Multiple sequence alignment - TraesCS5D01G152000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G152000 chr5D 100.000 4624 0 0 1 4624 241115561 241110938 0.000000e+00 8540.0
1 TraesCS5D01G152000 chr5D 96.269 804 28 2 3821 4624 205116843 205117644 0.000000e+00 1317.0
2 TraesCS5D01G152000 chr5D 95.901 805 31 2 3821 4624 464904248 464905051 0.000000e+00 1303.0
3 TraesCS5D01G152000 chr5A 92.200 2795 133 29 1080 3817 312751056 312753822 0.000000e+00 3875.0
4 TraesCS5D01G152000 chr5A 86.692 804 34 23 309 1089 312750280 312751033 0.000000e+00 824.0
5 TraesCS5D01G152000 chr5A 85.000 300 40 5 1 297 448539137 448539434 2.700000e-77 300.0
6 TraesCS5D01G152000 chr5B 96.154 2002 69 4 1714 3712 262563664 262565660 0.000000e+00 3264.0
7 TraesCS5D01G152000 chr5B 89.846 1497 77 31 309 1761 262562180 262563645 0.000000e+00 1853.0
8 TraesCS5D01G152000 chr5B 85.859 297 38 4 3 295 358812309 358812013 3.470000e-81 313.0
9 TraesCS5D01G152000 chr5B 85.424 295 38 5 1 292 474442440 474442732 7.520000e-78 302.0
10 TraesCS5D01G152000 chr5B 83.557 298 43 6 1 295 232986558 232986264 1.640000e-69 274.0
11 TraesCS5D01G152000 chr5B 90.909 110 7 2 3710 3817 262565699 262565807 1.340000e-30 145.0
12 TraesCS5D01G152000 chr5B 93.478 46 1 2 1049 1092 61353745 61353790 2.990000e-07 67.6
13 TraesCS5D01G152000 chr6D 96.149 805 29 2 3820 4624 131932015 131932817 0.000000e+00 1314.0
14 TraesCS5D01G152000 chr6D 95.776 805 33 1 3820 4624 14595179 14595982 0.000000e+00 1297.0
15 TraesCS5D01G152000 chr6D 95.647 804 34 1 3821 4624 53763982 53763180 0.000000e+00 1290.0
16 TraesCS5D01G152000 chr2D 95.890 803 33 0 3822 4624 319689210 319688408 0.000000e+00 1301.0
17 TraesCS5D01G152000 chr7D 95.771 804 34 0 3821 4624 255782423 255781620 0.000000e+00 1297.0
18 TraesCS5D01G152000 chr7D 95.522 804 35 1 3821 4624 98404426 98403624 0.000000e+00 1284.0
19 TraesCS5D01G152000 chr7D 85.667 300 37 6 1 296 365973749 365973452 1.250000e-80 311.0
20 TraesCS5D01G152000 chr7D 85.874 269 28 7 1 266 259283867 259283606 1.270000e-70 278.0
21 TraesCS5D01G152000 chrUn 95.297 808 37 1 3817 4624 31727821 31727015 0.000000e+00 1280.0
22 TraesCS5D01G152000 chr1B 85.473 296 38 5 1 292 490758485 490758779 2.090000e-78 303.0
23 TraesCS5D01G152000 chr1B 83.278 299 46 4 1 296 105543751 105543454 5.900000e-69 272.0
24 TraesCS5D01G152000 chr1A 84.746 295 40 5 1 292 462634294 462634586 1.630000e-74 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G152000 chr5D 241110938 241115561 4623 True 8540.0 8540 100.000 1 4624 1 chr5D.!!$R1 4623
1 TraesCS5D01G152000 chr5D 205116843 205117644 801 False 1317.0 1317 96.269 3821 4624 1 chr5D.!!$F1 803
2 TraesCS5D01G152000 chr5D 464904248 464905051 803 False 1303.0 1303 95.901 3821 4624 1 chr5D.!!$F2 803
3 TraesCS5D01G152000 chr5A 312750280 312753822 3542 False 2349.5 3875 89.446 309 3817 2 chr5A.!!$F2 3508
4 TraesCS5D01G152000 chr5B 262562180 262565807 3627 False 1754.0 3264 92.303 309 3817 3 chr5B.!!$F3 3508
5 TraesCS5D01G152000 chr6D 131932015 131932817 802 False 1314.0 1314 96.149 3820 4624 1 chr6D.!!$F2 804
6 TraesCS5D01G152000 chr6D 14595179 14595982 803 False 1297.0 1297 95.776 3820 4624 1 chr6D.!!$F1 804
7 TraesCS5D01G152000 chr6D 53763180 53763982 802 True 1290.0 1290 95.647 3821 4624 1 chr6D.!!$R1 803
8 TraesCS5D01G152000 chr2D 319688408 319689210 802 True 1301.0 1301 95.890 3822 4624 1 chr2D.!!$R1 802
9 TraesCS5D01G152000 chr7D 255781620 255782423 803 True 1297.0 1297 95.771 3821 4624 1 chr7D.!!$R2 803
10 TraesCS5D01G152000 chr7D 98403624 98404426 802 True 1284.0 1284 95.522 3821 4624 1 chr7D.!!$R1 803
11 TraesCS5D01G152000 chrUn 31727015 31727821 806 True 1280.0 1280 95.297 3817 4624 1 chrUn.!!$R1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 896 0.034896 TCAACGTTCCTCTTCTGGCC 59.965 55.0 0.00 0.0 0.00 5.36 F
1392 1493 0.110419 TTCTGTTTCCGCGCATTTCG 60.110 50.0 8.75 0.0 42.12 3.46 F
1960 2153 0.401738 CCCAAGAGGACAGCCAAGAA 59.598 55.0 0.00 0.0 38.24 2.52 F
2747 2943 1.284982 CGAACCGTGCCACAAGAGAG 61.285 60.0 0.00 0.0 0.00 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2183 0.249868 CGGTCTCTGCTTGGTGTTGA 60.250 55.0 0.00 0.0 0.00 3.18 R
2747 2943 0.672342 GATCCAGCACCATGGCATTC 59.328 55.0 13.04 0.0 40.41 2.67 R
2877 3073 0.698238 TGCAATGGCCTGTTCCTACT 59.302 50.0 3.32 0.0 40.13 2.57 R
4339 4596 0.036164 ACGCTTTGTCATGCCTGGTA 59.964 50.0 0.00 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.834168 ATTTCGATTGGGTTGTAAGACAAT 57.166 33.333 0.00 0.00 40.59 2.71
24 25 6.642707 TTTCGATTGGGTTGTAAGACAATT 57.357 33.333 0.00 0.00 40.59 2.32
25 26 6.642707 TTCGATTGGGTTGTAAGACAATTT 57.357 33.333 0.00 0.00 40.59 1.82
26 27 6.007936 TCGATTGGGTTGTAAGACAATTTG 57.992 37.500 0.00 0.00 40.59 2.32
27 28 5.765677 TCGATTGGGTTGTAAGACAATTTGA 59.234 36.000 2.79 0.00 40.59 2.69
28 29 6.432783 TCGATTGGGTTGTAAGACAATTTGAT 59.567 34.615 2.79 0.00 40.59 2.57
29 30 7.608376 TCGATTGGGTTGTAAGACAATTTGATA 59.392 33.333 2.79 0.00 40.59 2.15
30 31 8.405531 CGATTGGGTTGTAAGACAATTTGATAT 58.594 33.333 2.79 0.00 40.59 1.63
32 33 9.874205 ATTGGGTTGTAAGACAATTTGATATTG 57.126 29.630 2.79 0.00 40.59 1.90
33 34 8.415950 TGGGTTGTAAGACAATTTGATATTGT 57.584 30.769 2.79 0.85 40.59 2.71
34 35 8.865090 TGGGTTGTAAGACAATTTGATATTGTT 58.135 29.630 2.79 0.00 40.59 2.83
35 36 9.705290 GGGTTGTAAGACAATTTGATATTGTTT 57.295 29.630 2.79 0.00 40.59 2.83
51 52 9.322773 TGATATTGTTTTCTTTTCATGCAAACA 57.677 25.926 0.00 0.00 35.94 2.83
58 59 9.305110 GTTTTCTTTTCATGCAAACATATTTCG 57.695 29.630 0.00 0.00 33.67 3.46
59 60 8.809159 TTTCTTTTCATGCAAACATATTTCGA 57.191 26.923 0.00 0.00 33.67 3.71
60 61 8.984891 TTCTTTTCATGCAAACATATTTCGAT 57.015 26.923 0.00 0.00 33.67 3.59
61 62 8.984891 TCTTTTCATGCAAACATATTTCGATT 57.015 26.923 0.00 0.00 33.67 3.34
62 63 8.862074 TCTTTTCATGCAAACATATTTCGATTG 58.138 29.630 0.00 0.00 33.67 2.67
63 64 7.522901 TTTCATGCAAACATATTTCGATTGG 57.477 32.000 0.00 0.00 33.67 3.16
64 65 5.590145 TCATGCAAACATATTTCGATTGGG 58.410 37.500 0.00 0.00 33.67 4.12
65 66 5.126869 TCATGCAAACATATTTCGATTGGGT 59.873 36.000 0.00 0.00 33.67 4.51
66 67 5.398603 TGCAAACATATTTCGATTGGGTT 57.601 34.783 0.00 0.00 0.00 4.11
67 68 5.167121 TGCAAACATATTTCGATTGGGTTG 58.833 37.500 0.00 0.00 0.00 3.77
68 69 5.167845 GCAAACATATTTCGATTGGGTTGT 58.832 37.500 0.00 0.00 0.00 3.32
69 70 6.071896 TGCAAACATATTTCGATTGGGTTGTA 60.072 34.615 0.00 0.00 0.00 2.41
