Multiple sequence alignment - TraesCS5D01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G151600 chr5D 100.000 2576 0 0 1 2576 240840584 240843159 0.000000e+00 4758
1 TraesCS5D01G151600 chr5D 87.195 164 16 5 2281 2442 362962794 362962954 5.660000e-42 182
2 TraesCS5D01G151600 chr5D 84.940 166 21 4 2281 2445 390346275 390346113 5.700000e-37 165
3 TraesCS5D01G151600 chr5B 90.723 1466 75 25 665 2095 262840747 262839308 0.000000e+00 1897
4 TraesCS5D01G151600 chr5A 88.577 1532 79 30 610 2097 312926096 312924617 0.000000e+00 1772
5 TraesCS5D01G151600 chr3D 99.018 611 4 2 1 610 491628363 491627754 0.000000e+00 1094
6 TraesCS5D01G151600 chr3D 98.854 611 5 2 1 610 30055797 30055188 0.000000e+00 1088
7 TraesCS5D01G151600 chr3D 98.854 611 5 2 1 610 32734095 32733486 0.000000e+00 1088
8 TraesCS5D01G151600 chr3D 98.854 611 5 2 1 610 46547358 46546749 0.000000e+00 1088
9 TraesCS5D01G151600 chr3D 98.854 611 5 2 1 610 367315137 367314528 0.000000e+00 1088
10 TraesCS5D01G151600 chr3D 98.691 611 6 2 1 610 391606097 391606706 0.000000e+00 1083
11 TraesCS5D01G151600 chr7D 98.701 616 5 3 1 614 101142317 101141703 0.000000e+00 1090
12 TraesCS5D01G151600 chr7D 98.854 611 5 2 1 610 89273125 89273734 0.000000e+00 1088
13 TraesCS5D01G151600 chr7D 85.366 164 20 4 2281 2442 105839415 105839576 1.590000e-37 167
14 TraesCS5D01G151600 chr7D 85.276 163 20 4 2281 2442 163465117 163465276 5.700000e-37 165
15 TraesCS5D01G151600 chr7D 84.940 166 21 4 2281 2445 413878663 413878501 5.700000e-37 165
16 TraesCS5D01G151600 chr7D 80.851 141 22 3 2096 2232 257106960 257106821 3.510000e-19 106
17 TraesCS5D01G151600 chr1D 98.856 612 4 3 1 611 460320584 460321193 0.000000e+00 1088
18 TraesCS5D01G151600 chr1D 84.337 166 22 4 2281 2445 412791327 412791165 2.650000e-35 159
19 TraesCS5D01G151600 chr6D 83.333 264 34 6 2281 2538 97240124 97240383 4.290000e-58 235
20 TraesCS5D01G151600 chr2D 84.940 166 22 3 2281 2445 103080578 103080415 5.700000e-37 165
21 TraesCS5D01G151600 chr4D 84.337 166 23 3 2281 2445 485558238 485558075 2.650000e-35 159
22 TraesCS5D01G151600 chr2B 87.912 91 6 3 2444 2534 297513775 297513860 4.530000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G151600 chr5D 240840584 240843159 2575 False 4758 4758 100.000 1 2576 1 chr5D.!!$F1 2575
1 TraesCS5D01G151600 chr5B 262839308 262840747 1439 True 1897 1897 90.723 665 2095 1 chr5B.!!$R1 1430
2 TraesCS5D01G151600 chr5A 312924617 312926096 1479 True 1772 1772 88.577 610 2097 1 chr5A.!!$R1 1487
3 TraesCS5D01G151600 chr3D 491627754 491628363 609 True 1094 1094 99.018 1 610 1 chr3D.!!$R5 609
4 TraesCS5D01G151600 chr3D 30055188 30055797 609 True 1088 1088 98.854 1 610 1 chr3D.!!$R1 609
5 TraesCS5D01G151600 chr3D 32733486 32734095 609 True 1088 1088 98.854 1 610 1 chr3D.!!$R2 609
6 TraesCS5D01G151600 chr3D 46546749 46547358 609 True 1088 1088 98.854 1 610 1 chr3D.!!$R3 609
7 TraesCS5D01G151600 chr3D 367314528 367315137 609 True 1088 1088 98.854 1 610 1 chr3D.!!$R4 609
8 TraesCS5D01G151600 chr3D 391606097 391606706 609 False 1083 1083 98.691 1 610 1 chr3D.!!$F1 609
9 TraesCS5D01G151600 chr7D 101141703 101142317 614 True 1090 1090 98.701 1 614 1 chr7D.!!$R1 613
10 TraesCS5D01G151600 chr7D 89273125 89273734 609 False 1088 1088 98.854 1 610 1 chr7D.!!$F1 609
11 TraesCS5D01G151600 chr1D 460320584 460321193 609 False 1088 1088 98.856 1 611 1 chr1D.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 712 0.179215 GCATCAACTCAAGTTCGCCG 60.179 55.0 0.0 0.0 35.83 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2442 0.031585 TTCGGACAGTGACACTTCCG 59.968 55.0 31.76 31.76 43.56 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.962489 CTGACACTCGAAGGTCCACT 59.038 55.000 12.13 0.00 33.09 4.00
145 146 1.517257 GCTGAGTATCGCGCTGTGT 60.517 57.895 5.56 0.00 38.61 3.72
206 207 0.752009 TCCGAGCTACACAGGCCTAG 60.752 60.000 3.98 3.33 0.00 3.02
411 412 1.602237 GGCACTGCCTACTAAGCCA 59.398 57.895 13.28 0.00 46.69 4.75
624 627 5.126869 TCAGCTTTCACCTTGTTCATTTTGA 59.873 36.000 0.00 0.00 0.00 2.69
625 628 5.987347 CAGCTTTCACCTTGTTCATTTTGAT 59.013 36.000 0.00 0.00 0.00 2.57
626 629 7.014134 TCAGCTTTCACCTTGTTCATTTTGATA 59.986 33.333 0.00 0.00 0.00 2.15
627 630 7.816031 CAGCTTTCACCTTGTTCATTTTGATAT 59.184 33.333 0.00 0.00 0.00 1.63
629 632 8.992073 GCTTTCACCTTGTTCATTTTGATATTT 58.008 29.630 0.00 0.00 0.00 1.40
685 689 0.314935 GCTGTTCCCAACACACCATG 59.685 55.000 0.00 0.00 36.25 3.66
708 712 0.179215 GCATCAACTCAAGTTCGCCG 60.179 55.000 0.00 0.00 35.83 6.46
710 714 1.298859 ATCAACTCAAGTTCGCCGCC 61.299 55.000 0.00 0.00 35.83 6.13
714 718 4.612412 TCAAGTTCGCCGCCGGTT 62.612 61.111 4.45 0.00 34.56 4.44
719 731 1.519013 GTTCGCCGCCGGTTACATA 60.519 57.895 4.45 0.00 34.56 2.29
722 734 2.235016 CGCCGCCGGTTACATACTG 61.235 63.158 4.45 0.00 0.00 2.74
735 747 2.473816 ACATACTGATTCGTGCATCGG 58.526 47.619 8.46 1.08 40.32 4.18
738 750 1.878069 CTGATTCGTGCATCGGCGA 60.878 57.895 13.87 13.87 45.35 5.54
748 761 0.510359 GCATCGGCGATCATCTGAAC 59.490 55.000 21.25 0.00 0.00 3.18
761 774 0.482446 TCTGAACAACCCCATGCCTT 59.518 50.000 0.00 0.00 0.00 4.35
771 784 0.332632 CCCATGCCTTCCCTTCTCAA 59.667 55.000 0.00 0.00 0.00 3.02
803 816 1.040646 AGAGACAGAAACCGCAGACA 58.959 50.000 0.00 0.00 0.00 3.41
894 908 2.224159 ACACCCACGCCATCCTTCT 61.224 57.895 0.00 0.00 0.00 2.85
895 909 1.002134 CACCCACGCCATCCTTCTT 60.002 57.895 0.00 0.00 0.00 2.52
901 915 0.827368 ACGCCATCCTTCTTCTCTCC 59.173 55.000 0.00 0.00 0.00 3.71
995 1009 3.004629 CCTAGCTAGCTCTCACATCACAG 59.995 52.174 23.26 8.70 0.00 3.66
1047 1061 3.544167 CTCCTCCGCCTACGCATCG 62.544 68.421 0.00 0.00 38.22 3.84
1051 1065 4.547905 CCGCCTACGCATCGTCGT 62.548 66.667 0.00 5.61 45.49 4.34
1054 1068 2.795973 CCTACGCATCGTCGTCCA 59.204 61.111 0.00 0.00 43.15 4.02
1074 1088 3.364441 GCGTCACCATGGCAGCAA 61.364 61.111 13.04 0.00 0.00 3.91
1077 1091 1.582968 GTCACCATGGCAGCAACTG 59.417 57.895 13.04 0.00 34.12 3.16
1304 1324 2.756283 CGAACTCCTCCTCCCGCT 60.756 66.667 0.00 0.00 0.00 5.52
1613 1648 4.380841 CACATATGCATGGTGCTTCTTT 57.619 40.909 17.00 0.00 45.31 2.52
1621 1656 1.609208 TGGTGCTTCTTTCTTCTGGC 58.391 50.000 0.00 0.00 0.00 4.85
1628 1663 2.550830 TCTTTCTTCTGGCTGTGACC 57.449 50.000 0.00 0.00 0.00 4.02
1629 1664 1.151668 CTTTCTTCTGGCTGTGACCG 58.848 55.000 0.00 0.00 0.00 4.79
1636 1671 2.435059 GGCTGTGACCGGAGCTTC 60.435 66.667 9.46 0.00 35.42 3.86
1647 1682 0.597568 CGGAGCTTCATTGTTGGCAA 59.402 50.000 0.00 0.00 39.16 4.52
1648 1683 1.000385 CGGAGCTTCATTGTTGGCAAA 60.000 47.619 0.00 0.00 38.21 3.68
1649 1684 2.353011 CGGAGCTTCATTGTTGGCAAAT 60.353 45.455 0.00 0.00 38.21 2.32
1650 1685 2.997986 GGAGCTTCATTGTTGGCAAATG 59.002 45.455 0.00 3.24 38.21 2.32
1651 1686 2.997986 GAGCTTCATTGTTGGCAAATGG 59.002 45.455 0.00 0.00 38.21 3.16
1652 1687 1.465777 GCTTCATTGTTGGCAAATGGC 59.534 47.619 0.00 0.00 38.21 4.40
1653 1688 2.872842 GCTTCATTGTTGGCAAATGGCT 60.873 45.455 0.00 0.00 44.01 4.75
1725 1781 6.944557 TTATGTTGTGATTGACTCGTACTG 57.055 37.500 0.00 0.00 0.00 2.74
