Multiple sequence alignment - TraesCS5D01G151400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G151400 chr5D 100.000 6766 0 0 1 6766 240517751 240510986 0.000000e+00 12495.0
1 TraesCS5D01G151400 chr5D 81.818 363 45 11 4632 4975 125997058 125996698 1.110000e-72 285.0
2 TraesCS5D01G151400 chr5D 82.716 324 36 2 4175 4479 125997505 125997183 3.110000e-68 270.0
3 TraesCS5D01G151400 chr5D 81.682 333 40 13 4167 4480 561623364 561623034 2.420000e-64 257.0
4 TraesCS5D01G151400 chr5D 96.154 52 2 0 4439 4490 240513261 240513210 1.210000e-12 86.1
5 TraesCS5D01G151400 chr5D 96.154 52 2 0 4491 4542 240513313 240513262 1.210000e-12 86.1
6 TraesCS5D01G151400 chr5A 94.245 3371 132 15 770 4136 313298428 313301740 0.000000e+00 5094.0
7 TraesCS5D01G151400 chr5A 91.182 1066 60 16 5247 6292 313301737 313302788 0.000000e+00 1417.0
8 TraesCS5D01G151400 chr5A 85.795 704 67 14 4 684 313296861 313297554 0.000000e+00 715.0
9 TraesCS5D01G151400 chr5A 92.875 393 12 6 6378 6766 313305688 313306068 2.130000e-154 556.0
10 TraesCS5D01G151400 chr5A 83.451 284 32 6 4968 5247 54664567 54664839 4.050000e-62 250.0
11 TraesCS5D01G151400 chr5A 96.970 66 2 0 6300 6365 313305301 313305366 1.990000e-20 111.0
12 TraesCS5D01G151400 chr5B 95.070 3164 109 17 779 3938 263209816 263212936 0.000000e+00 4935.0
13 TraesCS5D01G151400 chr5B 93.189 1527 57 20 5252 6766 263213103 263214594 0.000000e+00 2200.0
14 TraesCS5D01G151400 chr5B 95.402 174 8 0 3962 4135 263212927 263213100 1.860000e-70 278.0
15 TraesCS5D01G151400 chr5B 83.067 313 33 3 4167 4459 84938228 84938540 4.020000e-67 267.0
16 TraesCS5D01G151400 chr5B 83.566 286 31 7 4968 5248 255228383 255228109 3.130000e-63 254.0
17 TraesCS5D01G151400 chr5B 83.636 275 30 5 4978 5247 84939558 84939822 1.880000e-60 244.0
18 TraesCS5D01G151400 chr5B 84.615 91 7 1 4978 5068 641132050 641132133 4.350000e-12 84.2
19 TraesCS5D01G151400 chr5B 95.918 49 1 1 714 762 263209786 263209833 2.020000e-10 78.7
20 TraesCS5D01G151400 chr5B 88.889 63 5 2 3065 3126 263212040 263212101 7.280000e-10 76.8
21 TraesCS5D01G151400 chr1D 85.455 275 28 3 4978 5247 124917294 124917561 6.680000e-70 276.0
22 TraesCS5D01G151400 chr1D 85.281 231 27 6 5023 5247 55773643 55773414 1.470000e-56 231.0
23 TraesCS5D01G151400 chr1D 81.013 237 26 14 4758 4975 408191293 408191057 3.240000e-38 171.0
24 TraesCS5D01G151400 chr1D 100.000 40 0 0 624 663 454644576 454644615 2.620000e-09 75.0
25 TraesCS5D01G151400 chr7A 85.185 270 24 7 4981 5245 374561647 374561389 5.200000e-66 263.0
26 TraesCS5D01G151400 chr7A 93.827 81 5 0 4759 4839 179905673 179905753 9.210000e-24 122.0
27 TraesCS5D01G151400 chr6B 82.595 316 36 2 4163 4459 156405166 156405481 1.870000e-65 261.0
28 TraesCS5D01G151400 chrUn 83.916 286 28 10 4968 5247 60377452 60377725 2.420000e-64 257.0
29 TraesCS5D01G151400 chr2D 86.638 232 26 3 5021 5247 551460217 551460448 1.130000e-62 252.0
30 TraesCS5D01G151400 chr2D 77.247 356 40 22 4632 4952 605446024 605445675 3.240000e-38 171.0
31 TraesCS5D01G151400 chr7D 83.883 273 32 6 4978 5247 176585606 176585869 4.050000e-62 250.0
32 TraesCS5D01G151400 chr7D 78.478 381 43 13 4633 4975 132858228 132858607 5.320000e-51 213.0
33 TraesCS5D01G151400 chr7D 80.000 220 40 3 4758 4975 45831462 45831679 7.020000e-35 159.0
34 TraesCS5D01G151400 chr7D 86.047 129 14 3 4850 4975 76979356 76979483 1.180000e-27 135.0
35 TraesCS5D01G151400 chr3A 85.776 232 29 4 4175 4406 709778441 709778214 6.780000e-60 243.0
36 TraesCS5D01G151400 chr3A 79.112 383 40 14 4632 4975 709777996 709777615 1.900000e-55 228.0
37 TraesCS5D01G151400 chr1B 83.212 274 30 9 4981 5247 134426727 134426463 3.150000e-58 237.0
38 TraesCS5D01G151400 chr6D 83.929 224 31 4 4758 4978 462262353 462262574 6.880000e-50 209.0
39 TraesCS5D01G151400 chr6D 86.719 128 15 1 4850 4975 166795143 166795270 2.540000e-29 141.0
40 TraesCS5D01G151400 chr4A 78.273 359 40 16 4632 4953 624988336 624987979 5.350000e-46 196.0
41 TraesCS5D01G151400 chr4A 86.620 142 15 4 4837 4975 387097661 387097801 3.270000e-33 154.0
42 TraesCS5D01G151400 chr7B 80.000 240 26 10 4758 4975 143157601 143157840 2.530000e-34 158.0
43 TraesCS5D01G151400 chr2A 79.412 238 28 10 4758 4975 525614206 525614442 1.520000e-31 148.0
44 TraesCS5D01G151400 chr6A 82.781 151 20 5 4830 4976 516423753 516423605 5.510000e-26 130.0
45 TraesCS5D01G151400 chr3B 77.622 143 18 9 4167 4309 688121415 688121543 2.620000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G151400 chr5D 240510986 240517751 6765 True 12495.0 12495 100.0000 1 6766 1 chr5D.!!$R1 6765
1 TraesCS5D01G151400 chr5D 125996698 125997505 807 True 277.5 285 82.2670 4175 4975 2 chr5D.!!$R3 800
2 TraesCS5D01G151400 chr5A 313296861 313306068 9207 False 1578.6 5094 92.2134 4 6766 5 chr5A.!!$F2 6762
3 TraesCS5D01G151400 chr5B 263209786 263214594 4808 False 1513.7 4935 93.6936 714 6766 5 chr5B.!!$F3 6052
4 TraesCS5D01G151400 chr5B 84938228 84939822 1594 False 255.5 267 83.3515 4167 5247 2 chr5B.!!$F2 1080
5 TraesCS5D01G151400 chr3A 709777615 709778441 826 True 235.5 243 82.4440 4175 4975 2 chr3A.!!$R1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 317 0.471971 CACTATCCCCGGGATGGAGT 60.472 60.000 31.21 22.61 42.26 3.85 F
1359 2206 0.322546 AGACCCTGTTCCGCAATTCC 60.323 55.000 0.00 0.00 0.00 3.01 F
1974 2822 0.998669 CAGTTGTATGTGCGCGATCA 59.001 50.000 12.10 8.41 0.00 2.92 F
2186 3038 1.059692 CATAAAGACGCAGACACGCAG 59.940 52.381 0.00 0.00 36.19 5.18 F
3279 4133 0.958382 GCAGTGTCGCCCAATGGTTA 60.958 55.000 0.00 0.00 39.51 2.85 F
4173 5027 1.279558 GAAGTTTGAGACTCCTCCCCC 59.720 57.143 0.00 0.00 37.72 5.40 F
4491 5383 0.036952 TTTGCTCTCTTCGCTGGAGG 60.037 55.000 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2717 0.550914 ACACAAAGTTGCTCCCTCCA 59.449 50.000 0.00 0.0 0.00 3.86 R
2516 3370 0.322816 GCTCATTCAAGGGCCTCACA 60.323 55.000 6.46 0.0 0.00 3.58 R
3279 4133 1.826487 GGTGCCTGTCCGTTTTGGT 60.826 57.895 0.00 0.0 39.52 3.67 R
4153 5007 1.279558 GGGGGAGGAGTCTCAAACTTC 59.720 57.143 1.47 0.0 41.69 3.01 R
4472 5364 0.036952 CCTCCAGCGAAGAGAGCAAA 60.037 55.000 2.67 0.0 37.01 3.68 R
4993 6460 0.107831 TCAGGAAGGGAACAACACCG 59.892 55.000 0.00 0.0 0.00 4.94 R
6093 7569 1.546476 CTTAACAGCTCTGACCTCGGT 59.454 52.381 3.60 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.518249 AGAAGTAAAAGTAGGGCATGAGC 58.482 43.478 0.00 0.00 41.10 4.26
