0.00 0.00 0.00 4.08
7777 12229 2.147436 TGTTGCGGAAGGATTTTTGC 57.853 45.000 0.00 0.00 0.00 3.68
7778 12230 3.911868 TGATGTTGCGGAAGGATTTTTG 58.088 40.909 0.00 0.00 0.00 2.44
7779 12231 4.381932 GGATGATGTTGCGGAAGGATTTTT 60.382 41.667 0.00 0.00 0.00 1.94
7780 12232 3.131046 GGATGATGTTGCGGAAGGATTTT 59.869 43.478 0.00 0.00 0.00 1.82
7781 12233 2.689983 GGATGATGTTGCGGAAGGATTT 59.310 45.455 0.00 0.00 0.00 2.17
7782 12234 2.301346 GGATGATGTTGCGGAAGGATT 58.699 47.619 0.00 0.00 0.00 3.01
7783 12235 1.212688 TGGATGATGTTGCGGAAGGAT 59.787 47.619 0.00 0.00 0.00 3.24
7784 12236 0.617935 TGGATGATGTTGCGGAAGGA 59.382 50.000 0.00 0.00 0.00 3.36
7785 12237 1.335810 CATGGATGATGTTGCGGAAGG 59.664 52.381 0.00 0.00 0.00 3.46
7786 12238 2.019249 ACATGGATGATGTTGCGGAAG 58.981 47.619 0.00 0.00 43.20 3.46
7787 12239 2.127271 ACATGGATGATGTTGCGGAA 57.873 45.000 0.00 0.00 43.20 4.30
7788 12240 3.880040 ACATGGATGATGTTGCGGA 57.120 47.368 0.00 0.00 43.20 5.54
7795 12247 3.861113 CGCCTTTTTCAACATGGATGATG 59.139 43.478 0.00 0.00 38.15 3.07
7796 12248 3.763360 TCGCCTTTTTCAACATGGATGAT 59.237 39.130 0.00 0.00 0.00 2.45
7797 12249 3.153130 TCGCCTTTTTCAACATGGATGA 58.847 40.909 0.00 0.00 0.00 2.92
7798 12250 3.504863 CTCGCCTTTTTCAACATGGATG 58.495 45.455 0.00 0.00 0.00 3.51
7799 12251 2.094545 GCTCGCCTTTTTCAACATGGAT 60.095 45.455 0.00 0.00 0.00 3.41
7800 12252 1.269448 GCTCGCCTTTTTCAACATGGA 59.731 47.619 0.00 0.00 0.00 3.41
7801 12253 1.000385 TGCTCGCCTTTTTCAACATGG 60.000 47.619 0.00 0.00 0.00 3.66
7802 12254 2.053627 GTGCTCGCCTTTTTCAACATG 58.946 47.619 0.00 0.00 0.00 3.21
7803 12255 1.680735 TGTGCTCGCCTTTTTCAACAT 59.319 42.857 0.00 0.00 0.00 2.71
7804 12256 1.098869 TGTGCTCGCCTTTTTCAACA 58.901 45.000 0.00 0.00 0.00 3.33
7816 12268 2.111756 GCAGTTCTTTTTGTGTGCTCG 58.888 47.619 0.00 0.00 0.00 5.03
7819 12271 2.992543 TGTTGCAGTTCTTTTTGTGTGC 59.007 40.909 0.00 0.00 0.00 4.57
7820 12272 4.236935 AGTGTTGCAGTTCTTTTTGTGTG 58.763 39.130 0.00 0.00 0.00 3.82
7824 12276 6.091169 ACATTCAAGTGTTGCAGTTCTTTTTG 59.909 34.615 0.00 0.00 0.00 2.44
7838 12290 5.477510 TGCAACAAAGAAACATTCAAGTGT 58.522 33.333 0.00 0.00 0.00 3.55
7852 12304 5.353938 CCCATCCTCATTATTGCAACAAAG 58.646 41.667 0.00 0.00 0.00 2.77
7872 12367 1.061324 AACCACCGGTCTTAACCCCA 61.061 55.000 2.59 0.00 43.21 4.96
7880 12375 2.446994 TGGTCCAACCACCGGTCT 60.447 61.111 2.59 0.00 44.79 3.85
7884 12379 1.191535 TAGATCTGGTCCAACCACCG 58.808 55.000 5.18 0.00 44.79 4.94
7886 12381 2.618053 CGTTAGATCTGGTCCAACCAC 58.382 52.381 5.18 0.00 44.79 4.16