1755 1811 1.463444 GGACGGGTTTCAGTTTCATCG 59.537 52.381 0.00 0.00 0.00 3.84
1820 1877 8.386264 AGGACATGGATTTTCTTCTCTCTTTTA 58.614 33.333 0.00 0.00 0.00 1.52
1888 1945 2.231478 TCGGGTCAAGATCAACTGTCTC 59.769 50.000 0.00 0.00 0.00 3.36
1965 2022 6.144402 CGCCAAAGCAGCCAATAATTATAAAG 59.856 38.462 0.00 0.00 39.83 1.85
1966 2023 6.073602 GCCAAAGCAGCCAATAATTATAAAGC 60.074 38.462 0.00 2.62 39.53 3.51
1967 2024 6.985645 CCAAAGCAGCCAATAATTATAAAGCA 59.014 34.615 13.62 0.00 0.00 3.91
1968 2025 7.170320 CCAAAGCAGCCAATAATTATAAAGCAG 59.830 37.037 13.62 8.69 0.00 4.24
2036 2093 1.350193 CCAAATCCGACTGAGACGTG 58.650 55.000 0.00 0.00 0.00 4.49
2051 2116 1.878522 CGTGCGTACATCAGCCCTC 60.879 63.158 4.09 0.00 0.00 4.30
2069 2134 3.557264 CCCTCGGCTTCAATAATCTACCC 60.557 52.174 0.00 0.00 0.00 3.69
2077 2142 5.470437 GCTTCAATAATCTACCCTAACCTGC 59.530 44.000 0.00 0.00 0.00 4.85
2097 2163 2.743938 CGAATCGGCTAGCACTTATGT 58.256 47.619 18.24 0.00 0.00 2.29
2098 2164 3.123804 CGAATCGGCTAGCACTTATGTT 58.876 45.455 18.24 0.88 0.00 2.71
2099 2165 3.060272 CGAATCGGCTAGCACTTATGTTG 60.060 47.826 18.24 0.00 0.00 3.33
2100 2166 2.309528 TCGGCTAGCACTTATGTTGG 57.690 50.000 18.24 0.00 0.00 3.77
2101 2167 1.828595 TCGGCTAGCACTTATGTTGGA 59.171 47.619 18.24 0.00 0.00 3.53
2102 2168 2.434336 TCGGCTAGCACTTATGTTGGAT 59.566 45.455 18.24 0.00 0.00 3.41
2103 2169 3.118408 TCGGCTAGCACTTATGTTGGATT 60.118 43.478 18.24 0.00 0.00 3.01
2104 2170 4.100344 TCGGCTAGCACTTATGTTGGATTA 59.900 41.667 18.24 0.00 0.00 1.75
2105 2171 4.997395 CGGCTAGCACTTATGTTGGATTAT 59.003 41.667 18.24 0.00 0.00 1.28
2106 2172 6.014925 TCGGCTAGCACTTATGTTGGATTATA 60.015 38.462 18.24 0.00 0.00 0.98
2107 2173 6.311445 CGGCTAGCACTTATGTTGGATTATAG 59.689 42.308 18.24 0.00 0.00 1.31
2108 2174 7.386851 GGCTAGCACTTATGTTGGATTATAGA 58.613 38.462 18.24 0.00 0.00 1.98
2109 2175 8.043710 GGCTAGCACTTATGTTGGATTATAGAT 58.956 37.037 18.24 0.00 0.00 1.98
2110 2176 8.877779 GCTAGCACTTATGTTGGATTATAGATG 58.122 37.037 10.63 0.00 0.00 2.90
2113 2179 7.605691 AGCACTTATGTTGGATTATAGATGAGC 59.394 37.037 0.00 0.00 0.00 4.26
2114 2180 7.605691 GCACTTATGTTGGATTATAGATGAGCT 59.394 37.037 0.00 0.00 0.00 4.09
2115 2181 9.499479 CACTTATGTTGGATTATAGATGAGCTT 57.501 33.333 0.00 0.00 0.00 3.74
2119 2185 6.467677 TGTTGGATTATAGATGAGCTTAGGC 58.532 40.000 0.00 0.00 39.06 3.93
2120 2186 5.683876 TGGATTATAGATGAGCTTAGGCC 57.316 43.478 0.00 0.00 39.73 5.19
2121 2187 4.160439 TGGATTATAGATGAGCTTAGGCCG 59.840 45.833 0.00 0.00 39.73 6.13
2122 2188 4.442192 GGATTATAGATGAGCTTAGGCCGG 60.442 50.000 0.00 0.00 39.73 6.13
2123 2189 2.016905 ATAGATGAGCTTAGGCCGGT 57.983 50.000 1.90 0.00 39.73 5.28
2124 2190 2.670019 TAGATGAGCTTAGGCCGGTA 57.330 50.000 1.90 0.00 39.73 4.02
2125 2191 2.016905 AGATGAGCTTAGGCCGGTAT 57.983 50.000 1.90 0.00 39.73 2.73
2126 2192 3.170991 AGATGAGCTTAGGCCGGTATA 57.829 47.619 1.90 0.00 39.73 1.47
2127 2193 3.507411 AGATGAGCTTAGGCCGGTATAA 58.493 45.455 1.90 1.55 39.73 0.98
2128 2194 3.511934 AGATGAGCTTAGGCCGGTATAAG 59.488 47.826 18.29 18.29 39.73 1.73
2129 2195 2.953453 TGAGCTTAGGCCGGTATAAGA 58.047 47.619 23.82 7.46 39.73 2.10
2130 2196 2.626743 TGAGCTTAGGCCGGTATAAGAC 59.373 50.000 23.82 17.90 39.73 3.01
2131 2197 2.626743 GAGCTTAGGCCGGTATAAGACA 59.373 50.000 23.82 0.00 39.73 3.41
2132 2198 3.036091 AGCTTAGGCCGGTATAAGACAA 58.964 45.455 23.82 1.13 39.73 3.18
2133 2199 3.646637 AGCTTAGGCCGGTATAAGACAAT 59.353 43.478 23.82 9.33 39.73 2.71
2134 2200 4.836736 AGCTTAGGCCGGTATAAGACAATA 59.163 41.667 23.82 0.00 39.73 1.90
2135 2201 5.306160 AGCTTAGGCCGGTATAAGACAATAA 59.694 40.000 23.82 2.37 39.73 1.40
2136 2202 6.013639 AGCTTAGGCCGGTATAAGACAATAAT 60.014 38.462 23.82 5.05 39.73 1.28
2137 2203 6.313164 GCTTAGGCCGGTATAAGACAATAATC 59.687 42.308 23.82 6.89 31.87 1.75
2138 2204 5.818678 AGGCCGGTATAAGACAATAATCA 57.181 39.130 1.90 0.00 0.00 2.57
2139 2205 6.374417 AGGCCGGTATAAGACAATAATCAT 57.626 37.500 1.90 0.00 0.00 2.45
2140 2206 6.779860 AGGCCGGTATAAGACAATAATCATT 58.220 36.000 1.90 0.00 0.00 2.57
2141 2207 6.655003 AGGCCGGTATAAGACAATAATCATTG 59.345 38.462 1.90 0.00 45.94 2.82
2142 2208 6.653320 GGCCGGTATAAGACAATAATCATTGA 59.347 38.462 1.90 0.00 43.67 2.57
2143 2209 7.336931 GGCCGGTATAAGACAATAATCATTGAT 59.663 37.037 1.90 0.00 43.67 2.57
2144 2210 8.730680 GCCGGTATAAGACAATAATCATTGATT 58.269 33.333 15.78 15.78 43.67 2.57
2162 2228 9.784531 TCATTGATTAATCTCTAAAGCCTAAGG 57.215 33.333 16.24 0.96 0.00 2.69
2163 2229 9.566432 CATTGATTAATCTCTAAAGCCTAAGGT 57.434 33.333 16.24 0.00 0.00 3.50
2164 2230 8.964476 TTGATTAATCTCTAAAGCCTAAGGTG 57.036 34.615 16.24 0.00 0.00 4.00
2165 2231 6.992715 TGATTAATCTCTAAAGCCTAAGGTGC 59.007 38.462 16.24 0.00 0.00 5.01
2166 2232 4.844349 AATCTCTAAAGCCTAAGGTGCA 57.156 40.909 0.00 0.00 0.00 4.57
2167 2233 3.611766 TCTCTAAAGCCTAAGGTGCAC 57.388 47.619 8.80 8.80 0.00 4.57
2168 2234 2.094182 TCTCTAAAGCCTAAGGTGCACG 60.094 50.000 11.45 0.00 0.00 5.34
2169 2235 1.066430 TCTAAAGCCTAAGGTGCACGG 60.066 52.381 11.45 7.48 0.00 4.94
2170 2236 0.675522 TAAAGCCTAAGGTGCACGGC 60.676 55.000 21.73 21.73 42.79 5.68
2171 2237 2.690653 AAAGCCTAAGGTGCACGGCA 62.691 55.000 28.07 9.04 44.85 5.69
2172 2238 2.671619 GCCTAAGGTGCACGGCAA 60.672 61.111 23.58 4.44 41.47 4.52
2178 2244 2.562912 GGTGCACGGCAACTGATG 59.437 61.111 11.45 0.00 43.73 3.07
2179 2245 2.260869 GGTGCACGGCAACTGATGT 61.261 57.895 11.45 0.00 43.73 3.06
2180 2246 1.081906 GTGCACGGCAACTGATGTG 60.082 57.895 0.00 0.00 41.47 3.21
2181 2247 1.227793 TGCACGGCAACTGATGTGA 60.228 52.632 6.09 0.00 34.76 3.58
2182 2248 0.817229 TGCACGGCAACTGATGTGAA 60.817 50.000 6.09 0.00 34.76 3.18
2183 2249 0.110056 GCACGGCAACTGATGTGAAG 60.110 55.000 6.09 0.00 34.29 3.02
2184 2250 1.229428 CACGGCAACTGATGTGAAGT 58.771 50.000 0.00 0.00 34.29 3.01
2185 2251 1.603802 CACGGCAACTGATGTGAAGTT 59.396 47.619 0.00 0.00 38.40 2.66
2186 2252 2.033299 CACGGCAACTGATGTGAAGTTT 59.967 45.455 0.00 0.00 35.70 2.66
2187 2253 3.249799 CACGGCAACTGATGTGAAGTTTA 59.750 43.478 0.00 0.00 35.70 2.01
2188 2254 3.498397 ACGGCAACTGATGTGAAGTTTAG 59.502 43.478 0.00 0.00 35.70 1.85
2189 2255 3.498397 CGGCAACTGATGTGAAGTTTAGT 59.502 43.478 0.00 0.00 35.70 2.24
2190 2256 4.688879 CGGCAACTGATGTGAAGTTTAGTA 59.311 41.667 0.00 0.00 35.70 1.82
2191 2257 5.351465 CGGCAACTGATGTGAAGTTTAGTAT 59.649 40.000 0.00 0.00 35.70 2.12
2192 2258 6.533723 CGGCAACTGATGTGAAGTTTAGTATA 59.466 38.462 0.00 0.00 35.70 1.47
2193 2259 7.064134 CGGCAACTGATGTGAAGTTTAGTATAA 59.936 37.037 0.00 0.00 35.70 0.98
2194 2260 8.893727 GGCAACTGATGTGAAGTTTAGTATAAT 58.106 33.333 0.00 0.00 35.70 1.28
2246 2312 9.657419 CCTTTCATAAGGTTTGCTCAATAATTT 57.343 29.630 0.00 0.00 45.01 1.82
2248 2314 8.477984 TTCATAAGGTTTGCTCAATAATTTGC 57.522 30.769 0.00 0.00 32.61 3.68
2249 2315 7.839907 TCATAAGGTTTGCTCAATAATTTGCT 58.160 30.769 0.00 0.00 32.61 3.91
2250 2316 7.760794 TCATAAGGTTTGCTCAATAATTTGCTG 59.239 33.333 0.00 0.00 32.61 4.41
2251 2317 5.473066 AGGTTTGCTCAATAATTTGCTGT 57.527 34.783 0.00 0.00 32.61 4.40
2252 2318 5.857268 AGGTTTGCTCAATAATTTGCTGTT 58.143 33.333 0.00 0.00 32.61 3.16