104 106 5.350914 TGTTGATTTGTTGTTGGAAGCAAAG 59.649 36.000 0.00 0.00 34.85 2.77
112 115 3.211045 TGTTGGAAGCAAAGTGGACTAC 58.789 45.455 0.00 0.00 0.00 2.73
137 140 4.617253 TGGAAGTACAAGTGCACTACAT 57.383 40.909 22.01 7.82 0.00 2.29
140 143 5.178797 GGAAGTACAAGTGCACTACATGAT 58.821 41.667 22.01 5.76 32.52 2.45
141 144 5.063944 GGAAGTACAAGTGCACTACATGATG 59.936 44.000 22.01 15.90 32.52 3.07
149 152 4.692625 AGTGCACTACATGATGAGTTCAAC 59.307 41.667 20.16 0.00 38.03 3.18
158 161 4.174411 TGATGAGTTCAACTGGACTACG 57.826 45.455 0.00 0.00 0.00 3.51
159 162 2.433868 TGAGTTCAACTGGACTACGC 57.566 50.000 0.00 0.00 0.00 4.42
182 197 2.744202 GGAGGCACACAAGAAGTACATG 59.256 50.000 0.00 0.00 0.00 3.21
185 200 3.565482 AGGCACACAAGAAGTACATGTTG 59.435 43.478 2.30 6.45 0.00 3.33
193 208 8.372459 ACACAAGAAGTACATGTTGTAATAGGA 58.628 33.333 12.55 0.00 34.89 2.94
212 227 4.766375 AGGAAGTACATATTTCACCGTGG 58.234 43.478 0.00 0.00 0.00 4.94
213 228 3.875134 GGAAGTACATATTTCACCGTGGG 59.125 47.826 0.00 0.00 0.00 4.61
280 295 6.492007 AGCACAAGTTACATTTCATGAGAG 57.508 37.500 0.00 0.00 0.00 3.20
294 309 2.359981 TGAGAGTACACTATCCCCGG 57.640 55.000 0.00 0.00 33.51 5.73
295 310 1.133575 TGAGAGTACACTATCCCCGGG 60.134 57.143 15.80 15.80 33.51 5.73
302 317 0.471971 CACTATCCCCGGGATGGAGT 60.472 60.000 31.21 22.61 42.26 3.85
303 318 0.471971 ACTATCCCCGGGATGGAGTG 60.472 60.000 31.21 16.62 42.26 3.51
317 333 6.119536 GGGATGGAGTGTAAATGTGTTATCA 58.880 40.000 0.00 0.00 0.00 2.15
341 357 9.687210 TCACATAAACTACTAGTGTGTTACTTG 57.313 33.333 5.39 10.70 40.89 3.16
342 358 8.433126 CACATAAACTACTAGTGTGTTACTTGC 58.567 37.037 5.39 0.00 40.89 4.01
344 360 5.443185 AACTACTAGTGTGTTACTTGCGA 57.557 39.130 5.39 0.00 40.89 5.10
346 362 5.458891 ACTACTAGTGTGTTACTTGCGAAG 58.541 41.667 5.39 0.00 40.89 3.79
347 363 4.317671 ACTAGTGTGTTACTTGCGAAGT 57.682 40.909 0.00 6.74 45.40 3.01
359 376 7.968956 TGTTACTTGCGAAGTTCAAATTTGTTA 59.031 29.630 17.47 5.03 42.81 2.41
442 459 2.162208 TCAGCCTTGAACATTTCGATGC 59.838 45.455 0.00 0.00 35.62 3.91
462 479 2.548057 GCGAGAAACATGTTGGTGAGAA 59.452 45.455 12.82 0.00 0.00 2.87
467 484 6.469782 AGAAACATGTTGGTGAGAACAATT 57.530 33.333 12.82 0.00 39.25 2.32
472 489 7.149569 ACATGTTGGTGAGAACAATTCATAG 57.850 36.000 0.00 0.00 39.25 2.23
476 493 7.424803 TGTTGGTGAGAACAATTCATAGTTTG 58.575 34.615 0.00 0.00 32.84 2.93
496 513 2.580322 TGGGAGCAACCTTCCATCATTA 59.420 45.455 0.00 0.00 42.05 1.90
497 514 3.217626 GGGAGCAACCTTCCATCATTAG 58.782 50.000 0.29 0.00 36.65 1.73
500 517 4.336713 GGAGCAACCTTCCATCATTAGAAC 59.663 45.833 0.00 0.00 34.74 3.01
501 518 3.941483 AGCAACCTTCCATCATTAGAACG 59.059 43.478 0.00 0.00 0.00 3.95
519 536 6.111768 AGAACGAATCCATCAAAATTCTCG 57.888 37.500 0.00 0.00 31.15 4.04
541 558 2.134201 TGTGTTGCGTCACTAGTCAG 57.866 50.000 11.32 0.00 38.90 3.51
546 563 4.505191 GTGTTGCGTCACTAGTCAGTAAAA 59.495 41.667 0.00 0.00 35.68 1.52
583 600 4.191544 TCTTAAGATGTTGGATTGGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
592 609 2.115427 TGGATTGGCTCGGTATCTTGA 58.885 47.619 0.00 0.00 0.00 3.02
594 611 3.054728 TGGATTGGCTCGGTATCTTGAAA 60.055 43.478 0.00 0.00 0.00 2.69
604 621 4.631377 TCGGTATCTTGAAAATGCTCAGTG 59.369 41.667 0.00 0.00 0.00 3.66
607 624 5.182001 GGTATCTTGAAAATGCTCAGTGTGT 59.818 40.000 0.00 0.00 0.00 3.72
610 627 5.122519 TCTTGAAAATGCTCAGTGTGTGTA 58.877 37.500 0.00 0.00 0.00 2.90
612 629 6.934083 TCTTGAAAATGCTCAGTGTGTGTATA 59.066 34.615 0.00 0.00 0.00 1.47
614 631 7.686438 TGAAAATGCTCAGTGTGTGTATATT 57.314 32.000 0.00 0.00 0.00 1.28
616 633 9.225436 TGAAAATGCTCAGTGTGTGTATATTTA 57.775 29.630 0.00 0.00 0.00 1.40
621 644 7.441836 TGCTCAGTGTGTGTATATTTATAGGG 58.558 38.462 0.00 0.00 0.00 3.53
624 647 9.645059 CTCAGTGTGTGTATATTTATAGGGATG 57.355 37.037 0.00 0.00 0.00 3.51
655 678 4.500837 GTGAGCGTCTATGATTGTACTGTG 59.499 45.833 0.00 0.00 0.00 3.66
657 680 5.073311 AGCGTCTATGATTGTACTGTGTT 57.927 39.130 0.00 0.00 0.00 3.32
737 1582 5.163794 GGTGATTTCGGGTTTACATACACAG 60.164 44.000 0.00 0.00 0.00 3.66
738 1583 5.640357 GTGATTTCGGGTTTACATACACAGA 59.360 40.000 0.00 0.00 0.00 3.41
742 1587 7.513371 TTTCGGGTTTACATACACAGAAAAT 57.487 32.000 0.00 0.00 0.00 1.82
743 1588 6.489127 TCGGGTTTACATACACAGAAAATG 57.511 37.500 0.00 0.00 0.00 2.32
744 1589 6.231951 TCGGGTTTACATACACAGAAAATGA 58.768 36.000 0.00 0.00 0.00 2.57
745 1590 6.711194 TCGGGTTTACATACACAGAAAATGAA 59.289 34.615 0.00 0.00 0.00 2.57
746 1591 7.228906 TCGGGTTTACATACACAGAAAATGAAA 59.771 33.333 0.00 0.00 0.00 2.69
747 1592 7.863375 CGGGTTTACATACACAGAAAATGAAAA 59.137 33.333 0.00 0.00 0.00 2.29
748 1593 9.535878 GGGTTTACATACACAGAAAATGAAAAA 57.464 29.630 0.00 0.00 0.00 1.94
766 1611 2.736670 AAACTGTCTCAAGCCTTGGT 57.263 45.000 4.30 0.00 0.00 3.67
767 1612 2.262423 AACTGTCTCAAGCCTTGGTC 57.738 50.000 4.30 0.00 0.00 4.02
768 1613 1.131638 ACTGTCTCAAGCCTTGGTCA 58.868 50.000 4.30 1.39 0.00 4.02
769 1614 1.490490 ACTGTCTCAAGCCTTGGTCAA 59.510 47.619 4.30 0.00 0.00 3.18
770 1615 2.092429 ACTGTCTCAAGCCTTGGTCAAA 60.092 45.455 4.30 0.00 0.00 2.69
771 1616 2.551459 CTGTCTCAAGCCTTGGTCAAAG 59.449 50.000 4.30 0.00 35.47 2.77
772 1617 2.172505 TGTCTCAAGCCTTGGTCAAAGA 59.827 45.455 4.30 0.00 38.24 2.52
773 1618 3.214328 GTCTCAAGCCTTGGTCAAAGAA 58.786 45.455 4.30 0.00 38.24 2.52
774 1619 3.632145 GTCTCAAGCCTTGGTCAAAGAAA 59.368 43.478 4.30 0.00 38.24 2.52
775 1620 3.885297 TCTCAAGCCTTGGTCAAAGAAAG 59.115 43.478 4.30 0.00 38.24 2.62
776 1621 3.885297 CTCAAGCCTTGGTCAAAGAAAGA 59.115 43.478 4.30 0.00 38.24 2.52
777 1622 4.277476 TCAAGCCTTGGTCAAAGAAAGAA 58.723 39.130 4.30 0.00 38.24 2.52
822 1667 3.056213 AGGTGGGCCTGAATTGTTG 57.944 52.632 4.53 0.00 45.05 3.33
898 1743 3.002862 CAGACTAGAAACTCGATCGAGGG 59.997 52.174 39.70 25.46 45.88 4.30
971 1817 2.103263 CTCCAAACCCTAGAGGAATCCG 59.897 54.545 0.00 0.00 39.89 4.18
1052 1898 4.779733 GTCCCCGCCAGAGGAGGA 62.780 72.222 7.44 0.00 45.77 3.71
1053 1899 4.465446 TCCCCGCCAGAGGAGGAG 62.465 72.222 7.44 0.00 45.77 3.69
1325 2171 2.093447 AGGGTTACTCCTTGCTTCATCG 60.093 50.000 0.00 0.00 32.13 3.84
1347 2193 4.568359 CGTTAGTGAAATGATGAGACCCTG 59.432 45.833 0.00 0.00 0.00 4.45
1351 2198 3.691609 GTGAAATGATGAGACCCTGTTCC 59.308 47.826 0.00 0.00 0.00 3.62
1359 2206 0.322546 AGACCCTGTTCCGCAATTCC 60.323 55.000 0.00 0.00 0.00 3.01