7896 12391 2.166459 TCCTCAACAGCCGTTAGATCTG 59.834 50.000 5.18 0.00 32.75 2.90
7925 12420 7.042051 GCATACGCTAGTGGATAATCTGAAAAA 60.042 37.037 8.42 0.00 34.30 1.94
7943 12438 0.108329 AAGCCAACTACGCATACGCT 60.108 50.000 0.00 0.00 45.53 5.07
7947 12442 1.207089 AGCTGAAGCCAACTACGCATA 59.793 47.619 0.00 0.00 43.38 3.14
7949 12444 0.950555 CAGCTGAAGCCAACTACGCA 60.951 55.000 8.42 0.00 43.38 5.24
7956 12451 1.888512 GTGATTTCCAGCTGAAGCCAA 59.111 47.619 17.39 0.22 43.38 4.52
7967 12462 3.053291 GCCCGCGTGTGATTTCCA 61.053 61.111 4.92 0.00 0.00 3.53
7993 12489 0.458370 CACGCGTCACATGGATGAGA 60.458 55.000 9.86 0.00 36.03 3.27
7999 12495 3.118454 GGGACACGCGTCACATGG 61.118 66.667 9.86 0.00 45.58 3.66
8016 12512 1.978455 TAATGCTAGGTGTGCCCCGG 61.978 60.000 0.00 0.00 34.57 5.73
8017 12513 0.108585 ATAATGCTAGGTGTGCCCCG 59.891 55.000 0.00 0.00 34.57 5.73
8018 12514 1.421646 AGATAATGCTAGGTGTGCCCC 59.578 52.381 0.00 0.00 34.57 5.80
8050 12546 1.865788 GCAACAAGGGCTCGATTGCA 61.866 55.000 15.08 0.00 44.01 4.08
8051 12547 1.153958 GCAACAAGGGCTCGATTGC 60.154 57.895 6.72 6.72 38.93 3.56
8052 12548 0.169672 CTGCAACAAGGGCTCGATTG 59.830 55.000 0.00 0.00 0.00 2.67
8054 12550 0.250901 AACTGCAACAAGGGCTCGAT 60.251 50.000 0.00 0.00 0.00 3.59
8056 12552 0.385390 AAAACTGCAACAAGGGCTCG 59.615 50.000 0.00 0.00 0.00 5.03
8069 12565 2.851824 GAGTTGTTGCGGTGAAAAACTG 59.148 45.455 0.00 0.00 38.30 3.16
8070 12566 2.490115 TGAGTTGTTGCGGTGAAAAACT 59.510 40.909 0.00 0.00 0.00 2.66
8071 12567 2.869897 TGAGTTGTTGCGGTGAAAAAC 58.130 42.857 0.00 0.00 0.00 2.43
8086 12583 5.263599 TCCAAATCCTGCAACATATGAGTT 58.736 37.500 10.38 0.00 0.00 3.01
8117 12614 2.076863 GACAAAATGACTCACCGAGGG 58.923 52.381 0.00 0.00 33.35 4.30
8119 12616 4.811555 TTTGACAAAATGACTCACCGAG 57.188 40.909 0.00 0.00 35.52 4.63
8121 12618 4.917415 GGATTTTGACAAAATGACTCACCG 59.083 41.667 26.73 0.00 40.97 4.94
8126 12623 7.449395 TGATGAGAGGATTTTGACAAAATGACT 59.551 33.333 26.73 22.69 40.97 3.41
8151 12648 4.202040 TGCCATTCTGTCAACTTTTCTGTG 60.202 41.667 0.00 0.00 0.00 3.66
8152 12649 3.953612 TGCCATTCTGTCAACTTTTCTGT 59.046 39.130 0.00 0.00 0.00 3.41
8155 12652 4.305989 TGTGCCATTCTGTCAACTTTTC 57.694 40.909 0.00 0.00 0.00 2.29
8156 12653 4.160252 AGTTGTGCCATTCTGTCAACTTTT 59.840 37.500 0.00 0.00 43.68 2.27
8164 12661 4.341806 TCAATGAAAGTTGTGCCATTCTGT 59.658 37.500 0.00 0.00 0.00 3.41
8200 12697 3.566322 CAGTTTACGGGTCCATGTTGAAA 59.434 43.478 0.00 0.00 0.00 2.69
8213 12710 0.808755 GAACCATGGGCAGTTTACGG 59.191 55.000 18.09 0.00 0.00 4.02