2253 2319 6.991938 AGGTTTGCTCAATAATTTGCTGTTA 58.008 32.000 0.00 0.00 32.61 2.41
2254 2320 7.092716 AGGTTTGCTCAATAATTTGCTGTTAG 58.907 34.615 0.00 0.00 32.61 2.34
2255 2321 6.311200 GGTTTGCTCAATAATTTGCTGTTAGG 59.689 38.462 0.00 0.00 32.61 2.69
2256 2322 6.588719 TTGCTCAATAATTTGCTGTTAGGT 57.411 33.333 0.00 0.00 32.61 3.08
2257 2323 5.953183 TGCTCAATAATTTGCTGTTAGGTG 58.047 37.500 0.00 0.00 32.61 4.00
2258 2324 4.800471 GCTCAATAATTTGCTGTTAGGTGC 59.200 41.667 0.00 0.00 32.61 5.01
2259 2325 5.393461 GCTCAATAATTTGCTGTTAGGTGCT 60.393 40.000 0.00 0.00 32.61 4.40
2260 2326 6.588719 TCAATAATTTGCTGTTAGGTGCTT 57.411 33.333 0.00 0.00 32.61 3.91
2261 2327 6.389091 TCAATAATTTGCTGTTAGGTGCTTG 58.611 36.000 0.00 0.00 32.61 4.01
2262 2328 3.665745 AATTTGCTGTTAGGTGCTTGG 57.334 42.857 0.00 0.00 0.00 3.61
2263 2329 1.327303 TTTGCTGTTAGGTGCTTGGG 58.673 50.000 0.00 0.00 0.00 4.12
2264 2330 0.476338 TTGCTGTTAGGTGCTTGGGA 59.524 50.000 0.00 0.00 0.00 4.37
2265 2331 0.476338 TGCTGTTAGGTGCTTGGGAA 59.524 50.000 0.00 0.00 0.00 3.97
2266 2332 1.075374 TGCTGTTAGGTGCTTGGGAAT 59.925 47.619 0.00 0.00 0.00 3.01
2267 2333 2.307392 TGCTGTTAGGTGCTTGGGAATA 59.693 45.455 0.00 0.00 0.00 1.75
2268 2334 3.245087 TGCTGTTAGGTGCTTGGGAATAA 60.245 43.478 0.00 0.00 0.00 1.40
2269 2335 3.378427 GCTGTTAGGTGCTTGGGAATAAG 59.622 47.826 0.00 0.00 0.00 1.73
2270 2336 4.843728 CTGTTAGGTGCTTGGGAATAAGA 58.156 43.478 0.00 0.00 0.00 2.10
2271 2337 5.249780 TGTTAGGTGCTTGGGAATAAGAA 57.750 39.130 0.00 0.00 0.00 2.52
2272 2338 5.007682 TGTTAGGTGCTTGGGAATAAGAAC 58.992 41.667 0.00 0.00 35.79 3.01
2273 2339 5.222048 TGTTAGGTGCTTGGGAATAAGAACT 60.222 40.000 0.00 0.00 36.61 3.01
2274 2340 3.690460 AGGTGCTTGGGAATAAGAACTG 58.310 45.455 0.00 0.00 36.61 3.16
2275 2341 3.074538 AGGTGCTTGGGAATAAGAACTGT 59.925 43.478 0.00 0.00 36.61 3.55
2276 2342 4.288626 AGGTGCTTGGGAATAAGAACTGTA 59.711 41.667 0.00 0.00 36.61 2.74
2277 2343 4.395231 GGTGCTTGGGAATAAGAACTGTAC 59.605 45.833 0.00 0.00 36.61 2.90
2278 2344 4.092968 GTGCTTGGGAATAAGAACTGTACG 59.907 45.833 0.00 0.00 34.07 3.67
2279 2345 4.020928 TGCTTGGGAATAAGAACTGTACGA 60.021 41.667 0.00 0.00 0.00 3.43
2280 2346 4.329256 GCTTGGGAATAAGAACTGTACGAC 59.671 45.833 0.00 0.00 0.00 4.34
2281 2347 4.100707 TGGGAATAAGAACTGTACGACG 57.899 45.455 0.00 0.00 0.00 5.12
2282 2348 2.856557 GGGAATAAGAACTGTACGACGC 59.143 50.000 0.00 0.00 0.00 5.19
2283 2349 2.529090 GGAATAAGAACTGTACGACGCG 59.471 50.000 3.53 3.53 0.00 6.01
2284 2350 1.542544 ATAAGAACTGTACGACGCGC 58.457 50.000 5.73 0.00 0.00 6.86
2286 2352 4.174320 GAACTGTACGACGCGCGC 62.174 66.667 32.58 23.91 46.04 6.86
2305 2371 3.508840 GCGGGTTGCGGGAATGAG 61.509 66.667 0.00 0.00 0.00 2.90
2306 2372 3.508840 CGGGTTGCGGGAATGAGC 61.509 66.667 0.00 0.00 0.00 4.26
2307 2373 3.140814 GGGTTGCGGGAATGAGCC 61.141 66.667 0.00 0.00 0.00 4.70
2308 2374 3.508840 GGTTGCGGGAATGAGCCG 61.509 66.667 0.00 0.00 0.00 5.52
2309 2375 2.435938 GTTGCGGGAATGAGCCGA 60.436 61.111 0.00 0.00 0.00 5.54
2310 2376 2.125147 TTGCGGGAATGAGCCGAG 60.125 61.111 0.00 0.00 0.00 4.63
2311 2377 4.838152 TGCGGGAATGAGCCGAGC 62.838 66.667 0.00 0.00 34.29 5.03
2312 2378 4.537433 GCGGGAATGAGCCGAGCT 62.537 66.667 0.00 0.00 43.88 4.09
2313 2379 2.587194 CGGGAATGAGCCGAGCTG 60.587 66.667 2.98 0.00 39.88 4.24
2314 2380 2.903357 GGGAATGAGCCGAGCTGA 59.097 61.111 2.98 0.00 39.88 4.26
2315 2381 1.227497 GGGAATGAGCCGAGCTGAG 60.227 63.158 2.98 0.00 39.88 3.35
2316 2382 1.886777 GGAATGAGCCGAGCTGAGC 60.887 63.158 0.00 0.00 39.88 4.26
2317 2383 1.886777 GAATGAGCCGAGCTGAGCC 60.887 63.158 0.00 0.00 39.88 4.70
2318 2384 2.308968 GAATGAGCCGAGCTGAGCCT 62.309 60.000 0.00 0.00 39.88 4.58
2319 2385 1.908340 AATGAGCCGAGCTGAGCCTT 61.908 55.000 0.00 0.00 39.88 4.35
2320 2386 1.045350 ATGAGCCGAGCTGAGCCTTA 61.045 55.000 0.00 0.00 39.88 2.69
2321 2387 1.045350 TGAGCCGAGCTGAGCCTTAT 61.045 55.000 0.00 0.00 39.88 1.73
2322 2388 0.105778 GAGCCGAGCTGAGCCTTATT 59.894 55.000 0.00 0.00 39.88 1.40
2323 2389 0.543749 AGCCGAGCTGAGCCTTATTT 59.456 50.000 0.00 0.00 37.57 1.40
2324 2390 1.065126 AGCCGAGCTGAGCCTTATTTT 60.065 47.619 0.00 0.00 37.57 1.82
2325 2391 1.745653 GCCGAGCTGAGCCTTATTTTT 59.254 47.619 0.00 0.00 0.00 1.94
2326 2392 2.943033 GCCGAGCTGAGCCTTATTTTTA 59.057 45.455 0.00 0.00 0.00 1.52
2327 2393 3.242772 GCCGAGCTGAGCCTTATTTTTAC 60.243 47.826 0.00 0.00 0.00 2.01
2328 2394 3.312697 CCGAGCTGAGCCTTATTTTTACC 59.687 47.826 0.00 0.00 0.00 2.85
2329 2395 3.001330 CGAGCTGAGCCTTATTTTTACCG 59.999 47.826 0.00 0.00 0.00 4.02
2330 2396 3.279434 AGCTGAGCCTTATTTTTACCGG 58.721 45.455 0.00 0.00 0.00 5.28
2331 2397 3.014623 GCTGAGCCTTATTTTTACCGGT 58.985 45.455 13.98 13.98 0.00 5.28
2332 2398 3.181500 GCTGAGCCTTATTTTTACCGGTG 60.181 47.826 19.93 0.00 0.00 4.94
2333 2399 4.007659 CTGAGCCTTATTTTTACCGGTGT 58.992 43.478 19.93 0.14 0.00 4.16
2334 2400 5.163281 TGAGCCTTATTTTTACCGGTGTA 57.837 39.130 19.93 1.41 0.00 2.90
2335 2401 5.558818 TGAGCCTTATTTTTACCGGTGTAA 58.441 37.500 19.93 8.75 35.17 2.41
2336 2402 6.002704 TGAGCCTTATTTTTACCGGTGTAAA 58.997 36.000 19.93 17.17 43.43 2.01
2373 2439 8.897872 AATTATGGATTAATTAACGAGTCGGT 57.102 30.769 18.30 13.89 38.47 4.69
2374 2440 8.897872 ATTATGGATTAATTAACGAGTCGGTT 57.102 30.769 18.30 11.03 0.00 4.44
2375 2441 9.985730 ATTATGGATTAATTAACGAGTCGGTTA 57.014 29.630 18.30 4.20 0.00 2.85
2376 2442 7.704789 ATGGATTAATTAACGAGTCGGTTAC 57.295 36.000 18.30 0.00 32.42 2.50
2377 2443 5.743398 TGGATTAATTAACGAGTCGGTTACG 59.257 40.000 18.30 0.00 42.74 3.18
2378 2444 5.173854 GGATTAATTAACGAGTCGGTTACGG 59.826 44.000 18.30 0.00 41.39 4.02
2379 2445 3.848272 AATTAACGAGTCGGTTACGGA 57.152 42.857 18.30 0.00 41.39 4.69
2380 2446 3.848272 ATTAACGAGTCGGTTACGGAA 57.152 42.857 18.30 0.74 41.39 4.30
2381 2447 2.900122 TAACGAGTCGGTTACGGAAG 57.100 50.000 18.30 0.00 41.39 3.46
2393 2459 1.362717 ACGGAAGTGTCACTGTCCG 59.637 57.895 32.37 32.37 45.51 4.79
2394 2460 1.105167 ACGGAAGTGTCACTGTCCGA 61.105 55.000 36.40 0.00 44.22 4.55
2395 2461 0.031585 CGGAAGTGTCACTGTCCGAA 59.968 55.000 31.57 0.00 44.22 4.30
2396 2462 1.537348 CGGAAGTGTCACTGTCCGAAA 60.537 52.381 31.57 0.00 44.22 3.46
2397 2463 1.865340 GGAAGTGTCACTGTCCGAAAC 59.135 52.381 6.18 0.00 0.00 2.78
2398 2464 2.546778 GAAGTGTCACTGTCCGAAACA 58.453 47.619 6.18 0.00 36.18 2.83
2399 2465 2.910688 AGTGTCACTGTCCGAAACAT 57.089 45.000 4.21 0.00 37.23 2.71
2400 2466 3.194005 AGTGTCACTGTCCGAAACATT 57.806 42.857 4.21 0.00 37.23 2.71
2401 2467 2.872245 AGTGTCACTGTCCGAAACATTG 59.128 45.455 4.21 0.00 39.30 2.82
2402 2468 2.032030 GTGTCACTGTCCGAAACATTGG 60.032 50.000 0.00 0.00 38.66 3.16
2403 2469 2.158885 TGTCACTGTCCGAAACATTGGA 60.159 45.455 7.89 0.00 38.66 3.53
2404 2470 3.074412 GTCACTGTCCGAAACATTGGAT 58.926 45.455 7.89 0.00 38.66 3.41
2405 2471 3.502211 GTCACTGTCCGAAACATTGGATT 59.498 43.478 7.89 0.00 38.66 3.01
2406 2472 3.501828 TCACTGTCCGAAACATTGGATTG 59.498 43.478 7.89 0.00 38.66 2.67
2407 2473 3.253188 CACTGTCCGAAACATTGGATTGT 59.747 43.478 0.00 0.00 37.23 2.71
2408 2474 3.253188 ACTGTCCGAAACATTGGATTGTG 59.747 43.478 0.00 0.00 37.23 3.33