70 71 6.809196 GCAAACATATTTCGATTGGGTTGTAA 59.191 34.615 0.00 0.00 0.00 2.41
71 72 7.329717 GCAAACATATTTCGATTGGGTTGTAAA 59.670 33.333 0.00 0.00 0.00 2.01
72 73 8.859156 CAAACATATTTCGATTGGGTTGTAAAG 58.141 33.333 0.00 0.00 0.00 1.85
73 74 7.931578 ACATATTTCGATTGGGTTGTAAAGA 57.068 32.000 0.00 0.00 0.00 2.52
74 75 7.758495 ACATATTTCGATTGGGTTGTAAAGAC 58.242 34.615 0.00 0.00 0.00 3.01
75 76 7.610305 ACATATTTCGATTGGGTTGTAAAGACT 59.390 33.333 0.00 0.00 0.00 3.24
76 77 9.104965 CATATTTCGATTGGGTTGTAAAGACTA 57.895 33.333 0.00 0.00 0.00 2.59
77 78 9.847224 ATATTTCGATTGGGTTGTAAAGACTAT 57.153 29.630 0.00 0.00 0.00 2.12
78 79 7.989416 TTTCGATTGGGTTGTAAAGACTATT 57.011 32.000 0.00 0.00 0.00 1.73
79 80 7.989416 TTCGATTGGGTTGTAAAGACTATTT 57.011 32.000 0.00 0.00 0.00 1.40
80 81 7.372451 TCGATTGGGTTGTAAAGACTATTTG 57.628 36.000 0.00 0.00 0.00 2.32
81 82 7.162761 TCGATTGGGTTGTAAAGACTATTTGA 58.837 34.615 0.00 0.00 0.00 2.69
82 83 7.333423 TCGATTGGGTTGTAAAGACTATTTGAG 59.667 37.037 0.00 0.00 0.00 3.02
83 84 7.333423 CGATTGGGTTGTAAAGACTATTTGAGA 59.667 37.037 0.00 0.00 0.00 3.27
84 85 7.979444 TTGGGTTGTAAAGACTATTTGAGAG 57.021 36.000 0.00 0.00 0.00 3.20
85 86 5.938125 TGGGTTGTAAAGACTATTTGAGAGC 59.062 40.000 0.00 0.00 0.00 4.09
86 87 6.174049 GGGTTGTAAAGACTATTTGAGAGCT 58.826 40.000 0.00 0.00 0.00 4.09
87 88 7.038587 TGGGTTGTAAAGACTATTTGAGAGCTA 60.039 37.037 0.00 0.00 0.00 3.32
88 89 7.988028 GGGTTGTAAAGACTATTTGAGAGCTAT 59.012 37.037 0.00 0.00 0.00 2.97
89 90 8.821894 GGTTGTAAAGACTATTTGAGAGCTATG 58.178 37.037 0.00 0.00 0.00 2.23
90 91 9.372369 GTTGTAAAGACTATTTGAGAGCTATGT 57.628 33.333 0.00 0.00 0.00 2.29
91 92 9.944376 TTGTAAAGACTATTTGAGAGCTATGTT 57.056 29.630 0.00 0.00 0.00 2.71
92 93 9.944376 TGTAAAGACTATTTGAGAGCTATGTTT 57.056 29.630 0.00 0.00 0.00 2.83
95 96 9.678260 AAAGACTATTTGAGAGCTATGTTTGAT 57.322 29.630 0.00 0.00 0.00 2.57
96 97 9.678260 AAGACTATTTGAGAGCTATGTTTGATT 57.322 29.630 0.00 0.00 0.00 2.57
97 98 9.678260 AGACTATTTGAGAGCTATGTTTGATTT 57.322 29.630 0.00 0.00 0.00 2.17
98 99 9.713740 GACTATTTGAGAGCTATGTTTGATTTG 57.286 33.333 0.00 0.00 0.00 2.32
99 100 9.453572 ACTATTTGAGAGCTATGTTTGATTTGA 57.546 29.630 0.00 0.00 0.00 2.69
101 102 8.976986 ATTTGAGAGCTATGTTTGATTTGAAC 57.023 30.769 0.00 0.00 0.00 3.18
102 103 6.500684 TGAGAGCTATGTTTGATTTGAACC 57.499 37.500 0.00 0.00 0.00 3.62
103 104 6.003326 TGAGAGCTATGTTTGATTTGAACCA 58.997 36.000 0.00 0.00 0.00 3.67
104 105 6.660521 TGAGAGCTATGTTTGATTTGAACCAT 59.339 34.615 0.00 0.00 0.00 3.55
105 106 7.177216 TGAGAGCTATGTTTGATTTGAACCATT 59.823 33.333 0.00 0.00 0.00 3.16
106 107 7.899973 AGAGCTATGTTTGATTTGAACCATTT 58.100 30.769 0.00 0.00 0.00 2.32
107 108 8.031277 AGAGCTATGTTTGATTTGAACCATTTC 58.969 33.333 0.00 0.00 0.00 2.17
108 109 7.669427 AGCTATGTTTGATTTGAACCATTTCA 58.331 30.769 0.00 0.00 40.14 2.69
109 110 8.316214 AGCTATGTTTGATTTGAACCATTTCAT 58.684 29.630 0.00 0.00 41.50 2.57
110 111 9.585099 GCTATGTTTGATTTGAACCATTTCATA 57.415 29.630 0.00 0.00 41.50 2.15
113 114 8.254178 TGTTTGATTTGAACCATTTCATATGC 57.746 30.769 0.00 0.00 41.50 3.14
114 115 7.876582 TGTTTGATTTGAACCATTTCATATGCA 59.123 29.630 0.00 0.00 41.50 3.96
115 116 8.885722 GTTTGATTTGAACCATTTCATATGCAT 58.114 29.630 3.79 3.79 41.50 3.96
116 117 8.651391 TTGATTTGAACCATTTCATATGCATC 57.349 30.769 0.19 0.00 41.50 3.91
117 118 7.783042 TGATTTGAACCATTTCATATGCATCA 58.217 30.769 0.19 0.00 41.50 3.07
118 119 8.258708 TGATTTGAACCATTTCATATGCATCAA 58.741 29.630 0.19 0.00 41.50 2.57
119 120 9.268268 GATTTGAACCATTTCATATGCATCAAT 57.732 29.630 0.19 0.00 41.50 2.57
120 121 9.621629 ATTTGAACCATTTCATATGCATCAATT 57.378 25.926 0.19 0.00 41.50 2.32
121 122 9.451002 TTTGAACCATTTCATATGCATCAATTT 57.549 25.926 0.19 0.00 41.50 1.82
122 123 8.651391 TGAACCATTTCATATGCATCAATTTC 57.349 30.769 0.19 1.32 36.79 2.17
123 124 8.258708 TGAACCATTTCATATGCATCAATTTCA 58.741 29.630 0.19 3.70 36.79 2.69
124 125 9.268268 GAACCATTTCATATGCATCAATTTCAT 57.732 29.630 0.19 0.00 0.00 2.57
125 126 9.621629 AACCATTTCATATGCATCAATTTCATT 57.378 25.926 0.19 0.00 0.00 2.57
126 127 9.621629 ACCATTTCATATGCATCAATTTCATTT 57.378 25.926 0.19 0.00 0.00 2.32
137 138 9.356433 TGCATCAATTTCATTTTATGTACTGTG 57.644 29.630 0.00 0.00 0.00 3.66
138 139 8.323140 GCATCAATTTCATTTTATGTACTGTGC 58.677 33.333 0.00 0.00 0.00 4.57
139 140 9.577110 CATCAATTTCATTTTATGTACTGTGCT 57.423 29.630 0.00 0.00 0.00 4.40
140 141 8.969121 TCAATTTCATTTTATGTACTGTGCTG 57.031 30.769 0.00 0.00 0.00 4.41
141 142 8.028354 TCAATTTCATTTTATGTACTGTGCTGG 58.972 33.333 0.00 0.00 0.00 4.85
142 143 5.895636 TTCATTTTATGTACTGTGCTGGG 57.104 39.130 0.00 0.00 0.00 4.45
143 144 5.172687 TCATTTTATGTACTGTGCTGGGA 57.827 39.130 0.00 0.00 0.00 4.37
144 145 5.185454 TCATTTTATGTACTGTGCTGGGAG 58.815 41.667 0.00 0.00 0.00 4.30
145 146 4.901197 TTTTATGTACTGTGCTGGGAGA 57.099 40.909 0.00 0.00 0.00 3.71
146 147 4.901197 TTTATGTACTGTGCTGGGAGAA 57.099 40.909 0.00 0.00 0.00 2.87
147 148 2.770164 ATGTACTGTGCTGGGAGAAC 57.230 50.000 0.00 0.00 0.00 3.01
148 149 0.317160 TGTACTGTGCTGGGAGAACG 59.683 55.000 0.00 0.00 0.00 3.95
149 150 0.389948 GTACTGTGCTGGGAGAACGG 60.390 60.000 0.00 0.00 36.17 4.44
150 151 2.167398 TACTGTGCTGGGAGAACGGC 62.167 60.000 0.00 0.00 43.06 5.68
151 152 4.680237 TGTGCTGGGAGAACGGCG 62.680 66.667 4.80 4.80 45.70 6.46
152 153 4.373116 GTGCTGGGAGAACGGCGA 62.373 66.667 16.62 0.00 45.70 5.54
153 154 4.069232 TGCTGGGAGAACGGCGAG 62.069 66.667 16.62 0.00 45.70 5.03
154 155 3.760035 GCTGGGAGAACGGCGAGA 61.760 66.667 16.62 0.00 32.35 4.04
155 156 3.082579 GCTGGGAGAACGGCGAGAT 62.083 63.158 16.62 0.00 32.35 2.75
156 157 1.227089 CTGGGAGAACGGCGAGATG 60.227 63.158 16.62 0.00 0.00 2.90
157 158 2.586357 GGGAGAACGGCGAGATGC 60.586 66.667 16.62 3.16 45.38 3.91
166 167 3.272334 GCGAGATGCGGCCGAAAT 61.272 61.111 33.48 22.03 41.29 2.17
167 168 2.628106 CGAGATGCGGCCGAAATG 59.372 61.111 33.48 8.89 36.03 2.32
168 169 2.329339 GAGATGCGGCCGAAATGC 59.671 61.111 33.48 13.08 0.00 3.56
169 170 2.438254 AGATGCGGCCGAAATGCA 60.438 55.556 33.48 18.08 43.67 3.96
170 171 2.025156 GATGCGGCCGAAATGCAG 59.975 61.111 33.48 0.00 42.65 4.41
179 180 4.759096 GAAATGCAGCCGCGCGTT 62.759 61.111 29.95 14.55 42.89 4.84
205 206 2.824041 GGCCGTCGCATCCACAAT 60.824 61.111 0.00 0.00 36.38 2.71
206 207 2.709475 GCCGTCGCATCCACAATC 59.291 61.111 0.00 0.00 34.03 2.67
207 208 2.823829 GCCGTCGCATCCACAATCC 61.824 63.158 0.00 0.00 34.03 3.01
208 209 2.525248 CCGTCGCATCCACAATCCG 61.525 63.158 0.00 0.00 0.00 4.18