1363 2210 1.501741 CTGTTCCGCAATTCCCACG 59.498 57.895 0.00 0.00 0.00 4.94
1420 2267 6.969993 ATTAGGTCTACTTCCATCAGAGAC 57.030 41.667 0.00 0.00 36.60 3.36
1421 2268 3.283751 AGGTCTACTTCCATCAGAGACG 58.716 50.000 0.00 0.00 37.91 4.18
1476 2324 2.270923 CATTTCGTTCCTCTGATCGCA 58.729 47.619 0.00 0.00 34.46 5.10
1690 2538 9.383519 TGAAATTAGGTTTGTTGCAAATTACAA 57.616 25.926 0.00 0.00 0.00 2.41
1865 2713 2.744202 GGAAGTGTCTGCGAATGTTGAT 59.256 45.455 0.00 0.00 0.00 2.57
1869 2717 4.005650 AGTGTCTGCGAATGTTGATGATT 58.994 39.130 0.00 0.00 0.00 2.57
1871 2719 3.127376 TGTCTGCGAATGTTGATGATTGG 59.873 43.478 0.00 0.00 0.00 3.16
1974 2822 0.998669 CAGTTGTATGTGCGCGATCA 59.001 50.000 12.10 8.41 0.00 2.92
2000 2848 5.652994 AGTGGTTGCACTGTTTTCTTTTA 57.347 34.783 0.00 0.00 33.58 1.52
2021 2869 1.716503 ACCCCCTGTTAAGAAGCCATT 59.283 47.619 0.00 0.00 0.00 3.16
2039 2887 4.676196 GCCATTAAAGTCTTGTGCATGGAG 60.676 45.833 13.24 0.00 32.87 3.86
2048 2896 4.515191 GTCTTGTGCATGGAGTTTTCTACA 59.485 41.667 0.00 0.00 45.78 2.74
2179 3031 3.887621 AAGGCTACATAAAGACGCAGA 57.112 42.857 0.00 0.00 0.00 4.26
2180 3032 3.166489 AGGCTACATAAAGACGCAGAC 57.834 47.619 0.00 0.00 0.00 3.51
2181 3033 2.496070 AGGCTACATAAAGACGCAGACA 59.504 45.455 0.00 0.00 0.00 3.41
2182 3034 2.603560 GGCTACATAAAGACGCAGACAC 59.396 50.000 0.00 0.00 0.00 3.67
2183 3035 2.279136 GCTACATAAAGACGCAGACACG 59.721 50.000 0.00 0.00 39.50 4.49
2184 3036 1.068474 ACATAAAGACGCAGACACGC 58.932 50.000 0.00 0.00 36.19 5.34
2185 3037 1.067693 CATAAAGACGCAGACACGCA 58.932 50.000 0.00 0.00 36.19 5.24
2186 3038 1.059692 CATAAAGACGCAGACACGCAG 59.940 52.381 0.00 0.00 36.19 5.18
2377 3231 4.245660 TCCACAAATCTCACTCGAACATC 58.754 43.478 0.00 0.00 0.00 3.06
2431 3285 2.380064 AAATTGCTGTCTGGGGAACA 57.620 45.000 0.00 0.00 0.00 3.18
2513 3367 7.661968 TGATAGGACAAGTTGCTCAGATATAC 58.338 38.462 1.81 0.00 0.00 1.47
2516 3370 4.101741 GGACAAGTTGCTCAGATATACCCT 59.898 45.833 1.81 0.00 0.00 4.34
2628 3482 4.583871 ACCTTCATGAGTCACCAATTCTC 58.416 43.478 0.00 0.00 0.00 2.87
2646 3500 1.411977 CTCCATACCAGCTCTCTGTGG 59.588 57.143 0.00 0.00 38.66 4.17
2656 3510 5.426833 ACCAGCTCTCTGTGGAATACTAAAT 59.573 40.000 0.00 0.00 38.66 1.40
2699 3553 6.256539 CACTAGTCACAAGCATATTACTGGTG 59.743 42.308 9.43 9.43 39.96 4.17
2702 3556 6.106673 AGTCACAAGCATATTACTGGTGTAC 58.893 40.000 9.04 7.00 39.64 2.90
2827 3681 7.591057 GCAATAAATATTCAACGCTGATGCTTA 59.409 33.333 0.00 0.00 36.97 3.09
2862 3716 2.823924 TGCATAGTGGTTGTACACGT 57.176 45.000 0.00 0.00 45.80 4.49
2873 3727 3.194116 GGTTGTACACGTATCTTCCCAGA 59.806 47.826 0.00 0.00 0.00 3.86
3110 3964 8.565896 AAATCGGCATTTCATAGCTATTATGA 57.434 30.769 17.99 8.50 44.96 2.15
3254 4108 7.447594 AGTCTACCGAAAAATTTCAGGAGTTA 58.552 34.615 17.51 5.36 37.01 2.24
3279 4133 0.958382 GCAGTGTCGCCCAATGGTTA 60.958 55.000 0.00 0.00 39.51 2.85
3489 4343 9.654663 TTCTAGTTTGCTTCTAATCCTTTCTAC 57.345 33.333 0.00 0.00 0.00 2.59
3606 4460 4.155099 TCAATTTGTGTTTCGCGGTGATAT 59.845 37.500 6.13 0.00 0.00 1.63
3607 4461 4.695217 ATTTGTGTTTCGCGGTGATATT 57.305 36.364 6.13 0.00 0.00 1.28
3657 4511 4.033709 TCTAAGTATGCCAGCCTTTCTCT 58.966 43.478 0.00 0.00 0.00 3.10
3790 4644 7.226325 TCACATTCGTATATTGTTGATCATGCA 59.774 33.333 0.00 0.00 0.00 3.96
3994 4848 6.183360 GCGTCATTAGTTTAGAGCTGTTGATT 60.183 38.462 0.00 0.00 0.00 2.57
4038 4892 4.036518 AGAGAATGACCTGCCTACATCTT 58.963 43.478 0.00 0.00 0.00 2.40
4068 4922 4.133078 AGCTCTTAGCATCAAATAGGTGC 58.867 43.478 1.22 0.00 45.56 5.01
4136 4990 3.132056 AGTGGGAGAGTGGGTAGATAGA 58.868 50.000 0.00 0.00 0.00 1.98
4137 4991 3.730059 AGTGGGAGAGTGGGTAGATAGAT 59.270 47.826 0.00 0.00 0.00 1.98
4138 4992 4.920749 AGTGGGAGAGTGGGTAGATAGATA 59.079 45.833 0.00 0.00 0.00 1.98
4139 4993 5.557939 AGTGGGAGAGTGGGTAGATAGATAT 59.442 44.000 0.00 0.00 0.00 1.63
4140 4994 5.654650 GTGGGAGAGTGGGTAGATAGATATG 59.345 48.000 0.00 0.00 0.00 1.78
4141 4995 5.205056 GGGAGAGTGGGTAGATAGATATGG 58.795 50.000 0.00 0.00 0.00 2.74
4142 4996 5.044030 GGGAGAGTGGGTAGATAGATATGGA 60.044 48.000 0.00 0.00 0.00 3.41
4143 4997 6.494952 GGAGAGTGGGTAGATAGATATGGAA 58.505 44.000 0.00 0.00 0.00 3.53
4144 4998 6.378848 GGAGAGTGGGTAGATAGATATGGAAC 59.621 46.154 0.00 0.00 0.00 3.62
4160 5014 4.108699 TGGAACAACAAGCAGAAGTTTG 57.891 40.909 0.00 0.00 41.19 2.93
4161 5015 3.761218 TGGAACAACAAGCAGAAGTTTGA 59.239 39.130 0.00 0.00 39.04 2.69
4162 5016 4.142403 TGGAACAACAAGCAGAAGTTTGAG 60.142 41.667 0.00 0.00 39.04 3.02
4163 5017 4.096382 GGAACAACAAGCAGAAGTTTGAGA 59.904 41.667 0.00 0.00 38.10 3.27
4164 5018 4.622701 ACAACAAGCAGAAGTTTGAGAC 57.377 40.909 0.00 0.00 38.10 3.36
4165 5019 4.265073 ACAACAAGCAGAAGTTTGAGACT 58.735 39.130 0.00 0.00 38.10 3.24
4166 5020 4.333926 ACAACAAGCAGAAGTTTGAGACTC 59.666 41.667 0.00 0.00 38.10 3.36
4167 5021 3.471680 ACAAGCAGAAGTTTGAGACTCC 58.528 45.455 0.00 0.00 38.10 3.85
4168 5022 3.135530 ACAAGCAGAAGTTTGAGACTCCT 59.864 43.478 0.00 0.00 38.10 3.69
4169 5023 3.676291 AGCAGAAGTTTGAGACTCCTC 57.324 47.619 0.00 0.00 37.72 3.71
4170 5024 2.301583 AGCAGAAGTTTGAGACTCCTCC 59.698 50.000 0.00 0.00 37.72 4.30
4171 5025 2.614229 GCAGAAGTTTGAGACTCCTCCC 60.614 54.545 0.00 0.00 37.72 4.30
4172 5026 2.027653 CAGAAGTTTGAGACTCCTCCCC 60.028 54.545 0.00 0.00 37.72 4.81
4173 5027 1.279558 GAAGTTTGAGACTCCTCCCCC 59.720 57.143 0.00 0.00 37.72 5.40
4191 5045 3.385384 CCCTCTGTCGCTCCTGCA 61.385 66.667 0.00 0.00 39.64 4.41
4219 5073 4.222847 GAGGAACCCTAGCCGCCG 62.223 72.222 0.00 0.00 31.76 6.46
4251 5106 1.398234 CCCCTTCTCCTCCTCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
4325 5180 1.839296 GGGGCGCTATCTCCCTCTT 60.839 63.158 7.64 0.00 42.25 2.85
4338 5193 2.358737 CTCTTGCGTGGTGGGGTC 60.359 66.667 0.00 0.00 0.00 4.46
4469 5361 3.345808 CTGGTGTTGGCGACGGTG 61.346 66.667 0.00 0.00 0.00 4.94
4470 5362 4.920112 TGGTGTTGGCGACGGTGG 62.920 66.667 0.00 0.00 0.00 4.61
4473 5365 4.555709 TGTTGGCGACGGTGGCTT 62.556 61.111 14.75 0.00 35.06 4.35
4474 5366 3.284449 GTTGGCGACGGTGGCTTT 61.284 61.111 14.75 0.00 35.06 3.51
4475 5367 3.283684 TTGGCGACGGTGGCTTTG 61.284 61.111 14.75 0.00 35.06 2.77
4478 5370 4.090057 GCGACGGTGGCTTTGCTC 62.090 66.667 7.95 0.00 0.00 4.26
4479 5371 2.357517 CGACGGTGGCTTTGCTCT 60.358 61.111 0.00 0.00 0.00 4.09
4480 5372 2.383527 CGACGGTGGCTTTGCTCTC 61.384 63.158 0.00 0.00 0.00 3.20