2409 2475 2.556189 TGTCCGAAACATTGGATTGTGG 59.444 45.455 0.00 0.00 36.48 4.17
2410 2476 2.094752 GTCCGAAACATTGGATTGTGGG 60.095 50.000 0.00 0.00 36.48 4.61
2411 2477 1.404047 CCGAAACATTGGATTGTGGGC 60.404 52.381 0.00 0.00 0.00 5.36
2412 2478 1.545582 CGAAACATTGGATTGTGGGCT 59.454 47.619 0.00 0.00 0.00 5.19
2413 2479 2.671914 CGAAACATTGGATTGTGGGCTG 60.672 50.000 0.00 0.00 0.00 4.85
2414 2480 2.014010 AACATTGGATTGTGGGCTGT 57.986 45.000 0.00 0.00 0.00 4.40
2415 2481 2.014010 ACATTGGATTGTGGGCTGTT 57.986 45.000 0.00 0.00 0.00 3.16
2416 2482 1.895131 ACATTGGATTGTGGGCTGTTC 59.105 47.619 0.00 0.00 0.00 3.18
2417 2483 1.135315 CATTGGATTGTGGGCTGTTCG 60.135 52.381 0.00 0.00 0.00 3.95
2418 2484 1.523154 TTGGATTGTGGGCTGTTCGC 61.523 55.000 0.00 0.00 38.13 4.70
2419 2485 2.480555 GATTGTGGGCTGTTCGCG 59.519 61.111 0.00 0.00 40.44 5.87
2420 2486 3.039202 GATTGTGGGCTGTTCGCGG 62.039 63.158 6.13 0.00 40.44 6.46
2421 2487 3.545124 ATTGTGGGCTGTTCGCGGA 62.545 57.895 6.13 0.00 40.44 5.54
2422 2488 4.980805 TGTGGGCTGTTCGCGGAC 62.981 66.667 11.62 11.62 40.44 4.79
2423 2489 4.681978 GTGGGCTGTTCGCGGACT 62.682 66.667 20.15 0.00 40.44 3.85
2424 2490 4.373116 TGGGCTGTTCGCGGACTC 62.373 66.667 20.15 10.36 40.44 3.36
2437 2503 4.803426 GACTCGCTCGTGGGCCTG 62.803 72.222 4.53 0.00 0.00 4.85
2439 2505 4.504916 CTCGCTCGTGGGCCTGAG 62.505 72.222 18.40 18.40 35.30 3.35
2451 2517 4.463879 CCTGAGCCGAGCCAGTGG 62.464 72.222 4.20 4.20 0.00 4.00
2452 2518 3.385384 CTGAGCCGAGCCAGTGGA 61.385 66.667 15.20 0.00 0.00 4.02
2453 2519 3.368190 CTGAGCCGAGCCAGTGGAG 62.368 68.421 15.20 2.80 0.00 3.86
2454 2520 3.386237 GAGCCGAGCCAGTGGAGT 61.386 66.667 15.20 0.00 0.00 3.85
2455 2521 3.655810 GAGCCGAGCCAGTGGAGTG 62.656 68.421 15.20 0.08 0.00 3.51
2456 2522 3.695606 GCCGAGCCAGTGGAGTGA 61.696 66.667 15.20 0.00 0.00 3.41
2457 2523 3.059982 CCGAGCCAGTGGAGTGAA 58.940 61.111 15.20 0.00 0.00 3.18
2458 2524 1.374758 CCGAGCCAGTGGAGTGAAC 60.375 63.158 15.20 0.00 0.00 3.18
2459 2525 1.374758 CGAGCCAGTGGAGTGAACC 60.375 63.158 15.20 0.00 0.00 3.62
2460 2526 1.003233 GAGCCAGTGGAGTGAACCC 60.003 63.158 15.20 0.00 0.00 4.11
2461 2527 1.462238 AGCCAGTGGAGTGAACCCT 60.462 57.895 15.20 0.00 0.00 4.34
2462 2528 0.178903 AGCCAGTGGAGTGAACCCTA 60.179 55.000 15.20 0.00 0.00 3.53
2463 2529 0.250513 GCCAGTGGAGTGAACCCTAG 59.749 60.000 15.20 0.00 0.00 3.02
2464 2530 0.250513 CCAGTGGAGTGAACCCTAGC 59.749 60.000 1.68 0.00 0.00 3.42
2465 2531 1.270907 CAGTGGAGTGAACCCTAGCT 58.729 55.000 0.00 0.00 0.00 3.32
2466 2532 1.625818 CAGTGGAGTGAACCCTAGCTT 59.374 52.381 0.00 0.00 0.00 3.74
2467 2533 2.832129 CAGTGGAGTGAACCCTAGCTTA 59.168 50.000 0.00 0.00 0.00 3.09
2468 2534 3.100671 AGTGGAGTGAACCCTAGCTTAG 58.899 50.000 0.00 0.00 0.00 2.18
2469 2535 2.832733 GTGGAGTGAACCCTAGCTTAGT 59.167 50.000 0.00 0.00 0.00 2.24
2470 2536 3.261137 GTGGAGTGAACCCTAGCTTAGTT 59.739 47.826 0.00 0.00 0.00 2.24
2471 2537 3.514309 TGGAGTGAACCCTAGCTTAGTTC 59.486 47.826 13.42 13.42 40.23 3.01
2472 2538 3.514309 GGAGTGAACCCTAGCTTAGTTCA 59.486 47.826 17.17 17.17 45.60 3.18
2475 2541 4.803098 TGAACCCTAGCTTAGTTCACTC 57.197 45.455 17.17 0.00 43.60 3.51
2476 2542 3.514309 TGAACCCTAGCTTAGTTCACTCC 59.486 47.826 17.17 0.00 43.60 3.85
2477 2543 2.468915 ACCCTAGCTTAGTTCACTCCC 58.531 52.381 0.00 0.00 0.00 4.30
2478 2544 2.044630 ACCCTAGCTTAGTTCACTCCCT 59.955 50.000 0.00 0.00 0.00 4.20
2479 2545 2.696187 CCCTAGCTTAGTTCACTCCCTC 59.304 54.545 0.00 0.00 0.00 4.30
2480 2546 2.696187 CCTAGCTTAGTTCACTCCCTCC 59.304 54.545 0.00 0.00 0.00 4.30
2481 2547 1.574263 AGCTTAGTTCACTCCCTCCC 58.426 55.000 0.00 0.00 0.00 4.30
2482 2548 1.079658 AGCTTAGTTCACTCCCTCCCT 59.920 52.381 0.00 0.00 0.00 4.20
2483 2549 1.483004 GCTTAGTTCACTCCCTCCCTC 59.517 57.143 0.00 0.00 0.00 4.30
2484 2550 2.890602 GCTTAGTTCACTCCCTCCCTCT 60.891 54.545 0.00 0.00 0.00 3.69
2485 2551 2.830651 TAGTTCACTCCCTCCCTCTC 57.169 55.000 0.00 0.00 0.00 3.20
2486 2552 0.323908 AGTTCACTCCCTCCCTCTCG 60.324 60.000 0.00 0.00 0.00 4.04
2487 2553 1.682684 TTCACTCCCTCCCTCTCGC 60.683 63.158 0.00 0.00 0.00 5.03
2488 2554 3.522731 CACTCCCTCCCTCTCGCG 61.523 72.222 0.00 0.00 0.00 5.87
2492 2558 4.821589 CCCTCCCTCTCGCGCAAC 62.822 72.222 8.75 0.00 0.00 4.17
2493 2559 4.821589 CCTCCCTCTCGCGCAACC 62.822 72.222 8.75 0.00 0.00 3.77
2494 2560 4.821589 CTCCCTCTCGCGCAACCC 62.822 72.222 8.75 0.00 0.00 4.11
2496 2562 3.458163 CCCTCTCGCGCAACCCTA 61.458 66.667 8.75 0.00 0.00 3.53
2497 2563 2.105128 CCTCTCGCGCAACCCTAG 59.895 66.667 8.75 0.00 0.00 3.02
2498 2564 2.583593 CTCTCGCGCAACCCTAGC 60.584 66.667 8.75 0.00 0.00 3.42
2499 2565 4.143333 TCTCGCGCAACCCTAGCC 62.143 66.667 8.75 0.00 0.00 3.93
2503 2569 4.752879 GCGCAACCCTAGCCGTCA 62.753 66.667 0.30 0.00 0.00 4.35
2504 2570 2.186903 CGCAACCCTAGCCGTCAT 59.813 61.111 0.00 0.00 0.00 3.06
2505 2571 1.440060 CGCAACCCTAGCCGTCATA 59.560 57.895 0.00 0.00 0.00 2.15
2506 2572 0.033504 CGCAACCCTAGCCGTCATAT 59.966 55.000 0.00 0.00 0.00 1.78
2507 2573 1.271379 CGCAACCCTAGCCGTCATATA 59.729 52.381 0.00 0.00 0.00 0.86
2508 2574 2.685100 GCAACCCTAGCCGTCATATAC 58.315 52.381 0.00 0.00 0.00 1.47
2509 2575 2.299297 GCAACCCTAGCCGTCATATACT 59.701 50.000 0.00 0.00 0.00 2.12
2510 2576 3.861131 GCAACCCTAGCCGTCATATACTG 60.861 52.174 0.00 0.00 0.00 2.74
2511 2577 3.240310 ACCCTAGCCGTCATATACTGT 57.760 47.619 0.00 0.00 0.00 3.55
2512 2578 2.891580 ACCCTAGCCGTCATATACTGTG 59.108 50.000 0.00 0.00 0.00 3.66
2513 2579 2.891580 CCCTAGCCGTCATATACTGTGT 59.108 50.000 0.00 0.00 0.00 3.72
2514 2580 3.321111 CCCTAGCCGTCATATACTGTGTT 59.679 47.826 0.00 0.00 0.00 3.32
2515 2581 4.202223 CCCTAGCCGTCATATACTGTGTTT 60.202 45.833 0.00 0.00 0.00 2.83
2516 2582 5.357257 CCTAGCCGTCATATACTGTGTTTT 58.643 41.667 0.00 0.00 0.00 2.43
2517 2583 5.815740 CCTAGCCGTCATATACTGTGTTTTT 59.184 40.000 0.00 0.00 0.00 1.94
2518 2584 5.796350 AGCCGTCATATACTGTGTTTTTC 57.204 39.130 0.00 0.00 0.00 2.29
2519 2585 5.488341 AGCCGTCATATACTGTGTTTTTCT 58.512 37.500 0.00 0.00 0.00 2.52
2520 2586 5.581085 AGCCGTCATATACTGTGTTTTTCTC 59.419 40.000 0.00 0.00 0.00 2.87
2521 2587 5.581085 GCCGTCATATACTGTGTTTTTCTCT 59.419 40.000 0.00 0.00 0.00 3.10
2522 2588 6.092259 GCCGTCATATACTGTGTTTTTCTCTT 59.908 38.462 0.00 0.00 0.00 2.85
2523 2589 7.360946 GCCGTCATATACTGTGTTTTTCTCTTT 60.361 37.037 0.00 0.00 0.00 2.52
2524 2590 7.957484 CCGTCATATACTGTGTTTTTCTCTTTG 59.043 37.037 0.00 0.00 0.00 2.77
2525 2591 8.495949 CGTCATATACTGTGTTTTTCTCTTTGT 58.504 33.333 0.00 0.00 0.00 2.83
2526 2592 9.599322 GTCATATACTGTGTTTTTCTCTTTGTG 57.401 33.333 0.00 0.00 0.00 3.33
2527 2593 8.289618 TCATATACTGTGTTTTTCTCTTTGTGC 58.710 33.333 0.00 0.00 0.00 4.57
2528 2594 6.699575 ATACTGTGTTTTTCTCTTTGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
2529 2595 4.737054 ACTGTGTTTTTCTCTTTGTGCTG 58.263 39.130 0.00 0.00 0.00 4.41
2530 2596 3.510719 TGTGTTTTTCTCTTTGTGCTGC 58.489 40.909 0.00 0.00 0.00 5.25
2531 2597 3.193267 TGTGTTTTTCTCTTTGTGCTGCT 59.807 39.130 0.00 0.00 0.00 4.24
2532 2598 4.176271 GTGTTTTTCTCTTTGTGCTGCTT 58.824 39.130 0.00 0.00 0.00 3.91