209 210 1.518352 CGTCGCATCCACAATCCGA 60.518 57.895 0.00 0.00 0.00 4.55
210 211 0.875908 CGTCGCATCCACAATCCGAT 60.876 55.000 0.00 0.00 0.00 4.18
211 212 0.861837 GTCGCATCCACAATCCGATC 59.138 55.000 0.00 0.00 0.00 3.69
212 213 0.463620 TCGCATCCACAATCCGATCA 59.536 50.000 0.00 0.00 0.00 2.92
213 214 0.863799 CGCATCCACAATCCGATCAG 59.136 55.000 0.00 0.00 0.00 2.90
214 215 1.538849 CGCATCCACAATCCGATCAGA 60.539 52.381 0.00 0.00 0.00 3.27
215 216 1.869767 GCATCCACAATCCGATCAGAC 59.130 52.381 0.00 0.00 0.00 3.51
216 217 2.742856 GCATCCACAATCCGATCAGACA 60.743 50.000 0.00 0.00 0.00 3.41
217 218 2.672961 TCCACAATCCGATCAGACAC 57.327 50.000 0.00 0.00 0.00 3.67
218 219 1.135112 TCCACAATCCGATCAGACACG 60.135 52.381 0.00 0.00 0.00 4.49
223 224 2.105128 CCGATCAGACACGGCCTC 59.895 66.667 0.00 0.00 42.55 4.70
224 225 2.710902 CCGATCAGACACGGCCTCA 61.711 63.158 0.00 0.00 42.55 3.86
225 226 1.439228 CGATCAGACACGGCCTCAT 59.561 57.895 0.00 0.00 0.00 2.90
226 227 0.179100 CGATCAGACACGGCCTCATT 60.179 55.000 0.00 0.00 0.00 2.57
227 228 1.067060 CGATCAGACACGGCCTCATTA 59.933 52.381 0.00 0.00 0.00 1.90
228 229 2.288457 CGATCAGACACGGCCTCATTAT 60.288 50.000 0.00 0.00 0.00 1.28
229 230 2.890808 TCAGACACGGCCTCATTATC 57.109 50.000 0.00 0.00 0.00 1.75
230 231 2.107366 TCAGACACGGCCTCATTATCA 58.893 47.619 0.00 0.00 0.00 2.15
231 232 2.700371 TCAGACACGGCCTCATTATCAT 59.300 45.455 0.00 0.00 0.00 2.45
232 233 3.062763 CAGACACGGCCTCATTATCATC 58.937 50.000 0.00 0.00 0.00 2.92
233 234 2.037772 AGACACGGCCTCATTATCATCC 59.962 50.000 0.00 0.00 0.00 3.51
234 235 1.072331 ACACGGCCTCATTATCATCCC 59.928 52.381 0.00 0.00 0.00 3.85
235 236 1.072173 CACGGCCTCATTATCATCCCA 59.928 52.381 0.00 0.00 0.00 4.37
236 237 1.774254 ACGGCCTCATTATCATCCCAA 59.226 47.619 0.00 0.00 0.00 4.12
237 238 2.174639 ACGGCCTCATTATCATCCCAAA 59.825 45.455 0.00 0.00 0.00 3.28
238 239 2.554032 CGGCCTCATTATCATCCCAAAC 59.446 50.000 0.00 0.00 0.00 2.93
239 240 3.565307 GGCCTCATTATCATCCCAAACA 58.435 45.455 0.00 0.00 0.00 2.83
240 241 3.960102 GGCCTCATTATCATCCCAAACAA 59.040 43.478 0.00 0.00 0.00 2.83
241 242 4.405358 GGCCTCATTATCATCCCAAACAAA 59.595 41.667 0.00 0.00 0.00 2.83
242 243 5.351458 GCCTCATTATCATCCCAAACAAAC 58.649 41.667 0.00 0.00 0.00 2.93
243 244 5.105392 GCCTCATTATCATCCCAAACAAACA 60.105 40.000 0.00 0.00 0.00 2.83
244 245 6.574073 GCCTCATTATCATCCCAAACAAACAA 60.574 38.462 0.00 0.00 0.00 2.83
245 246 7.385267 CCTCATTATCATCCCAAACAAACAAA 58.615 34.615 0.00 0.00 0.00 2.83
246 247 7.877097 CCTCATTATCATCCCAAACAAACAAAA 59.123 33.333 0.00 0.00 0.00 2.44
247 248 9.439500 CTCATTATCATCCCAAACAAACAAAAT 57.561 29.630 0.00 0.00 0.00 1.82
248 249 9.434420 TCATTATCATCCCAAACAAACAAAATC 57.566 29.630 0.00 0.00 0.00 2.17
249 250 8.667463 CATTATCATCCCAAACAAACAAAATCC 58.333 33.333 0.00 0.00 0.00 3.01
250 251 5.620738 TCATCCCAAACAAACAAAATCCA 57.379 34.783 0.00 0.00 0.00 3.41
251 252 5.609423 TCATCCCAAACAAACAAAATCCAG 58.391 37.500 0.00 0.00 0.00 3.86
252 253 5.365025 TCATCCCAAACAAACAAAATCCAGA 59.635 36.000 0.00 0.00 0.00 3.86
253 254 5.017294 TCCCAAACAAACAAAATCCAGAC 57.983 39.130 0.00 0.00 0.00 3.51
254 255 4.467795 TCCCAAACAAACAAAATCCAGACA 59.532 37.500 0.00 0.00 0.00 3.41
255 256 5.046304 TCCCAAACAAACAAAATCCAGACAA 60.046 36.000 0.00 0.00 0.00 3.18
256 257 5.645497 CCCAAACAAACAAAATCCAGACAAA 59.355 36.000 0.00 0.00 0.00 2.83
257 258 6.318396 CCCAAACAAACAAAATCCAGACAAAT 59.682 34.615 0.00 0.00 0.00 2.32
258 259 7.408910 CCAAACAAACAAAATCCAGACAAATC 58.591 34.615 0.00 0.00 0.00 2.17
259 260 6.826893 AACAAACAAAATCCAGACAAATCG 57.173 33.333 0.00 0.00 0.00 3.34
260 261 5.288804 ACAAACAAAATCCAGACAAATCGG 58.711 37.500 0.00 0.00 0.00 4.18
261 262 5.068460 ACAAACAAAATCCAGACAAATCGGA 59.932 36.000 0.00 0.00 33.81 4.55
262 263 4.766404 ACAAAATCCAGACAAATCGGAC 57.234 40.909 0.00 0.00 32.65 4.79
263 264 3.188460 ACAAAATCCAGACAAATCGGACG 59.812 43.478 0.00 0.00 32.65 4.79
264 265 2.762535 AATCCAGACAAATCGGACGT 57.237 45.000 0.00 0.00 32.65 4.34
265 266 2.295253 ATCCAGACAAATCGGACGTC 57.705 50.000 7.13 7.13 32.65 4.34
266 267 0.245539 TCCAGACAAATCGGACGTCC 59.754 55.000 25.28 25.28 0.00 4.79
267 268 0.037697 CCAGACAAATCGGACGTCCA 60.038 55.000 32.80 20.42 35.14 4.02
268 269 1.405526 CCAGACAAATCGGACGTCCAT 60.406 52.381 32.80 21.65 35.14 3.41
269 270 2.346803 CAGACAAATCGGACGTCCATT 58.653 47.619 32.80 25.46 35.14 3.16
270 271 2.742053 CAGACAAATCGGACGTCCATTT 59.258 45.455 32.80 28.74 35.14 2.32
271 272 3.000727 AGACAAATCGGACGTCCATTTC 58.999 45.455 32.80 22.39 35.14 2.17
272 273 2.739913 GACAAATCGGACGTCCATTTCA 59.260 45.455 32.80 12.02 35.14 2.69
273 274 2.742053 ACAAATCGGACGTCCATTTCAG 59.258 45.455 32.80 23.42 35.14 3.02
274 275 3.000041 CAAATCGGACGTCCATTTCAGA 59.000 45.455 32.80 20.89 35.14 3.27
275 276 3.543680 AATCGGACGTCCATTTCAGAT 57.456 42.857 32.80 22.10 35.14 2.90
276 277 2.293677 TCGGACGTCCATTTCAGATG 57.706 50.000 32.80 14.07 35.14 2.90
277 278 1.134818 TCGGACGTCCATTTCAGATGG 60.135 52.381 32.80 13.35 40.48 3.51
278 279 1.017387 GGACGTCCATTTCAGATGGC 58.983 55.000 29.75 0.00 39.01 4.40
279 280 0.652592 GACGTCCATTTCAGATGGCG 59.347 55.000 3.51 15.27 41.21 5.69
280 281 1.353103 CGTCCATTTCAGATGGCGC 59.647 57.895 0.00 0.00 39.01 6.53
281 282 1.353103 GTCCATTTCAGATGGCGCG 59.647 57.895 0.00 0.00 39.01 6.86
282 283 1.078497 TCCATTTCAGATGGCGCGT 60.078 52.632 8.43 0.00 39.01 6.01
283 284 0.676466 TCCATTTCAGATGGCGCGTT 60.676 50.000 8.43 0.00 39.01 4.84
284 285 0.523968 CCATTTCAGATGGCGCGTTG 60.524 55.000 8.43 0.00 31.75 4.10
285 286 0.523968 CATTTCAGATGGCGCGTTGG 60.524 55.000 8.43 0.00 0.00 3.77
286 287 0.676466 ATTTCAGATGGCGCGTTGGA 60.676 50.000 8.43 0.00 0.00 3.53
287 288 1.298157 TTTCAGATGGCGCGTTGGAG 61.298 55.000 8.43 0.00 0.00 3.86
288 289 2.434884 CAGATGGCGCGTTGGAGT 60.435 61.111 8.43 0.00 0.00 3.85
289 290 2.034879 CAGATGGCGCGTTGGAGTT 61.035 57.895 8.43 0.00 0.00 3.01
290 291 2.034879 AGATGGCGCGTTGGAGTTG 61.035 57.895 8.43 0.00 0.00 3.16
291 292 3.039202 GATGGCGCGTTGGAGTTGG 62.039 63.158 8.43 0.00 0.00 3.77
295 296 2.047655 CGCGTTGGAGTTGGGCTA 60.048 61.111 0.00 0.00 0.00 3.93
296 297 1.449601 CGCGTTGGAGTTGGGCTAT 60.450 57.895 0.00 0.00 0.00 2.97
297 298 1.705337 CGCGTTGGAGTTGGGCTATG 61.705 60.000 0.00 0.00 0.00 2.23
298 299 0.676782 GCGTTGGAGTTGGGCTATGT 60.677 55.000 0.00 0.00 0.00 2.29
299 300 1.821216 CGTTGGAGTTGGGCTATGTT 58.179 50.000 0.00 0.00 0.00 2.71
300 301 1.737793 CGTTGGAGTTGGGCTATGTTC 59.262 52.381 0.00 0.00 0.00 3.18