4481 5373 1.004440 GACGGTGGCTTTGCTCTCT 60.004 57.895 0.00 0.00 0.00 3.10
4482 5374 0.603975 GACGGTGGCTTTGCTCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
4483 5375 0.603975 ACGGTGGCTTTGCTCTCTTC 60.604 55.000 0.00 0.00 0.00 2.87
4484 5376 1.630244 CGGTGGCTTTGCTCTCTTCG 61.630 60.000 0.00 0.00 0.00 3.79
4485 5377 1.499502 GTGGCTTTGCTCTCTTCGC 59.500 57.895 0.00 0.00 0.00 4.70
4486 5378 0.952984 GTGGCTTTGCTCTCTTCGCT 60.953 55.000 0.00 0.00 0.00 4.93
4487 5379 0.952497 TGGCTTTGCTCTCTTCGCTG 60.952 55.000 0.00 0.00 0.00 5.18
4488 5380 1.642952 GGCTTTGCTCTCTTCGCTGG 61.643 60.000 0.00 0.00 0.00 4.85
4489 5381 0.671781 GCTTTGCTCTCTTCGCTGGA 60.672 55.000 0.00 0.00 0.00 3.86
4490 5382 1.357907 CTTTGCTCTCTTCGCTGGAG 58.642 55.000 0.00 0.00 0.00 3.86
4491 5383 0.036952 TTTGCTCTCTTCGCTGGAGG 60.037 55.000 0.00 0.00 0.00 4.30
4492 5384 2.202864 GCTCTCTTCGCTGGAGGC 60.203 66.667 0.00 0.00 37.64 4.70
4521 5413 3.345808 CTGGTGTTGGCGACGGTG 61.346 66.667 0.00 0.00 0.00 4.94
4522 5414 4.920112 TGGTGTTGGCGACGGTGG 62.920 66.667 0.00 0.00 0.00 4.61
4525 5417 4.555709 TGTTGGCGACGGTGGCTT 62.556 61.111 14.75 0.00 35.06 4.35
4526 5418 3.284449 GTTGGCGACGGTGGCTTT 61.284 61.111 14.75 0.00 35.06 3.51
4527 5419 3.283684 TTGGCGACGGTGGCTTTG 61.284 61.111 14.75 0.00 35.06 2.77
4530 5422 4.090057 GCGACGGTGGCTTTGCTC 62.090 66.667 7.95 0.00 0.00 4.26
4531 5423 2.357517 CGACGGTGGCTTTGCTCT 60.358 61.111 0.00 0.00 0.00 4.09
4532 5424 2.671177 CGACGGTGGCTTTGCTCTG 61.671 63.158 0.00 0.00 0.00 3.35
4533 5425 1.598130 GACGGTGGCTTTGCTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
4534 5426 1.152963 ACGGTGGCTTTGCTCTGTT 60.153 52.632 0.00 0.00 0.00 3.16
4538 5430 1.227943 TGGCTTTGCTCTGTTCGCT 60.228 52.632 0.00 0.00 0.00 4.93
4547 5439 0.820226 CTCTGTTCGCTGGATCCAGA 59.180 55.000 40.29 21.56 46.30 3.86
4548 5440 1.411977 CTCTGTTCGCTGGATCCAGAT 59.588 52.381 40.29 0.00 46.30 2.90
4553 5445 2.507944 GCTGGATCCAGATGGCGT 59.492 61.111 40.29 0.00 46.30 5.68
4563 5455 3.717294 GATGGCGTGGGAGGTGGT 61.717 66.667 0.00 0.00 0.00 4.16
4564 5456 3.256960 ATGGCGTGGGAGGTGGTT 61.257 61.111 0.00 0.00 0.00 3.67
4565 5457 3.567579 ATGGCGTGGGAGGTGGTTG 62.568 63.158 0.00 0.00 0.00 3.77
4569 5461 2.034221 GTGGGAGGTGGTTGCTCC 59.966 66.667 0.00 0.00 36.58 4.70
4576 5468 1.966451 GGTGGTTGCTCCTCCGTTG 60.966 63.158 4.43 0.00 39.62 4.10
4580 5472 1.228154 GTTGCTCCTCCGTTGGGTT 60.228 57.895 0.00 0.00 33.83 4.11
4602 5495 3.680786 CGTGGCGTCCTGGTCAGA 61.681 66.667 0.00 0.00 0.00 3.27
4605 5498 1.609210 TGGCGTCCTGGTCAGATCA 60.609 57.895 0.00 0.00 0.00 2.92
4663 5588 4.735132 GCGGTGGCTGTGCTCGTA 62.735 66.667 0.00 0.00 35.83 3.43
4678 5603 3.391382 GTAGTGGTGGCGGCTCCT 61.391 66.667 27.50 13.37 35.26 3.69
4816 5754 4.408821 TGGCTCATGGCGGTGGTC 62.409 66.667 0.00 0.00 42.94 4.02
4820 5758 4.408821 TCATGGCGGTGGTCTGGC 62.409 66.667 0.00 0.00 44.42 4.85
4830 5768 0.531974 GTGGTCTGGCTCGTTTCACA 60.532 55.000 0.00 0.00 0.00 3.58
4835 5773 2.665185 GGCTCGTTTCACAGCGGT 60.665 61.111 0.00 0.00 36.41 5.68
4841 5799 4.196778 TTTCACAGCGGTGGCCCA 62.197 61.111 20.20 0.00 45.32 5.36
4843 5801 2.992817 TTTCACAGCGGTGGCCCATT 62.993 55.000 20.20 0.00 45.32 3.16
4858 5816 1.078497 CATTGGTGAGCGGCCTGTA 60.078 57.895 0.00 0.00 0.00 2.74
4860 5818 0.179045 ATTGGTGAGCGGCCTGTATC 60.179 55.000 0.00 0.00 0.00 2.24
4882 5840 0.466555 CCTTCGATCCCTCTCCTCGT 60.467 60.000 0.00 0.00 34.19 4.18
4886 5844 1.500512 CGATCCCTCTCCTCGTCGTC 61.501 65.000 0.00 0.00 0.00 4.20
4887 5845 0.179040 GATCCCTCTCCTCGTCGTCT 60.179 60.000 0.00 0.00 0.00 4.18
4888 5846 0.256464 ATCCCTCTCCTCGTCGTCTT 59.744 55.000 0.00 0.00 0.00 3.01
4890 5848 1.658686 CCCTCTCCTCGTCGTCTTGG 61.659 65.000 0.00 0.00 0.00 3.61
4904 5862 2.126228 TTGGCGCTACCTTCGTCG 60.126 61.111 7.64 0.00 40.22 5.12
4914 5872 2.657237 CTTCGTCGAAGGGCTGGT 59.343 61.111 24.37 0.00 36.16 4.00
4955 5915 3.785499 CTCGTCTCGCGACCGACA 61.785 66.667 23.18 12.40 45.68 4.35
4958 5918 4.400109 GTCTCGCGACCGACAGCA 62.400 66.667 20.02 0.00 38.82 4.41
4966 5926 2.915659 ACCGACAGCAGGACCGAA 60.916 61.111 0.00 0.00 0.00 4.30
4975 5935 1.863662 GCAGGACCGAACTCGTCTCA 61.864 60.000 0.00 0.00 37.74 3.27
4978 5938 0.179134 GGACCGAACTCGTCTCATGG 60.179 60.000 0.00 0.00 37.74 3.66
4979 5939 0.526662 GACCGAACTCGTCTCATGGT 59.473 55.000 0.00 0.00 37.74 3.55
5047 6514 1.071471 CTTGGAGCCCACAGTTCGT 59.929 57.895 0.00 0.00 30.78 3.85
5049 6516 2.432628 GGAGCCCACAGTTCGTCG 60.433 66.667 0.00 0.00 0.00 5.12
5059 6526 1.516386 AGTTCGTCGTATGCGGCTG 60.516 57.895 6.18 0.00 41.13 4.85
5072 6539 2.102438 CGGCTGCATCTCTTTGCGA 61.102 57.895 0.50 0.00 45.77 5.10
5080 6547 0.391661 ATCTCTTTGCGATGGCGTGT 60.392 50.000 0.00 0.00 44.10 4.49
5082 6549 1.075542 CTCTTTGCGATGGCGTGTTA 58.924 50.000 0.00 0.00 44.10 2.41
5083 6550 1.061131 CTCTTTGCGATGGCGTGTTAG 59.939 52.381 0.00 0.00 44.10 2.34
5086 6553 2.883730 GCGATGGCGTGTTAGCGA 60.884 61.111 0.00 0.00 40.36 4.93
5088 6555 1.516386 CGATGGCGTGTTAGCGACT 60.516 57.895 0.00 0.00 41.16 4.18
5092 6559 1.805945 GGCGTGTTAGCGACTGAGG 60.806 63.158 0.00 0.00 36.86 3.86
5093 6560 1.211969 GCGTGTTAGCGACTGAGGA 59.788 57.895 0.00 0.00 0.00 3.71
5094 6561 0.179134 GCGTGTTAGCGACTGAGGAT 60.179 55.000 0.00 0.00 0.00 3.24
5104 6571 1.079127 ACTGAGGATTCCGGTTGCG 60.079 57.895 0.00 0.00 0.00 4.85
5134 6601 3.518068 GGGGTGGTATTGCTGCGC 61.518 66.667 0.00 0.00 0.00 6.09
5135 6602 2.438434 GGGTGGTATTGCTGCGCT 60.438 61.111 9.73 0.00 0.00 5.92
5162 6629 2.094675 CTTTGTATCCTGCCTTGGGTG 58.905 52.381 0.00 0.00 0.00 4.61
5163 6630 0.331278 TTGTATCCTGCCTTGGGTGG 59.669 55.000 0.00 0.00 0.00 4.61
5195 6662 3.037249 GGCGTGCGTTTGTACCGA 61.037 61.111 0.00 0.00 0.00 4.69
5199 6666 0.111442 CGTGCGTTTGTACCGAGTTG 60.111 55.000 0.00 0.00 0.00 3.16
5202 6669 1.328069 TGCGTTTGTACCGAGTTGTTG 59.672 47.619 0.00 0.00 0.00 3.33
5203 6670 1.593933 GCGTTTGTACCGAGTTGTTGA 59.406 47.619 0.00 0.00 0.00 3.18
5204 6671 2.222445 GCGTTTGTACCGAGTTGTTGAT 59.778 45.455 0.00 0.00 0.00 2.57
5205 6672 3.663493 GCGTTTGTACCGAGTTGTTGATC 60.663 47.826 0.00 0.00 0.00 2.92
5247 6718 2.028476 GGGCAAAAGCCTTTTTCGGTAT 60.028 45.455 0.00 0.00 34.34 2.73
5248 6719 3.193903 GGGCAAAAGCCTTTTTCGGTATA 59.806 43.478 0.00 0.00 34.34 1.47
5249 6720 4.421058 GGCAAAAGCCTTTTTCGGTATAG 58.579 43.478 0.00 0.00 34.34 1.31
5250 6721 4.157105 GGCAAAAGCCTTTTTCGGTATAGA 59.843 41.667 0.00 0.00 34.34 1.98