8215 12712 0.808755 CCGAACCATGGGCAGTTTAC 59.191 55.000 18.09 0.00 0.00 2.01
8226 12723 0.608035 ACCAAATGCGTCCGAACCAT 60.608 50.000 0.00 0.00 0.00 3.55
8231 12728 4.602159 GGTACCAAATGCGTCCGA 57.398 55.556 7.15 0.00 0.00 4.55
8237 12734 9.962289 TTCATGGACTGATAGGGTACCAAATGC 62.962 44.444 15.35 0.00 42.94 3.56
8238 12735 6.634726 TTCATGGACTGATAGGGTACCAAATG 60.635 42.308 15.35 0.88 42.94 2.32
8239 12736 5.431731 TTCATGGACTGATAGGGTACCAAAT 59.568 40.000 15.35 6.05 42.94 2.32
8240 12737 4.785914 TTCATGGACTGATAGGGTACCAAA 59.214 41.667 15.35 0.29 42.94 3.28
8241 12738 4.163458 GTTCATGGACTGATAGGGTACCAA 59.837 45.833 15.35 0.72 42.94 3.67
8242 12739 3.709653 GTTCATGGACTGATAGGGTACCA 59.290 47.826 15.35 0.00 42.94 3.25
8243 12740 3.071167 GGTTCATGGACTGATAGGGTACC 59.929 52.174 2.17 2.17 41.33 3.34
8244 12741 3.243771 CGGTTCATGGACTGATAGGGTAC 60.244 52.174 7.22 0.00 32.72 3.34
8245 12742 2.963101 CGGTTCATGGACTGATAGGGTA 59.037 50.000 7.22 0.00 32.72 3.69
8246 12743 1.762957 CGGTTCATGGACTGATAGGGT 59.237 52.381 7.22 0.00 32.72 4.34
8247 12744 2.039418 TCGGTTCATGGACTGATAGGG 58.961 52.381 11.93 0.00 32.72 3.53
8248 12745 2.430694 TGTCGGTTCATGGACTGATAGG 59.569 50.000 18.82 0.00 37.28 2.57
8249 12746 3.801114 TGTCGGTTCATGGACTGATAG 57.199 47.619 18.82 0.00 37.28 2.08
8250 12747 4.058721 CATGTCGGTTCATGGACTGATA 57.941 45.455 18.82 16.44 40.77 2.15
8251 12748 2.910199 CATGTCGGTTCATGGACTGAT 58.090 47.619 18.82 0.83 40.77 2.90
8252 12749 2.385013 CATGTCGGTTCATGGACTGA 57.615 50.000 11.93 11.93 40.77 3.41
8258 12755 4.082841 TCAAAATGTCCATGTCGGTTCATG 60.083 41.667 8.43 8.43 43.14 3.07
8259 12756 4.078537 TCAAAATGTCCATGTCGGTTCAT 58.921 39.130 0.00 0.00 35.57 2.57
8260 12757 3.481453 TCAAAATGTCCATGTCGGTTCA 58.519 40.909 0.00 0.00 35.57 3.18
8261 12758 4.701956 ATCAAAATGTCCATGTCGGTTC 57.298 40.909 0.00 0.00 35.57 3.62
8262 12759 4.398044 GGTATCAAAATGTCCATGTCGGTT 59.602 41.667 0.00 0.00 35.57 4.44
8263 12760 3.945285 GGTATCAAAATGTCCATGTCGGT 59.055 43.478 0.00 0.00 35.57 4.69
8264 12761 3.315191 GGGTATCAAAATGTCCATGTCGG 59.685 47.826 0.00 0.00 0.00 4.79
8265 12762 4.199310 AGGGTATCAAAATGTCCATGTCG 58.801 43.478 0.00 0.00 0.00 4.35
8266 12763 6.147821 CGATAGGGTATCAAAATGTCCATGTC 59.852 42.308 0.00 0.00 34.87 3.06
8267 12764 5.997746 CGATAGGGTATCAAAATGTCCATGT 59.002 40.000 0.00 0.00 34.87 3.21
8268 12765 6.486253 CGATAGGGTATCAAAATGTCCATG 57.514 41.667 0.00 0.00 34.87 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.