301 302 1.737793 GTTGGAGTTGGGCTATGTTCG 59.262 52.381 0.00 0.00 0.00 3.95
302 303 0.981183 TGGAGTTGGGCTATGTTCGT 59.019 50.000 0.00 0.00 0.00 3.85
303 304 1.338674 TGGAGTTGGGCTATGTTCGTG 60.339 52.381 0.00 0.00 0.00 4.35
304 305 1.338769 GGAGTTGGGCTATGTTCGTGT 60.339 52.381 0.00 0.00 0.00 4.49
305 306 2.093869 GGAGTTGGGCTATGTTCGTGTA 60.094 50.000 0.00 0.00 0.00 2.90
306 307 3.431766 GGAGTTGGGCTATGTTCGTGTAT 60.432 47.826 0.00 0.00 0.00 2.29
307 308 4.189231 GAGTTGGGCTATGTTCGTGTATT 58.811 43.478 0.00 0.00 0.00 1.89
408 419 1.281656 CGTTGAACCGTTTCCAGCC 59.718 57.895 0.00 0.00 0.00 4.85
409 420 1.281656 GTTGAACCGTTTCCAGCCG 59.718 57.895 0.00 0.00 0.00 5.52
414 425 3.053896 CCGTTTCCAGCCGGTTCC 61.054 66.667 1.90 0.00 39.38 3.62
415 426 2.281208 CGTTTCCAGCCGGTTCCA 60.281 61.111 1.90 0.00 0.00 3.53
416 427 2.325082 CGTTTCCAGCCGGTTCCAG 61.325 63.158 1.90 0.00 0.00 3.86
417 428 2.282180 TTTCCAGCCGGTTCCAGC 60.282 61.111 1.90 0.00 0.00 4.85
613 626 1.343142 CAAGTGCCCTTTTTACCCCAC 59.657 52.381 0.00 0.00 0.00 4.61
614 627 0.178944 AGTGCCCTTTTTACCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
615 628 0.470268 GTGCCCTTTTTACCCCACCA 60.470 55.000 0.00 0.00 0.00 4.17
616 629 0.470268 TGCCCTTTTTACCCCACCAC 60.470 55.000 0.00 0.00 0.00 4.16
617 630 0.470268 GCCCTTTTTACCCCACCACA 60.470 55.000 0.00 0.00 0.00 4.17
618 631 1.334160 CCCTTTTTACCCCACCACAC 58.666 55.000 0.00 0.00 0.00 3.82
619 632 1.334160 CCTTTTTACCCCACCACACC 58.666 55.000 0.00 0.00 0.00 4.16
620 633 1.411787 CCTTTTTACCCCACCACACCA 60.412 52.381 0.00 0.00 0.00 4.17
621 634 1.684450 CTTTTTACCCCACCACACCAC 59.316 52.381 0.00 0.00 0.00 4.16
689 709 0.820871 CTTCGGTGGAGAGAGGAAGG 59.179 60.000 0.00 0.00 32.50 3.46
724 751 1.658686 GCGTCCTCGAGGTCAGTCAT 61.659 60.000 30.17 0.00 39.71 3.06
735 762 0.036388 GTCAGTCATCTCCCGGCAAA 60.036 55.000 0.00 0.00 0.00 3.68
736 763 0.911769 TCAGTCATCTCCCGGCAAAT 59.088 50.000 0.00 0.00 0.00 2.32
737 764 1.134401 TCAGTCATCTCCCGGCAAATC 60.134 52.381 0.00 0.00 0.00 2.17
738 765 0.911769 AGTCATCTCCCGGCAAATCA 59.088 50.000 0.00 0.00 0.00 2.57
739 766 1.492176 AGTCATCTCCCGGCAAATCAT 59.508 47.619 0.00 0.00 0.00 2.45
740 767 2.092212 AGTCATCTCCCGGCAAATCATT 60.092 45.455 0.00 0.00 0.00 2.57
741 768 2.033801 GTCATCTCCCGGCAAATCATTG 59.966 50.000 0.00 0.00 39.65 2.82
742 769 2.026641 CATCTCCCGGCAAATCATTGT 58.973 47.619 0.00 0.00 38.85 2.71
743 770 2.214376 TCTCCCGGCAAATCATTGTT 57.786 45.000 0.00 0.00 38.85 2.83
744 771 1.818060 TCTCCCGGCAAATCATTGTTG 59.182 47.619 0.00 0.00 38.85 3.33
745 772 0.894141 TCCCGGCAAATCATTGTTGG 59.106 50.000 0.00 0.00 38.85 3.77
746 773 0.740516 CCCGGCAAATCATTGTTGGC 60.741 55.000 0.00 4.14 45.41 4.52
747 774 0.247185 CCGGCAAATCATTGTTGGCT 59.753 50.000 10.49 0.00 46.37 4.75
748 775 1.352114 CGGCAAATCATTGTTGGCTG 58.648 50.000 10.49 3.49 46.37 4.85
749 776 1.729284 GGCAAATCATTGTTGGCTGG 58.271 50.000 6.38 0.00 45.42 4.85
756 783 2.665165 TCATTGTTGGCTGGTTCTTGT 58.335 42.857 0.00 0.00 0.00 3.16
758 785 1.110442 TTGTTGGCTGGTTCTTGTGG 58.890 50.000 0.00 0.00 0.00 4.17
780 807 1.604604 TCCTTTTCTGGCGTTCTTGG 58.395 50.000 0.00 0.00 0.00 3.61
799 832 7.557875 TCTTGGGTAGTAGCTTTAGGTTTTA 57.442 36.000 0.00 0.00 0.00 1.52
823 856 7.767250 AGATGATCGTATCTGTGGAGAAATA 57.233 36.000 0.00 0.00 36.12 1.40
827 860 3.958147 TCGTATCTGTGGAGAAATAGCCA 59.042 43.478 0.00 0.00 0.00 4.75
860 893 3.060602 GTTCCTCAACGTTCCTCTTCTG 58.939 50.000 0.00 0.00 0.00 3.02
862 895 1.433534 CTCAACGTTCCTCTTCTGGC 58.566 55.000 0.00 0.00 0.00 4.85
863 896 0.034896 TCAACGTTCCTCTTCTGGCC 59.965 55.000 0.00 0.00 0.00 5.36
864 897 0.250295 CAACGTTCCTCTTCTGGCCA 60.250 55.000 4.71 4.71 0.00 5.36
865 898 0.250338 AACGTTCCTCTTCTGGCCAC 60.250 55.000 0.00 0.00 0.00 5.01
866 899 1.122019 ACGTTCCTCTTCTGGCCACT 61.122 55.000 0.00 0.00 0.00 4.00
885 921 5.734503 GCCACTCTTTGTTTCTTCTTTCTGG 60.735 44.000 0.00 0.00 0.00 3.86
924 963 4.782691 TGGTTCATATGTGAGGAGGAAAGA 59.217 41.667 1.90 0.00 35.39 2.52
947 990 2.177394 TGGAACGTAGCATGCTGAAA 57.823 45.000 30.42 7.62 0.00 2.69
988 1031 4.062293 GGTTTAAAACAACCCCAATCTGC 58.938 43.478 0.00 0.00 40.53 4.26
1126 1204 1.736681 GCTGCACTTCACAAGATCCTC 59.263 52.381 0.00 0.00 0.00 3.71
1146 1224 7.321745 TCCTCTTCTTTCAGTTCAAAAGTTC 57.678 36.000 0.00 0.00 35.64 3.01
1205 1291 5.854010 AAAAACTGTCCTCCCTTTTCTTC 57.146 39.130 0.00 0.00 0.00 2.87
1304 1391 7.698130 GTCAGTCAATATGCCATTTTTACACTC 59.302 37.037 0.00 0.00 0.00 3.51
1324 1411 4.102524 ACTCCCACCATCGCATAAAGATTA 59.897 41.667 0.00 0.00 0.00 1.75
1392 1493 0.110419 TTCTGTTTCCGCGCATTTCG 60.110 50.000 8.75 0.00 42.12 3.46
1454 1564 7.907045 GCTGATACAATGTTCTGAACTTACATG 59.093 37.037 20.18 11.99 33.10 3.21
1551 1666 5.622770 ATTAAGTCTACCCTGTTTTTGCG 57.377 39.130 0.00 0.00 0.00 4.85
1557 1672 0.751643 ACCCTGTTTTTGCGACTGCT 60.752 50.000 0.00 0.00 43.34 4.24
1600 1715 2.807967 TGATTGACGAAGCAGAAACTGG 59.192 45.455 0.00 0.00 31.21 4.00
1610 1725 2.156098 AGAAACTGGGGAGCAGCCA 61.156 57.895 0.00 0.00 38.95 4.75
1661 1776 1.408453 CGATGTTCCCTACCCCTCCC 61.408 65.000 0.00 0.00 0.00 4.30
1682 1806 3.307691 CCGGGTATGATGTGGCAATATCT 60.308 47.826 12.47 3.66 0.00 1.98
1960 2153 0.401738 CCCAAGAGGACAGCCAAGAA 59.598 55.000 0.00 0.00 38.24 2.52
1973 2166 1.302832 CAAGAAGGTTCGGCAGGCT 60.303 57.895 0.00 0.00 0.00 4.58
1990 2183 2.360138 CTGGAGACTCCACTGCAGT 58.640 57.895 20.74 15.25 46.25 4.40
2638 2834 1.450312 GGATGGACACGGCCAAGAG 60.450 63.158 2.24 0.00 42.16 2.85
2747 2943 1.284982 CGAACCGTGCCACAAGAGAG 61.285 60.000 0.00 0.00 0.00 3.20
2877 3073 2.488545 GTGAAGCACTCGAGACCTCTTA 59.511 50.000 21.68 2.27 0.00 2.10
3095 3291 3.063485 GAGAGGTGTTCAGCTCAACTTC 58.937 50.000 26.33 15.28 32.63 3.01
3105 3301 2.872245 CAGCTCAACTTCGAGGTTTTCA 59.128 45.455 10.60 0.00 41.69 2.69
3111 3307 1.766496 ACTTCGAGGTTTTCAGGACCA 59.234 47.619 0.00 0.00 39.71 4.02
3128 3324 3.083997 AGAGACCGTGGATGGGGC 61.084 66.667 0.00 0.00 0.00 5.80
3256 3452 2.223688 CCTTTCGCACAACATGTCCAAA 60.224 45.455 0.00 0.00 0.00 3.28
3340 3536 3.594134 CCACAGCTGAGAGGTTTAAGAG 58.406 50.000 23.35 0.00 0.00 2.85
3341 3537 3.259374 CCACAGCTGAGAGGTTTAAGAGA 59.741 47.826 23.35 0.00 0.00 3.10
3450 3646 5.476091 TGTGCAATATGACCATACCGATA 57.524 39.130 0.00 0.00 0.00 2.92
3630 3826 4.511826 GTCGAGGTTCTTTCTGACACAAAT 59.488 41.667 0.00 0.00 0.00 2.32
3641 3837 1.472082 TGACACAAATTATGCTGGGCG 59.528 47.619 0.00 0.00 0.00 6.13