5266 6737 7.462590 TCGGTATAGATAGATATGGATCAGGG 58.537 42.308 0.00 0.00 34.17 4.45
5342 6816 6.071221 AGCAAAAGTGGCATCTCATGAAAATA 60.071 34.615 0.00 0.00 0.00 1.40
5345 6819 9.158233 CAAAAGTGGCATCTCATGAAAATATTT 57.842 29.630 0.00 0.00 0.00 1.40
5401 6875 7.698130 GCTGTGTAGAAAATCATAAACATGGAC 59.302 37.037 0.00 0.00 0.00 4.02
5458 6932 2.900546 AGTAACAGTGAACCCTCCTCTG 59.099 50.000 0.00 0.00 0.00 3.35
5805 7280 6.154445 CACAGTTTTGAATTTCTGAGGGATG 58.846 40.000 0.00 0.00 0.00 3.51
5806 7281 6.016024 CACAGTTTTGAATTTCTGAGGGATGA 60.016 38.462 0.00 0.00 0.00 2.92
5807 7282 6.723052 ACAGTTTTGAATTTCTGAGGGATGAT 59.277 34.615 0.00 0.00 0.00 2.45
5808 7283 7.890127 ACAGTTTTGAATTTCTGAGGGATGATA 59.110 33.333 0.00 0.00 0.00 2.15
5809 7284 8.910944 CAGTTTTGAATTTCTGAGGGATGATAT 58.089 33.333 0.00 0.00 0.00 1.63
5855 7331 4.337274 AGTGTAACCTGGTGCTGTTTTTAC 59.663 41.667 0.00 0.00 37.80 2.01
5861 7337 0.110373 GGTGCTGTTTTTACCGAGCG 60.110 55.000 0.00 0.00 33.97 5.03
5972 7448 3.745975 CGTTGTCACTTGGATGTGTACAT 59.254 43.478 0.00 0.00 38.90 2.29
6020 7496 4.757149 AGTTGTAGTGCAGAAAATCTCACC 59.243 41.667 0.00 0.00 30.28 4.02
6036 7512 0.591170 CACCGCTTGTTGTTACCAGG 59.409 55.000 0.00 0.00 0.00 4.45
6060 7536 4.190772 CTGTGGTTGCTTGTTTTCCAAAT 58.809 39.130 0.00 0.00 31.20 2.32
6066 7542 6.825721 TGGTTGCTTGTTTTCCAAATGTTATT 59.174 30.769 0.00 0.00 31.20 1.40
6093 7569 2.689471 GCATCCATTTGGTGATAGTGCA 59.311 45.455 0.00 0.00 36.34 4.57
6115 7591 2.416162 CCGAGGTCAGAGCTGTTAAGAC 60.416 54.545 6.92 0.00 0.00 3.01
6136 7627 5.011125 AGACAAAAGACTTGATCTCTTCCGA 59.989 40.000 0.00 0.00 36.27 4.55
6216 7708 1.659098 CTTCTGTACCGAATGCGTTCC 59.341 52.381 13.02 0.00 35.23 3.62
6219 7711 0.319083 TGTACCGAATGCGTTCCTGT 59.681 50.000 13.02 12.33 35.23 4.00
6235 7727 1.474879 CCTGTGCATGCATGATGAACA 59.525 47.619 30.64 22.95 46.97 3.18
6365 10368 2.608752 GGAGCCGAGTCGTTTACTTTCA 60.609 50.000 12.31 0.00 39.07 2.69
6374 10377 7.488471 CCGAGTCGTTTACTTTCATTATCTCTT 59.512 37.037 12.31 0.00 39.07 2.85
6435 10744 5.647658 CCATTGTAGTTTGTGGATCTAGCAA 59.352 40.000 0.00 0.00 33.53 3.91
6447 10756 5.049129 GTGGATCTAGCAAAGCAATGATACC 60.049 44.000 0.00 0.00 0.00 2.73
6597 10910 2.324541 AGCCGAGATCTCCTAGCATTT 58.675 47.619 22.19 5.90 0.00 2.32
6634 10947 1.847737 AGGTAGGAGATCGACCTCTGT 59.152 52.381 6.78 0.00 46.55 3.41
6635 10948 3.047115 AGGTAGGAGATCGACCTCTGTA 58.953 50.000 6.78 0.00 46.55 2.74
6636 10949 3.140623 GGTAGGAGATCGACCTCTGTAC 58.859 54.545 6.78 8.78 38.02 2.90
6702 11015 3.256136 ACCTGAGTAACTTTCTCCTCACG 59.744 47.826 0.00 0.00 31.11 4.35
6722 11036 1.798626 CATGATCTCCAGGACAGGGA 58.201 55.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.876357 TCATGCCCTACTTTTACTTCTTGT 58.124 37.500 0.00 0.00 0.00 3.16
2 3 5.163713 GCTCATGCCCTACTTTTACTTCTTG 60.164 44.000 0.00 0.00 0.00 3.02
26 27 8.885722 TGTTAATTGTTTTAGGGATAGCTTACG 58.114 33.333 0.00 0.00 0.00 3.18
74 76 7.850492 GCTTCCAACAACAAATCAACAATAAAC 59.150 33.333 0.00 0.00 0.00 2.01
76 78 7.044181 TGCTTCCAACAACAAATCAACAATAA 58.956 30.769 0.00 0.00 0.00 1.40
78 80 5.426504 TGCTTCCAACAACAAATCAACAAT 58.573 33.333 0.00 0.00 0.00 2.71
79 81 4.825422 TGCTTCCAACAACAAATCAACAA 58.175 34.783 0.00 0.00 0.00 2.83
80 82 4.462508 TGCTTCCAACAACAAATCAACA 57.537 36.364 0.00 0.00 0.00 3.33
81 83 5.351189 ACTTTGCTTCCAACAACAAATCAAC 59.649 36.000 0.00 0.00 32.07 3.18
82 84 5.350914 CACTTTGCTTCCAACAACAAATCAA 59.649 36.000 0.00 0.00 32.07 2.57
83 85 4.869297 CACTTTGCTTCCAACAACAAATCA 59.131 37.500 0.00 0.00 32.07 2.57
84 86 4.270808 CCACTTTGCTTCCAACAACAAATC 59.729 41.667 0.00 0.00 32.07 2.17
85 87 4.081198 TCCACTTTGCTTCCAACAACAAAT 60.081 37.500 0.00 0.00 32.07 2.32
86 88 3.259374 TCCACTTTGCTTCCAACAACAAA 59.741 39.130 0.00 0.00 0.00 2.83
112 115 3.149196 AGTGCACTTGTACTTCCAATGG 58.851 45.455 15.25 0.00 37.74 3.16
121 124 5.171476 ACTCATCATGTAGTGCACTTGTAC 58.829 41.667 27.06 17.82 34.65 2.90
137 140 3.614150 GCGTAGTCCAGTTGAACTCATCA 60.614 47.826 0.00 0.00 35.85 3.07
140 143 1.684450 TGCGTAGTCCAGTTGAACTCA 59.316 47.619 0.00 0.00 0.00 3.41
141 144 2.329379 CTGCGTAGTCCAGTTGAACTC 58.671 52.381 0.00 0.00 0.00 3.01
149 152 2.351244 TGCCTCCTGCGTAGTCCAG 61.351 63.158 0.00 0.00 45.60 3.86
158 161 0.536006 ACTTCTTGTGTGCCTCCTGC 60.536 55.000 0.00 0.00 41.77 4.85
159 162 2.224281 TGTACTTCTTGTGTGCCTCCTG 60.224 50.000 0.00 0.00 0.00 3.86
185 200 8.975439 CACGGTGAAATATGTACTTCCTATTAC 58.025 37.037 0.74 0.00 0.00 1.89
193 208 4.383770 CCTCCCACGGTGAAATATGTACTT 60.384 45.833 10.28 0.00 0.00 2.24
197 212 1.211949 CCCTCCCACGGTGAAATATGT 59.788 52.381 10.28 0.00 0.00 2.29
200 215 0.548197 ACCCCTCCCACGGTGAAATA 60.548 55.000 10.28 0.00 0.00 1.40
208 223 1.735376 CGATCTACACCCCTCCCACG 61.735 65.000 0.00 0.00 0.00 4.94
212 227 2.857744 CGGCGATCTACACCCCTCC 61.858 68.421 0.00 0.00 0.00 4.30
213 228 2.728817 CGGCGATCTACACCCCTC 59.271 66.667 0.00 0.00 0.00 4.30
267 282 6.183361 GGGGATAGTGTACTCTCATGAAATGT 60.183 42.308 0.00 0.00 46.80 2.71
269 284 5.011125 CGGGGATAGTGTACTCTCATGAAAT 59.989 44.000 0.00 0.00 0.00 2.17
270 285 4.341235 CGGGGATAGTGTACTCTCATGAAA 59.659 45.833 0.00 0.00 0.00 2.69
280 295 0.974383 CCATCCCGGGGATAGTGTAC 59.026 60.000 27.78 0.00 40.98 2.90
294 309 7.016361 GTGATAACACATTTACACTCCATCC 57.984 40.000 0.00 0.00 45.32 3.51
317 333 7.327761 CGCAAGTAACACACTAGTAGTTTATGT 59.672 37.037 15.50 3.11 36.04 2.29
328 344 4.684877 TGAACTTCGCAAGTAACACACTA 58.315 39.130 2.60 0.00 41.91 2.74
332 348 6.252655 ACAAATTTGAACTTCGCAAGTAACAC 59.747 34.615 24.64 0.00 41.91 3.32
337 353 8.419076 AAATAACAAATTTGAACTTCGCAAGT 57.581 26.923 24.64 0.00 45.46 3.16
338 354 9.701355 AAAAATAACAAATTTGAACTTCGCAAG 57.299 25.926 24.64 0.00 0.00 4.01
420 437 3.181493 GCATCGAAATGTTCAAGGCTGAT 60.181 43.478 0.00 0.00 35.18 2.90
422 439 2.523015 GCATCGAAATGTTCAAGGCTG 58.477 47.619 0.00 0.00 35.18 4.85
442 459 3.559655 TGTTCTCACCAACATGTTTCTCG 59.440 43.478 8.77 0.00 31.08 4.04
462 479 4.220602 GGTTGCTCCCAAACTATGAATTGT 59.779 41.667 0.00 0.00 35.74 2.71
472 489 1.546029 GATGGAAGGTTGCTCCCAAAC 59.454 52.381 0.00 0.00 38.98 2.93
476 493 2.149973 AATGATGGAAGGTTGCTCCC 57.850 50.000 0.00 0.00 36.75 4.30
496 513 5.065218 CCGAGAATTTTGATGGATTCGTTCT 59.935 40.000 0.00 0.00 37.35 3.01
497 514 5.064707 TCCGAGAATTTTGATGGATTCGTTC 59.935 40.000 0.00 0.00 37.35 3.95