2533 2599 4.266265 GTGTTTTTCTCTTTGTGCTGCTTC 59.734 41.667 0.00 0.00 0.00 3.86
2534 2600 3.715628 TTTTCTCTTTGTGCTGCTTCC 57.284 42.857 0.00 0.00 0.00 3.46
2535 2601 1.229428 TTCTCTTTGTGCTGCTTCCG 58.771 50.000 0.00 0.00 0.00 4.30
2536 2602 0.603707 TCTCTTTGTGCTGCTTCCGG 60.604 55.000 0.00 0.00 0.00 5.14
2537 2603 2.192608 CTCTTTGTGCTGCTTCCGGC 62.193 60.000 0.00 0.00 43.83 6.13
2538 2604 3.273080 CTTTGTGCTGCTTCCGGCC 62.273 63.158 0.00 0.00 42.87 6.13
2539 2605 4.577677 TTGTGCTGCTTCCGGCCA 62.578 61.111 2.24 0.00 42.87 5.36
2553 2619 4.388499 GCCAGGGCCGTCTTCGAA 62.388 66.667 0.00 0.00 39.71 3.71
2554 2620 2.345991 CCAGGGCCGTCTTCGAAA 59.654 61.111 0.00 0.00 39.71 3.46
2555 2621 1.302192 CCAGGGCCGTCTTCGAAAA 60.302 57.895 0.00 0.00 39.71 2.29
2556 2622 0.676782 CCAGGGCCGTCTTCGAAAAT 60.677 55.000 0.00 0.00 39.71 1.82
2557 2623 1.165270 CAGGGCCGTCTTCGAAAATT 58.835 50.000 0.00 0.00 39.71 1.82
2558 2624 1.539827 CAGGGCCGTCTTCGAAAATTT 59.460 47.619 0.00 0.00 39.71 1.82
2559 2625 1.539827 AGGGCCGTCTTCGAAAATTTG 59.460 47.619 0.00 0.00 39.71 2.32
2560 2626 1.538075 GGGCCGTCTTCGAAAATTTGA 59.462 47.619 0.00 0.00 39.71 2.69
2561 2627 2.414161 GGGCCGTCTTCGAAAATTTGAG 60.414 50.000 0.00 0.00 39.71 3.02
2562 2628 2.414161 GGCCGTCTTCGAAAATTTGAGG 60.414 50.000 0.00 0.00 39.71 3.86
2563 2629 2.851534 CCGTCTTCGAAAATTTGAGGC 58.148 47.619 0.00 0.00 39.71 4.70
2564 2630 2.414161 CCGTCTTCGAAAATTTGAGGCC 60.414 50.000 0.00 0.00 39.71 5.19
2565 2631 2.414161 CGTCTTCGAAAATTTGAGGCCC 60.414 50.000 0.00 0.00 39.71 5.80
2566 2632 2.094700 GTCTTCGAAAATTTGAGGCCCC 60.095 50.000 0.00 0.00 0.00 5.80
2567 2633 0.885196 TTCGAAAATTTGAGGCCCCG 59.115 50.000 0.00 0.00 0.00 5.73
2568 2634 0.963355 TCGAAAATTTGAGGCCCCGG 60.963 55.000 0.00 0.00 0.00 5.73
2569 2635 1.248101 CGAAAATTTGAGGCCCCGGT 61.248 55.000 0.00 0.00 0.00 5.28
2570 2636 0.246360 GAAAATTTGAGGCCCCGGTG 59.754 55.000 0.00 0.00 0.00 4.94
2571 2637 1.826340 AAAATTTGAGGCCCCGGTGC 61.826 55.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.179555 CCAAGAAAAACACAAAAACCGGAAA 59.820 36.000 9.46 0.00 0.00 3.13
160 161 4.156455 ACTGCCGAATCCAGATTGTATT 57.844 40.909 0.00 0.00 34.47 1.89
206 207 1.065854 AGACAATAGTGGCCTGCTCAC 60.066 52.381 3.32 0.00 30.22 3.51
411 412 9.730705 TTGAGACTGAAACAGATATCTTGAAAT 57.269 29.630 1.33 0.00 35.18 2.17
624 627 9.613957 CTGACGATAATCTCACTAACGAAATAT 57.386 33.333 0.00 0.00 0.00 1.28
625 628 7.590322 GCTGACGATAATCTCACTAACGAAATA 59.410 37.037 0.00 0.00 0.00 1.40
626 629 6.418226 GCTGACGATAATCTCACTAACGAAAT 59.582 38.462 0.00 0.00 0.00 2.17
627 630 5.742453 GCTGACGATAATCTCACTAACGAAA 59.258 40.000 0.00 0.00 0.00 3.46
629 632 4.334481 TGCTGACGATAATCTCACTAACGA 59.666 41.667 0.00 0.00 0.00 3.85
630 633 4.598062 TGCTGACGATAATCTCACTAACG 58.402 43.478 0.00 0.00 0.00 3.18
685 689 2.413371 GCGAACTTGAGTTGATGCCTTC 60.413 50.000 0.30 0.00 38.56 3.46
708 712 2.538449 CACGAATCAGTATGTAACCGGC 59.462 50.000 0.00 0.00 37.40 6.13
710 714 3.183754 TGCACGAATCAGTATGTAACCG 58.816 45.455 0.00 0.00 37.40 4.44
714 718 3.638484 CCGATGCACGAATCAGTATGTA 58.362 45.455 9.75 0.00 45.77 2.29
719 731 2.167219 CGCCGATGCACGAATCAGT 61.167 57.895 9.75 0.00 45.77 3.41
722 734 1.215014 TGATCGCCGATGCACGAATC 61.215 55.000 3.34 9.56 45.77 2.52
735 747 1.017387 GGGGTTGTTCAGATGATCGC 58.983 55.000 0.00 0.00 0.00 4.58
738 750 2.381911 GCATGGGGTTGTTCAGATGAT 58.618 47.619 0.00 0.00 0.00 2.45
748 761 0.972471 GAAGGGAAGGCATGGGGTTG 60.972 60.000 0.00 0.00 0.00 3.77
761 774 1.271856 TACGTGGCATTGAGAAGGGA 58.728 50.000 0.00 0.00 0.00 4.20
771 784 3.288092 TCTGTCTCTGTATACGTGGCAT 58.712 45.455 0.00 0.00 0.00 4.40
803 816 1.152398 ACTGTCAGGTACACCCCGT 60.152 57.895 4.53 0.00 36.42 5.28
878 892 1.201429 AGAAGAAGGATGGCGTGGGT 61.201 55.000 0.00 0.00 0.00 4.51
879 893 0.462759 GAGAAGAAGGATGGCGTGGG 60.463 60.000 0.00 0.00 0.00 4.61
885 899 6.259893 TGATATAGGGAGAGAAGAAGGATGG 58.740 44.000 0.00 0.00 0.00 3.51
894 908 4.464244 CGCAGGATTGATATAGGGAGAGAA 59.536 45.833 0.00 0.00 0.00 2.87
895 909 4.019858 CGCAGGATTGATATAGGGAGAGA 58.980 47.826 0.00 0.00 0.00 3.10
901 915 2.834549 AGGGTCGCAGGATTGATATAGG 59.165 50.000 0.00 0.00 0.00 2.57
954 968 0.317770 GCTGCGTTTGCTTGCTGTTA 60.318 50.000 0.00 0.00 43.34 2.41
1074 1088 4.988598 CGTTGGGCCGTCAGCAGT 62.989 66.667 0.00 0.00 46.50 4.40
1100 1114 0.930742 GAGATCCTCGTAGCGCAACG 60.931 60.000 11.47 3.33 44.19 4.10
1461 1481 3.507924 GGTGGCATCGCAATCGCA 61.508 61.111 0.00 0.00 38.40 5.10
1462 1482 4.596180 CGGTGGCATCGCAATCGC 62.596 66.667 7.44 0.00 35.26 4.58
1612 1647 1.118965 TCCGGTCACAGCCAGAAGAA 61.119 55.000 0.00 0.00 0.00 2.52
1613 1648 1.533033 TCCGGTCACAGCCAGAAGA 60.533 57.895 0.00 0.00 0.00 2.87
1621 1656 1.081892 CAATGAAGCTCCGGTCACAG 58.918 55.000 0.00 0.00 0.00 3.66
1628 1663 0.597568 TTGCCAACAATGAAGCTCCG 59.402 50.000 0.00 0.00 0.00 4.63
1629 1664 2.818130 TTTGCCAACAATGAAGCTCC 57.182 45.000 0.00 0.00 35.21 4.70
1636 1671 2.028294 TGGTAGCCATTTGCCAACAATG 60.028 45.455 0.00 0.00 42.71 2.82
1647 1682 5.865085 ACGAACACATATATGGTAGCCATT 58.135 37.500 16.96 0.87 42.23 3.16
1648 1683 5.246203 AGACGAACACATATATGGTAGCCAT 59.754 40.000 16.96 5.92 46.99 4.40
1649 1684 4.587262 AGACGAACACATATATGGTAGCCA 59.413 41.667 16.96 0.00 38.19 4.75
1650 1685 5.135508 AGACGAACACATATATGGTAGCC 57.864 43.478 16.96 1.85 0.00 3.93
1651 1686 5.983720 ACAAGACGAACACATATATGGTAGC 59.016 40.000 16.96 7.16 0.00 3.58
1652 1687 7.491372 ACAACAAGACGAACACATATATGGTAG 59.509 37.037 16.96 8.73 0.00 3.18
1653 1688 7.324935 ACAACAAGACGAACACATATATGGTA 58.675 34.615 16.96 0.00 0.00 3.25
1700 1735 8.248253 ACAGTACGAGTCAATCACAACATAATA 58.752 33.333 0.00 0.00 0.00 0.98
1701 1736 7.063426 CACAGTACGAGTCAATCACAACATAAT 59.937 37.037 0.00 0.00 0.00 1.28
1725 1781 0.680061 AAACCCGTCCAGAGAGACAC 59.320 55.000 0.00 0.00 36.52 3.67
1788 1845 7.122353 AGAGAAGAAAATCCATGTCCTTGATTG 59.878 37.037 0.00 0.00 0.00 2.67
1820 1877 1.969862 CGACGGGTTTGGGAGTAGT 59.030 57.895 0.00 0.00 0.00 2.73
1888 1945 2.162716 GCACTAAGCACCCAACGAG 58.837 57.895 0.00 0.00 44.79 4.18
2036 2093 2.279517 CCGAGGGCTGATGTACGC 60.280 66.667 0.00 0.00 0.00 4.42
2051 2116 4.995487 GGTTAGGGTAGATTATTGAAGCCG 59.005 45.833 0.00 0.00 34.69 5.52
2069 2134 1.772182 CTAGCCGATTCGCAGGTTAG 58.228 55.000 0.00 0.00 35.55 2.34
2077 2142 2.743938 ACATAAGTGCTAGCCGATTCG 58.256 47.619 13.29 0.00 0.00 3.34
2097 2163 5.337571 CGGCCTAAGCTCATCTATAATCCAA 60.338 44.000 0.00 0.00 39.73 3.53
2098 2164 4.160439 CGGCCTAAGCTCATCTATAATCCA 59.840 45.833 0.00 0.00 39.73 3.41
2099 2165 4.442192 CCGGCCTAAGCTCATCTATAATCC 60.442 50.000 0.00 0.00 39.73 3.01
2100 2166 4.160626 ACCGGCCTAAGCTCATCTATAATC 59.839 45.833 0.00 0.00 39.73 1.75
2101 2167 4.097418 ACCGGCCTAAGCTCATCTATAAT 58.903 43.478 0.00 0.00 39.73 1.28
2102 2168 3.507411 ACCGGCCTAAGCTCATCTATAA 58.493 45.455 0.00 0.00 39.73 0.98
2103 2169 3.170991 ACCGGCCTAAGCTCATCTATA 57.829 47.619 0.00 0.00 39.73 1.31
2104 2170 2.016905 ACCGGCCTAAGCTCATCTAT 57.983 50.000 0.00 0.00 39.73 1.98
2105 2171 2.670019 TACCGGCCTAAGCTCATCTA 57.330 50.000 0.00 0.00 39.73 1.98