3691 3905 8.478877 TCATTATCTCTGTTCCTTCTAGGTTTC 58.521 37.037 0.00 0.00 36.53 2.78
3712 3926 4.571919 TCCCGGTCATGTTTAACAAGTAG 58.428 43.478 0.66 0.00 0.00 2.57
3715 3929 5.349543 CCCGGTCATGTTTAACAAGTAGTAC 59.650 44.000 0.66 0.00 0.00 2.73
3934 4190 8.191534 AGTCATACAACAGTAAGACTAAACCT 57.808 34.615 10.67 0.00 42.02 3.50
3940 4196 3.070590 ACAGTAAGACTAAACCTGCCGTT 59.929 43.478 0.00 0.00 35.70 4.44
4013 4270 2.375146 CCTGGGCCTAATACCAAACAC 58.625 52.381 4.53 0.00 36.09 3.32
4075 4332 1.305465 TAGCCACTTGCCGGGTCTA 60.305 57.895 2.18 0.00 42.71 2.59
4173 4430 0.955428 GCATCAACCTTGCTCGGTCA 60.955 55.000 0.00 0.00 35.89 4.02
4228 4485 3.918253 TTCCTCCCTGCGCGCAAAT 62.918 57.895 35.50 0.00 0.00 2.32
4289 4546 0.036164 ATGCTGCGAAGTACCACCAA 59.964 50.000 0.00 0.00 0.00 3.67
4467 4724 0.877071 CTGCTCCACAAACGATGCTT 59.123 50.000 0.00 0.00 0.00 3.91
4544 4802 3.647771 GGTTTCCCCCGGAGCAGT 61.648 66.667 0.73 0.00 31.21 4.40
4577 4835 3.424039 CGACAGTAGTTACACGACGATGT 60.424 47.826 0.00 5.07 36.56 3.06
4603 4861 1.067635 TCAAGGTAACGGCGTAGAACC 60.068 52.381 23.71 23.71 46.39 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.834168 ATTGTCTTACAACCCAATCGAAAT 57.166 33.333 0.00 0.00 41.40 2.17
1 2 6.642707 AATTGTCTTACAACCCAATCGAAA 57.357 33.333 0.00 0.00 41.40 3.46
2 3 6.263392 TCAAATTGTCTTACAACCCAATCGAA 59.737 34.615 0.00 0.00 41.40 3.71
3 4 5.765677 TCAAATTGTCTTACAACCCAATCGA 59.234 36.000 0.00 0.00 41.40 3.59
4 5 6.007936 TCAAATTGTCTTACAACCCAATCG 57.992 37.500 0.00 0.00 41.40 3.34
6 7 9.874205 CAATATCAAATTGTCTTACAACCCAAT 57.126 29.630 0.00 0.00 41.40 3.16
7 8 8.865090 ACAATATCAAATTGTCTTACAACCCAA 58.135 29.630 0.00 0.00 41.40 4.12
8 9 8.415950 ACAATATCAAATTGTCTTACAACCCA 57.584 30.769 0.00 0.00 41.40 4.51
9 10 9.705290 AAACAATATCAAATTGTCTTACAACCC 57.295 29.630 4.01 0.00 41.40 4.11
25 26 9.322773 TGTTTGCATGAAAAGAAAACAATATCA 57.677 25.926 0.00 0.00 37.68 2.15
32 33 9.305110 CGAAATATGTTTGCATGAAAAGAAAAC 57.695 29.630 0.00 0.00 36.58 2.43
33 34 9.254133 TCGAAATATGTTTGCATGAAAAGAAAA 57.746 25.926 0.00 0.00 36.58 2.29
34 35 8.809159 TCGAAATATGTTTGCATGAAAAGAAA 57.191 26.923 0.00 0.00 36.58 2.52
35 36 8.984891 ATCGAAATATGTTTGCATGAAAAGAA 57.015 26.923 0.00 0.00 36.58 2.52
36 37 8.862074 CAATCGAAATATGTTTGCATGAAAAGA 58.138 29.630 0.00 0.00 36.58 2.52
37 38 8.111836 CCAATCGAAATATGTTTGCATGAAAAG 58.888 33.333 0.00 0.00 36.58 2.27
38 39 7.064371 CCCAATCGAAATATGTTTGCATGAAAA 59.936 33.333 0.00 0.00 36.58 2.29
39 40 6.534436 CCCAATCGAAATATGTTTGCATGAAA 59.466 34.615 0.00 0.00 36.58 2.69
40 41 6.041511 CCCAATCGAAATATGTTTGCATGAA 58.958 36.000 0.00 0.00 36.58 2.57
41 42 5.126869 ACCCAATCGAAATATGTTTGCATGA 59.873 36.000 0.00 0.00 36.58 3.07
42 43 5.350633 ACCCAATCGAAATATGTTTGCATG 58.649 37.500 0.00 0.00 36.58 4.06
43 44 5.596836 ACCCAATCGAAATATGTTTGCAT 57.403 34.783 0.00 0.00 39.03 3.96
44 45 5.167121 CAACCCAATCGAAATATGTTTGCA 58.833 37.500 0.00 0.00 0.00 4.08
45 46 5.167845 ACAACCCAATCGAAATATGTTTGC 58.832 37.500 0.00 0.00 0.00 3.68
46 47 8.749841 TTTACAACCCAATCGAAATATGTTTG 57.250 30.769 0.00 0.00 0.00 2.93
47 48 8.798402 TCTTTACAACCCAATCGAAATATGTTT 58.202 29.630 0.00 0.00 0.00 2.83
48 49 8.241367 GTCTTTACAACCCAATCGAAATATGTT 58.759 33.333 0.00 0.00 0.00 2.71
49 50 7.610305 AGTCTTTACAACCCAATCGAAATATGT 59.390 33.333 0.00 0.00 0.00 2.29
50 51 7.985476 AGTCTTTACAACCCAATCGAAATATG 58.015 34.615 0.00 0.00 0.00 1.78
51 52 9.847224 ATAGTCTTTACAACCCAATCGAAATAT 57.153 29.630 0.00 0.00 0.00 1.28
52 53 9.675464 AATAGTCTTTACAACCCAATCGAAATA 57.325 29.630 0.00 0.00 0.00 1.40
53 54 8.575649 AATAGTCTTTACAACCCAATCGAAAT 57.424 30.769 0.00 0.00 0.00 2.17
54 55 7.989416 AATAGTCTTTACAACCCAATCGAAA 57.011 32.000 0.00 0.00 0.00 3.46
55 56 7.662258 TCAAATAGTCTTTACAACCCAATCGAA 59.338 33.333 0.00 0.00 0.00 3.71
56 57 7.162761 TCAAATAGTCTTTACAACCCAATCGA 58.837 34.615 0.00 0.00 0.00 3.59
57 58 7.333423 TCTCAAATAGTCTTTACAACCCAATCG 59.667 37.037 0.00 0.00 0.00 3.34
58 59 8.561738 TCTCAAATAGTCTTTACAACCCAATC 57.438 34.615 0.00 0.00 0.00 2.67
59 60 7.121315 GCTCTCAAATAGTCTTTACAACCCAAT 59.879 37.037 0.00 0.00 0.00 3.16
60 61 6.430000 GCTCTCAAATAGTCTTTACAACCCAA 59.570 38.462 0.00 0.00 0.00 4.12
61 62 5.938125 GCTCTCAAATAGTCTTTACAACCCA 59.062 40.000 0.00 0.00 0.00 4.51
62 63 6.174049 AGCTCTCAAATAGTCTTTACAACCC 58.826 40.000 0.00 0.00 0.00 4.11
63 64 8.821894 CATAGCTCTCAAATAGTCTTTACAACC 58.178 37.037 0.00 0.00 0.00 3.77
64 65 9.372369 ACATAGCTCTCAAATAGTCTTTACAAC 57.628 33.333 0.00 0.00 0.00 3.32
65 66 9.944376 AACATAGCTCTCAAATAGTCTTTACAA 57.056 29.630 0.00 0.00 0.00 2.41
66 67 9.944376 AAACATAGCTCTCAAATAGTCTTTACA 57.056 29.630 0.00 0.00 0.00 2.41
69 70 9.678260 ATCAAACATAGCTCTCAAATAGTCTTT 57.322 29.630 0.00 0.00 0.00 2.52
70 71 9.678260 AATCAAACATAGCTCTCAAATAGTCTT 57.322 29.630 0.00 0.00 0.00 3.01
71 72 9.678260 AAATCAAACATAGCTCTCAAATAGTCT 57.322 29.630 0.00 0.00 0.00 3.24
72 73 9.713740 CAAATCAAACATAGCTCTCAAATAGTC 57.286 33.333 0.00 0.00 0.00 2.59
73 74 9.453572 TCAAATCAAACATAGCTCTCAAATAGT 57.546 29.630 0.00 0.00 0.00 2.12
76 77 8.031277 GGTTCAAATCAAACATAGCTCTCAAAT 58.969 33.333 0.00 0.00 0.00 2.32
77 78 7.014134 TGGTTCAAATCAAACATAGCTCTCAAA 59.986 33.333 0.00 0.00 0.00 2.69
78 79 6.489700 TGGTTCAAATCAAACATAGCTCTCAA 59.510 34.615 0.00 0.00 0.00 3.02
79 80 6.003326 TGGTTCAAATCAAACATAGCTCTCA 58.997 36.000 0.00 0.00 0.00 3.27
80 81 6.500684 TGGTTCAAATCAAACATAGCTCTC 57.499 37.500 0.00 0.00 0.00 3.20
81 82 7.472334 AATGGTTCAAATCAAACATAGCTCT 57.528 32.000 0.00 0.00 32.18 4.09
82 83 7.814107 TGAAATGGTTCAAATCAAACATAGCTC 59.186 33.333 0.00 0.00 40.87 4.09
83 84 7.669427 TGAAATGGTTCAAATCAAACATAGCT 58.331 30.769 0.00 0.00 40.87 3.32
84 85 7.887996 TGAAATGGTTCAAATCAAACATAGC 57.112 32.000 0.00 0.00 40.87 2.97
87 88 8.885722 GCATATGAAATGGTTCAAATCAAACAT 58.114 29.630 6.97 0.00 46.66 2.71
88 89 7.876582 TGCATATGAAATGGTTCAAATCAAACA 59.123 29.630 6.97 0.00 46.66 2.83
89 90 8.254178 TGCATATGAAATGGTTCAAATCAAAC 57.746 30.769 6.97 0.00 46.66 2.93
90 91 9.100554 GATGCATATGAAATGGTTCAAATCAAA 57.899 29.630 6.97 0.00 46.66 2.69
91 92 8.258708 TGATGCATATGAAATGGTTCAAATCAA 58.741 29.630 6.97 0.00 46.66 2.57
92 93 7.783042 TGATGCATATGAAATGGTTCAAATCA 58.217 30.769 6.97 0.00 46.66 2.57
93 94 8.651391 TTGATGCATATGAAATGGTTCAAATC 57.349 30.769 6.97 0.00 46.66 2.17
94 95 9.621629 AATTGATGCATATGAAATGGTTCAAAT 57.378 25.926 6.97 0.00 46.66 2.32
95 96 9.451002 AAATTGATGCATATGAAATGGTTCAAA 57.549 25.926 6.97 0.00 46.66 2.69