500 517 5.008019 ACATCCGAGAATTTTGATGGATTCG 59.992 40.000 0.00 0.00 39.08 3.34
501 518 6.183360 ACACATCCGAGAATTTTGATGGATTC 60.183 38.462 0.00 0.00 39.08 2.52
519 536 1.993370 GACTAGTGACGCAACACATCC 59.007 52.381 0.00 0.00 42.45 3.51
557 574 7.173907 CGAGCCAATCCAACATCTTAAGATTAT 59.826 37.037 15.49 4.29 31.21 1.28
574 591 5.514279 CATTTTCAAGATACCGAGCCAATC 58.486 41.667 0.00 0.00 0.00 2.67
575 592 4.202050 GCATTTTCAAGATACCGAGCCAAT 60.202 41.667 0.00 0.00 0.00 3.16
579 596 3.623060 TGAGCATTTTCAAGATACCGAGC 59.377 43.478 0.00 0.00 0.00 5.03
583 600 5.182001 ACACACTGAGCATTTTCAAGATACC 59.818 40.000 0.00 0.00 0.00 2.73
594 611 9.494271 CCTATAAATATACACACACTGAGCATT 57.506 33.333 0.00 0.00 0.00 3.56
612 629 7.390027 GCTCACATACACTCATCCCTATAAAT 58.610 38.462 0.00 0.00 0.00 1.40
614 631 5.048013 CGCTCACATACACTCATCCCTATAA 60.048 44.000 0.00 0.00 0.00 0.98
616 633 3.256879 CGCTCACATACACTCATCCCTAT 59.743 47.826 0.00 0.00 0.00 2.57
618 635 1.410517 CGCTCACATACACTCATCCCT 59.589 52.381 0.00 0.00 0.00 4.20
621 644 3.428746 AGACGCTCACATACACTCATC 57.571 47.619 0.00 0.00 0.00 2.92
624 647 4.553756 TCATAGACGCTCACATACACTC 57.446 45.455 0.00 0.00 0.00 3.51
632 655 4.500837 CACAGTACAATCATAGACGCTCAC 59.499 45.833 0.00 0.00 0.00 3.51
636 659 6.880822 TTAACACAGTACAATCATAGACGC 57.119 37.500 0.00 0.00 0.00 5.19
663 687 6.435277 ACACGAAGTTAGGGTGAGATTACTAA 59.565 38.462 7.86 0.00 41.61 2.24
712 1528 4.095334 GTGTATGTAAACCCGAAATCACCC 59.905 45.833 0.00 0.00 0.00 4.61
722 1538 9.535878 TTTTTCATTTTCTGTGTATGTAAACCC 57.464 29.630 0.00 0.00 0.00 4.11
745 1590 3.365472 ACCAAGGCTTGAGACAGTTTTT 58.635 40.909 28.18 0.00 0.00 1.94
746 1591 2.952310 GACCAAGGCTTGAGACAGTTTT 59.048 45.455 28.18 1.19 0.00 2.43
747 1592 2.092429 TGACCAAGGCTTGAGACAGTTT 60.092 45.455 28.18 1.86 0.00 2.66
748 1593 1.490490 TGACCAAGGCTTGAGACAGTT 59.510 47.619 28.18 3.38 0.00 3.16
749 1594 1.131638 TGACCAAGGCTTGAGACAGT 58.868 50.000 28.18 16.49 0.00 3.55
750 1595 2.260844 TTGACCAAGGCTTGAGACAG 57.739 50.000 28.18 13.32 0.00 3.51
751 1596 2.172505 TCTTTGACCAAGGCTTGAGACA 59.827 45.455 28.18 19.49 32.64 3.41
752 1597 2.851195 TCTTTGACCAAGGCTTGAGAC 58.149 47.619 28.18 17.38 32.64 3.36
753 1598 3.576078 TTCTTTGACCAAGGCTTGAGA 57.424 42.857 28.18 18.51 32.64 3.27
754 1599 3.885297 TCTTTCTTTGACCAAGGCTTGAG 59.115 43.478 28.18 19.29 32.64 3.02
755 1600 3.897239 TCTTTCTTTGACCAAGGCTTGA 58.103 40.909 28.18 5.88 32.64 3.02
756 1601 4.654091 TTCTTTCTTTGACCAAGGCTTG 57.346 40.909 20.31 20.31 32.64 4.01
757 1602 5.675684 TTTTCTTTCTTTGACCAAGGCTT 57.324 34.783 0.00 0.00 32.64 4.35
758 1603 5.675684 TTTTTCTTTCTTTGACCAAGGCT 57.324 34.783 0.00 0.00 32.64 4.58
816 1661 2.334838 GTAGCGACGAGGAACAACAAT 58.665 47.619 0.00 0.00 0.00 2.71
971 1817 3.259625 GGATCATAGGTAGAAGCTGGTCC 59.740 52.174 0.00 0.00 0.00 4.46
1052 1898 0.933700 CTCCTCCTCCTCTTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1053 1899 0.105709 CCTCCTCCTCCTCTTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
1054 1900 0.930726 TCCTCCTCCTCCTCTTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1143 1989 4.760047 CAGCCGACGACCTTGGGG 62.760 72.222 0.00 0.00 38.88 4.96
1325 2171 5.491982 ACAGGGTCTCATCATTTCACTAAC 58.508 41.667 0.00 0.00 0.00 2.34
1343 2189 1.304052 TGGGAATTGCGGAACAGGG 60.304 57.895 0.00 0.00 0.00 4.45
1347 2193 2.178273 GCGTGGGAATTGCGGAAC 59.822 61.111 0.00 0.00 0.00 3.62
1420 2267 2.607187 AGAATGTGTAAAGACTCGCCG 58.393 47.619 0.00 0.00 0.00 6.46
1421 2268 3.994392 TGAAGAATGTGTAAAGACTCGCC 59.006 43.478 0.00 0.00 0.00 5.54
1497 2345 6.013032 AGGACACACTAGTCACTAGGTAAGTA 60.013 42.308 16.50 0.00 40.29 2.24
1498 2346 5.008980 GGACACACTAGTCACTAGGTAAGT 58.991 45.833 16.50 8.68 40.29 2.24
1499 2347 5.254901 AGGACACACTAGTCACTAGGTAAG 58.745 45.833 16.50 5.69 40.29 2.34
1500 2348 5.251764 GAGGACACACTAGTCACTAGGTAA 58.748 45.833 16.50 0.00 40.29 2.85
1690 2538 5.547465 TCAAACATCCAGAATAACTCGTGT 58.453 37.500 0.00 0.00 0.00 4.49
1865 2713 2.158475 ACAAAGTTGCTCCCTCCAATCA 60.158 45.455 0.00 0.00 0.00 2.57
1869 2717 0.550914 ACACAAAGTTGCTCCCTCCA 59.449 50.000 0.00 0.00 0.00 3.86
1871 2719 1.967319 TGACACAAAGTTGCTCCCTC 58.033 50.000 0.00 0.00 0.00 4.30
2000 2848 1.154430 TGGCTTCTTAACAGGGGGTT 58.846 50.000 0.00 0.00 43.62 4.11
2021 2869 5.827797 AGAAAACTCCATGCACAAGACTTTA 59.172 36.000 0.00 0.00 0.00 1.85
2085 2937 7.257722 CGTTAAATGGCCATGAAACTTCTATT 58.742 34.615 27.89 15.84 0.00 1.73
2179 3031 3.033184 CCACAATGCACTGCGTGT 58.967 55.556 0.00 0.33 35.75 4.49
2180 3032 2.429571 GCCACAATGCACTGCGTG 60.430 61.111 0.00 0.00 36.51 5.34
2181 3033 3.673484 GGCCACAATGCACTGCGT 61.673 61.111 0.00 0.00 0.00 5.24
2182 3034 3.367743 AGGCCACAATGCACTGCG 61.368 61.111 5.01 0.00 0.00 5.18
2183 3035 1.243342 TACAGGCCACAATGCACTGC 61.243 55.000 5.01 0.00 34.73 4.40
2184 3036 1.133598 CATACAGGCCACAATGCACTG 59.866 52.381 5.01 0.00 36.34 3.66
2185 3037 1.272092 ACATACAGGCCACAATGCACT 60.272 47.619 5.01 0.00 0.00 4.40
2186 3038 1.176527 ACATACAGGCCACAATGCAC 58.823 50.000 5.01 0.00 0.00 4.57
2252 3104 7.690256 ACACCAGATACCAAATTAAGAGAAGT 58.310 34.615 0.00 0.00 0.00 3.01
2377 3231 3.085952 ACCACCATCACCCATACAAAG 57.914 47.619 0.00 0.00 0.00 2.77
2431 3285 2.643551 CTTTAAGACGACCATGGCCAT 58.356 47.619 14.09 14.09 0.00 4.40
2513 3367 0.682209 CATTCAAGGGCCTCACAGGG 60.682 60.000 6.46 0.00 35.37 4.45
2516 3370 0.322816 GCTCATTCAAGGGCCTCACA 60.323 55.000 6.46 0.00 0.00 3.58
2628 3482 1.489481 TCCACAGAGAGCTGGTATGG 58.511 55.000 0.00 0.00 46.60 2.74
2656 3510 7.392953 TGACTAGTGAAAACATATGCATGGAAA 59.607 33.333 10.16 0.00 36.39 3.13
2699 3553 2.268298 CACGCTGTATGGTTCTGGTAC 58.732 52.381 0.00 0.00 0.00 3.34
2702 3556 0.673333 TGCACGCTGTATGGTTCTGG 60.673 55.000 0.00 0.00 0.00 3.86
2827 3681 6.095440 CCACTATGCAAATAAGTTTGGCTACT 59.905 38.462 0.00 0.00 43.88 2.57
2862 3716 6.814954 AGAAGCTAAATGTCTGGGAAGATA 57.185 37.500 0.00 0.00 0.00 1.98
2873 3727 6.490040 TGCAAAAGGAGTAAGAAGCTAAATGT 59.510 34.615 0.00 0.00 0.00 2.71
3184 4038 7.172703 ACTTTAAAATTACAGTCCCAGAACTCG 59.827 37.037 0.00 0.00 0.00 4.18
3254 4108 2.031163 GGGCGACACTGCTTCACT 59.969 61.111 0.00 0.00 34.52 3.41
3279 4133 1.826487 GGTGCCTGTCCGTTTTGGT 60.826 57.895 0.00 0.00 39.52 3.67
3574 4428 4.555360 CGAAACACAAATTGACGAACAACA 59.445 37.500 0.00 0.00 41.52 3.33