2106 2172 2.016905 ATACCGGCCTAAGCTCATCT 57.983 50.000 0.00 0.00 39.73 2.90
2107 2173 3.510360 TCTTATACCGGCCTAAGCTCATC 59.490 47.826 15.50 0.00 39.73 2.92
2108 2174 3.258622 GTCTTATACCGGCCTAAGCTCAT 59.741 47.826 15.50 0.00 39.73 2.90
2109 2175 2.626743 GTCTTATACCGGCCTAAGCTCA 59.373 50.000 15.50 0.79 39.73 4.26
2110 2176 2.626743 TGTCTTATACCGGCCTAAGCTC 59.373 50.000 15.50 12.12 39.73 4.09
2111 2177 2.674420 TGTCTTATACCGGCCTAAGCT 58.326 47.619 15.50 0.00 39.73 3.74
2112 2178 3.464111 TTGTCTTATACCGGCCTAAGC 57.536 47.619 15.50 12.06 38.76 3.09
2113 2179 7.383687 TGATTATTGTCTTATACCGGCCTAAG 58.616 38.462 14.56 14.56 0.00 2.18
2114 2180 7.305813 TGATTATTGTCTTATACCGGCCTAA 57.694 36.000 0.00 0.00 0.00 2.69
2115 2181 6.921486 TGATTATTGTCTTATACCGGCCTA 57.079 37.500 0.00 0.00 0.00 3.93
2116 2182 5.818678 TGATTATTGTCTTATACCGGCCT 57.181 39.130 0.00 0.00 0.00 5.19
2117 2183 6.653320 TCAATGATTATTGTCTTATACCGGCC 59.347 38.462 0.00 0.00 43.33 6.13
2118 2184 7.667043 TCAATGATTATTGTCTTATACCGGC 57.333 36.000 0.00 0.00 43.33 6.13
2136 2202 9.784531 CCTTAGGCTTTAGAGATTAATCAATGA 57.215 33.333 17.56 0.00 0.00 2.57
2137 2203 9.566432 ACCTTAGGCTTTAGAGATTAATCAATG 57.434 33.333 17.56 6.83 0.00 2.82
2138 2204 9.566432 CACCTTAGGCTTTAGAGATTAATCAAT 57.434 33.333 17.56 7.80 0.00 2.57
2139 2205 7.499232 GCACCTTAGGCTTTAGAGATTAATCAA 59.501 37.037 17.56 0.61 0.00 2.57
2140 2206 6.992715 GCACCTTAGGCTTTAGAGATTAATCA 59.007 38.462 17.56 0.00 0.00 2.57
2141 2207 6.992715 TGCACCTTAGGCTTTAGAGATTAATC 59.007 38.462 7.41 7.41 0.00 1.75
2142 2208 6.768381 GTGCACCTTAGGCTTTAGAGATTAAT 59.232 38.462 5.22 0.00 0.00 1.40
2143 2209 6.113411 GTGCACCTTAGGCTTTAGAGATTAA 58.887 40.000 5.22 0.00 0.00 1.40
2144 2210 5.671493 GTGCACCTTAGGCTTTAGAGATTA 58.329 41.667 5.22 0.00 0.00 1.75
2145 2211 4.518249 GTGCACCTTAGGCTTTAGAGATT 58.482 43.478 5.22 0.00 0.00 2.40
2146 2212 3.430929 CGTGCACCTTAGGCTTTAGAGAT 60.431 47.826 12.15 0.00 0.00 2.75
2147 2213 2.094182 CGTGCACCTTAGGCTTTAGAGA 60.094 50.000 12.15 0.00 0.00 3.10
2148 2214 2.271800 CGTGCACCTTAGGCTTTAGAG 58.728 52.381 12.15 0.00 0.00 2.43
2149 2215 1.066430 CCGTGCACCTTAGGCTTTAGA 60.066 52.381 12.15 0.00 0.00 2.10
2150 2216 1.369625 CCGTGCACCTTAGGCTTTAG 58.630 55.000 12.15 0.00 0.00 1.85
2151 2217 0.675522 GCCGTGCACCTTAGGCTTTA 60.676 55.000 21.90 0.00 45.67 1.85
2152 2218 1.971695 GCCGTGCACCTTAGGCTTT 60.972 57.895 21.90 0.00 45.67 3.51
2153 2219 2.359975 GCCGTGCACCTTAGGCTT 60.360 61.111 21.90 0.00 45.67 4.35
2156 2222 1.302511 AGTTGCCGTGCACCTTAGG 60.303 57.895 12.15 7.75 38.71 2.69
2157 2223 0.602638 TCAGTTGCCGTGCACCTTAG 60.603 55.000 12.15 0.00 38.71 2.18
2158 2224 0.036164 ATCAGTTGCCGTGCACCTTA 59.964 50.000 12.15 0.00 38.71 2.69
2159 2225 1.228245 ATCAGTTGCCGTGCACCTT 60.228 52.632 12.15 0.00 38.71 3.50
2160 2226 1.968017 CATCAGTTGCCGTGCACCT 60.968 57.895 12.15 0.00 38.71 4.00
2161 2227 2.260869 ACATCAGTTGCCGTGCACC 61.261 57.895 12.15 0.00 38.71 5.01
2162 2228 1.081906 CACATCAGTTGCCGTGCAC 60.082 57.895 6.82 6.82 38.71 4.57
2163 2229 0.817229 TTCACATCAGTTGCCGTGCA 60.817 50.000 0.00 0.00 36.47 4.57
2164 2230 0.110056 CTTCACATCAGTTGCCGTGC 60.110 55.000 0.00 0.00 0.00 5.34
2165 2231 1.229428 ACTTCACATCAGTTGCCGTG 58.771 50.000 0.00 0.00 0.00 4.94
2166 2232 1.967319 AACTTCACATCAGTTGCCGT 58.033 45.000 0.00 0.00 33.04 5.68
2167 2233 3.498397 ACTAAACTTCACATCAGTTGCCG 59.502 43.478 0.00 0.00 34.59 5.69
2168 2234 6.743575 ATACTAAACTTCACATCAGTTGCC 57.256 37.500 0.00 0.00 34.59 4.52
2222 2288 8.934825 GCAAATTATTGAGCAAACCTTATGAAA 58.065 29.630 0.00 0.00 38.94 2.69
2223 2289 8.313292 AGCAAATTATTGAGCAAACCTTATGAA 58.687 29.630 5.64 0.00 38.94 2.57
2224 2290 7.760794 CAGCAAATTATTGAGCAAACCTTATGA 59.239 33.333 5.64 0.00 38.94 2.15
2225 2291 7.546667 ACAGCAAATTATTGAGCAAACCTTATG 59.453 33.333 5.64 0.00 38.94 1.90
2226 2292 7.614494 ACAGCAAATTATTGAGCAAACCTTAT 58.386 30.769 5.64 0.00 38.94 1.73
2227 2293 6.991938 ACAGCAAATTATTGAGCAAACCTTA 58.008 32.000 5.64 0.00 38.94 2.69
2228 2294 5.857268 ACAGCAAATTATTGAGCAAACCTT 58.143 33.333 5.64 0.00 38.94 3.50
2229 2295 5.473066 ACAGCAAATTATTGAGCAAACCT 57.527 34.783 5.64 0.00 38.94 3.50
2230 2296 6.311200 CCTAACAGCAAATTATTGAGCAAACC 59.689 38.462 5.64 0.00 38.94 3.27
2231 2297 6.868339 ACCTAACAGCAAATTATTGAGCAAAC 59.132 34.615 5.64 0.00 38.94 2.93
2232 2298 6.867816 CACCTAACAGCAAATTATTGAGCAAA 59.132 34.615 5.64 0.00 38.94 3.68
2233 2299 6.389091 CACCTAACAGCAAATTATTGAGCAA 58.611 36.000 5.64 0.00 38.94 3.91
2234 2300 5.622007 GCACCTAACAGCAAATTATTGAGCA 60.622 40.000 5.64 0.00 38.94 4.26
2235 2301 4.800471 GCACCTAACAGCAAATTATTGAGC 59.200 41.667 0.00 0.00 38.94 4.26
2236 2302 6.199937 AGCACCTAACAGCAAATTATTGAG 57.800 37.500 0.00 0.00 38.94 3.02
2237 2303 6.389091 CAAGCACCTAACAGCAAATTATTGA 58.611 36.000 0.00 0.00 38.94 2.57
2238 2304 5.577945 CCAAGCACCTAACAGCAAATTATTG 59.422 40.000 0.00 0.00 39.65 1.90
2239 2305 5.337491 CCCAAGCACCTAACAGCAAATTATT 60.337 40.000 0.00 0.00 0.00 1.40
2240 2306 4.160252 CCCAAGCACCTAACAGCAAATTAT 59.840 41.667 0.00 0.00 0.00 1.28
2241 2307 3.509575 CCCAAGCACCTAACAGCAAATTA 59.490 43.478 0.00 0.00 0.00 1.40
2242 2308 2.299867 CCCAAGCACCTAACAGCAAATT 59.700 45.455 0.00 0.00 0.00 1.82
2243 2309 1.895131 CCCAAGCACCTAACAGCAAAT 59.105 47.619 0.00 0.00 0.00 2.32
2244 2310 1.133637 TCCCAAGCACCTAACAGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
2245 2311 0.476338 TCCCAAGCACCTAACAGCAA 59.524 50.000 0.00 0.00 0.00 3.91
2246 2312 0.476338 TTCCCAAGCACCTAACAGCA 59.524 50.000 0.00 0.00 0.00 4.41
2247 2313 1.839424 ATTCCCAAGCACCTAACAGC 58.161 50.000 0.00 0.00 0.00 4.40
2248 2314 4.843728 TCTTATTCCCAAGCACCTAACAG 58.156 43.478 0.00 0.00 0.00 3.16
2249 2315 4.919774 TCTTATTCCCAAGCACCTAACA 57.080 40.909 0.00 0.00 0.00 2.41
2250 2316 5.123979 CAGTTCTTATTCCCAAGCACCTAAC 59.876 44.000 0.00 0.00 0.00 2.34
2251 2317 5.222048 ACAGTTCTTATTCCCAAGCACCTAA 60.222 40.000 0.00 0.00 0.00 2.69
2252 2318 4.288626 ACAGTTCTTATTCCCAAGCACCTA 59.711 41.667 0.00 0.00 0.00 3.08
2253 2319 3.074538 ACAGTTCTTATTCCCAAGCACCT 59.925 43.478 0.00 0.00 0.00 4.00
2254 2320 3.421844 ACAGTTCTTATTCCCAAGCACC 58.578 45.455 0.00 0.00 0.00 5.01
2255 2321 4.092968 CGTACAGTTCTTATTCCCAAGCAC 59.907 45.833 0.00 0.00 0.00 4.40
2256 2322 4.020928 TCGTACAGTTCTTATTCCCAAGCA 60.021 41.667 0.00 0.00 0.00 3.91
2257 2323 4.329256 GTCGTACAGTTCTTATTCCCAAGC 59.671 45.833 0.00 0.00 0.00 4.01
2258 2324 4.561606 CGTCGTACAGTTCTTATTCCCAAG 59.438 45.833 0.00 0.00 0.00 3.61
2259 2325 4.487948 CGTCGTACAGTTCTTATTCCCAA 58.512 43.478 0.00 0.00 0.00 4.12
2260 2326 3.674138 GCGTCGTACAGTTCTTATTCCCA 60.674 47.826 0.00 0.00 0.00 4.37
2261 2327 2.856557 GCGTCGTACAGTTCTTATTCCC 59.143 50.000 0.00 0.00 0.00 3.97
2262 2328 2.529090 CGCGTCGTACAGTTCTTATTCC 59.471 50.000 0.00 0.00 0.00 3.01
2263 2329 2.035921 GCGCGTCGTACAGTTCTTATTC 60.036 50.000 8.43 0.00 0.00 1.75
2264 2330 1.916000 GCGCGTCGTACAGTTCTTATT 59.084 47.619 8.43 0.00 0.00 1.40
2265 2331 1.542544 GCGCGTCGTACAGTTCTTAT 58.457 50.000 8.43 0.00 0.00 1.73
2266 2332 0.790495 CGCGCGTCGTACAGTTCTTA 60.790 55.000 24.19 0.00 0.00 2.10