96 97 9.100554 GAAATTGATGCATATGAAATGGTTCAA 57.899 29.630 6.97 2.95 46.66 2.69
98 99 8.651391 TGAAATTGATGCATATGAAATGGTTC 57.349 30.769 6.97 2.19 0.00 3.62
99 100 9.621629 AATGAAATTGATGCATATGAAATGGTT 57.378 25.926 6.97 0.00 33.44 3.67
100 101 9.621629 AAATGAAATTGATGCATATGAAATGGT 57.378 25.926 6.97 0.00 36.10 3.55
111 112 9.356433 CACAGTACATAAAATGAAATTGATGCA 57.644 29.630 0.00 0.00 36.10 3.96
112 113 8.323140 GCACAGTACATAAAATGAAATTGATGC 58.677 33.333 0.00 0.00 36.10 3.91
113 114 9.577110 AGCACAGTACATAAAATGAAATTGATG 57.423 29.630 0.00 0.00 36.10 3.07
114 115 9.577110 CAGCACAGTACATAAAATGAAATTGAT 57.423 29.630 0.00 0.00 36.10 2.57
115 116 8.028354 CCAGCACAGTACATAAAATGAAATTGA 58.972 33.333 0.00 0.00 36.10 2.57
116 117 7.276218 CCCAGCACAGTACATAAAATGAAATTG 59.724 37.037 0.00 0.00 36.10 2.32
117 118 7.178274 TCCCAGCACAGTACATAAAATGAAATT 59.822 33.333 0.00 0.00 38.98 1.82
118 119 6.663093 TCCCAGCACAGTACATAAAATGAAAT 59.337 34.615 0.00 0.00 0.00 2.17
119 120 6.007076 TCCCAGCACAGTACATAAAATGAAA 58.993 36.000 0.00 0.00 0.00 2.69
120 121 5.565509 TCCCAGCACAGTACATAAAATGAA 58.434 37.500 0.00 0.00 0.00 2.57
121 122 5.045942 TCTCCCAGCACAGTACATAAAATGA 60.046 40.000 0.00 0.00 0.00 2.57
122 123 5.185454 TCTCCCAGCACAGTACATAAAATG 58.815 41.667 0.00 0.00 0.00 2.32
123 124 5.435686 TCTCCCAGCACAGTACATAAAAT 57.564 39.130 0.00 0.00 0.00 1.82
124 125 4.901197 TCTCCCAGCACAGTACATAAAA 57.099 40.909 0.00 0.00 0.00 1.52
125 126 4.575885 GTTCTCCCAGCACAGTACATAAA 58.424 43.478 0.00 0.00 0.00 1.40
126 127 3.368013 CGTTCTCCCAGCACAGTACATAA 60.368 47.826 0.00 0.00 0.00 1.90
127 128 2.165641 CGTTCTCCCAGCACAGTACATA 59.834 50.000 0.00 0.00 0.00 2.29
128 129 1.066858 CGTTCTCCCAGCACAGTACAT 60.067 52.381 0.00 0.00 0.00 2.29
129 130 0.317160 CGTTCTCCCAGCACAGTACA 59.683 55.000 0.00 0.00 0.00 2.90
130 131 0.389948 CCGTTCTCCCAGCACAGTAC 60.390 60.000 0.00 0.00 0.00 2.73
131 132 1.972198 CCGTTCTCCCAGCACAGTA 59.028 57.895 0.00 0.00 0.00 2.74
132 133 2.743718 CCGTTCTCCCAGCACAGT 59.256 61.111 0.00 0.00 0.00 3.55
133 134 2.743928 GCCGTTCTCCCAGCACAG 60.744 66.667 0.00 0.00 0.00 3.66
134 135 4.680237 CGCCGTTCTCCCAGCACA 62.680 66.667 0.00 0.00 0.00 4.57
135 136 4.373116 TCGCCGTTCTCCCAGCAC 62.373 66.667 0.00 0.00 0.00 4.40
136 137 4.069232 CTCGCCGTTCTCCCAGCA 62.069 66.667 0.00 0.00 0.00 4.41
137 138 3.082579 ATCTCGCCGTTCTCCCAGC 62.083 63.158 0.00 0.00 0.00 4.85
138 139 1.227089 CATCTCGCCGTTCTCCCAG 60.227 63.158 0.00 0.00 0.00 4.45
139 140 2.892640 CATCTCGCCGTTCTCCCA 59.107 61.111 0.00 0.00 0.00 4.37
140 141 2.586357 GCATCTCGCCGTTCTCCC 60.586 66.667 0.00 0.00 32.94 4.30
141 142 2.956964 CGCATCTCGCCGTTCTCC 60.957 66.667 0.00 0.00 37.30 3.71
142 143 2.956964 CCGCATCTCGCCGTTCTC 60.957 66.667 0.00 0.00 37.30 2.87
149 150 3.272334 ATTTCGGCCGCATCTCGC 61.272 61.111 23.51 0.00 36.73 5.03
150 151 2.628106 CATTTCGGCCGCATCTCG 59.372 61.111 23.51 2.10 38.08 4.04
151 152 2.329339 GCATTTCGGCCGCATCTC 59.671 61.111 23.51 5.45 0.00 2.75
152 153 2.438254 TGCATTTCGGCCGCATCT 60.438 55.556 23.51 1.22 0.00 2.90
153 154 2.025156 CTGCATTTCGGCCGCATC 59.975 61.111 23.51 8.01 34.63 3.91
154 155 4.197498 GCTGCATTTCGGCCGCAT 62.197 61.111 23.51 12.50 42.63 4.73
162 163 4.759096 AACGCGCGGCTGCATTTC 62.759 61.111 35.22 2.12 42.97 2.17
188 189 2.823829 GATTGTGGATGCGACGGCC 61.824 63.158 0.00 0.00 38.85 6.13
189 190 2.709475 GATTGTGGATGCGACGGC 59.291 61.111 0.00 0.00 40.52 5.68
190 191 3.409856 GGATTGTGGATGCGACGG 58.590 61.111 0.00 0.00 0.00 4.79
195 196 1.869767 GTCTGATCGGATTGTGGATGC 59.130 52.381 7.68 0.00 0.00 3.91
196 197 2.868583 GTGTCTGATCGGATTGTGGATG 59.131 50.000 7.68 0.00 0.00 3.51
197 198 2.481969 CGTGTCTGATCGGATTGTGGAT 60.482 50.000 7.68 0.00 0.00 3.41
198 199 1.135112 CGTGTCTGATCGGATTGTGGA 60.135 52.381 7.68 0.00 0.00 4.02
199 200 1.280982 CGTGTCTGATCGGATTGTGG 58.719 55.000 7.68 0.00 0.00 4.17
207 208 0.179100 AATGAGGCCGTGTCTGATCG 60.179 55.000 0.00 0.00 0.00 3.69
208 209 2.890808 TAATGAGGCCGTGTCTGATC 57.109 50.000 0.00 0.00 0.00 2.92
209 210 2.700371 TGATAATGAGGCCGTGTCTGAT 59.300 45.455 0.00 0.00 0.00 2.90
210 211 2.107366 TGATAATGAGGCCGTGTCTGA 58.893 47.619 0.00 0.00 0.00 3.27
211 212 2.602257 TGATAATGAGGCCGTGTCTG 57.398 50.000 0.00 0.00 0.00 3.51
212 213 2.037772 GGATGATAATGAGGCCGTGTCT 59.962 50.000 0.00 0.00 0.00 3.41
213 214 2.417719 GGATGATAATGAGGCCGTGTC 58.582 52.381 0.00 0.00 0.00 3.67
214 215 1.072331 GGGATGATAATGAGGCCGTGT 59.928 52.381 0.00 0.00 0.00 4.49
215 216 1.072173 TGGGATGATAATGAGGCCGTG 59.928 52.381 0.00 0.00 0.00 4.94
216 217 1.434188 TGGGATGATAATGAGGCCGT 58.566 50.000 0.00 0.00 0.00 5.68
217 218 2.554032 GTTTGGGATGATAATGAGGCCG 59.446 50.000 0.00 0.00 0.00 6.13
218 219 3.565307 TGTTTGGGATGATAATGAGGCC 58.435 45.455 0.00 0.00 0.00 5.19
219 220 5.105392 TGTTTGTTTGGGATGATAATGAGGC 60.105 40.000 0.00 0.00 0.00 4.70
220 221 6.528537 TGTTTGTTTGGGATGATAATGAGG 57.471 37.500 0.00 0.00 0.00 3.86
221 222 8.830201 TTTTGTTTGTTTGGGATGATAATGAG 57.170 30.769 0.00 0.00 0.00 2.90
222 223 9.434420 GATTTTGTTTGTTTGGGATGATAATGA 57.566 29.630 0.00 0.00 0.00 2.57
223 224 8.667463 GGATTTTGTTTGTTTGGGATGATAATG 58.333 33.333 0.00 0.00 0.00 1.90
224 225 8.381636 TGGATTTTGTTTGTTTGGGATGATAAT 58.618 29.630 0.00 0.00 0.00 1.28
225 226 7.739825 TGGATTTTGTTTGTTTGGGATGATAA 58.260 30.769 0.00 0.00 0.00 1.75
226 227 7.234371 TCTGGATTTTGTTTGTTTGGGATGATA 59.766 33.333 0.00 0.00 0.00 2.15
227 228 6.043012 TCTGGATTTTGTTTGTTTGGGATGAT 59.957 34.615 0.00 0.00 0.00 2.45
228 229 5.365025 TCTGGATTTTGTTTGTTTGGGATGA 59.635 36.000 0.00 0.00 0.00 2.92
229 230 5.466393 GTCTGGATTTTGTTTGTTTGGGATG 59.534 40.000 0.00 0.00 0.00 3.51
230 231 5.130145 TGTCTGGATTTTGTTTGTTTGGGAT 59.870 36.000 0.00 0.00 0.00 3.85
231 232 4.467795 TGTCTGGATTTTGTTTGTTTGGGA 59.532 37.500 0.00 0.00 0.00 4.37
232 233 4.764172 TGTCTGGATTTTGTTTGTTTGGG 58.236 39.130 0.00 0.00 0.00 4.12
233 234 6.734104 TTTGTCTGGATTTTGTTTGTTTGG 57.266 33.333 0.00 0.00 0.00 3.28
234 235 7.118724 CGATTTGTCTGGATTTTGTTTGTTTG 58.881 34.615 0.00 0.00 0.00 2.93
235 236 6.257630 CCGATTTGTCTGGATTTTGTTTGTTT 59.742 34.615 0.00 0.00 0.00 2.83
236 237 5.752955 CCGATTTGTCTGGATTTTGTTTGTT 59.247 36.000 0.00 0.00 0.00 2.83
237 238 5.068460 TCCGATTTGTCTGGATTTTGTTTGT 59.932 36.000 0.00 0.00 0.00 2.83
238 239 5.402270 GTCCGATTTGTCTGGATTTTGTTTG 59.598 40.000 0.00 0.00 33.63 2.93
239 240 5.528870 GTCCGATTTGTCTGGATTTTGTTT 58.471 37.500 0.00 0.00 33.63 2.83