3575 4429 4.545519 GCGAAACACAAATTGACGAACAAC 60.546 41.667 0.00 0.00 41.52 3.32
3576 4430 3.544285 GCGAAACACAAATTGACGAACAA 59.456 39.130 0.00 0.00 42.95 2.83
3607 4461 9.430623 TCTATGAATGAAAACTTCGTGTCATTA 57.569 29.630 0.00 0.00 40.03 1.90
3790 4644 4.101741 GCTATAGATGGGTCAACTGAAGGT 59.898 45.833 3.21 0.00 0.00 3.50
3947 4801 6.094881 ACGCCTACTTTGCATTACATAAATGT 59.905 34.615 0.63 0.63 45.78 2.71
3954 4808 3.046968 TGACGCCTACTTTGCATTACA 57.953 42.857 0.00 0.00 0.00 2.41
4136 4990 6.265196 TCAAACTTCTGCTTGTTGTTCCATAT 59.735 34.615 0.00 0.00 0.00 1.78
4137 4991 5.592282 TCAAACTTCTGCTTGTTGTTCCATA 59.408 36.000 0.00 0.00 0.00 2.74
4138 4992 4.402155 TCAAACTTCTGCTTGTTGTTCCAT 59.598 37.500 0.00 0.00 0.00 3.41
4139 4993 3.761218 TCAAACTTCTGCTTGTTGTTCCA 59.239 39.130 0.00 0.00 0.00 3.53
4140 4994 4.096382 TCTCAAACTTCTGCTTGTTGTTCC 59.904 41.667 0.00 0.00 0.00 3.62
4141 4995 5.030936 GTCTCAAACTTCTGCTTGTTGTTC 58.969 41.667 0.00 0.00 0.00 3.18
4142 4996 4.702131 AGTCTCAAACTTCTGCTTGTTGTT 59.298 37.500 0.00 0.00 33.03 2.83
4143 4997 4.265073 AGTCTCAAACTTCTGCTTGTTGT 58.735 39.130 0.00 0.00 33.03 3.32
4144 4998 4.260948 GGAGTCTCAAACTTCTGCTTGTTG 60.261 45.833 1.47 0.00 38.74 3.33
4145 4999 3.879892 GGAGTCTCAAACTTCTGCTTGTT 59.120 43.478 1.47 0.00 38.74 2.83
4146 5000 3.135530 AGGAGTCTCAAACTTCTGCTTGT 59.864 43.478 1.47 0.00 42.70 3.16
4147 5001 3.737850 AGGAGTCTCAAACTTCTGCTTG 58.262 45.455 1.47 0.00 42.70 4.01
4148 5002 3.244387 GGAGGAGTCTCAAACTTCTGCTT 60.244 47.826 1.47 0.00 44.47 3.91
4149 5003 2.301583 GGAGGAGTCTCAAACTTCTGCT 59.698 50.000 1.47 0.00 44.47 4.24
4150 5004 2.694213 GGAGGAGTCTCAAACTTCTGC 58.306 52.381 1.47 0.00 44.47 4.26
4151 5005 2.027653 GGGGAGGAGTCTCAAACTTCTG 60.028 54.545 1.47 0.00 44.47 3.02
4153 5007 1.279558 GGGGGAGGAGTCTCAAACTTC 59.720 57.143 1.47 0.00 41.69 3.01
4154 5008 1.363246 GGGGGAGGAGTCTCAAACTT 58.637 55.000 1.47 0.00 41.69 2.66
4155 5009 3.090504 GGGGGAGGAGTCTCAAACT 57.909 57.895 1.47 0.00 41.69 2.66
4172 5026 3.465403 CAGGAGCGACAGAGGGGG 61.465 72.222 0.00 0.00 0.00 5.40
4173 5027 4.154347 GCAGGAGCGACAGAGGGG 62.154 72.222 0.00 0.00 0.00 4.79
4191 5045 4.035102 GTTCCTCCCTTGCCGCCT 62.035 66.667 0.00 0.00 0.00 5.52
4234 5089 0.341609 AGAAGGGAGGAGGAGAAGGG 59.658 60.000 0.00 0.00 0.00 3.95
4313 5168 3.976339 CCACGCAAGAGGGAGATAG 57.024 57.895 0.00 0.00 45.11 2.08
4322 5177 4.308458 CGACCCCACCACGCAAGA 62.308 66.667 0.00 0.00 43.62 3.02
4347 5202 2.191908 CCGGCCCAATTGGATCGA 59.808 61.111 28.60 0.00 37.39 3.59
4348 5203 2.906897 CCCGGCCCAATTGGATCG 60.907 66.667 26.60 24.70 37.39 3.69
4411 5285 4.033776 CCCTCCGCACCACCATGT 62.034 66.667 0.00 0.00 0.00 3.21
4461 5353 4.090057 GAGCAAAGCCACCGTCGC 62.090 66.667 0.00 0.00 0.00 5.19
4462 5354 2.357517 AGAGCAAAGCCACCGTCG 60.358 61.111 0.00 0.00 0.00 5.12
4463 5355 0.603975 AAGAGAGCAAAGCCACCGTC 60.604 55.000 0.00 0.00 0.00 4.79
4464 5356 0.603975 GAAGAGAGCAAAGCCACCGT 60.604 55.000 0.00 0.00 0.00 4.83
4465 5357 1.630244 CGAAGAGAGCAAAGCCACCG 61.630 60.000 0.00 0.00 0.00 4.94
4466 5358 1.916697 GCGAAGAGAGCAAAGCCACC 61.917 60.000 0.00 0.00 34.19 4.61
4467 5359 0.952984 AGCGAAGAGAGCAAAGCCAC 60.953 55.000 0.00 0.00 37.01 5.01
4468 5360 0.952497 CAGCGAAGAGAGCAAAGCCA 60.952 55.000 0.00 0.00 37.01 4.75
4469 5361 1.642952 CCAGCGAAGAGAGCAAAGCC 61.643 60.000 0.00 0.00 37.01 4.35
4470 5362 0.671781 TCCAGCGAAGAGAGCAAAGC 60.672 55.000 0.00 0.00 37.01 3.51
4471 5363 1.357907 CTCCAGCGAAGAGAGCAAAG 58.642 55.000 0.00 0.00 37.01 2.77
4472 5364 0.036952 CCTCCAGCGAAGAGAGCAAA 60.037 55.000 2.67 0.00 37.01 3.68
4473 5365 1.593787 CCTCCAGCGAAGAGAGCAA 59.406 57.895 2.67 0.00 37.01 3.91
4474 5366 3.011635 GCCTCCAGCGAAGAGAGCA 62.012 63.158 2.67 0.00 37.01 4.26
4475 5367 2.202864 GCCTCCAGCGAAGAGAGC 60.203 66.667 2.67 1.72 32.86 4.09
4504 5396 3.345808 CACCGTCGCCAACACCAG 61.346 66.667 0.00 0.00 0.00 4.00
4505 5397 4.920112 CCACCGTCGCCAACACCA 62.920 66.667 0.00 0.00 0.00 4.17
4508 5400 4.555709 AAGCCACCGTCGCCAACA 62.556 61.111 0.00 0.00 0.00 3.33
4509 5401 3.284449 AAAGCCACCGTCGCCAAC 61.284 61.111 0.00 0.00 0.00 3.77
4510 5402 3.283684 CAAAGCCACCGTCGCCAA 61.284 61.111 0.00 0.00 0.00 4.52
4513 5405 4.090057 GAGCAAAGCCACCGTCGC 62.090 66.667 0.00 0.00 0.00 5.19
4514 5406 2.357517 AGAGCAAAGCCACCGTCG 60.358 61.111 0.00 0.00 0.00 5.12
4515 5407 1.166531 AACAGAGCAAAGCCACCGTC 61.167 55.000 0.00 0.00 0.00 4.79
4516 5408 1.152963 AACAGAGCAAAGCCACCGT 60.153 52.632 0.00 0.00 0.00 4.83
4517 5409 1.576421 GAACAGAGCAAAGCCACCG 59.424 57.895 0.00 0.00 0.00 4.94
4518 5410 1.576421 CGAACAGAGCAAAGCCACC 59.424 57.895 0.00 0.00 0.00 4.61
4519 5411 1.081840 GCGAACAGAGCAAAGCCAC 60.082 57.895 0.00 0.00 34.19 5.01
4520 5412 1.227943 AGCGAACAGAGCAAAGCCA 60.228 52.632 0.00 0.00 37.01 4.75
4521 5413 1.208614 CAGCGAACAGAGCAAAGCC 59.791 57.895 0.00 0.00 37.01 4.35
4522 5414 1.208614 CCAGCGAACAGAGCAAAGC 59.791 57.895 0.00 0.00 37.01 3.51
4523 5415 1.396301 GATCCAGCGAACAGAGCAAAG 59.604 52.381 0.00 0.00 37.01 2.77
4524 5416 1.442769 GATCCAGCGAACAGAGCAAA 58.557 50.000 0.00 0.00 37.01 3.68
4525 5417 0.391661 GGATCCAGCGAACAGAGCAA 60.392 55.000 6.95 0.00 37.01 3.91
4526 5418 1.219124 GGATCCAGCGAACAGAGCA 59.781 57.895 6.95 0.00 37.01 4.26
4527 5419 0.809241 CTGGATCCAGCGAACAGAGC 60.809 60.000 28.45 0.00 37.24 4.09
4528 5420 0.820226 TCTGGATCCAGCGAACAGAG 59.180 55.000 33.39 10.95 43.31 3.35
4529 5421 1.137675 CATCTGGATCCAGCGAACAGA 59.862 52.381 33.39 17.34 43.31 3.41
4530 5422 1.579698 CATCTGGATCCAGCGAACAG 58.420 55.000 33.39 16.21 43.31 3.16
4531 5423 0.178767 CCATCTGGATCCAGCGAACA 59.821 55.000 33.39 18.58 43.31 3.18
4532 5424 1.162800 GCCATCTGGATCCAGCGAAC 61.163 60.000 33.39 19.86 43.31 3.95
4533 5425 1.146930 GCCATCTGGATCCAGCGAA 59.853 57.895 33.39 19.31 43.31 4.70
4534 5426 2.824546 GCCATCTGGATCCAGCGA 59.175 61.111 33.39 20.23 43.31 4.93
4538 5430 2.745308 CCCACGCCATCTGGATCCA 61.745 63.158 15.27 15.27 37.39 3.41
4547 5439 3.256960 AACCACCTCCCACGCCAT 61.257 61.111 0.00 0.00 0.00 4.40
4548 5440 4.263572 CAACCACCTCCCACGCCA 62.264 66.667 0.00 0.00 0.00 5.69
4563 5455 1.228124 CAACCCAACGGAGGAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
4564 5456 2.429930 CAACCCAACGGAGGAGCA 59.570 61.111 0.00 0.00 0.00 4.26
4565 5457 3.056328 GCAACCCAACGGAGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