2267 2333 2.078914 CGCGCGTCGTACAGTTCTT 61.079 57.895 24.19 0.00 0.00 2.52
2268 2334 2.501222 CGCGCGTCGTACAGTTCT 60.501 61.111 24.19 0.00 0.00 3.01
2269 2335 4.174320 GCGCGCGTCGTACAGTTC 62.174 66.667 32.35 6.30 41.07 3.01
2288 2354 3.508840 CTCATTCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
2289 2355 3.508840 GCTCATTCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
2290 2356 3.140814 GGCTCATTCCCGCAACCC 61.141 66.667 0.00 0.00 0.00 4.11
2291 2357 3.508840 CGGCTCATTCCCGCAACC 61.509 66.667 0.00 0.00 39.22 3.77
2292 2358 2.435938 TCGGCTCATTCCCGCAAC 60.436 61.111 0.00 0.00 45.19 4.17
2293 2359 2.125147 CTCGGCTCATTCCCGCAA 60.125 61.111 0.00 0.00 45.19 4.85
2294 2360 4.838152 GCTCGGCTCATTCCCGCA 62.838 66.667 0.00 0.00 45.19 5.69
2295 2361 4.537433 AGCTCGGCTCATTCCCGC 62.537 66.667 0.00 0.00 45.19 6.13
2296 2362 2.587194 CAGCTCGGCTCATTCCCG 60.587 66.667 0.00 0.00 46.88 5.14
2297 2363 1.227497 CTCAGCTCGGCTCATTCCC 60.227 63.158 0.00 0.00 36.40 3.97
2298 2364 1.886777 GCTCAGCTCGGCTCATTCC 60.887 63.158 0.00 0.00 36.40 3.01
2299 2365 1.886777 GGCTCAGCTCGGCTCATTC 60.887 63.158 0.00 0.00 36.40 2.67
2300 2366 1.908340 AAGGCTCAGCTCGGCTCATT 61.908 55.000 8.80 0.00 36.40 2.57
2301 2367 1.045350 TAAGGCTCAGCTCGGCTCAT 61.045 55.000 8.80 0.00 36.40 2.90
2302 2368 1.045350 ATAAGGCTCAGCTCGGCTCA 61.045 55.000 8.80 0.00 36.40 4.26
2303 2369 0.105778 AATAAGGCTCAGCTCGGCTC 59.894 55.000 8.80 0.00 36.40 4.70
2304 2370 0.543749 AAATAAGGCTCAGCTCGGCT 59.456 50.000 0.00 3.03 40.77 5.52
2305 2371 1.383523 AAAATAAGGCTCAGCTCGGC 58.616 50.000 0.00 0.00 0.00 5.54
2306 2372 3.312697 GGTAAAAATAAGGCTCAGCTCGG 59.687 47.826 0.00 0.00 0.00 4.63
2307 2373 3.001330 CGGTAAAAATAAGGCTCAGCTCG 59.999 47.826 0.00 0.00 0.00 5.03
2308 2374 3.312697 CCGGTAAAAATAAGGCTCAGCTC 59.687 47.826 0.00 0.00 0.00 4.09
2309 2375 3.279434 CCGGTAAAAATAAGGCTCAGCT 58.721 45.455 0.00 0.00 0.00 4.24
2310 2376 3.014623 ACCGGTAAAAATAAGGCTCAGC 58.985 45.455 4.49 0.00 0.00 4.26
2311 2377 4.007659 ACACCGGTAAAAATAAGGCTCAG 58.992 43.478 6.87 0.00 0.00 3.35
2312 2378 4.023726 ACACCGGTAAAAATAAGGCTCA 57.976 40.909 6.87 0.00 0.00 4.26
2313 2379 6.499234 TTTACACCGGTAAAAATAAGGCTC 57.501 37.500 6.87 0.00 44.30 4.70
2347 2413 9.985730 ACCGACTCGTTAATTAATCCATAATTA 57.014 29.630 0.31 0.00 41.38 1.40
2348 2414 8.897872 ACCGACTCGTTAATTAATCCATAATT 57.102 30.769 0.31 0.00 44.48 1.40
2349 2415 8.897872 AACCGACTCGTTAATTAATCCATAAT 57.102 30.769 0.31 0.00 35.69 1.28
2350 2416 9.248291 GTAACCGACTCGTTAATTAATCCATAA 57.752 33.333 0.31 0.00 30.25 1.90
2351 2417 7.591057 CGTAACCGACTCGTTAATTAATCCATA 59.409 37.037 0.31 0.00 35.63 2.74
2352 2418 6.418819 CGTAACCGACTCGTTAATTAATCCAT 59.581 38.462 0.31 0.00 35.63 3.41
2353 2419 5.743398 CGTAACCGACTCGTTAATTAATCCA 59.257 40.000 0.31 0.00 35.63 3.41
2354 2420 5.173854 CCGTAACCGACTCGTTAATTAATCC 59.826 44.000 0.31 0.00 35.63 3.01
2355 2421 5.971202 TCCGTAACCGACTCGTTAATTAATC 59.029 40.000 0.31 0.00 35.63 1.75
2356 2422 5.890334 TCCGTAACCGACTCGTTAATTAAT 58.110 37.500 0.31 0.00 35.63 1.40
2357 2423 5.303747 TCCGTAACCGACTCGTTAATTAA 57.696 39.130 0.00 0.00 35.63 1.40
2358 2424 4.955925 TCCGTAACCGACTCGTTAATTA 57.044 40.909 0.00 0.00 35.63 1.40
2359 2425 3.848272 TCCGTAACCGACTCGTTAATT 57.152 42.857 0.00 0.00 35.63 1.40
2360 2426 3.191371 ACTTCCGTAACCGACTCGTTAAT 59.809 43.478 0.00 0.00 35.63 1.40
2361 2427 2.552315 ACTTCCGTAACCGACTCGTTAA 59.448 45.455 0.00 0.00 35.63 2.01
2362 2428 2.095768 CACTTCCGTAACCGACTCGTTA 60.096 50.000 0.00 0.00 35.63 3.18
2363 2429 0.954452 ACTTCCGTAACCGACTCGTT 59.046 50.000 0.00 0.00 35.63 3.85
2364 2430 0.239347 CACTTCCGTAACCGACTCGT 59.761 55.000 0.00 0.00 35.63 4.18
2365 2431 0.239347 ACACTTCCGTAACCGACTCG 59.761 55.000 0.00 0.00 35.63 4.18
2366 2432 1.267806 TGACACTTCCGTAACCGACTC 59.732 52.381 0.00 0.00 35.63 3.36
2367 2433 1.000938 GTGACACTTCCGTAACCGACT 60.001 52.381 0.00 0.00 35.63 4.18
2368 2434 1.000938 AGTGACACTTCCGTAACCGAC 60.001 52.381 1.07 0.00 35.63 4.79
2369 2435 1.001048 CAGTGACACTTCCGTAACCGA 60.001 52.381 5.04 0.00 35.63 4.69
2370 2436 1.269413 ACAGTGACACTTCCGTAACCG 60.269 52.381 5.04 0.00 0.00 4.44
2371 2437 2.401351 GACAGTGACACTTCCGTAACC 58.599 52.381 5.04 0.00 0.00 2.85
2372 2438 2.401351 GGACAGTGACACTTCCGTAAC 58.599 52.381 5.04 0.00 0.00 2.50
2373 2439 1.001048 CGGACAGTGACACTTCCGTAA 60.001 52.381 30.52 0.00 40.56 3.18
2374 2440 0.594602 CGGACAGTGACACTTCCGTA 59.405 55.000 30.52 0.00 40.56 4.02
2375 2441 1.105167 TCGGACAGTGACACTTCCGT 61.105 55.000 33.52 20.95 43.15 4.69
2376 2442 0.031585 TTCGGACAGTGACACTTCCG 59.968 55.000 31.76 31.76 43.56 4.30
2377 2443 1.865340 GTTTCGGACAGTGACACTTCC 59.135 52.381 19.10 19.10 0.00 3.46
2378 2444 2.546778 TGTTTCGGACAGTGACACTTC 58.453 47.619 5.04 7.23 33.40 3.01
2379 2445 2.684001 TGTTTCGGACAGTGACACTT 57.316 45.000 5.04 0.00 33.40 3.16
2380 2446 2.910688 ATGTTTCGGACAGTGACACT 57.089 45.000 1.07 1.07 42.62 3.55
2386 2452 3.253188 CACAATCCAATGTTTCGGACAGT 59.747 43.478 0.00 0.00 42.62 3.55
2387 2453 3.366273 CCACAATCCAATGTTTCGGACAG 60.366 47.826 0.00 0.00 42.62 3.51
2388 2454 2.556189 CCACAATCCAATGTTTCGGACA 59.444 45.455 0.00 0.00 43.71 4.02
2389 2455 2.094752 CCCACAATCCAATGTTTCGGAC 60.095 50.000 0.00 0.00 33.05 4.79
2390 2456 2.166829 CCCACAATCCAATGTTTCGGA 58.833 47.619 0.00 0.00 35.27 4.55
2391 2457 1.404047 GCCCACAATCCAATGTTTCGG 60.404 52.381 0.00 0.00 0.00 4.30
2392 2458 1.545582 AGCCCACAATCCAATGTTTCG 59.454 47.619 0.00 0.00 0.00 3.46
2393 2459 2.299867 ACAGCCCACAATCCAATGTTTC 59.700 45.455 0.00 0.00 0.00 2.78
2394 2460 2.328319 ACAGCCCACAATCCAATGTTT 58.672 42.857 0.00 0.00 0.00 2.83
2395 2461 2.014010 ACAGCCCACAATCCAATGTT 57.986 45.000 0.00 0.00 0.00 2.71
2396 2462 1.895131 GAACAGCCCACAATCCAATGT 59.105 47.619 0.00 0.00 0.00 2.71
2397 2463 1.135315 CGAACAGCCCACAATCCAATG 60.135 52.381 0.00 0.00 0.00 2.82
2398 2464 1.176527 CGAACAGCCCACAATCCAAT 58.823 50.000 0.00 0.00 0.00 3.16
2399 2465 1.523154 GCGAACAGCCCACAATCCAA 61.523 55.000 0.00 0.00 40.81 3.53
2400 2466 1.971167 GCGAACAGCCCACAATCCA 60.971 57.895 0.00 0.00 40.81 3.41
2401 2467 2.877691 GCGAACAGCCCACAATCC 59.122 61.111 0.00 0.00 40.81 3.01
2402 2468 2.480555 CGCGAACAGCCCACAATC 59.519 61.111 0.00 0.00 44.76 2.67
2403 2469 3.055719 CCGCGAACAGCCCACAAT 61.056 61.111 8.23 0.00 44.76 2.71
2404 2470 4.243008 TCCGCGAACAGCCCACAA 62.243 61.111 8.23 0.00 44.76 3.33
2405 2471 4.980805 GTCCGCGAACAGCCCACA 62.981 66.667 8.23 0.00 44.76 4.17
2406 2472 4.681978 AGTCCGCGAACAGCCCAC 62.682 66.667 8.23 0.00 44.76 4.61
2407 2473 4.373116 GAGTCCGCGAACAGCCCA 62.373 66.667 8.23 0.00 44.76 5.36
2420 2486 4.803426 CAGGCCCACGAGCGAGTC 62.803 72.222 0.00 0.00 0.00 3.36
2422 2488 4.504916 CTCAGGCCCACGAGCGAG 62.505 72.222 0.00 0.00 0.00 5.03
2434 2500 4.463879 CCACTGGCTCGGCTCAGG 62.464 72.222 14.10 0.00 33.43 3.86
2435 2501 3.368190 CTCCACTGGCTCGGCTCAG 62.368 68.421 10.49 10.49 34.62 3.35
2436 2502 3.385384 CTCCACTGGCTCGGCTCA 61.385 66.667 0.00 0.00 0.00 4.26
2437 2503 3.386237 ACTCCACTGGCTCGGCTC 61.386 66.667 0.00 0.00 0.00 4.70