240 241 4.320202 CGTCCGATTTGTCTGGATTTTGTT 60.320 41.667 0.00 0.00 33.63 2.83
241 242 3.188460 CGTCCGATTTGTCTGGATTTTGT 59.812 43.478 0.00 0.00 33.63 2.83
242 243 3.188460 ACGTCCGATTTGTCTGGATTTTG 59.812 43.478 0.00 0.00 33.63 2.44
243 244 3.408634 ACGTCCGATTTGTCTGGATTTT 58.591 40.909 0.00 0.00 33.63 1.82
244 245 3.000727 GACGTCCGATTTGTCTGGATTT 58.999 45.455 3.51 0.00 33.63 2.17
245 246 2.618053 GACGTCCGATTTGTCTGGATT 58.382 47.619 3.51 0.00 33.63 3.01
246 247 1.134788 GGACGTCCGATTTGTCTGGAT 60.135 52.381 20.85 0.00 33.63 3.41
247 248 0.245539 GGACGTCCGATTTGTCTGGA 59.754 55.000 20.85 0.00 33.21 3.86
248 249 0.037697 TGGACGTCCGATTTGTCTGG 60.038 55.000 28.70 0.00 39.43 3.86
249 250 2.010145 ATGGACGTCCGATTTGTCTG 57.990 50.000 28.70 0.00 39.43 3.51
250 251 2.762535 AATGGACGTCCGATTTGTCT 57.237 45.000 28.70 6.28 39.43 3.41
251 252 2.739913 TGAAATGGACGTCCGATTTGTC 59.260 45.455 31.71 23.87 39.43 3.18
252 253 2.742053 CTGAAATGGACGTCCGATTTGT 59.258 45.455 31.71 19.25 39.43 2.83
253 254 3.000041 TCTGAAATGGACGTCCGATTTG 59.000 45.455 31.71 23.42 39.43 2.32
254 255 3.328382 TCTGAAATGGACGTCCGATTT 57.672 42.857 29.19 29.19 39.43 2.17
255 256 3.198068 CATCTGAAATGGACGTCCGATT 58.802 45.455 28.70 24.42 39.43 3.34
256 257 2.483714 CCATCTGAAATGGACGTCCGAT 60.484 50.000 28.70 20.07 41.64 4.18
257 258 1.134818 CCATCTGAAATGGACGTCCGA 60.135 52.381 28.70 18.73 41.64 4.55
258 259 1.290203 CCATCTGAAATGGACGTCCG 58.710 55.000 28.70 13.92 41.64 4.79
259 260 1.017387 GCCATCTGAAATGGACGTCC 58.983 55.000 28.17 28.17 41.64 4.79
260 261 0.652592 CGCCATCTGAAATGGACGTC 59.347 55.000 7.13 7.13 41.64 4.34
261 262 1.369091 GCGCCATCTGAAATGGACGT 61.369 55.000 8.23 0.00 41.64 4.34
262 263 1.353103 GCGCCATCTGAAATGGACG 59.647 57.895 8.23 11.15 41.64 4.79
263 264 1.353103 CGCGCCATCTGAAATGGAC 59.647 57.895 0.00 0.00 41.64 4.02
264 265 0.676466 AACGCGCCATCTGAAATGGA 60.676 50.000 5.73 0.00 41.64 3.41
265 266 0.523968 CAACGCGCCATCTGAAATGG 60.524 55.000 5.73 0.00 41.99 3.16
266 267 0.523968 CCAACGCGCCATCTGAAATG 60.524 55.000 5.73 0.00 0.00 2.32
267 268 0.676466 TCCAACGCGCCATCTGAAAT 60.676 50.000 5.73 0.00 0.00 2.17
268 269 1.298157 CTCCAACGCGCCATCTGAAA 61.298 55.000 5.73 0.00 0.00 2.69
269 270 1.741401 CTCCAACGCGCCATCTGAA 60.741 57.895 5.73 0.00 0.00 3.02
270 271 2.125552 CTCCAACGCGCCATCTGA 60.126 61.111 5.73 0.00 0.00 3.27
271 272 2.034879 AACTCCAACGCGCCATCTG 61.035 57.895 5.73 0.00 0.00 2.90
272 273 2.034879 CAACTCCAACGCGCCATCT 61.035 57.895 5.73 0.00 0.00 2.90
273 274 2.480555 CAACTCCAACGCGCCATC 59.519 61.111 5.73 0.00 0.00 3.51
274 275 3.055719 CCAACTCCAACGCGCCAT 61.056 61.111 5.73 0.00 0.00 4.40
278 279 1.449601 ATAGCCCAACTCCAACGCG 60.450 57.895 3.53 3.53 0.00 6.01
279 280 0.676782 ACATAGCCCAACTCCAACGC 60.677 55.000 0.00 0.00 0.00 4.84
280 281 1.737793 GAACATAGCCCAACTCCAACG 59.262 52.381 0.00 0.00 0.00 4.10
281 282 1.737793 CGAACATAGCCCAACTCCAAC 59.262 52.381 0.00 0.00 0.00 3.77
282 283 1.349688 ACGAACATAGCCCAACTCCAA 59.650 47.619 0.00 0.00 0.00 3.53
283 284 0.981183 ACGAACATAGCCCAACTCCA 59.019 50.000 0.00 0.00 0.00 3.86
284 285 1.338769 ACACGAACATAGCCCAACTCC 60.339 52.381 0.00 0.00 0.00 3.85
285 286 2.094762 ACACGAACATAGCCCAACTC 57.905 50.000 0.00 0.00 0.00 3.01
286 287 3.906720 ATACACGAACATAGCCCAACT 57.093 42.857 0.00 0.00 0.00 3.16
287 288 3.064820 CCAATACACGAACATAGCCCAAC 59.935 47.826 0.00 0.00 0.00 3.77
288 289 3.055021 TCCAATACACGAACATAGCCCAA 60.055 43.478 0.00 0.00 0.00 4.12
289 290 2.502130 TCCAATACACGAACATAGCCCA 59.498 45.455 0.00 0.00 0.00 5.36
290 291 3.131396 CTCCAATACACGAACATAGCCC 58.869 50.000 0.00 0.00 0.00 5.19
291 292 3.555956 CACTCCAATACACGAACATAGCC 59.444 47.826 0.00 0.00 0.00 3.93
292 293 4.267928 GTCACTCCAATACACGAACATAGC 59.732 45.833 0.00 0.00 0.00 2.97
293 294 4.804139 GGTCACTCCAATACACGAACATAG 59.196 45.833 0.00 0.00 35.97 2.23
294 295 4.464951 AGGTCACTCCAATACACGAACATA 59.535 41.667 0.00 0.00 39.02 2.29
295 296 3.260884 AGGTCACTCCAATACACGAACAT 59.739 43.478 0.00 0.00 39.02 2.71
296 297 2.631062 AGGTCACTCCAATACACGAACA 59.369 45.455 0.00 0.00 39.02 3.18
297 298 3.314541 AGGTCACTCCAATACACGAAC 57.685 47.619 0.00 0.00 39.02 3.95
298 299 4.345859 AAAGGTCACTCCAATACACGAA 57.654 40.909 0.00 0.00 39.02 3.85
299 300 4.345859 AAAAGGTCACTCCAATACACGA 57.654 40.909 0.00 0.00 39.02 4.35
300 301 4.783242 CAAAAAGGTCACTCCAATACACG 58.217 43.478 0.00 0.00 39.02 4.49
301 302 4.546570 GCAAAAAGGTCACTCCAATACAC 58.453 43.478 0.00 0.00 39.02 2.90
302 303 3.572255 GGCAAAAAGGTCACTCCAATACA 59.428 43.478 0.00 0.00 39.02 2.29
303 304 3.572255 TGGCAAAAAGGTCACTCCAATAC 59.428 43.478 0.00 0.00 39.02 1.89
304 305 3.826157 CTGGCAAAAAGGTCACTCCAATA 59.174 43.478 0.00 0.00 39.02 1.90
305 306 2.629617 CTGGCAAAAAGGTCACTCCAAT 59.370 45.455 0.00 0.00 39.02 3.16
306 307 2.031120 CTGGCAAAAAGGTCACTCCAA 58.969 47.619 0.00 0.00 39.02 3.53
307 308 1.691196 CTGGCAAAAAGGTCACTCCA 58.309 50.000 0.00 0.00 39.02 3.86
408 419 3.958147 ATCCGTGCTGCTGGAACCG 62.958 63.158 16.10 2.78 37.90 4.44
409 420 2.045926 ATCCGTGCTGCTGGAACC 60.046 61.111 16.10 0.00 37.90 3.62
410 421 1.078848 AGATCCGTGCTGCTGGAAC 60.079 57.895 16.10 13.80 37.90 3.62
411 422 1.219124 GAGATCCGTGCTGCTGGAA 59.781 57.895 16.10 3.16 37.90 3.53
412 423 2.895680 GAGATCCGTGCTGCTGGA 59.104 61.111 14.84 14.84 38.95 3.86
413 424 2.584418 CGAGATCCGTGCTGCTGG 60.584 66.667 0.00 2.97 0.00 4.85
414 425 1.588403 CTCGAGATCCGTGCTGCTG 60.588 63.158 6.58 0.00 39.75 4.41
415 426 1.750780 TCTCGAGATCCGTGCTGCT 60.751 57.895 12.08 0.00 39.75 4.24
416 427 1.587613 GTCTCGAGATCCGTGCTGC 60.588 63.158 19.90 0.00 39.75 5.25
417 428 1.064946 GGTCTCGAGATCCGTGCTG 59.935 63.158 19.90 0.00 39.75 4.41
577 590 3.719646 TTGCCTGTGCTGTGCCACT 62.720 57.895 0.00 0.00 38.71 4.00
613 626 3.498071 ACAGGTGGGGTGGTGTGG 61.498 66.667 0.00 0.00 0.00 4.17
614 627 2.203337 CACAGGTGGGGTGGTGTG 60.203 66.667 0.00 0.00 34.77 3.82
724 751 1.818060 CAACAATGATTTGCCGGGAGA 59.182 47.619 2.18 0.00 36.22 3.71
735 762 3.006110 CACAAGAACCAGCCAACAATGAT 59.994 43.478 0.00 0.00 0.00 2.45
736 763 2.361757 CACAAGAACCAGCCAACAATGA 59.638 45.455 0.00 0.00 0.00 2.57
737 764 2.546373 CCACAAGAACCAGCCAACAATG 60.546 50.000 0.00 0.00 0.00 2.82
738 765 1.688197 CCACAAGAACCAGCCAACAAT 59.312 47.619 0.00 0.00 0.00 2.71
739 766 1.110442 CCACAAGAACCAGCCAACAA 58.890 50.000 0.00 0.00 0.00 2.83
740 767 0.033601 ACCACAAGAACCAGCCAACA 60.034 50.000 0.00 0.00 0.00 3.33