4587 5479 1.607801 CTGATCTGACCAGGACGCCA 61.608 60.000 0.00 0.00 0.00 5.69
4816 5754 2.671177 CCGCTGTGAAACGAGCCAG 61.671 63.158 0.00 0.00 42.39 4.85
4820 5758 2.954753 GCCACCGCTGTGAAACGAG 61.955 63.158 10.15 0.00 45.76 4.18
4841 5799 0.179045 GATACAGGCCGCTCACCAAT 60.179 55.000 0.00 0.00 0.00 3.16
4843 5801 2.900273 GATACAGGCCGCTCACCA 59.100 61.111 0.00 0.00 0.00 4.17
4860 5818 2.731374 GAGAGGGATCGAAGGCCG 59.269 66.667 0.00 0.00 40.25 6.13
4871 5829 1.658686 CCAAGACGACGAGGAGAGGG 61.659 65.000 0.00 0.00 0.00 4.30
4882 5840 1.214589 GAAGGTAGCGCCAAGACGA 59.785 57.895 2.29 0.00 40.61 4.20
4886 5844 2.158959 CGACGAAGGTAGCGCCAAG 61.159 63.158 2.29 0.00 40.61 3.61
4887 5845 2.126228 CGACGAAGGTAGCGCCAA 60.126 61.111 2.29 0.00 40.61 4.52
4888 5846 2.537792 CTTCGACGAAGGTAGCGCCA 62.538 60.000 26.43 0.00 40.61 5.69
4890 5848 3.676742 CTTCGACGAAGGTAGCGC 58.323 61.111 26.43 0.00 36.16 5.92
4904 5862 2.371259 GGGAGAGGACCAGCCCTTC 61.371 68.421 8.63 0.00 36.49 3.46
4914 5872 4.704103 ACCGCAGCTGGGAGAGGA 62.704 66.667 30.57 0.00 0.00 3.71
4949 5907 2.915659 TTCGGTCCTGCTGTCGGT 60.916 61.111 0.00 0.00 0.00 4.69
4953 5911 2.143594 GACGAGTTCGGTCCTGCTGT 62.144 60.000 6.48 0.00 44.95 4.40
4955 5915 1.587933 GAGACGAGTTCGGTCCTGCT 61.588 60.000 6.48 0.00 44.95 4.24
4958 5918 0.811915 CATGAGACGAGTTCGGTCCT 59.188 55.000 6.48 0.33 44.95 3.85
4963 5923 0.243907 ACCACCATGAGACGAGTTCG 59.756 55.000 0.00 0.00 46.33 3.95
4966 5926 1.975327 CCACCACCATGAGACGAGT 59.025 57.895 0.00 0.00 0.00 4.18
4993 6460 0.107831 TCAGGAAGGGAACAACACCG 59.892 55.000 0.00 0.00 0.00 4.94
4994 6461 2.230660 CTTCAGGAAGGGAACAACACC 58.769 52.381 1.01 0.00 34.87 4.16
5026 6493 3.850098 AACTGTGGGCTCCAAGGCG 62.850 63.158 0.00 0.00 42.43 5.52
5037 6504 1.410737 CCGCATACGACGAACTGTGG 61.411 60.000 0.00 7.97 43.93 4.17
5041 6508 1.516386 CAGCCGCATACGACGAACT 60.516 57.895 0.00 0.00 43.93 3.01
5059 6526 1.010350 CGCCATCGCAAAGAGATGC 60.010 57.895 5.38 0.00 42.92 3.91
5062 6529 0.602638 AACACGCCATCGCAAAGAGA 60.603 50.000 0.00 0.00 39.84 3.10
5068 6535 3.185365 CGCTAACACGCCATCGCA 61.185 61.111 0.00 0.00 39.84 5.10
5072 6539 0.458543 CTCAGTCGCTAACACGCCAT 60.459 55.000 0.00 0.00 0.00 4.40
5080 6547 0.744874 CCGGAATCCTCAGTCGCTAA 59.255 55.000 0.00 0.00 0.00 3.09
5082 6549 1.258445 AACCGGAATCCTCAGTCGCT 61.258 55.000 9.46 0.00 0.00 4.93
5083 6550 1.084370 CAACCGGAATCCTCAGTCGC 61.084 60.000 9.46 0.00 0.00 5.19
5086 6553 1.079127 CGCAACCGGAATCCTCAGT 60.079 57.895 9.46 0.00 0.00 3.41
5088 6555 2.435938 GCGCAACCGGAATCCTCA 60.436 61.111 9.46 0.00 34.32 3.86
5092 6559 0.373716 CTACAAGCGCAACCGGAATC 59.626 55.000 9.46 0.00 34.32 2.52
5093 6560 0.321298 ACTACAAGCGCAACCGGAAT 60.321 50.000 9.46 0.00 34.32 3.01
5094 6561 1.070105 ACTACAAGCGCAACCGGAA 59.930 52.632 9.46 0.00 34.32 4.30
5104 6571 1.244019 CCACCCCAAGCACTACAAGC 61.244 60.000 0.00 0.00 0.00 4.01
5114 6581 1.656818 CGCAGCAATACCACCCCAAG 61.657 60.000 0.00 0.00 0.00 3.61
5116 6583 2.045438 CGCAGCAATACCACCCCA 60.045 61.111 0.00 0.00 0.00 4.96
5134 6601 1.293924 CAGGATACAAAGGCGCTGAG 58.706 55.000 7.64 0.00 41.41 3.35
5135 6602 0.744414 GCAGGATACAAAGGCGCTGA 60.744 55.000 7.64 0.00 41.41 4.26
5140 6607 1.106285 CCAAGGCAGGATACAAAGGC 58.894 55.000 0.00 0.00 41.41 4.35
5141 6608 1.005924 ACCCAAGGCAGGATACAAAGG 59.994 52.381 0.00 0.00 41.41 3.11
5162 6629 1.140804 GCCAACACAACACACACCC 59.859 57.895 0.00 0.00 0.00 4.61
5163 6630 1.226547 CGCCAACACAACACACACC 60.227 57.895 0.00 0.00 0.00 4.16
5229 6700 8.433421 TCTATCTATACCGAAAAAGGCTTTTG 57.567 34.615 24.73 15.11 34.83 2.44
5247 6718 8.791749 TGTCATACCCTGATCCATATCTATCTA 58.208 37.037 0.00 0.00 35.97 1.98
5248 6719 7.656354 TGTCATACCCTGATCCATATCTATCT 58.344 38.462 0.00 0.00 35.97 1.98
5249 6720 7.904558 TGTCATACCCTGATCCATATCTATC 57.095 40.000 0.00 0.00 35.97 2.08
5250 6721 8.685257 TTTGTCATACCCTGATCCATATCTAT 57.315 34.615 0.00 0.00 35.97 1.98
5285 6756 7.701924 CACAAAGCTCTGTCAAACTCATTTAAA 59.298 33.333 0.00 0.00 0.00 1.52
5342 6816 6.815089 TCACAAGTAGTTGAAAATGGCAAAT 58.185 32.000 17.23 0.00 37.10 2.32
5345 6819 4.887071 ACTCACAAGTAGTTGAAAATGGCA 59.113 37.500 17.23 0.00 37.10 4.92
5401 6875 7.654520 CCATTAAATTTCCATGCATCACTAAGG 59.345 37.037 0.00 0.00 0.00 2.69
5458 6932 8.803397 AACTACAGTTTATATTCCAGAAACCC 57.197 34.615 0.00 0.00 38.81 4.11
5855 7331 2.399356 GGAAAGGAAAGGCGCTCGG 61.399 63.158 7.64 0.00 0.00 4.63
6036 7512 1.570813 GAAAACAAGCAACCACAGCC 58.429 50.000 0.00 0.00 0.00 4.85
6060 7536 5.187381 ACCAAATGGATGCATGTCAATAACA 59.813 36.000 2.46 0.00 39.60 2.41
6066 7542 2.805194 TCACCAAATGGATGCATGTCA 58.195 42.857 2.46 2.37 38.94 3.58
6093 7569 1.546476 CTTAACAGCTCTGACCTCGGT 59.454 52.381 3.60 0.00 0.00 4.69
6095 7571 2.229062 TGTCTTAACAGCTCTGACCTCG 59.771 50.000 3.60 0.00 0.00 4.63
6136 7627 3.168292 CCCAGGAAAATTCTTCAAGGCT 58.832 45.455 0.00 0.00 0.00 4.58
6216 7708 2.931512 TGTTCATCATGCATGCACAG 57.068 45.000 25.37 18.84 34.14 3.66
6243 7742 6.983984 TGTTCATCTGCATCAATCAAAGAAA 58.016 32.000 0.00 0.00 0.00 2.52
6244 7743 6.578163 TGTTCATCTGCATCAATCAAAGAA 57.422 33.333 0.00 0.00 0.00 2.52
6245 7744 6.578163 TTGTTCATCTGCATCAATCAAAGA 57.422 33.333 0.00 0.00 0.00 2.52
6246 7745 7.010183 GGAATTGTTCATCTGCATCAATCAAAG 59.990 37.037 0.00 0.00 0.00 2.77
6247 7746 6.814644 GGAATTGTTCATCTGCATCAATCAAA 59.185 34.615 0.00 0.00 0.00 2.69
6248 7747 6.153851 AGGAATTGTTCATCTGCATCAATCAA 59.846 34.615 0.00 0.00 0.00 2.57
6249 7748 5.655090 AGGAATTGTTCATCTGCATCAATCA 59.345 36.000 0.00 0.00 0.00 2.57
6250 7749 5.977725 CAGGAATTGTTCATCTGCATCAATC 59.022 40.000 0.00 0.00 0.00 2.67
6293 7792 2.260844 TCCTGCCAAAGAGTCTTGTG 57.739 50.000 6.06 7.06 0.00 3.33
6414 10723 5.181245 GCTTTGCTAGATCCACAAACTACAA 59.819 40.000 0.00 0.00 0.00 2.41
6435 10744 2.091720 TGCTGGATGGGTATCATTGCTT 60.092 45.455 0.00 0.00 35.97 3.91
6597 10910 3.159213 ACCTTTGTCCATCATGAAGCA 57.841 42.857 0.00 0.00 0.00 3.91
6634 10947 9.690913 ACATGTCCAAATGTACTAGTAGTAGTA 57.309 33.333 12.58 12.58 40.23 1.82
6635 10948 8.591114 ACATGTCCAAATGTACTAGTAGTAGT 57.409 34.615 14.57 14.57 42.49 2.73
6636 10949 8.683615 TGACATGTCCAAATGTACTAGTAGTAG 58.316 37.037 22.85 2.87 40.87 2.57
6702 11015 0.108207 CCCTGTCCTGGAGATCATGC 59.892 60.000 0.00 0.00 0.00 4.06
6722 11036 1.792115 CCCTGAGGCATCTCTTCTCT 58.208 55.000 0.00 0.00 40.58 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.