2438 2504 3.699894 CACTCCACTGGCTCGGCT 61.700 66.667 0.00 0.00 0.00 5.52
2439 2505 3.240134 TTCACTCCACTGGCTCGGC 62.240 63.158 0.00 0.00 0.00 5.54
2440 2506 1.374758 GTTCACTCCACTGGCTCGG 60.375 63.158 0.00 0.00 0.00 4.63
2441 2507 1.374758 GGTTCACTCCACTGGCTCG 60.375 63.158 0.00 0.00 0.00 5.03
2442 2508 1.003233 GGGTTCACTCCACTGGCTC 60.003 63.158 0.00 0.00 0.00 4.70
2443 2509 0.178903 TAGGGTTCACTCCACTGGCT 60.179 55.000 0.00 0.00 0.00 4.75
2444 2510 0.250513 CTAGGGTTCACTCCACTGGC 59.749 60.000 0.00 0.00 0.00 4.85
2445 2511 0.250513 GCTAGGGTTCACTCCACTGG 59.749 60.000 0.00 0.00 0.00 4.00
2446 2512 1.270907 AGCTAGGGTTCACTCCACTG 58.729 55.000 0.00 0.00 0.00 3.66
2447 2513 2.031495 AAGCTAGGGTTCACTCCACT 57.969 50.000 0.00 0.00 0.00 4.00
2448 2514 2.832733 ACTAAGCTAGGGTTCACTCCAC 59.167 50.000 0.00 0.00 0.00 4.02
2449 2515 3.185880 ACTAAGCTAGGGTTCACTCCA 57.814 47.619 0.00 0.00 0.00 3.86
2450 2516 3.514309 TGAACTAAGCTAGGGTTCACTCC 59.486 47.826 18.65 2.02 42.56 3.85
2451 2517 4.803098 TGAACTAAGCTAGGGTTCACTC 57.197 45.455 18.65 2.29 42.56 3.51
2454 2520 3.514309 GGAGTGAACTAAGCTAGGGTTCA 59.486 47.826 18.65 18.65 44.35 3.18
2455 2521 3.118702 GGGAGTGAACTAAGCTAGGGTTC 60.119 52.174 15.14 15.14 39.54 3.62
2456 2522 2.838813 GGGAGTGAACTAAGCTAGGGTT 59.161 50.000 0.00 0.00 0.00 4.11
2457 2523 2.044630 AGGGAGTGAACTAAGCTAGGGT 59.955 50.000 0.00 0.00 0.00 4.34
2458 2524 2.696187 GAGGGAGTGAACTAAGCTAGGG 59.304 54.545 0.00 0.00 0.00 3.53
2459 2525 2.696187 GGAGGGAGTGAACTAAGCTAGG 59.304 54.545 0.00 0.00 0.00 3.02
2460 2526 2.696187 GGGAGGGAGTGAACTAAGCTAG 59.304 54.545 0.00 0.00 0.00 3.42
2461 2527 2.315155 AGGGAGGGAGTGAACTAAGCTA 59.685 50.000 0.00 0.00 0.00 3.32
2462 2528 1.079658 AGGGAGGGAGTGAACTAAGCT 59.920 52.381 0.00 0.00 0.00 3.74
2463 2529 1.483004 GAGGGAGGGAGTGAACTAAGC 59.517 57.143 0.00 0.00 0.00 3.09
2464 2530 3.028130 GAGAGGGAGGGAGTGAACTAAG 58.972 54.545 0.00 0.00 0.00 2.18
2465 2531 2.620886 CGAGAGGGAGGGAGTGAACTAA 60.621 54.545 0.00 0.00 0.00 2.24
2466 2532 1.064611 CGAGAGGGAGGGAGTGAACTA 60.065 57.143 0.00 0.00 0.00 2.24
2467 2533 0.323908 CGAGAGGGAGGGAGTGAACT 60.324 60.000 0.00 0.00 0.00 3.01
2468 2534 1.950973 GCGAGAGGGAGGGAGTGAAC 61.951 65.000 0.00 0.00 0.00 3.18
2469 2535 1.682684 GCGAGAGGGAGGGAGTGAA 60.683 63.158 0.00 0.00 0.00 3.18
2470 2536 2.043852 GCGAGAGGGAGGGAGTGA 60.044 66.667 0.00 0.00 0.00 3.41
2480 2546 2.105128 CTAGGGTTGCGCGAGAGG 59.895 66.667 12.10 0.00 0.00 3.69
2481 2547 2.583593 GCTAGGGTTGCGCGAGAG 60.584 66.667 12.10 0.00 0.00 3.20
2482 2548 4.143333 GGCTAGGGTTGCGCGAGA 62.143 66.667 12.10 0.00 0.00 4.04
2486 2552 2.638330 TATGACGGCTAGGGTTGCGC 62.638 60.000 0.00 0.00 0.00 6.09
2487 2553 0.033504 ATATGACGGCTAGGGTTGCG 59.966 55.000 0.00 0.00 0.00 4.85
2488 2554 2.299297 AGTATATGACGGCTAGGGTTGC 59.701 50.000 0.00 0.00 0.00 4.17
2489 2555 3.321111 ACAGTATATGACGGCTAGGGTTG 59.679 47.826 0.00 0.00 0.00 3.77
2490 2556 3.321111 CACAGTATATGACGGCTAGGGTT 59.679 47.826 0.00 0.00 0.00 4.11
2491 2557 2.891580 CACAGTATATGACGGCTAGGGT 59.108 50.000 0.00 0.00 0.00 4.34
2492 2558 2.891580 ACACAGTATATGACGGCTAGGG 59.108 50.000 0.00 0.00 0.00 3.53
2493 2559 4.585955 AACACAGTATATGACGGCTAGG 57.414 45.455 0.00 0.00 0.00 3.02
2494 2560 6.757010 AGAAAAACACAGTATATGACGGCTAG 59.243 38.462 0.00 0.00 0.00 3.42
2495 2561 6.636705 AGAAAAACACAGTATATGACGGCTA 58.363 36.000 0.00 0.00 0.00 3.93
2496 2562 5.488341 AGAAAAACACAGTATATGACGGCT 58.512 37.500 0.00 0.00 0.00 5.52
2497 2563 5.581085 AGAGAAAAACACAGTATATGACGGC 59.419 40.000 0.00 0.00 0.00 5.68
2498 2564 7.596749 AAGAGAAAAACACAGTATATGACGG 57.403 36.000 0.00 0.00 0.00 4.79
2499 2565 8.495949 ACAAAGAGAAAAACACAGTATATGACG 58.504 33.333 0.00 0.00 0.00 4.35
2500 2566 9.599322 CACAAAGAGAAAAACACAGTATATGAC 57.401 33.333 0.00 0.00 0.00 3.06
2501 2567 8.289618 GCACAAAGAGAAAAACACAGTATATGA 58.710 33.333 0.00 0.00 0.00 2.15
2502 2568 8.292448 AGCACAAAGAGAAAAACACAGTATATG 58.708 33.333 0.00 0.00 0.00 1.78
2503 2569 8.292448 CAGCACAAAGAGAAAAACACAGTATAT 58.708 33.333 0.00 0.00 0.00 0.86
2504 2570 7.639039 CAGCACAAAGAGAAAAACACAGTATA 58.361 34.615 0.00 0.00 0.00 1.47
2505 2571 6.498304 CAGCACAAAGAGAAAAACACAGTAT 58.502 36.000 0.00 0.00 0.00 2.12
2506 2572 5.676079 GCAGCACAAAGAGAAAAACACAGTA 60.676 40.000 0.00 0.00 0.00 2.74
2507 2573 4.737054 CAGCACAAAGAGAAAAACACAGT 58.263 39.130 0.00 0.00 0.00 3.55
2508 2574 3.549070 GCAGCACAAAGAGAAAAACACAG 59.451 43.478 0.00 0.00 0.00 3.66
2509 2575 3.193267 AGCAGCACAAAGAGAAAAACACA 59.807 39.130 0.00 0.00 0.00 3.72
2510 2576 3.774066 AGCAGCACAAAGAGAAAAACAC 58.226 40.909 0.00 0.00 0.00 3.32
2511 2577 4.423732 GAAGCAGCACAAAGAGAAAAACA 58.576 39.130 0.00 0.00 0.00 2.83
2512 2578 3.798878 GGAAGCAGCACAAAGAGAAAAAC 59.201 43.478 0.00 0.00 0.00 2.43
2513 2579 3.489059 CGGAAGCAGCACAAAGAGAAAAA 60.489 43.478 0.00 0.00 0.00 1.94
2514 2580 2.033299 CGGAAGCAGCACAAAGAGAAAA 59.967 45.455 0.00 0.00 0.00 2.29
2515 2581 1.603802 CGGAAGCAGCACAAAGAGAAA 59.396 47.619 0.00 0.00 0.00 2.52
2516 2582 1.229428 CGGAAGCAGCACAAAGAGAA 58.771 50.000 0.00 0.00 0.00 2.87
2517 2583 0.603707 CCGGAAGCAGCACAAAGAGA 60.604 55.000 0.00 0.00 0.00 3.10
2518 2584 1.871772 CCGGAAGCAGCACAAAGAG 59.128 57.895 0.00 0.00 0.00 2.85
2519 2585 2.260869 GCCGGAAGCAGCACAAAGA 61.261 57.895 5.05 0.00 42.97 2.52
2520 2586 2.256461 GCCGGAAGCAGCACAAAG 59.744 61.111 5.05 0.00 42.97 2.77
2521 2587 3.294493 GGCCGGAAGCAGCACAAA 61.294 61.111 5.05 0.00 46.50 2.83
2522 2588 4.577677 TGGCCGGAAGCAGCACAA 62.578 61.111 5.05 0.00 46.50 3.33
2536 2602 3.894547 TTTCGAAGACGGCCCTGGC 62.895 63.158 0.00 0.00 40.21 4.85
2537 2603 0.676782 ATTTTCGAAGACGGCCCTGG 60.677 55.000 0.00 0.00 40.21 4.45
2538 2604 1.165270 AATTTTCGAAGACGGCCCTG 58.835 50.000 0.00 0.00 40.21 4.45
2539 2605 1.539827 CAAATTTTCGAAGACGGCCCT 59.460 47.619 0.00 0.00 40.21 5.19
2540 2606 1.538075 TCAAATTTTCGAAGACGGCCC 59.462 47.619 0.00 0.00 40.21 5.80
2541 2607 2.414161 CCTCAAATTTTCGAAGACGGCC 60.414 50.000 0.00 0.00 40.21 6.13
2542 2608 2.851534 CCTCAAATTTTCGAAGACGGC 58.148 47.619 0.00 0.00 40.21 5.68
2543 2609 2.414161 GGCCTCAAATTTTCGAAGACGG 60.414 50.000 0.00 0.00 40.21 4.79
2544 2610 2.414161 GGGCCTCAAATTTTCGAAGACG 60.414 50.000 0.84 0.00 34.32 4.18
2545 2611 2.094700 GGGGCCTCAAATTTTCGAAGAC 60.095 50.000 0.84 0.00 34.32 3.01
2546 2612 2.167662 GGGGCCTCAAATTTTCGAAGA 58.832 47.619 0.84 0.00 0.00 2.87
2547 2613 1.135402 CGGGGCCTCAAATTTTCGAAG 60.135 52.381 1.96 0.00 0.00 3.79
2548 2614 0.885196 CGGGGCCTCAAATTTTCGAA 59.115 50.000 1.96 0.00 0.00 3.71
2549 2615 0.963355 CCGGGGCCTCAAATTTTCGA 60.963 55.000 1.96 0.00 0.00 3.71
2550 2616 1.248101 ACCGGGGCCTCAAATTTTCG 61.248 55.000 6.32 0.00 0.00 3.46
2551 2617 0.246360 CACCGGGGCCTCAAATTTTC 59.754 55.000 6.32 0.00 0.00 2.29
2552 2618 1.826340 GCACCGGGGCCTCAAATTTT 61.826 55.000 21.17 0.00 0.00 1.82
2553 2619 2.282783 GCACCGGGGCCTCAAATTT 61.283 57.895 21.17 0.00 0.00 1.82
2554 2620 2.679996 GCACCGGGGCCTCAAATT 60.680 61.111 21.17 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.