741 768 1.111277 AACCACAAGAACCAGCCAAC 58.889 50.000 0.00 0.00 0.00 3.77
742 769 1.754226 GAAACCACAAGAACCAGCCAA 59.246 47.619 0.00 0.00 0.00 4.52
743 770 1.398692 GAAACCACAAGAACCAGCCA 58.601 50.000 0.00 0.00 0.00 4.75
744 771 0.673985 GGAAACCACAAGAACCAGCC 59.326 55.000 0.00 0.00 0.00 4.85
745 772 1.692411 AGGAAACCACAAGAACCAGC 58.308 50.000 0.00 0.00 0.00 4.85
746 773 4.402474 AGAAAAGGAAACCACAAGAACCAG 59.598 41.667 0.00 0.00 0.00 4.00
747 774 4.159506 CAGAAAAGGAAACCACAAGAACCA 59.840 41.667 0.00 0.00 0.00 3.67
748 775 4.441495 CCAGAAAAGGAAACCACAAGAACC 60.441 45.833 0.00 0.00 0.00 3.62
749 776 4.682787 CCAGAAAAGGAAACCACAAGAAC 58.317 43.478 0.00 0.00 0.00 3.01
756 783 1.679153 GAACGCCAGAAAAGGAAACCA 59.321 47.619 0.00 0.00 0.00 3.67
758 785 3.372060 CAAGAACGCCAGAAAAGGAAAC 58.628 45.455 0.00 0.00 0.00 2.78
780 807 9.478768 GATCATCTAAAACCTAAAGCTACTACC 57.521 37.037 0.00 0.00 0.00 3.18
799 832 6.662865 ATTTCTCCACAGATACGATCATCT 57.337 37.500 0.00 0.00 35.60 2.90
823 856 1.202940 GGAACCCAGAAAAGAGTGGCT 60.203 52.381 0.00 0.00 31.85 4.75
827 860 3.744530 CGTTGAGGAACCCAGAAAAGAGT 60.745 47.826 0.00 0.00 0.00 3.24
828 861 2.808543 CGTTGAGGAACCCAGAAAAGAG 59.191 50.000 0.00 0.00 0.00 2.85
860 893 4.339530 AGAAAGAAGAAACAAAGAGTGGCC 59.660 41.667 0.00 0.00 0.00 5.36
862 895 5.734503 GCCAGAAAGAAGAAACAAAGAGTGG 60.735 44.000 0.00 0.00 0.00 4.00
863 896 5.277047 GCCAGAAAGAAGAAACAAAGAGTG 58.723 41.667 0.00 0.00 0.00 3.51
864 897 4.035675 CGCCAGAAAGAAGAAACAAAGAGT 59.964 41.667 0.00 0.00 0.00 3.24
865 898 4.273480 TCGCCAGAAAGAAGAAACAAAGAG 59.727 41.667 0.00 0.00 0.00 2.85
866 899 4.196193 TCGCCAGAAAGAAGAAACAAAGA 58.804 39.130 0.00 0.00 0.00 2.52
885 921 0.454196 ACCAAAAATGCCGGTATCGC 59.546 50.000 5.17 0.00 34.56 4.58
924 963 1.739466 CAGCATGCTACGTTCCATGTT 59.261 47.619 22.19 16.27 40.63 2.71
947 990 6.877611 AAACCGACAGAAAACACATCTATT 57.122 33.333 0.00 0.00 0.00 1.73
1043 1086 5.505173 AGAAACAGAGGAAAACACATGTG 57.495 39.130 24.25 24.25 0.00 3.21
1044 1087 6.530019 AAAGAAACAGAGGAAAACACATGT 57.470 33.333 0.00 0.00 0.00 3.21
1276 1363 5.643379 AAAAATGGCATATTGACTGACGT 57.357 34.783 0.00 0.00 0.00 4.34
1304 1391 5.964958 ATTAATCTTTATGCGATGGTGGG 57.035 39.130 0.00 0.00 0.00 4.61
1324 1411 7.201911 GCTTGTTGGCTAGGTGGAATTAATATT 60.202 37.037 0.00 0.00 0.00 1.28
1339 1426 4.551702 TTGATCACTAGCTTGTTGGCTA 57.448 40.909 0.00 0.00 42.97 3.93
1392 1493 7.750903 GGACAAAACTGTATTATCTTGTGAAGC 59.249 37.037 0.00 0.00 0.00 3.86
1454 1564 6.604735 ACGAAGAATAGCATCCATGTAAAC 57.395 37.500 0.00 0.00 0.00 2.01
1494 1604 9.006839 GCTGATGTATATGGAAGATCAATCAAA 57.993 33.333 0.00 0.00 0.00 2.69
1495 1605 8.380867 AGCTGATGTATATGGAAGATCAATCAA 58.619 33.333 0.00 0.00 0.00 2.57
1496 1606 7.914859 AGCTGATGTATATGGAAGATCAATCA 58.085 34.615 0.00 0.00 0.00 2.57
1497 1607 9.531942 CTAGCTGATGTATATGGAAGATCAATC 57.468 37.037 0.00 0.00 0.00 2.67
1498 1608 7.986320 GCTAGCTGATGTATATGGAAGATCAAT 59.014 37.037 7.70 0.00 0.00 2.57
1551 1666 2.419297 CCATGGTGAACTCCTAGCAGTC 60.419 54.545 2.57 0.00 0.00 3.51
1557 1672 1.879575 CTCCCCATGGTGAACTCCTA 58.120 55.000 11.73 0.00 0.00 2.94
1600 1715 4.416738 GGTCCAGTGGCTGCTCCC 62.417 72.222 3.51 0.00 0.00 4.30
1610 1725 1.002134 CAATGGCTTCGGGTCCAGT 60.002 57.895 0.00 0.00 35.57 4.00
1661 1776 3.686241 CAGATATTGCCACATCATACCCG 59.314 47.826 0.00 0.00 0.00 5.28
1682 1806 3.843619 TGATGTAGAAGAATGGTGGGTCA 59.156 43.478 0.00 0.00 0.00 4.02
1873 2066 2.028112 TCATCCGACAGTTCCTCTTTGG 60.028 50.000 0.00 0.00 37.10 3.28
1960 2153 3.710722 CTCCAGCCTGCCGAACCT 61.711 66.667 0.00 0.00 0.00 3.50
1973 2166 0.469892 TGACTGCAGTGGAGTCTCCA 60.470 55.000 35.31 18.15 45.98 3.86
1990 2183 0.249868 CGGTCTCTGCTTGGTGTTGA 60.250 55.000 0.00 0.00 0.00 3.18
2189 2382 3.057946 GGCTGTTGATCTTCAGGTTGTTC 60.058 47.826 15.54 2.82 32.94 3.18
2399 2595 1.517832 CAGGGTGTCGGTCTCATCC 59.482 63.158 0.00 0.00 36.42 3.51
2638 2834 2.443957 CTTGAACACGCTGAACCCGC 62.444 60.000 0.00 0.00 0.00 6.13
2747 2943 0.672342 GATCCAGCACCATGGCATTC 59.328 55.000 13.04 0.00 40.41 2.67
2877 3073 0.698238 TGCAATGGCCTGTTCCTACT 59.302 50.000 3.32 0.00 40.13 2.57
3095 3291 1.618837 TCTCTGGTCCTGAAAACCTCG 59.381 52.381 0.00 0.00 37.69 4.63
3105 3301 0.972983 CATCCACGGTCTCTGGTCCT 60.973 60.000 0.00 0.00 0.00 3.85
3111 3307 3.083997 GCCCCATCCACGGTCTCT 61.084 66.667 0.00 0.00 0.00 3.10
3128 3324 2.872388 CGGGTCCCATGATCGGAGG 61.872 68.421 9.12 0.00 0.00 4.30
3256 3452 4.265073 GTTCCATCTTACAGCCTTGTCAT 58.735 43.478 0.00 0.00 38.76 3.06
3267 3463 1.004277 TGCACCCAGGTTCCATCTTAC 59.996 52.381 0.00 0.00 0.00 2.34
3296 3492 3.507162 TCATCTGCACCTTTTTCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
3340 3536 2.924290 GCACTTATGACGACAGGAAGTC 59.076 50.000 12.68 6.91 44.02 3.01
3341 3537 2.299013 TGCACTTATGACGACAGGAAGT 59.701 45.455 10.65 10.65 36.92 3.01
3450 3646 6.291377 AGAACATGATATGCGGATAACTGTT 58.709 36.000 16.41 16.41 0.00 3.16
3630 3826 2.088423 CCTTGTTTACGCCCAGCATAA 58.912 47.619 0.00 0.00 0.00 1.90
3641 3837 9.048446 TGACATCTGTTTAGTTACCTTGTTTAC 57.952 33.333 0.00 0.00 0.00 2.01
3691 3905 4.320870 ACTACTTGTTAAACATGACCGGG 58.679 43.478 6.32 0.00 0.00 5.73
3732 3986 7.275560 TCAAGTGACGAGTAATGACAATACATG 59.724 37.037 3.58 0.00 0.00 3.21
3750 4004 9.941664 CTAATAAATCCATCAACATCAAGTGAC 57.058 33.333 0.00 0.00 0.00 3.67
3899 4155 8.967664 TTACTGTTGTATGACTTTGTAAGGTT 57.032 30.769 0.00 0.00 0.00 3.50
3932 4188 2.124122 GTTTGTTGCTTAAACGGCAGG 58.876 47.619 0.00 0.00 42.10 4.85
3934 4190 2.164624 ACAGTTTGTTGCTTAAACGGCA 59.835 40.909 9.59 0.00 42.10 5.69
4013 4270 1.135689 GTTAGGCTTGGTTGCGATGTG 60.136 52.381 0.00 0.00 0.00 3.21
4075 4332 3.941188 CGGACCAGTGTGTGCCCT 61.941 66.667 0.00 0.00 0.00 5.19
4173 4430 1.226603 GTGGCGTCGACGATAGCTT 60.227 57.895 39.74 0.00 43.02 3.74
4210 4467 2.529454 TATTTGCGCGCAGGGAGGAA 62.529 55.000 34.25 24.11 46.37 3.36
4228 4485 4.476410 CCGCGACGTGCTCAGCTA 62.476 66.667 8.23 0.00 43.27 3.32
4277 4534 1.202557 TGTGTCGGTTGGTGGTACTTC 60.203 52.381 0.00 0.00 0.00 3.01
4289 4546 0.249911 GGACTTCAAGCTGTGTCGGT 60.250 55.000 0.00 0.00 0.00 4.69
4339 4596 0.036164 ACGCTTTGTCATGCCTGGTA 59.964 50.000 0.00 0.00 0.00 3.25
4467 4724 1.000607 CGGTGTCGTTTCTCTCTTGGA 60.001 52.381 0.00 0.00 0.00 3.53
4544 4802 1.002430 ACTACTGTCGACCCACTCGTA 59.998 52.381 14.12 4.29 43.45 3.43
4577 4835 1.274167 ACGCCGTTACCTTGATGAAGA 59.726 47.619 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.